Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270930 | AES63272.2 | 90.909 | 66 | 5 | 1 | 1 | 66 | 1 | 65 | 2.56e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270930 | G7IPG2 | 90.909 | 66 | 5 | 1 | 1 | 66 | 1 | 65 | 1.22e-24 | 97.8 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0270930 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTCAACTTCCTAA+TGG | 0.279260 | 2_3:-2271449 | Msa0270930:CDS |
| TTCTTCTTCAACTTCCTAAT+GGG | 0.326811 | 2_3:-2271448 | Msa0270930:CDS |
| TTCCTAATGGGTTGATTTGA+GGG | 0.368304 | 2_3:-2271436 | None:intergenic |
| TATGTGGCGCTCTGGACCTA+TGG | 0.393114 | 2_3:-2272658 | Msa0270930:CDS |
| CTTCCTAATGGGTTGATTTG+AGG | 0.402282 | 2_3:-2271437 | None:intergenic |
| GGATCTCCTCCCATGATTCC+AGG | 0.423283 | 2_3:+2271471 | None:intergenic |
| TGTCCCACCACCTGGAATCA+TGG | 0.424311 | 2_3:-2271481 | Msa0270930:CDS |
| AACACTCCTATGTGGCGCTC+TGG | 0.449276 | 2_3:-2272666 | Msa0270930:CDS |
| TCAAGAAATGCCATTGGGCG+TGG | 0.452536 | 2_3:-2272772 | Msa0270930:CDS |
| TCAGGTTCTGTCCCACCACC+TGG | 0.454678 | 2_3:-2271489 | Msa0270930:intron |
| CCTCCCATGATTCCAGGTGG+TGG | 0.456756 | 2_3:+2271477 | None:intergenic |
| GGCCCTCAAATCAACCCATT+AGG | 0.480069 | 2_3:+2271434 | None:intergenic |
| ATGTGGCGCTCTGGACCTAT+GGG | 0.485189 | 2_3:-2272657 | Msa0270930:CDS |
| TTTCTTGATCGGCACGGACA+TGG | 0.499473 | 2_3:+2272787 | None:intergenic |
| GTCCCACCACCTGGAATCAT+GGG | 0.504732 | 2_3:-2271480 | Msa0270930:CDS |
| CAGAAGGTGGTCGGATCAGA+TGG | 0.507419 | 2_3:+2272714 | None:intergenic |
| AAATTTACCTTTGGACCCAT+AGG | 0.510533 | 2_3:+2272642 | None:intergenic |
| CTCCCATGATTCCAGGTGGT+GGG | 0.519420 | 2_3:+2271478 | None:intergenic |
| GCCCAATGGCATTTCTTGAT+CGG | 0.524113 | 2_3:+2272776 | None:intergenic |
| GCCGATCAAGAAATGCCATT+GGG | 0.532200 | 2_3:-2272777 | Msa0270930:CDS |
| CATTAGGAAGTTGAAGAAGA+AGG | 0.548858 | 2_3:+2271450 | None:intergenic |
| TGCCGATCAAGAAATGCCAT+TGG | 0.553175 | 2_3:-2272778 | Msa0270930:CDS |
| CGACGTCGTCCCACGCCCAA+TGG | 0.553398 | 2_3:+2272762 | None:intergenic |
| CTCTGGACCTATGGGTCCAA+AGG | 0.554114 | 2_3:-2272649 | Msa0270930:intron |
| GCAATGAAAATTTGTGCAGA+AGG | 0.580559 | 2_3:+2272698 | None:intergenic |
| CAAGAAATGCCATTGGGCGT+GGG | 0.597462 | 2_3:-2272771 | Msa0270930:CDS |
| AAAGAATCAATACAATACAT+TGG | 0.607624 | 2_3:+2272810 | None:intergenic |
| ATGGCATTTCTTGATCGGCA+CGG | 0.620469 | 2_3:+2272781 | None:intergenic |
| AAATTTGTGCAGAAGGTGGT+CGG | 0.623430 | 2_3:+2272705 | None:intergenic |
| ATGAAAATTTGTGCAGAAGG+TGG | 0.644289 | 2_3:+2272701 | None:intergenic |
| AGACAAGAAACACTCCTATG+TGG | 0.647405 | 2_3:-2272674 | Msa0270930:CDS |
| ATAGGTCCAGAGCGCCACAT+AGG | 0.654562 | 2_3:+2272660 | None:intergenic |
| CAGATGGACGAGCTCGTCCG+CGG | 0.666213 | 2_3:+2272730 | None:intergenic |
| CCACCACCTGGAATCATGGG+AGG | 0.682520 | 2_3:-2271477 | Msa0270930:CDS |
| TCTCCTCCCATGATTCCAGG+TGG | 0.693154 | 2_3:+2271474 | None:intergenic |
| CGACGTCGTTACATCAGCCG+CGG | 0.703348 | 2_3:-2272747 | Msa0270930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAGATTGTATAAATA+AGG | + | chr2_3:2272154-2272173 | None:intergenic | 10.0% |
| !!! | TAAAATAGATTTTTTTTTAG+AGG | - | chr2_3:2272446-2272465 | Msa0270930:intron | 10.0% |
| !! | ATTATTAGATTGTATAAATA+AGG | + | chr2_3:2272154-2272173 | None:intergenic | 10.0% |
| !!! | TAAAATAGATTTTTTTTTAG+AGG | - | chr2_3:2272446-2272465 | Msa0270930:intron | 10.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_3:2271636-2271655 | None:intergenic | 15.0% |
