Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267610 | KEH26852.1 | 71.429 | 77 | 22 | 0 | 164 | 240 | 72 | 148 | 1.89e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267610 | A0A072UB72 | 71.429 | 77 | 22 | 0 | 164 | 240 | 72 | 148 | 9.02e-28 | 117 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0267610 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267610 | MtrunA17_Chr5g0430431 | 30.522 | 249 | 155 | 5 | 1 | 239 | 20 | 260 | 7.76e-25 | 99.0 |
| Msa0267610 | MtrunA17_Chr6g0459981 | 31.915 | 141 | 81 | 5 | 109 | 238 | 24 | 160 | 8.39e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACAAGCAAGGATTTATT+AGG | 0.154576 | 2_2:-69244037 | Msa0267610:CDS |
| TCCACATTGTTGGCAACTTC+TGG | 0.229172 | 2_2:+69243840 | None:intergenic |
| GCTATGGCTCGGTCTGTTTA+TGG | 0.249815 | 2_2:-69243657 | Msa0267610:CDS |
| GCCTTAATTGCTGGAATGTT+TGG | 0.273115 | 2_2:-69243945 | Msa0267610:CDS |
| GCCAAACATTCCAGCAATTA+AGG | 0.275848 | 2_2:+69243944 | None:intergenic |
| GATTGTTATCCGTCTTGATA+TGG | 0.282981 | 2_2:-69243997 | Msa0267610:CDS |
| CTTCTTGCTCACCTTCATCT+TGG | 0.309395 | 2_2:+69243718 | None:intergenic |
| GTAGAGTGTCTTGATTTCTT+AGG | 0.326477 | 2_2:+69244063 | None:intergenic |
| TAACAAGCAAGGATTTATTA+GGG | 0.339019 | 2_2:-69244036 | Msa0267610:CDS |
| CCCTCCTACAACATTGTTTG+TGG | 0.377527 | 2_2:-69243003 | Msa0267610:CDS |
| TACAACATTGTTTGTGGATG+TGG | 0.400608 | 2_2:-69242997 | Msa0267610:CDS |
| TAAGCTTGTCACCCTCTTGT+AGG | 0.407804 | 2_2:+69243042 | None:intergenic |
| TAATATCAATGACTTCTTGA+TGG | 0.414621 | 2_2:+69243754 | None:intergenic |
| GTGGATGATCTTGGTTGATC+TGG | 0.419207 | 2_2:-69243165 | Msa0267610:CDS |
| GCAATTTGTTTATGCTGCTA+TGG | 0.422776 | 2_2:-69243673 | Msa0267610:CDS |
| AAGAATGGTGCCTTAATTGC+TGG | 0.423495 | 2_2:-69243954 | Msa0267610:CDS |
| TTGCACTAACTCCACATTGT+TGG | 0.434351 | 2_2:+69243830 | None:intergenic |
| AACAAATTGCTCAAAGCGAT+GGG | 0.450390 | 2_2:+69243686 | None:intergenic |
| TGACAAGCTTATCTTTGAGT+TGG | 0.470099 | 2_2:-69243030 | Msa0267610:CDS |
| AAAGTGTTACATACCTCTGC+CGG | 0.480237 | 2_2:+69244174 | None:intergenic |
| TTGTTTATGCTGCTATGGCT+CGG | 0.482797 | 2_2:-69243668 | Msa0267610:CDS |
| ACATCCACAAACAATGTTGT+AGG | 0.488553 | 2_2:+69242999 | None:intergenic |
| CTTGCGAAATTCGAATATCT+AGG | 0.495048 | 2_2:-69243906 | Msa0267610:CDS |
| CGTCTTGATATGGATGACTC+TGG | 0.502279 | 2_2:-69243987 | Msa0267610:CDS |
| TGGAGGTTGAGAAAGAATAT+AGG | 0.505564 | 2_2:-69243145 | Msa0267610:CDS |
| ACAACCTCCTGCGCGACTTG+TGG | 0.513014 | 2_2:+69243792 | None:intergenic |
| AATATCAATGACTTCTTGAT+GGG | 0.513294 | 2_2:+69243755 | None:intergenic |
| GGTAACAATGAACATGTTCA+AGG | 0.514845 | 2_2:+69243881 | None:intergenic |
| AAACAAATTGCTCAAAGCGA+TGG | 0.528748 | 2_2:+69243685 | None:intergenic |
| GCTAAGAAAGTGGATGATCT+TGG | 0.529305 | 2_2:-69243174 | Msa0267610:CDS |
