Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266310 | XP_024632959.1 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 1.39e-94 | 297 |
| Msa0266310 | XP_024632959.1 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 1.32e-177 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266310 | A0A396JGH2 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 6.62e-95 | 297 |
| Msa0266310 | A0A396JGH2 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 6.28e-178 | 508 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0266310 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266310 | MtrunA17_Chr2g0331601 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 0.0 | 508 |
| Msa0266310 | MtrunA17_Chr2g0331601 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 1.28e-98 | 297 |
| Msa0266310 | MtrunA17_Chr6g0481281 | 40.767 | 287 | 91 | 7 | 195 | 412 | 30 | 306 | 4.06e-54 | 182 |
| Msa0266310 | MtrunA17_Chr6g0481281 | 63.768 | 69 | 20 | 2 | 11 | 75 | 27 | 94 | 3.46e-17 | 81.6 |
| Msa0266310 | MtrunA17_Chr6g0481281 | 59.420 | 69 | 23 | 2 | 109 | 172 | 30 | 98 | 6.78e-15 | 75.1 |
| Msa0266310 | MtrunA17_Chr5g0448221 | 31.429 | 175 | 80 | 5 | 216 | 370 | 55 | 209 | 1.05e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266310 | AT5G56200.1 | 38.542 | 96 | 45 | 2 | 225 | 320 | 79 | 160 | 1.15e-12 | 69.7 |
| Msa0266310 | AT2G26940.1 | 37.143 | 105 | 61 | 1 | 225 | 324 | 49 | 153 | 8.03e-12 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTCTCTTCTGCCATTT+TGG | 0.136557 | 2_2:-66820809 | Msa0266300:intron |
| CAATACAAGGTAGTTATAAT+AGG | 0.224337 | 2_2:+66820048 | Msa0266310:CDS |
| CAATACAAGGTAGTAATAAT+AGG | 0.229853 | 2_2:+66820588 | Msa0266310:CDS |
| TGATAATACTATGGCTAGTT+TGG | 0.303196 | 2_2:+66820316 | Msa0266310:CDS |
| GTGATTTATCTTTGCCAAAA+TGG | 0.304193 | 2_2:+66820795 | Msa0266310:CDS |
| GTCCTTTAAAATCTCTATTC+CGG | 0.308881 | 2_2:-66820730 | Msa0266300:intron |
| CATGATGAAGTTTCTGCTTA+AGG | 0.329845 | 2_2:-66820280 | Msa0266300:intron |
| ACAAAAGGTTGATAATACTA+TGG | 0.403285 | 2_2:+66820307 | Msa0266310:CDS |
| GTGACCATACAAAGCATTCA+TGG | 0.407800 | 2_2:-66820696 | Msa0266300:intron |
| CCAACCATGAATGCTTTGTA+TGG | 0.410676 | 2_2:+66820692 | Msa0266310:CDS |
| AATACAAGGTAGTAATAATA+GGG | 0.421996 | 2_2:+66820589 | Msa0266310:CDS |
| TTACTACCTTGTATTGAGAA+AGG | 0.427202 | 2_2:-66820581 | Msa0266300:intron |
| TACTACCTTGTATTGAGAAA+GGG | 0.428907 | 2_2:-66820580 | Msa0266300:intron |
| AATACAAGGTAGTTATAATA+GGG | 0.431054 | 2_2:+66820049 | Msa0266310:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.442286 | 2_2:+66820464 | Msa0266310:CDS |
| TTTAGCAATGGAAAAGCATT+GGG | 0.444822 | 2_2:+66819954 | Msa0266310:CDS |
| TTTAGTAACGGAAAAGCATT+GGG | 0.453684 | 2_2:+66820494 | Msa0266310:CDS |
| ATTCGGAAAAGAGGATGAAA+AGG | 0.459648 | 2_2:+66819838 | Msa0266310:CDS |
| TGAGAAAACCTATGAAGATT+CGG | 0.461549 | 2_2:+66819821 | Msa0266310:CDS |
| TTTAGCAACGGAAAAGCATT+GGG | 0.462037 | 2_2:+66820236 | Msa0266310:CDS |
| TGTGTTGGTGAAACATCAAA+TGG | 0.466991 | 2_2:+66820905 | Msa0266310:CDS |
| AGTCAGAAAAGAGGGTGAAA+AGG | 0.473192 | 2_2:+66820378 | Msa0266310:CDS |
| GAATGAGTCGTATGTTATAG+AGG | 0.473597 | 2_2:+66821006 | Msa0266310:CDS |
| GATGATGAAGAAGAAATTGA+TGG | 0.474180 | 2_2:+66820629 | Msa0266310:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.475496 | 2_2:+66819924 | Msa0266310:CDS |
| AGAAGAGGTAGAAAGTGTAT+TGG | 0.483023 | 2_2:+66820830 | Msa0266310:CDS |
| CACATCAGTGCAATGTTTGT+GGG | 0.483344 | 2_2:+66819925 | Msa0266310:CDS |
| AGTCTGAAAAGAGGATAAAG+AGG | 0.489348 | 2_2:+66820120 | Msa0266310:CDS |
| AGTGATAAGCAGCCAAAGAA+AGG | 0.491245 | 2_2:+66820965 | Msa0266310:CDS |
| TTTGATAAAGATAGTAAGCA+TGG | 0.491925 | 2_2:+66820077 | Msa0266310:CDS |
| AAGCAGCCAAAGAAAGGAAA+AGG | 0.495623 | 2_2:+66820971 | Msa0266310:CDS |
| ACTTCATCATGATTCACAAA+AGG | 0.507116 | 2_2:+66820292 | Msa0266310:CDS |
| ACTCAATCATCATCAACAAA+AGG | 0.509294 | 2_2:+66820550 | Msa0266310:CDS |
| AACTACCTTGTATTGAGAGA+GGG | 0.509993 | 2_2:-66820040 | Msa0266300:intron |
| CCTATGAAGATTCGGAAAAG+AGG | 0.512041 | 2_2:+66819829 | Msa0266310:CDS |
| ACTTAATCATCGTTCACAAA+AGG | 0.517591 | 2_2:+66820010 | Msa0266310:CDS |
