AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0271370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0271370 MtrunA17_Chr2g0278511 96.811 439 2 1 1 439 1 427 0.0 877
Msa0271370 MtrunA17_Chr1g0201891 77.852 447 75 6 1 439 1 431 0.0 682
Msa0271370 MtrunA17_Chr5g0404321 54.036 446 168 12 1 439 1 416 1.89e-155 446
Msa0271370 MtrunA17_Chr2g0286441 56.743 393 135 7 49 439 34 393 3.18e-152 437
Msa0271370 MtrunA17_Chr1g0196071 51.351 444 169 10 1 439 1 402 2.25e-151 435
Msa0271370 MtrunA17_Chr8g0373001 51.810 442 180 8 1 439 1 412 1.25e-149 431
Msa0271370 MtrunA17_Chr1g0155301 48.696 460 177 10 1 439 1 422 1.17e-138 404
Msa0271370 MtrunA17_Chr2g0315641 47.938 388 142 10 54 439 42 371 2.76e-115 342
Msa0271370 MtrunA17_Chr8g0373361 41.855 442 188 15 15 432 9 405 1.15e-91 283
Msa0271370 MtrunA17_Chr2g0315651 41.582 392 162 11 54 439 37 367 3.84e-91 280
Msa0271370 MtrunA17_Chr8g0373331 36.136 440 181 14 1 432 1 348 1.10e-72 232
Msa0271370 MtrunA17_Chr1g0156151 45.575 226 105 5 1 223 1 211 9.55e-55 181
Msa0271370 MtrunA17_Chr8g0373351 32.995 394 132 12 49 431 14 286 2.78e-47 164
Msa0271370 MtrunA17_Chr8g0373341 37.657 239 87 7 1 219 1 197 2.69e-29 116
Msa0271370 MtrunA17_Chr8g0373341 45.455 99 47 2 332 429 228 320 8.32e-17 81.3
Msa0271370 MtrunA17_Chr3g0091401 36.937 111 51 2 96 206 8 99 4.26e-15 71.2
Msa0271370 MtrunA17_Chr2g0334041 40.909 110 44 5 335 438 265 359 4.29e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0271370 AT1G25280.1 71.274 463 91 15 1 439 1 445 0.0 603
Msa0271370 AT1G76900.2 68.565 474 95 12 1 439 1 455 0.0 601
Msa0271370 AT1G76900.1 68.565 474 95 12 1 439 1 455 0.0 601
Msa0271370 AT1G76900.3 68.565 474 95 12 1 439 1 455 0.0 601
Msa0271370 AT1G43640.1 66.960 454 110 8 1 439 1 429 0.0 598
Msa0271370 AT1G43640.2 68.475 387 85 6 66 439 1 363 0.0 528
Msa0271370 AT2G47900.3 53.829 444 163 8 1 439 1 407 2.63e-165 471
Msa0271370 AT2G47900.2 53.604 444 163 8 1 439 1 406 1.42e-164 469
Msa0271370 AT2G47900.1 53.604 444 163 8 1 439 1 406 1.42e-164 469
Msa0271370 AT2G18280.2 51.794 446 155 9 1 439 1 393 1.06e-145 421
Msa0271370 AT2G18280.1 51.794 446 155 9 1 439 1 393 1.06e-145 421
Msa0271370 AT1G47270.3 49.103 446 162 9 1 439 1 388 8.27e-137 398
Msa0271370 AT1G47270.1 49.103 446 162 9 1 439 26 413 1.22e-136 399
Msa0271370 AT1G47270.2 49.103 446 162 9 1 439 25 412 1.48e-136 398
Msa0271370 AT3G06380.1 50.639 391 145 8 54 439 33 380 1.14e-126 372
Msa0271370 AT1G25280.3 73.063 271 52 11 186 439 1 267 4.73e-124 361
Msa0271370 AT1G25280.2 73.063 271 52 11 186 439 1 267 4.73e-124 361
Msa0271370 AT5G18680.1 47.991 423 161 11 32 439 11 389 4.96e-124 365
Msa0271370 AT1G53320.1 47.074 393 150 8 51 439 41 379 3.39e-114 340
Msa0271370 AT5G18680.2 50.149 335 115 9 113 439 7 297 1.71e-99 300
Msa0271370 AT3G06380.2 49.541 327 118 7 117 439 5 288 1.97e-98 296
Msa0271370 AT1G61940.2 58.140 86 36 0 57 142 1 86 2.93e-31 121
Msa0271370 AT1G61940.1 60.656 61 24 0 57 117 1 61 2.85e-19 87.0

Find 158 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTAGATCTATTTATTC+TGG 0.166453 2_3:+2736374 Msa0271370:five_prime_UTR
GTTTGATTAGTTCACTTTAA+AGG 0.174467 2_3:-2739719 None:intergenic
TATGTTGTAACCTATGTATT+AGG 0.212506 2_3:+2739845 Msa0271370:three_prime_UTR
GCAGCTTTGTTAGTTGAAAA+TGG 0.215408 2_3:+2738385 Msa0271370:intron