| TCCGTTCAGCCGTGTTTAGA+CGG | 0.534125 | 2_2:+69243120 | None:intergenic |
| ATTAGGGATCACGATGGCAG+AGG | 0.543948 | 2_2:-69244020 | Msa0267610:CDS |
| TTAGGGATCACGATGGCAGA+GGG | 0.544981 | 2_2:-69244019 | Msa0267610:CDS |
| TCTGGATTAGCATCAGCCAT+GGG | 0.547568 | 2_2:+69243858 | None:intergenic |
| TATTGACTGTGCTAAGAAAG+TGG | 0.549326 | 2_2:-69243184 | Msa0267610:CDS |
| TTTCGTAAGCATGGTGAACC+CGG | 0.556913 | 2_2:-69244193 | None:intergenic |
| TTCTTAGGAGAAAGTACCTG+TGG | 0.560267 | 2_2:-69244099 | Msa0267610:intron |
| TTCTGGATTAGCATCAGCCA+TGG | 0.566437 | 2_2:+69243857 | None:intergenic |
| TCTGGAATTTCAATGAAGAA+TGG | 0.568291 | 2_2:-69243969 | Msa0267610:CDS |
| AAACACGGCTGAACGGAACA+AGG | 0.570782 | 2_2:-69243114 | Msa0267610:CDS |
| TCAGATGAAGACCAAGATGA+AGG | 0.574883 | 2_2:-69243729 | Msa0267610:CDS |
| TTTATGGACAACCAATGGTA+AGG | 0.576804 | 2_2:-69243641 | Msa0267610:intron |
| TCCACAAACAATGTTGTAGG+AGG | 0.578109 | 2_2:+69243002 | None:intergenic |
| AAGTGTTACATACCTCTGCC+GGG | 0.579923 | 2_2:+69244175 | None:intergenic |
| AAGCATGGTGAACCCGGCAG+AGG | 0.586095 | 2_2:-69244187 | None:intergenic |
| TGAAAATCCACAAGTCGCGC+AGG | 0.590768 | 2_2:-69243799 | Msa0267610:CDS |
| GCCGTCTAAACACGGCTGAA+CGG | 0.592455 | 2_2:-69243121 | Msa0267610:CDS |
| GATGATCTTGGTTGATCTGG+AGG | 0.594823 | 2_2:-69243162 | Msa0267610:CDS |
| AGATGAAGGTGAGCAAGAAG+AGG | 0.595301 | 2_2:-69243715 | Msa0267610:CDS |
| TATTCGAATTTCGCAAGAGT+AGG | 0.596636 | 2_2:+69243912 | None:intergenic |
| ACTCTACAAATTAACAAGCA+AGG | 0.598382 | 2_2:-69244047 | Msa0267610:CDS |
| AGGTAGAATTGAAAATCCAC+AGG | 0.601572 | 2_2:+69244083 | None:intergenic |
| GTCTGTTTATGGACAACCAA+TGG | 0.604681 | 2_2:-69243646 | Msa0267610:CDS |
| TGTCACCCTCTTGTAGGCGA+CGG | 0.606670 | 2_2:+69243048 | None:intergenic |
| CAAATTGCTCAAAGCGATGG+GGG | 0.606738 | 2_2:+69243688 | None:intergenic |
| CAAAGACCGTCGCCTACAAG+AGG | 0.619952 | 2_2:-69243054 | Msa0267610:CDS |
| GTAACAATGAACATGTTCAA+GGG | 0.625828 | 2_2:+69243882 | None:intergenic |
| AAATCCACAAGTCGCGCAGG+AGG | 0.634892 | 2_2:-69243796 | Msa0267610:CDS |
| TGTTTGTGGATGTGGTGCGT+AGG | 0.638563 | 2_2:-69242989 | Msa0267610:CDS |
| ATATAGGTGCCGTCTAAACA+CGG | 0.646119 | 2_2:-69243129 | Msa0267610:CDS |
| CAGAGTCATCCATATCAAGA+CGG | 0.651142 | 2_2:+69243988 | None:intergenic |
| ACAAATTGCTCAAAGCGATG+GGG | 0.652309 | 2_2:+69243687 | None:intergenic |
| CTGGATTAGCATCAGCCATG+GGG | 0.653003 | 2_2:+69243859 | None:intergenic |
| CCACAAACAATGTTGTAGGA+GGG | 0.653871 | 2_2:+69243003 | None:intergenic |
| TCCAGAAGTTGCCAACAATG+TGG | 0.656828 | 2_2:-69243841 | Msa0267610:CDS |
| AAAGACCGTCGCCTACAAGA+GGG | 0.680199 | 2_2:-69243053 | Msa0267610:CDS |
| AACACGGCTGAACGGAACAA+GGG | 0.683539 | 2_2:-69243113 | Msa0267610:CDS |
| TGGATTAGCATCAGCCATGG+GGG | 0.691846 | 2_2:+69243860 | None:intergenic |