| CATAAAGAAGATCAAGATGA+TGG | 0.521149 | 2_2:+66820773 | Msa0266310:CDS |
| GCTTAAGGAAGTGAGATCTT+CGG | 0.523012 | 2_2:-66820265 | Msa0266300:intron |
| CAAACCCCTCTCTCAATACA+AGG | 0.526964 | 2_2:+66820035 | Msa0266310:CDS |
| TGGGAATGGCAAGAATGAGC+TGG | 0.528852 | 2_2:+66820925 | Msa0266310:CDS |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2_2:-66819983 | Msa0266300:intron |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2_2:-66820523 | Msa0266300:intron |
| CCCGTGAAGAGTCTGAAAAG+AGG | 0.549764 | 2_2:+66820111 | Msa0266310:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.556634 | 2_2:+66819964 | Msa0266310:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.560535 | 2_2:+66820504 | Msa0266310:CDS |
| ACTACCTTGTATTGAGAAAG+GGG | 0.563148 | 2_2:-66820579 | Msa0266300:intron |
| AAAACCCCTTTCTCAATACA+AGG | 0.568454 | 2_2:+66820575 | Msa0266310:CDS |
| CCATACAAAGCATTCATGGT+TGG | 0.569961 | 2_2:-66820692 | Msa0266300:intron |
| CTATGAAGAGTCAGAAAAGA+GGG | 0.570873 | 2_2:+66820370 | Msa0266310:CDS |
| ATCTTCTTTATGATATTCAG+TGG | 0.577502 | 2_2:-66820762 | Msa0266300:intron |
| CCTATGAAGAGTCAGAAAAG+AGG | 0.578028 | 2_2:+66820369 | Msa0266310:CDS |
| TCTTTATGATATTCAGTGGG+AGG | 0.578179 | 2_2:-66820758 | Msa0266300:intron |
| TGGCAGAAGAGAGATAGAAG+AGG | 0.582371 | 2_2:+66820815 | Msa0266310:CDS |
| AAGCGATGAAGATGATGCTA+AGG | 0.582770 | 2_2:+66820418 | Msa0266310:CDS |
| GGGAATGGCAAGAATGAGCT+GGG | 0.589572 | 2_2:+66820926 | Msa0266310:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.590398 | 2_2:+66820424 | Msa0266310:CDS |
| ACTACCTTGTATTGAGAGAG+GGG | 0.593179 | 2_2:-66820039 | Msa0266300:intron |
| GTGTTGGTGAAACATCAAAT+GGG | 0.595282 | 2_2:+66820906 | Msa0266310:CDS |
| TAACTACCTTGTATTGAGAG+AGG | 0.601425 | 2_2:-66820041 | Msa0266300:intron |
| TCTTCTTTATGATATTCAGT+GGG | 0.603725 | 2_2:-66820761 | Msa0266300:intron |
| TAGTGATGAAGATGATGCTA+AGG | 0.613974 | 2_2:+66819878 | Msa0266310:CDS |
| AGCAATGGAAAAGCATTGGG+TGG | 0.615604 | 2_2:+66819957 | Msa0266310:CDS |
| AAGTGATGAAGATGATGCTA+AGG | 0.616457 | 2_2:+66820160 | Msa0266310:CDS |
| ATGGATAAAGATCATAAGCA+TGG | 0.623190 | 2_2:+66819795 | Msa0266310:CDS |
| ATGGTCACATGAGGACTCAC+CGG | 0.623316 | 2_2:+66820711 | Msa0266310:CDS |
| AGCAACGGAAAAGCATTGGG+TGG | 0.623901 | 2_2:+66820239 | Msa0266310:CDS |
| AGATCATAAGCATGATCATG+AGG | 0.630396 | 2_2:+66820343 | Msa0266310:CDS |
| GGTGAAACATCAAATGGGAA+TGG | 0.636070 | 2_2:+66820911 | Msa0266310:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.644459 | 2_2:+66819884 | Msa0266310:CDS |
| AGTAACGGAAAAGCATTGGG+TGG | 0.649033 | 2_2:+66820497 | Msa0266310:CDS |
| GTGTATTGGTAGTGTTGAGG+CGG | 0.666307 | 2_2:+66820844 | Msa0266310:CDS |
| AAAAGTTCTTGTCATAACGA+AGG | 0.694153 | 2_2:-66820883 | Msa0266300:intron |
| AAAGTGTATTGGTAGTGTTG+AGG | 0.694754 | 2_2:+66820841 | Msa0266310:CDS |
| ATGCTTTGTATGGTCACATG+AGG | 0.725028 | 2_2:+66820702 | Msa0266310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAAGGTAGTTATAATA+GGG | + | chr2_2:66820049-66820068 | Msa0266310:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | + | chr2_2:66820589-66820608 | Msa0266310:CDS | 20.0% |
| !! | AATACAAGGTAGTTATAATA+GGG | + | chr2_2:66820049-66820068 | Msa0266310:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | + | chr2_2:66820589-66820608 | Msa0266310:CDS | 20.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | + | chr2_2:66820048-66820067 | Msa0266310:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | + | chr2_2:66820077-66820096 | Msa0266310:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | + | chr2_2:66820307-66820326 | Msa0266310:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | + | chr2_2:66820482-66820501 | Msa0266310:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | + | chr2_2:66820588-66820607 | Msa0266310:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | - | chr2_2:66820764-66820783 | Msa0266300:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | - | chr2_2:66820765-66820784 | Msa0266300:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | - | chr2_2:66820980-66820999 | Msa0266300:intron | 25.