| !! | CATCTTATATATAAAAAGTA+AGG | - | chr2_3:2271689-2271708 | Msa0270930:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+TGG | - | chr2_3:2271697-2271716 | Msa0270930:intron | 15.0% |
| !!! | ATTTTTGAGACATTATTTAT+AGG | - | chr2_3:2271781-2271800 | Msa0270930:intron | 15.0% |
| !! | TTAAAAAAACACAAAACTAT+TGG | - | chr2_3:2271930-2271949 | Msa0270930:intron | 15.0% |
| !! | AAAAAAAAACACAAAACTAA+CGG | + | chr2_3:2272061-2272080 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATCTGTAACAAA+CGG | + | chr2_3:2272361-2272380 | None:intergenic | 15.0% |
| !!! | AACAAATAATTTAGTTTGTT+TGG | + | chr2_3:2272540-2272559 | None:intergenic | 15.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_3:2271636-2271655 | None:intergenic | 15.0% |
| !! | CATCTTATATATAAAAAGTA+AGG | - | chr2_3:2271689-2271708 | Msa0270930:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+TGG | - | chr2_3:2271697-2271716 | Msa0270930:intron | 15.0% |
| !!! | ATTTTTGAGACATTATTTAT+AGG | - | chr2_3:2271781-2271800 | Msa0270930:intron | 15.0% |
| !! | TTAAAAAAACACAAAACTAT+TGG | - | chr2_3:2271930-2271949 | Msa0270930:intron | 15.0% |
| !! | AAAAAAAAACACAAAACTAA+CGG | + | chr2_3:2272061-2272080 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATCTGTAACAAA+CGG | + | chr2_3:2272361-2272380 | None:intergenic | 15.0% |
| !!! | AACAAATAATTTAGTTTGTT+TGG | + | chr2_3:2272540-2272559 | None:intergenic | 15.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_3:2271884-2271903 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_3:2271888-2271907 | Msa0270930:intron | 20.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_3:2271884-2271903 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_3:2271888-2271907 | Msa0270930:intron | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr2_3:2271888-2271907 | None:intergenic | 20.0% |
| !! | TTAAAAAAGCTATAACAAAC+GGG | + | chr2_3:2272288-2272307 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGCTATAACAAA+CGG | + | chr2_3:2272289-2272308 | None:intergenic | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | + | chr2_3:2272521-2272540 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | + | chr2_3:2272522-2272541 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | - | chr2_3:2272665-2272684 | Msa0270930:CDS | 20.0% |
| !! | TTTACTACAAGAAACATATA+TGG | - | chr2_3:2272711-2272730 | Msa0270930:CDS | 20.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_3:2271884-2271903 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_3:2271888-2271907 | Msa0270930:intron | 20.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_3:2271884-2271903 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_3:2271888-2271907 | Msa0270930:intron | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr2_3:2271888-2271907 | None:intergenic | 20.0% |
| !! | TTAAAAAAGCTATAACAAAC+GGG | + | chr2_3:2272288-2272307 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGCTATAACAAA+CGG | + | chr2_3:2272289-2272308 | None:intergenic | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | + | chr2_3:2272521-2272540 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | + | chr2_3:2272522-2272541 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | - | chr2_3:2272665-2272684 | Msa0270930:CDS | 20.0% |
| !! | TTTACTACAAGAAACATATA+TGG | - | chr2_3:2272711-2272730 | Msa0270930:CDS | 20.0% |
| !!! | AAAAATTCAACTAAGTTGGT+GGG | + | chr2_3:2271767-2271786 | None:intergenic | 25.0% |
| ! | TCTCAAAAATTCAACTAAGT+TGG | + | chr2_3:2271771-2271790 | None:intergenic | 25.0% |
| ! | TTCCAAACAAAAAAAATGCA+GGG | + | chr2_3:2271856-2271875 | None:intergenic | 25.0% |