| GGATTTATTAGGGATCACGA+TGG | 0.729747 | 2_2:-69244026 | Msa0267610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATAAATATTATTGATA+AGG | + | chr2_2:69243561-69243580 | None:intergenic | 10.0% |
| !! | TAATATTTATTTCAAAAATG+AGG | - | chr2_2:69243567-69243586 | Msa0267610:intron | 10.0% |
| !! | TGAAATAAATATTATTGATA+AGG | + | chr2_2:69243561-69243580 | None:intergenic | 10.0% |
| !! | TAATATTTATTTCAAAAATG+AGG | - | chr2_2:69243567-69243586 | Msa0267610:intron | 10.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr2_2:69243739-69243758 | Msa0267610:CDS | 15.0% |
| !!! | TTTTTATGTGCAATATAATA+AGG | - | chr2_2:69243900-69243919 | Msa0267610:CDS | 15.0% |
| !! | AATATAACTTTGATATAATG+TGG | - | chr2_2:69243739-69243758 | Msa0267610:CDS | 15.0% |
| !!! | TTTTTATGTGCAATATAATA+AGG | - | chr2_2:69243900-69243919 | Msa0267610:CDS | 15.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr2_2:69243045-69243064 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr2_2:69243043-69243062 | Msa0267610:CDS | 20.0% |
| !! | AAATATTATTGATAAGGAGA+AGG | + | chr2_2:69243555-69243574 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr2_2:69243712-69243731 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr2_2:69243931-69243950 | None:intergenic | 20.0% |
| !! | CTAAGAACAACAAATATAAA+TGG | + | chr2_2:69243045-69243064 | None:intergenic | 20.0% |
| !!! | CATTTATATTTGTTGTTCTT+AGG | - | chr2_2:69243043-69243062 | Msa0267610:CDS | 20.0% |
| !! | AAATATTATTGATAAGGAGA+AGG | + | chr2_2:69243555-69243574 | None:intergenic | 20.0% |
| !! | CAATATTTATTAGATCAAAC+TGG | + | chr2_2:69243712-69243731 | None:intergenic | 20.0% |
| !! | AAAATGCTATACAAAAGATA+TGG | + | chr2_2:69243931-69243950 | None:intergenic | 20.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr2_2:69243120-69243139 | Msa0267610:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr2_2:69243121-69243140 | Msa0267610:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr2_2:69243405-69243424 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr2_2:69243406-69243425 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATACCTTACCAT+TGG | + | chr2_2:69243530-69243549 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr2_2:69243630-69243649 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr2_2:69243779-69243798 | Msa0267610:CDS | 25.0% |
| ! | TTAACAAGCAAGGATTTATT+AGG | - | chr2_2:69243120-69243139 | Msa0267610:CDS | 25.0% |
| ! | TAACAAGCAAGGATTTATTA+GGG | - | chr2_2:69243121-69243140 | Msa0267610:CDS | 25.0% |
| ! | AATATCAATGACTTCTTGAT+GGG | + | chr2_2:69243405-69243424 | None:intergenic | 25.0% |
| ! | TAATATCAATGACTTCTTGA+TGG | + | chr2_2:69243406-69243425 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATACCTTACCAT+TGG | + | chr2_2:69243530-69243549 | None:intergenic | 25.0% |
