AlfalfaGEDB | Msa0270930

M. sativa cultivar zhongmu-4 / Msa0270930

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270930	AES63272.2	90.909	66	5	1	1	66	1	65	2.56e-24	97.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270930	G7IPG2	90.909	66	5	1	1	66	1	65	1.22e-24	97.8

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TFs/TRs:

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Gene ID	Type	Classification
Msa0270930	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 36 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCAATACAATACAT+TGG	0.607624	2_3:+2272810	None:intergenic
AAATTTACCTTTGGACCCAT+AGG	0.510533	2_3:+2272642	None:intergenic
AAATTTGTGCAGAAGGTGGT+CGG	0.623430	2_3:+2272705	None:intergenic
AACACTCCTATGTGGCGCTC+TGG	0.449276	2_3:-2272666	Msa0270930:CDS
AGACAAGAAACACTCCTATG+TGG	0.647405	2_3:-2272674	Msa0270930:CDS
ATAGGTCCAGAGCGCCACAT+AGG	0.654562	2_3:+2272660	None:intergenic
ATGAAAATTTGTGCAGAAGG+TGG	0.644289	2_3:+2272701	None:intergenic
ATGGCATTTCTTGATCGGCA+CGG	0.620469	2_3:+2272781	None:intergenic
ATGTGGCGCTCTGGACCTAT+GGG	0.485189	2_3:-2272657	Msa0270930:CDS
CAAGAAATGCCATTGGGCGT+GGG	0.597462	2_3:-2272771	Msa0270930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTGCACTTTGTAAAAATAT+TGG	-	chr2_3:2271992-2272011	Msa0270930:intron	30.0%
CCTGCACTTTGTAAAAATAT+TGG	+	chr2_3:2271992-2272011	None:intergenic	30.0%
TTCTTCTTCAACTTCCTAAT+GGG	-	chr2_3:2272798-2272817	Msa0270930:CDS	30.0%
CCTGCACTTTGTAAAAATAT+TGG	-	chr2_3:2271992-2272011	Msa0270930:intron	30.0%
CCTGCACTTTGTAAAAATAT+TGG	+	chr2_3:2271992-2272011	None:intergenic	30.0%
TTCTTCTTCAACTTCCTAAT+GGG	-	chr2_3:2272798-2272817	Msa0270930:CDS	30.0%
ATGAAAATTTGTGCAGAAGG+TGG	+	chr2_3:2271548-2271567	None:intergenic	35.0%
GCAATGAAAATTTGTGCAGA+AGG	+	chr2_3:2271551-2271570	None:intergenic	35.0%
AAATTTACCTTTGGACCCAT+AGG	+	chr2_3:2271607-2271626	None:intergenic	35.0%
CATTAGGAAGTTGAAGAAGA+AGG	+	chr2_3:2272799-2272818	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	2271439	2272829	2271439	ID=Msa0270930;Name=Msa0270930
chr2_3	mRNA	2271439	2272829	2271439	ID=Msa0270930-mRNA-1;Parent=Msa0270930;Name=Msa0270930-mRNA-1;_AED=0.20;_eAED=0.37;_QI=0\|0\|0\|1\|1\|0.5\|2\|0\|82
chr2_3	exon	2272650	2272829	2272650	ID=Msa0270930-mRNA-1:exon:1129;Parent=Msa0270930-mRNA-1
chr2_3	exon	2271439	2271507	2271439	ID=Msa0270930-mRNA-1:exon:1128;Parent=Msa0270930-mRNA-1
chr2_3	CDS	2272650	2272829	2272650	ID=Msa0270930-mRNA-1:cds;Parent=Msa0270930-mRNA-1
chr2_3	CDS	2271439	2271507	2271439	ID=Msa0270930-mRNA-1:cds;Parent=Msa0270930-mRNA-1

Gene Sequence	>Msa0270930 ATGTATTGTATTGATTCTTTCCATGTCCGTGCCGATCAAGAAATGCCATTGGGCGTGGGACGACGTCGTTACATCAGCCGCGGACGAGCTCGTCCATCTGATCCGACCACCTTCTGCACAAATTTTCATTGCAAGACAAGAAACACTCCTATGTGGCGCTCTGGACCTATGGGTCCAAAGGTTCTGTCCCACCACCTGGAATCATGGGAGGAGATCCTTCTTCTTCAACTTCCTAATGGGTTGATTTGA
Protein sequence	>Msa0270930 MYCIDSFHVRADQEMPLGVGRRRYISRGRARPSDPTTFCTNFHCKTRNTPMWRSGPMGPKVLSHHLESWEEILLLQLPNGLI*