| ! | ATTCCAAACAAAAAAAATGC+AGG | + | chr2_3:2271857-2271876 | None:intergenic | 25.0% |
| !!! | GCATTTTTTTTGTTTGGAAT+TGG | - | chr2_3:2271857-2271876 | Msa0270930:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_3:2271885-2271904 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_3:2271882-2271901 | Msa0270930:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | + | chr2_3:2272079-2272098 | None:intergenic | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | + | chr2_3:2272078-2272097 | None:intergenic | 25.0% |
| ! | AAACACAAAACTATTGGTAT+TGG | - | chr2_3:2271936-2271955 | Msa0270930:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_3:2271885-2271904 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_3:2271882-2271901 | Msa0270930:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_3:2272110-2272129 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGGTAG+TGG | - | chr2_3:2271998-2272017 | Msa0270930:intron | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | - | chr2_3:2272078-2272097 | Msa0270930:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | - | chr2_3:2272079-2272098 | Msa0270930:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr2_3:2272110-2272129 | Msa0270930:intron | 25.0% |
| ! | ATAAGGTTTAAATGTGTCAT+TGG | + | chr2_3:2272137-2272156 | None:intergenic | 25.0% |
| !!! | TATTTTAATCCGTAACAAAC+GGG | - | chr2_3:2272666-2272685 | Msa0270930:CDS | 25.0% |
| !!! | AAAAATTCAACTAAGTTGGT+GGG | + | chr2_3:2271767-2271786 | None:intergenic | 25.0% |
| ! | TCTCAAAAATTCAACTAAGT+TGG | + | chr2_3:2271771-2271790 | None:intergenic | 25.0% |
| ! | TTCCAAACAAAAAAAATGCA+GGG | + | chr2_3:2271856-2271875 | None:intergenic | 25.0% |
| ! | ATTCCAAACAAAAAAAATGC+AGG | + | chr2_3:2271857-2271876 | None:intergenic | 25.0% |
| !!! | GCATTTTTTTTGTTTGGAAT+TGG | - | chr2_3:2271857-2271876 | Msa0270930:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_3:2271885-2271904 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_3:2271882-2271901 | Msa0270930:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | + | chr2_3:2272079-2272098 | None:intergenic | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | + | chr2_3:2272078-2272097 | None:intergenic | 25.0% |
| ! | AAACACAAAACTATTGGTAT+TGG | - | chr2_3:2271936-2271955 | Msa0270930:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_3:2271885-2271904 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_3:2271882-2271901 | Msa0270930:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_3:2272110-2272129 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGGTAG+TGG | - | chr2_3:2271998-2272017 | Msa0270930:intron | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | - | chr2_3:2272078-2272097 | Msa0270930:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | - | chr2_3:2272079-2272098 | Msa0270930:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr2_3:2272110-2272129 | Msa0270930:intron | 25.0% |
| ! | ATAAGGTTTAAATGTGTCAT+TGG | + | chr2_3:2272137-2272156 | None:intergenic | 25.0% |
| !!! | TATTTTAATCCGTAACAAAC+GGG | - | chr2_3:2272666-2272685 | Msa0270930:CDS | 25.0% |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_3:2271616-2271635 | None:intergenic | 30.0% |
| ! | CAAAAATTCAACTAAGTTGG+TGG | + | chr2_3:2271768-2271787 | None:intergenic | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_3:2272109-2272128 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_3:2271992-2272011 | Msa0270930:intron | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr2_3:2271992-2272011 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr2_3:2272109-2272128 | Msa0270930:intron | 30.0% |