| ! | ATAAAACATAAGGTGGAATT+TGG | + | chr2_2:69243630-69243649 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAGTATCTTGAGT+TGG | - | chr2_2:69243779-69243798 | Msa0267610:CDS | 25.0% |
| ACTCTACAAATTAACAAGCA+AGG | - | chr2_2:69243110-69243129 | Msa0267610:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr2_2:69243188-69243207 | Msa0267610:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr2_2:69243278-69243297 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr2_2:69244059-69244078 | Msa0267610:CDS | 30.0% | |
| ACTCTACAAATTAACAAGCA+AGG | - | chr2_2:69243110-69243129 | Msa0267610:CDS | 30.0% | |
| ! | TCTGGAATTTCAATGAAGAA+TGG | - | chr2_2:69243188-69243207 | Msa0267610:CDS | 30.0% |
| GTAACAATGAACATGTTCAA+GGG | + | chr2_2:69243278-69243297 | None:intergenic | 30.0% | |
| AACAAGGGTGAAAAATCATT+GGG | - | chr2_2:69244059-69244078 | Msa0267610:CDS | 30.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr2_2:69243077-69243096 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr2_2:69243097-69243116 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr2_2:69243160-69243179 | Msa0267610:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr2_2:69243248-69243267 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr2_2:69243251-69243270 | Msa0267610:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr2_2:69243279-69243298 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr2_2:69243474-69243493 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr2_2:69243475-69243494 | None:intergenic | 35.0% | |
| ! | GCAATTTGTTTATGCTGCTA+TGG | - | chr2_2:69243484-69243503 | Msa0267610:intron | 35.0% |
| TTTATGGACAACCAATGGTA+AGG | - | chr2_2:69243516-69243535 | Msa0267610:intron | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr2_2:69243640-69243659 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr2_2:69243954-69243973 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr2_2:69243955-69243974 | None:intergenic | 35.0% |
| ! | TATTGACTGTGCTAAGAAAG+TGG | - | chr2_2:69243973-69243992 | Msa0267610:CDS | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr2_2:69244012-69244031 | Msa0267610:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr2_2:69244058-69244077 | Msa0267610:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr2_2:69244069-69244088 | Msa0267610:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr2_2:69244127-69244146 | Msa0267610:intron | 35.0% | |
| ACATCCACAAACAATGTTGT+AGG | + | chr2_2:69244161-69244180 | None:intergenic | 35.0% | |
| TACAACATTGTTTGTGGATG+TGG | - | chr2_2:69244160-69244179 | Msa0267610:intron | 35.0% | |
| AGGTAGAATTGAAAATCCAC+AGG | + | chr2_2:69243077-69243096 | None:intergenic | 35.0% | |
| ! | GTAGAGTGTCTTGATTTCTT+AGG | + | chr2_2:69243097-69243116 | None:intergenic | 35.0% |
| GATTGTTATCCGTCTTGATA+TGG | - | chr2_2:69243160-69243179 | Msa0267610:CDS | 35.0% | |