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | + | chr2_2:66820048-66820067 | Msa0266310:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | + | chr2_2:66820077-66820096 | Msa0266310:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | + | chr2_2:66820307-66820326 | Msa0266310:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | + | chr2_2:66820482-66820501 | Msa0266310:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | + | chr2_2:66820588-66820607 | Msa0266310:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | - | chr2_2:66820764-66820783 | Msa0266300:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | - | chr2_2:66820765-66820784 | Msa0266300:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | - | chr2_2:66820980-66820999 | Msa0266300:intron | 25.0% |
| ATGGATAAAGATCATAAGCA+TGG | + | chr2_2:66819795-66819814 | Msa0266310:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | + | chr2_2:66819821-66819840 | Msa0266310:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | + | chr2_2:66819953-66819972 | Msa0266310:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | + | chr2_2:66819954-66819973 | Msa0266310:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | + | chr2_2:66820010-66820029 | Msa0266310:CDS | 30.0% | |
| ! | ACACATCAATGCAATTTTTG+TGG | + | chr2_2:66820206-66820225 | Msa0266310:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | + | chr2_2:66820224-66820243 | Msa0266310:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | + | chr2_2:66820292-66820311 | Msa0266310:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | + | chr2_2:66820316-66820335 | Msa0266310:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | + | chr2_2:66820493-66820512 | Msa0266310:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | + | chr2_2:66820494-66820513 | Msa0266310:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | + | chr2_2:66820550-66820569 | Msa0266310:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | - | chr2_2:66820583-66820602 | Msa0266300:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | - | chr2_2:66820584-66820603 | Msa0266300:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | + | chr2_2:66820629-66820648 | Msa0266310:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | - | chr2_2:66820733-66820752 | Msa0266300:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | + | chr2_2:66820773-66820792 | Msa0266310:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | + | chr2_2:66820795-66820814 | Msa0266310:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | - | chr2_2:66820886-66820905 | Msa0266300:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | + | chr2_2:66820890-66820909 | Msa0266310:CDS | 30.0% |
| ATGGATAAAGATCATAAGCA+TGG | + | chr2_2:66819795-66819814 | Msa0266310:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | + | chr2_2:66819821-66819840 | Msa0266310:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | + | chr2_2:66819953-66819972 | Msa0266310:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | + | chr2_2:66819954-66819973 | Msa0266310:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | + | chr2_2:66820010-66820029 | Msa0266310:CDS | 30.0% | |
| ! | ACACATCAATGCAATTTTTG+TGG | + | chr2_2:66820206-66820225 | Msa0266310:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | + | chr2_2:66820224-66820243 | Msa0266310:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | + | chr2_2:66820292-66820311 | Msa0266310:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | + | chr2_2:66820316-66820335 | Msa0266310:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | + | chr2_2:66820493-66820512 | Msa0266310:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | + | chr2_2:66820494-66820513 | Msa0266310:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | + | chr2_2:66820550-66820569 | Msa0266310:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | - | chr2_2:66820583-66820602 | Msa0266300:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | - | chr2_2:66820584-66820603 | Msa0266300:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | + | chr2_2:66820629-66820648 | Msa0266310:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | - | chr2_2:66820733-66820752 | Msa0266300:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | + | chr2_2:66820773-66820792 | Msa0266310:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | + | chr2_2:66820795-66820814 | Msa0266310:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | - | chr2_2:66820886-66820905 | Msa0266300:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | + | chr2_2:66820890-66820909 | Msa0266310:CDS | 30.0% |