| TTCTTCTTCAACTTCCTAAT+GGG | - | chr2_3:2272798-2272817 | Msa0270930:CDS | 30.0% | |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_3:2271616-2271635 | None:intergenic | 30.0% |
| ! | CAAAAATTCAACTAAGTTGG+TGG | + | chr2_3:2271768-2271787 | None:intergenic | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_3:2272109-2272128 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_3:2271992-2272011 | Msa0270930:intron | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr2_3:2271992-2272011 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr2_3:2272109-2272128 | Msa0270930:intron | 30.0% |
| TTCTTCTTCAACTTCCTAAT+GGG | - | chr2_3:2272798-2272817 | Msa0270930:CDS | 30.0% | |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_3:2271548-2271567 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_3:2271551-2271570 | None:intergenic | 35.0% | |
| AAATTTACCTTTGGACCCAT+AGG | + | chr2_3:2271607-2271626 | None:intergenic | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr2_3:2271825-2271844 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr2_3:2271829-2271848 | Msa0270930:intron | 35.0% |
| !!! | GTCCCTGCATTTTTTTTGTT+TGG | - | chr2_3:2271851-2271870 | Msa0270930:intron | 35.0% |
| CATTAGGAAGTTGAAGAAGA+AGG | + | chr2_3:2272799-2272818 | None:intergenic | 35.0% | |
| CTTCTTCTTCAACTTCCTAA+TGG | - | chr2_3:2272797-2272816 | Msa0270930:CDS | 35.0% | |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_3:2271548-2271567 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_3:2271551-2271570 | None:intergenic | 35.0% | |
| AAATTTACCTTTGGACCCAT+AGG | + | chr2_3:2271607-2271626 | None:intergenic | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr2_3:2271825-2271844 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr2_3:2271829-2271848 | Msa0270930:intron | 35.0% |
| !!! | GTCCCTGCATTTTTTTTGTT+TGG | - | chr2_3:2271851-2271870 | Msa0270930:intron | 35.0% |
| CATTAGGAAGTTGAAGAAGA+AGG | + | chr2_3:2272799-2272818 | None:intergenic | 35.0% | |
| CTTCTTCTTCAACTTCCTAA+TGG | - | chr2_3:2272797-2272816 | Msa0270930:CDS | 35.0% | |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_3:2271544-2271563 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_3:2271572-2271591 | Msa0270930:intron | 40.0% | |
| !! | GCATGAACATTTTGGTATGC+TGG | + | chr2_3:2271738-2271757 | None:intergenic | 40.0% |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_3:2271746-2271765 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr2_3:2271826-2271845 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr2_3:2271823-2271842 | Msa0270930:intron | 40.0% |
| CCATGTGGCATGAAATGATT+GGG | - | chr2_3:2272023-2272042 | Msa0270930:intron | 40.0% | |
| GCTTCAAATGAGAAGCTGTT+AGG | - | chr2_3:2272411-2272430 | Msa0270930:intron | 40.0% | |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_3:2271544-2271563 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_3:2271572-2271591 | Msa0270930:intron | 40.0% | |
| !! | GCATGAACATTTTGGTATGC+TGG | + | chr2_3:2271738-2271757 | None:intergenic | 40.0% |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_3:2271746-2271765 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr2_3:2271826-2271845 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr2_3:2271823-2271842 | Msa0270930:intron | 40.0% |
| CCATGTGGCATGAAATGATT+GGG | - | chr2_3:2272023-2272042 | Msa0270930:intron | 40.0% | |