| TATTCGAATTTCGCAAGAGT+AGG | + | chr2_2:69243248-69243267 | None:intergenic | 35.0% | |
| CTTGCGAAATTCGAATATCT+AGG | - | chr2_2:69243251-69243270 | Msa0267610:intron | 35.0% | |
| GGTAACAATGAACATGTTCA+AGG | + | chr2_2:69243279-69243298 | None:intergenic | 35.0% | |
| AACAAATTGCTCAAAGCGAT+GGG | + | chr2_2:69243474-69243493 | None:intergenic | 35.0% | |
| AAACAAATTGCTCAAAGCGA+TGG | + | chr2_2:69243475-69243494 | None:intergenic | 35.0% | |
| ! | GCAATTTGTTTATGCTGCTA+TGG | - | chr2_2:69243484-69243503 | Msa0267610:intron | 35.0% |
| TTTATGGACAACCAATGGTA+AGG | - | chr2_2:69243516-69243535 | Msa0267610:intron | 35.0% | |
| TTCCATGCGCATAAAACATA+AGG | + | chr2_2:69243640-69243659 | None:intergenic | 35.0% | |
| ! | ATCTCTCTAGAAACACGATT+GGG | + | chr2_2:69243954-69243973 | None:intergenic | 35.0% |
| ! | TATCTCTCTAGAAACACGAT+TGG | + | chr2_2:69243955-69243974 | None:intergenic | 35.0% |
| ! | TATTGACTGTGCTAAGAAAG+TGG | - | chr2_2:69243973-69243992 | Msa0267610:CDS | 35.0% |
| TGGAGGTTGAGAAAGAATAT+AGG | - | chr2_2:69244012-69244031 | Msa0267610:CDS | 35.0% | |
| GAACAAGGGTGAAAAATCAT+TGG | - | chr2_2:69244058-69244077 | Msa0267610:CDS | 35.0% | |
| AAAAATCATTGGGAAGAGGA+TGG | - | chr2_2:69244069-69244088 | Msa0267610:CDS | 35.0% | |
| TGACAAGCTTATCTTTGAGT+TGG | - | chr2_2:69244127-69244146 | Msa0267610:intron | 35.0% | |
| ACATCCACAAACAATGTTGT+AGG | + | chr2_2:69244161-69244180 | None:intergenic | 35.0% | |
| TACAACATTGTTTGTGGATG+TGG | - | chr2_2:69244160-69244179 | Msa0267610:intron | 35.0% | |
| ! | AAAGTGTTACATACCTCTGC+CGG | + | chr2_2:69242986-69243005 | None:intergenic | 40.0% |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr2_2:69243058-69243077 | Msa0267610:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr2_2:69243131-69243150 | Msa0267610:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr2_2:69243172-69243191 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr2_2:69243203-69243222 | Msa0267610:intron | 40.0% | |
| GCCTTAATTGCTGGAATGTT+TGG | - | chr2_2:69243212-69243231 | Msa0267610:intron | 40.0% | |
| GCCAAACATTCCAGCAATTA+AGG | + | chr2_2:69243216-69243235 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr2_2:69243330-69243349 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr2_2:69243428-69243447 | Msa0267610:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr2_2:69243473-69243492 | None:intergenic | 40.0% | |
| TTGTTTATGCTGCTATGGCT+CGG | - | chr2_2:69243489-69243508 | Msa0267610:intron | 40.0% | |
| GTCTGTTTATGGACAACCAA+TGG | - | chr2_2:69243511-69243530 | Msa0267610:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr2_2:69243637-69243656 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr2_2:69243635-69243654 | Msa0267610:intron | 40.0% |
| GCTAAGAAAGTGGATGATCT+TGG | - | chr2_2:69243983-69244002 | Msa0267610:CDS | 40.0% | |