| ATTCGGAAAAGAGGATGAAA+AGG | + | chr2_2:66819838-66819857 | Msa0266310:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | + | chr2_2:66819878-66819897 | Msa0266310:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | + | chr2_2:66819942-66819961 | Msa0266310:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_2:66819986-66820005 | Msa0266300:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | - | chr2_2:66820043-66820062 | Msa0266300:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | - | chr2_2:66820044-66820063 | Msa0266300:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | + | chr2_2:66820120-66820139 | Msa0266310:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | + | chr2_2:66820160-66820179 | Msa0266310:CDS | 35.0% | |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | + | chr2_2:66820235-66820254 | Msa0266310:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | + | chr2_2:66820236-66820255 | Msa0266310:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | - | chr2_2:66820283-66820302 | Msa0266300:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | + | chr2_2:66820343-66820362 | Msa0266310:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | + | chr2_2:66820370-66820389 | Msa0266310:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_2:66819986-66820005 | Msa0266300:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | + | chr2_2:66820575-66820594 | Msa0266310:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | - | chr2_2:66820582-66820601 | Msa0266300:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | - | chr2_2:66820665-66820684 | Msa0266300:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | + | chr2_2:66820728-66820747 | Msa0266310:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | - | chr2_2:66820761-66820780 | Msa0266300:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | + | chr2_2:66820830-66820849 | Msa0266310:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | + | chr2_2:66820841-66820860 | Msa0266310:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | + | chr2_2:66820905-66820924 | Msa0266310:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | + | chr2_2:66820906-66820925 | Msa0266310:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | + | chr2_2:66821006-66821025 | Msa0266310:CDS | 35.0% | |
| ATTCGGAAAAGAGGATGAAA+AGG | + | chr2_2:66819838-66819857 | Msa0266310:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | + | chr2_2:66819878-66819897 | Msa0266310:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | + | chr2_2:66819942-66819961 | Msa0266310:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_2:66819986-66820005 | Msa0266300:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | - | chr2_2:66820043-66820062 | Msa0266300:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | - | chr2_2:66820044-66820063 | Msa0266300:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | + | chr2_2:66820120-66820139 | Msa0266310:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | + | chr2_2:66820160-66820179 | Msa0266310:CDS | 35.0% | |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | + | chr2_2:66820235-66820254 | Msa0266310:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | + | chr2_2:66820236-66820255 | Msa0266310:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | - | chr2_2:66820283-66820302 | Msa0266300:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | + | chr2_2:66820343-66820362 | Msa0266310:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | + | chr2_2:66820370-66820389 | Msa0266310:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_2:66819986-66820005 | Msa0266300:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | + | chr2_2:66820575-66820594 | Msa0266310:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | - | chr2_2:66820582-66820601 | Msa0266300:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | - | chr2_2:66820665-66820684 | Msa0266300:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | + | chr2_2:66820728-66820747 | Msa0266310:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | - | chr2_2:66820761-66820780 | Msa0266300:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | + | chr2_2:66820830-66820849 | Msa0266310:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | + | chr2_2:66820841-66820860 | Msa0266310:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | + | chr2_2:66820905-66820924 | Msa0266310:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | + | chr2_2:66820906-66820925 | Msa0266310:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | + | chr2_2:66821006-66821025 | Msa0266310:CDS | 35.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | - | chr2_2:66819832-66819851 | Msa0266300:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | + | chr2_2:66819829-66819848 | Msa0266310:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_2:66819884-66819903 | Msa0266310:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr2_2:66819924-66819943 | Msa0266310:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | + | chr2_2:66819925-66819944 | Msa0266310:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | - | chr2_2:66820042-66820061 | Msa0266300:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | - | chr2_2:66820115-66820134 | Msa0266300:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | - | chr2_2:66820268-66820287 | Msa0266300:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | - | chr2_2:66820372-66820391 | Msa0266300:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | + | chr2_2:66820369-66820388 | Msa0266310:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | + | chr2_2:66820378-66820397 | Msa0266310:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | + | chr2_2:66820418-66820437 | Msa0266310:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_2:66819884-66819903 | Msa0266310:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr2_2:66819924-66819943 | Msa0266310:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | - | chr2_2:66820695-66820714 | Msa0266300:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | + | chr2_2:66820692-66820711 | Msa0266310:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | - | chr2_2:66820699-66820718 | Msa0266300:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | + | chr2_2:66820702-66820721 | Msa0266310:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | - | chr2_2:66820812-66820831 | Msa0266300:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | + | chr2_2:66820911-66820930 | Msa0266310:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | + | chr2_2:66820965-66820984 | Msa0266310:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | + | chr2_2:66820971-66820990 | Msa0266310:CDS | 40.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | - | chr2_2:66819832-66819851 | Msa0266300:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | + | chr2_2:66819829-66819848 | Msa0266310:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_2:66819884-66819903 | Msa0266310:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr2_2:66819924-66819943 | Msa0266310:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | + | chr2_2:66819925-66819944 | Msa0266310:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | - | chr2_2:66820042-66820061 | Msa0266300:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | - | chr2_2:66820115-66820134 | Msa0266300:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | - | chr2_2:66820268-66820287 | Msa0266300:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | - | chr2_2:66820372-66820391 | Msa0266300:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | + | chr2_2:66820369-66820388 | Msa0266310:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | + | chr2_2:66820378-66820397 | Msa0266310:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | + | chr2_2:66820418-66820437 | Msa0266310:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_2:66819884-66819903 | Msa0266310:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr2_2:66819924-66819943 | Msa0266310:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | - | chr2_2:66820695-66820714 | Msa0266300:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | + | chr2_2:66820692-66820711 | Msa0266310:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | - | chr2_2:66820699-66820718 | Msa0266300:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | + | chr2_2:66820702-66820721 | Msa0266310:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | - | chr2_2:66820812-66820831 | Msa0266300:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | + | chr2_2:66820911-66820930 | Msa0266310:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | + | chr2_2:66820965-66820984 | Msa0266310:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | + | chr2_2:66820971-66820990 | Msa0266310:CDS | 40.0% | |
| !! | AGCAATGGAAAAGCATTGGG+TGG | + | chr2_2:66819957-66819976 | Msa0266310:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | + | chr2_2:66820035-66820054 | Msa0266310:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | - | chr2_2:66820114-66820133 | Msa0266300:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | + | chr2_2:66820497-66820516 | Msa0266310:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | + | chr2_2:66820815-66820834 | Msa0266310:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | + | chr2_2:66820844-66820863 | Msa0266310:CDS | 45.0% |
| !! | AGCAATGGAAAAGCATTGGG+TGG | + | chr2_2:66819957-66819976 | Msa0266310:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | + | chr2_2:66820035-66820054 | Msa0266310:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | - | chr2_2:66820114-66820133 | Msa0266300:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | + | chr2_2:66820497-66820516 | Msa0266310:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | + | chr2_2:66820815-66820834 | Msa0266310:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | + | chr2_2:66820844-66820863 | Msa0266310:CDS | 45.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_2:66819964-66819983 | Msa0266310:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | + | chr2_2:66820111-66820130 | Msa0266310:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | + | chr2_2:66820239-66820258 | Msa0266310:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_2:66819964-66819983 | Msa0266310:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | + | chr2_2:66820711-66820730 | Msa0266310:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | + | chr2_2:66820925-66820944 | Msa0266310:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | + | chr2_2:66820926-66820945 | Msa0266310:CDS | 50.0% | |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_2:66819964-66819983 | Msa0266310:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | + | chr2_2:66820111-66820130 | Msa0266310:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | + | chr2_2:66820239-66820258 | Msa0266310:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_2:66819964-66819983 | Msa0266310:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | + | chr2_2:66820711-66820730 | Msa0266310:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | + | chr2_2:66820925-66820944 | Msa0266310:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | + | chr2_2:66820926-66820945 | Msa0266310:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 66819795 | 66821033 | 66819795 | ID=Msa0266310;Name=Msa0266310 |
| chr2_2 | mRNA | 66819795 | 66821033 | 66819795 | ID=Msa0266310-mRNA-1;Parent=Msa0266310;Name=Msa0266310-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|412 |
| chr2_2 | exon | 66819795 | 66821033 | 66819795 | ID=Msa0266310-mRNA-1:exon:21271;Parent=Msa0266310-mRNA-1 |
| chr2_2 | CDS | 66819795 | 66821033 | 66819795 | ID=Msa0266310-mRNA-1:cds;Parent=Msa0266310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