| GCTTCAAATGAGAAGCTGTT+AGG | - | chr2_3:2272411-2272430 | Msa0270930:intron | 40.0% | |
| ATGGCATTTCTTGATCGGCA+CGG | + | chr2_3:2271468-2271487 | None:intergenic | 45.0% | |
| TGCCGATCAAGAAATGCCAT+TGG | - | chr2_3:2271468-2271487 | Msa0270930:CDS | 45.0% | |
| GCCGATCAAGAAATGCCATT+GGG | - | chr2_3:2271469-2271488 | Msa0270930:CDS | 45.0% | |
| GCCCAATGGCATTTCTTGAT+CGG | + | chr2_3:2271473-2271492 | None:intergenic | 45.0% | |
| !! | ATATTGGTAGTGGTGCCATG+TGG | - | chr2_3:2272008-2272027 | Msa0270930:intron | 45.0% |
| GCCATGTGGCATGAAATGAT+TGG | - | chr2_3:2272022-2272041 | Msa0270930:intron | 45.0% | |
| CCCAATCATTTCATGCCACA+TGG | + | chr2_3:2272026-2272045 | None:intergenic | 45.0% | |
| CATGAAATGATTGGGCCATG+TGG | - | chr2_3:2272031-2272050 | Msa0270930:intron | 45.0% | |
| ! | AAAACTAACGGAGTGCCACA+TGG | + | chr2_3:2272049-2272068 | None:intergenic | 45.0% |
| ATGGCATTTCTTGATCGGCA+CGG | + | chr2_3:2271468-2271487 | None:intergenic | 45.0% | |
| TGCCGATCAAGAAATGCCAT+TGG | - | chr2_3:2271468-2271487 | Msa0270930:CDS | 45.0% | |
| GCCGATCAAGAAATGCCATT+GGG | - | chr2_3:2271469-2271488 | Msa0270930:CDS | 45.0% | |
| GCCCAATGGCATTTCTTGAT+CGG | + | chr2_3:2271473-2271492 | None:intergenic | 45.0% | |
| !! | ATATTGGTAGTGGTGCCATG+TGG | - | chr2_3:2272008-2272027 | Msa0270930:intron | 45.0% |
| GCCATGTGGCATGAAATGAT+TGG | - | chr2_3:2272022-2272041 | Msa0270930:intron | 45.0% | |
| CCCAATCATTTCATGCCACA+TGG | + | chr2_3:2272026-2272045 | None:intergenic | 45.0% | |
| CATGAAATGATTGGGCCATG+TGG | - | chr2_3:2272031-2272050 | Msa0270930:intron | 45.0% | |
| ! | AAAACTAACGGAGTGCCACA+TGG | + | chr2_3:2272049-2272068 | None:intergenic | 45.0% |
| !! | AATTAAATAAAAAAGAAATT+AGG | - | chr2_3:2272171-2272190 | Msa0270930:intron | 5.0% |
| !! | AATTAAATAAAAAAGAAATT+AGG | - | chr2_3:2272171-2272190 | Msa0270930:intron | 5.0% |
| TTTCTTGATCGGCACGGACA+TGG | + | chr2_3:2271462-2271481 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_3:2271474-2271493 | Msa0270930:CDS | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_3:2271475-2271494 | Msa0270930:CDS | 50.0% | |
| ! | GCACAAAGGCCCGTTTGTTA+CGG | + | chr2_3:2272678-2272697 | None:intergenic | 50.0% |
| ATGCCACACGCATTGCACAA+AGG | + | chr2_3:2272692-2272711 | None:intergenic | 50.0% | |
| TTTCTTGATCGGCACGGACA+TGG | + | chr2_3:2271462-2271481 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_3:2271474-2271493 | Msa0270930:CDS | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_3:2271475-2271494 | Msa0270930:CDS | 50.0% | |
| ! | GCACAAAGGCCCGTTTGTTA+CGG | + | chr2_3:2272678-2272697 | None:intergenic | 50.0% |
| ATGCCACACGCATTGCACAA+AGG | + | chr2_3:2272692-2272711 | None:intergenic | 50.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_3:2271535-2271554 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_3:2271580-2271599 | Msa0270930:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_3:2271589-2271608 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_3:2271588-2271607 | Msa0270930:intron | 55.0% |
| ! | ATGTGGCGCTCTGGACCTAT+GGG | - | chr2_3:2271589-2271608 | Msa0270930:intron | 55.0% |
| CTCTGGACCTATGGGTCCAA+AGG | - | chr2_3:2271597-2271616 | Msa0270930:intron | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_3:2272765-2272784 | Msa0270930:CDS | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_3:2272766-2272785 | Msa0270930:CDS | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_3:2272771-2272790 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_3:2272775-2272794 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_3:2272778-2272797 | None:intergenic | 55.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_3:2271535-2271554 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_3:2271580-2271599 | Msa0270930:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_3:2271589-2271608 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_3:2271588-2271607 | Msa0270930:intron | 55.0% |