| ! | ATATAGGTGCCGTCTAAACA+CGG | - | chr2_2:69244028-69244047 | Msa0267610:CDS | 40.0% |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr2_2:69244065-69244084 | Msa0267610:CDS | 40.0% | |
| CCACAAACAATGTTGTAGGA+GGG | + | chr2_2:69244157-69244176 | None:intergenic | 40.0% | |
| TCCACAAACAATGTTGTAGG+AGG | + | chr2_2:69244158-69244177 | None:intergenic | 40.0% | |
| ! | AAAGTGTTACATACCTCTGC+CGG | + | chr2_2:69242986-69243005 | None:intergenic | 40.0% |
| !! | TTCTTAGGAGAAAGTACCTG+TGG | - | chr2_2:69243058-69243077 | Msa0267610:CDS | 40.0% |
| GGATTTATTAGGGATCACGA+TGG | - | chr2_2:69243131-69243150 | Msa0267610:CDS | 40.0% | |
| CAGAGTCATCCATATCAAGA+CGG | + | chr2_2:69243172-69243191 | None:intergenic | 40.0% | |
| AAGAATGGTGCCTTAATTGC+TGG | - | chr2_2:69243203-69243222 | Msa0267610:intron | 40.0% | |
| GCCTTAATTGCTGGAATGTT+TGG | - | chr2_2:69243212-69243231 | Msa0267610:intron | 40.0% | |
| GCCAAACATTCCAGCAATTA+AGG | + | chr2_2:69243216-69243235 | None:intergenic | 40.0% | |
| TTGCACTAACTCCACATTGT+TGG | + | chr2_2:69243330-69243349 | None:intergenic | 40.0% | |
| TCAGATGAAGACCAAGATGA+AGG | - | chr2_2:69243428-69243447 | Msa0267610:intron | 40.0% | |
| ACAAATTGCTCAAAGCGATG+GGG | + | chr2_2:69243473-69243492 | None:intergenic | 40.0% | |
| TTGTTTATGCTGCTATGGCT+CGG | - | chr2_2:69243489-69243508 | Msa0267610:intron | 40.0% | |
| GTCTGTTTATGGACAACCAA+TGG | - | chr2_2:69243511-69243530 | Msa0267610:intron | 40.0% | |
| CATGCGCATAAAACATAAGG+TGG | + | chr2_2:69243637-69243656 | None:intergenic | 40.0% | |
| ! | CACCTTATGTTTTATGCGCA+TGG | - | chr2_2:69243635-69243654 | Msa0267610:intron | 40.0% |
| GCTAAGAAAGTGGATGATCT+TGG | - | chr2_2:69243983-69244002 | Msa0267610:CDS | 40.0% | |
| ! | ATATAGGTGCCGTCTAAACA+CGG | - | chr2_2:69244028-69244047 | Msa0267610:CDS | 40.0% |
| GGTGAAAAATCATTGGGAAG+AGG | - | chr2_2:69244065-69244084 | Msa0267610:CDS | 40.0% | |
| CCACAAACAATGTTGTAGGA+GGG | + | chr2_2:69244157-69244176 | None:intergenic | 40.0% | |
| TCCACAAACAATGTTGTAGG+AGG | + | chr2_2:69244158-69244177 | None:intergenic | 40.0% | |
| AAGTGTTACATACCTCTGCC+GGG | + | chr2_2:69242985-69243004 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr2_2:69243170-69243189 | Msa0267610:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr2_2:69243283-69243302 | Msa0267610:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr2_2:69243302-69243321 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr2_2:69243303-69243322 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr2_2:69243316-69243335 | Msa0267610:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr2_2:69243320-69243339 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr2_2:69243442-69243461 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr2_2:69243442-69243461 | Msa0267610:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr2_2:69243472-69243491 | None:intergenic | 45.0% | |
| CAGCTCACTATGTCACATCT+TGG | + | chr2_2:69243832-69243851 | None:intergenic | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr2_2:69243992-69244011 | Msa0267610:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr2_2:69243995-69244014 | Msa0267610:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr2_2:69244118-69244137 | None:intergenic | 45.0% | |
| CCCTCCTACAACATTGTTTG+TGG | - | chr2_2:69244154-69244173 | Msa0267610:intron | 45.0% | |
| AAGTGTTACATACCTCTGCC+GGG | + | chr2_2:69242985-69243004 | None:intergenic | 45.0% | |
| CGTCTTGATATGGATGACTC+TGG | - | chr2_2:69243170-69243189 | Msa0267610:CDS | 45.0% | |
| CATGTTCATTGTTACCCCCA+TGG | - | chr2_2:69243283-69243302 | Msa0267610:intron | 45.0% | |
| !! | TCTGGATTAGCATCAGCCAT+GGG | + | chr2_2:69243302-69243321 | None:intergenic | 45.0% |
| !! | TTCTGGATTAGCATCAGCCA+TGG | + | chr2_2:69243303-69243322 | None:intergenic | 45.0% |
| TCCAGAAGTTGCCAACAATG+TGG | - | chr2_2:69243316-69243335 | Msa0267610:intron | 45.0% | |
| TCCACATTGTTGGCAACTTC+TGG | + | chr2_2:69243320-69243339 | None:intergenic | 45.0% | |
| CTTCTTGCTCACCTTCATCT+TGG | + | chr2_2:69243442-69243461 | None:intergenic | 45.0% | |
| AGATGAAGGTGAGCAAGAAG+AGG | - | chr2_2:69243442-69243461 | Msa0267610:intron | 45.0% | |
| CAAATTGCTCAAAGCGATGG+GGG | + | chr2_2:69243472-69243491 | None:intergenic | 45.0% | |
| CAGCTCACTATGTCACATCT+TGG | + | chr2_2:69243832-69243851 | None:intergenic | 45.0% | |
| GTGGATGATCTTGGTTGATC+TGG | - | chr2_2:69243992-69244011 | Msa0267610:CDS | 45.0% | |
| GATGATCTTGGTTGATCTGG+AGG | - | chr2_2:69243995-69244014 | Msa0267610:CDS | 45.0% | |
| TAAGCTTGTCACCCTCTTGT+AGG | + | chr2_2:69244118-69244137 | None:intergenic | 45.0% | |
| CCCTCCTACAACATTGTTTG+TGG | - | chr2_2:69244154-69244173 | Msa0267610:intron | 45.0% | |
| ATTAGGGATCACGATGGCAG+AGG | - | chr2_2:69243137-69243156 | Msa0267610:CDS | 50.0% | |
| TTAGGGATCACGATGGCAGA+GGG | - | chr2_2:69243138-69243157 | Msa0267610:CDS | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr2_2:69243300-69243319 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr2_2:69243301-69243320 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr2_2:69243358-69243377 | Msa0267610:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr2_2:69243500-69243519 | Msa0267610:intron | 50.0% |
| TCCGTTCAGCCGTGTTTAGA+CGG | + | chr2_2:69244040-69244059 | None:intergenic | 50.0% | |
| AAACACGGCTGAACGGAACA+AGG | - | chr2_2:69244043-69244062 | Msa0267610:CDS | 50.0% | |
| AACACGGCTGAACGGAACAA+GGG | - | chr2_2:69244044-69244063 | Msa0267610:CDS | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr2_2:69244104-69244123 | Msa0267610:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr2_2:69244168-69244187 | Msa0267610:intron | 50.0% | |