| ! | ATGTGGCGCTCTGGACCTAT+GGG | - | chr2_3:2271589-2271608 | Msa0270930:intron | 55.0% |
| CTCTGGACCTATGGGTCCAA+AGG | - | chr2_3:2271597-2271616 | Msa0270930:intron | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_3:2272765-2272784 | Msa0270930:CDS | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_3:2272766-2272785 | Msa0270930:CDS | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_3:2272771-2272790 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_3:2272775-2272794 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_3:2272778-2272797 | None:intergenic | 55.0% | |
| CGACGTCGTTACATCAGCCG+CGG | - | chr2_3:2271499-2271518 | Msa0270930:intron | 60.0% | |
| GGGCCTTTGTGCAATGCGTG+TGG | - | chr2_3:2272686-2272705 | Msa0270930:CDS | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_3:2272750-2272769 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_3:2272758-2272777 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_3:2272757-2272776 | Msa0270930:CDS | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_3:2272772-2272791 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_3:2272769-2272788 | Msa0270930:CDS | 60.0% | |
| CGACGTCGTTACATCAGCCG+CGG | - | chr2_3:2271499-2271518 | Msa0270930:intron | 60.0% | |
| GGGCCTTTGTGCAATGCGTG+TGG | - | chr2_3:2272686-2272705 | Msa0270930:CDS | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_3:2272750-2272769 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_3:2272758-2272777 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_3:2272757-2272776 | Msa0270930:CDS | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_3:2272772-2272791 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_3:2272769-2272788 | Msa0270930:CDS | 60.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_3:2271519-2271538 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_3:2272739-2272758 | Msa0270930:CDS | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_3:2272751-2272770 | None:intergenic | 65.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_3:2271519-2271538 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_3:2272739-2272758 | Msa0270930:CDS | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_3:2272751-2272770 | None:intergenic | 65.0% | |
| CGACGTCGTCCCACGCCCAA+TGG | + | chr2_3:2271487-2271506 | None:intergenic | 70.0% | |
| CGACGTCGTCCCACGCCCAA+TGG | + | chr2_3:2271487-2271506 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2271439 | 2272829 | 2271439 | ID=Msa0270930;Name=Msa0270930 |
| chr2_3 | mRNA | 2271439 | 2272829 | 2271439 | ID=Msa0270930-mRNA-1;Parent=Msa0270930;Name=Msa0270930-mRNA-1;_AED=0.20;_eAED=0.37;_QI=0|0|0|1|1|0.5|2|0|82 |
| chr2_3 | exon | 2272650 | 2272829 | 2272650 | ID=Msa0270930-mRNA-1:exon:1129;Parent=Msa0270930-mRNA-1 |
| chr2_3 | exon | 2271439 | 2271507 | 2271439 | ID=Msa0270930-mRNA-1:exon:1128;Parent=Msa0270930-mRNA-1 |
| chr2_3 | CDS | 2272650 | 2272829 | 2272650 | ID=Msa0270930-mRNA-1:cds;Parent=Msa0270930-mRNA-1 |
| chr2_3 | CDS | 2271439 | 2271507 | 2271439 | ID=Msa0270930-mRNA-1:cds;Parent=Msa0270930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