| ATTAGGGATCACGATGGCAG+AGG | - | chr2_2:69243137-69243156 | Msa0267610:CDS | 50.0% | |
| TTAGGGATCACGATGGCAGA+GGG | - | chr2_2:69243138-69243157 | Msa0267610:CDS | 50.0% | |
| !! | TGGATTAGCATCAGCCATGG+GGG | + | chr2_2:69243300-69243319 | None:intergenic | 50.0% |
| !! | CTGGATTAGCATCAGCCATG+GGG | + | chr2_2:69243301-69243320 | None:intergenic | 50.0% |
| TGAAAATCCACAAGTCGCGC+AGG | - | chr2_2:69243358-69243377 | Msa0267610:intron | 50.0% | |
| !! | GCTATGGCTCGGTCTGTTTA+TGG | - | chr2_2:69243500-69243519 | Msa0267610:intron | 50.0% |
| TCCGTTCAGCCGTGTTTAGA+CGG | + | chr2_2:69244040-69244059 | None:intergenic | 50.0% | |
| AAACACGGCTGAACGGAACA+AGG | - | chr2_2:69244043-69244062 | Msa0267610:CDS | 50.0% | |
| AACACGGCTGAACGGAACAA+GGG | - | chr2_2:69244044-69244063 | Msa0267610:CDS | 50.0% | |
| AAAGACCGTCGCCTACAAGA+GGG | - | chr2_2:69244104-69244123 | Msa0267610:intron | 50.0% | |
| TGTTTGTGGATGTGGTGCGT+AGG | - | chr2_2:69244168-69244187 | Msa0267610:intron | 50.0% | |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr2_2:69243361-69243380 | Msa0267610:intron | 55.0% | |
| GCCGTCTAAACACGGCTGAA+CGG | - | chr2_2:69244036-69244055 | Msa0267610:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr2_2:69244103-69244122 | Msa0267610:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr2_2:69244112-69244131 | None:intergenic | 55.0% | |
| AAATCCACAAGTCGCGCAGG+AGG | - | chr2_2:69243361-69243380 | Msa0267610:intron | 55.0% | |
| GCCGTCTAAACACGGCTGAA+CGG | - | chr2_2:69244036-69244055 | Msa0267610:CDS | 55.0% | |
| CAAAGACCGTCGCCTACAAG+AGG | - | chr2_2:69244103-69244122 | Msa0267610:intron | 55.0% | |
| TGTCACCCTCTTGTAGGCGA+CGG | + | chr2_2:69244112-69244131 | None:intergenic | 55.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr2_2:69243368-69243387 | None:intergenic | 60.0% | |
| ACAACCTCCTGCGCGACTTG+TGG | + | chr2_2:69243368-69243387 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 69242974 | 69244205 | 69242974 | ID=Msa0267610;Name=Msa0267610 |
| chr2_2 | mRNA | 69242974 | 69244205 | 69242974 | ID=Msa0267610-mRNA-1;Parent=Msa0267610;Name=Msa0267610-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.66|1|1|3|0|242 |
| chr2_2 | exon | 69244188 | 69244205 | 69244188 | ID=Msa0267610-mRNA-1:exon:22077;Parent=Msa0267610-mRNA-1 |
| chr2_2 | exon | 69243642 | 69244114 | 69243642 | ID=Msa0267610-mRNA-1:exon:22076;Parent=Msa0267610-mRNA-1 |
| chr2_2 | exon | 69242974 | 69243211 | 69242974 | ID=Msa0267610-mRNA-1:exon:22075;Parent=Msa0267610-mRNA-1 |
| chr2_2 | CDS | 69244188 | 69244205 | 69244188 | ID=Msa0267610-mRNA-1:cds;Parent=Msa0267610-mRNA-1 |
| chr2_2 | CDS | 69243642 | 69244114 | 69243642 | ID=Msa0267610-mRNA-1:cds;Parent=Msa0267610-mRNA-1 |
| chr2_2 | CDS | 69242974 | 69243211 | 69242974 | ID=Msa0267610-mRNA-1:cds;Parent=Msa0267610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