ATCTGCAACTAACCTGTTTC+AGG 0.217420 2_3:-2737662 None:intergenic
GTGATCTAGCTTAGGAGTTT+TGG 0.235422 2_3:+2736702 Msa0271370:five_prime_UTR
TACACCAGATCAAACTTTCT+TGG 0.237446 2_3:+2738975 Msa0271370:intron
ATGACATCAAATAGTAATTC+TGG 0.251135 2_3:-2737495 None:intergenic
TATTCTTATTACTAGTGTTA+TGG 0.271731 2_3:+2739786 Msa0271370:three_prime_UTR
ATTACTAGTGTTATGGGATT+AGG 0.272229 2_3:+2739793 Msa0271370:three_prime_UTR
CGTGACGTTCGTGATAGTTT+TGG 0.276663 2_3:+2737342 Msa0271370:CDS
ATTCTTATTACTAGTGTTAT+GGG 0.301351 2_3:+2739787 Msa0271370:three_prime_UTR
CCCGCATCAAGTGCTGAATT+TGG 0.304909 2_3:-2739206 None:intergenic
CAGTCCCCGGAGGACATATA+TGG 0.310396 2_3:-2739043 None:intergenic
GTGCTTCTGTTTGCCAGTCT+TGG 0.312781 2_3:+2737574 Msa0271370:CDS
GATGCGGGCGGCTCCGTTCC+CGG 0.316477 2_3:+2739221 Msa0271370:CDS
ATGTTGTAACCTATGTATTA+GGG 0.318091 2_3:+2739846 Msa0271370:three_prime_UTR
CAGAATAATCTTATCATGTT+CGG 0.319403 2_3:-2739555 None:intergenic
GCTTCCACCCAACCACCTGC+TGG 0.321946 2_3:+2739503 Msa0271370:CDS
GCCGTCATCATCCTCATTAC+AGG 0.338459 2_3:-2739360 None:intergenic
ACAAAAGAGATACTTATTCT+TGG 0.352074 2_3:+2737284 Msa0271370:five_prime_UTR
TTGTAATTCAAAATAGTTGC+TGG 0.356421 2_3:+2737460 Msa0271370:CDS
GTGAATTAGCTCTGGCTGTC+CGG 0.359818 2_3:-2739240 None:intergenic
TCATTCAATGCTTTATCAAA+AGG 0.375284 2_3:+2737807 Msa0271370:CDS
CATATATGTCCTCCGGGGAC+TGG 0.388613 2_3:+2739044 Msa0271370:CDS
CAAAAGAGATACTTATTCTT+GGG 0.392034 2_3:+2737285 Msa0271370:five_prime_UTR
ACATATATGGGCAGAAGTGC+AGG 0.394714 2_3:-2739030 None:intergenic
GTTAGTTTGCCGCAGAACTC+TGG 0.395072 2_3:-2737627 None:intergenic
TTCTGCAATTCGGCAAAGTT+GGG 0.396243 2_3:+2739573 Msa0271370:CDS
AATTACTATTTGATGTCATT+CGG 0.397064 2_3:+2737499 Msa0271370:CDS
AAAGCTTGGAATGCAGATAA+AGG 0.399095 2_3:-2739626 None:intergenic
TTACTCGTCCCCGAAAATTA+AGG 0.402869 2_3:-2739448 None:intergenic
ATTCCCTGTGTCCCTGAAAC+AGG 0.406088 2_3:+2737650 Msa0271370:CDS
TTCTGCCCATATATGTCCTC+CGG 0.408726 2_3:+2739037 Msa0271370:CDS
CTTCCACCCAACCACCTGCT+GGG 0.409907 2_3:+2739504 Msa0271370:CDS
AGAGAGTGAGAGAGAGATGA+TGG 0.410561 2_3:+2736246 Msa0271370:five_prime_UTR
TCTCTAGATCTATTTATTCT+GGG 0.410645 2_3:+2736375 Msa0271370:five_prime_UTR
CACTGAGTATGTTATTTCAA+TGG 0.410829 2_3:+2738450 Msa0271370:CDS
GTGAGAATACTTGGCCTTCA+AGG 0.416059 2_3:+2737535 Msa0271370:CDS
TCGGCGCCCCAGCAGGTGGT+TGG 0.419959 2_3:-2739511 None:intergenic
AGAGAGATGATGGAGGTGTA+AGG 0.420767 2_3:+2736256 Msa0271370:five_prime_UTR
TTGTACCAACAAACTATCAT+AGG 0.420863 2_3:+2739945 Msa0271370:three_prime_UTR
CTTCTGTTTGCCAGTCTTGG+AGG 0.420970 2_3:+2737577 Msa0271370:CDS
AAAGTGAACTAATCAAACTT+TGG 0.428598 2_3:+2739724 Msa0271370:three_prime_UTR
TGTAATTGTTCATGCCATCT+TGG 0.429018 2_3:-2739416 None:intergenic
CTCAGTGTAGGTTGTTCTCC+TGG 0.432833 2_3:-2738434 None:intergenic
AGCAGAAAGAGAAAAGCTTT+AGG 0.438219 2_3:-2736304 None:intergenic
CATAACCTATGATAGTTTGT+TGG 0.438282 2_3:-2739950 None:intergenic
TAACTCCCAGATGGGACCTT+TGG 0.438868 2_3:-2739101 None:intergenic
GCAACTACATGCTTCCTTGA+AGG 0.442687 2_3:-2737549 None:intergenic
TGCTCCGGAACGAGTCCTCC+AGG 0.444143 2_3:-2739268 None:intergenic
GTATCGCCAAAGGTCCCATC+TGG 0.445185 2_3:+2739095 Msa0271370:CDS
GATGGTGTCGGCGCCCCAGC+AGG 0.447033 2_3:-2739518 None:intergenic
GATAAGATTATTCTGCAATT+CGG 0.448717 2_3:+2739563 Msa0271370:CDS
CGGCGCCCCAGCAGGTGGTT+GGG 0.449066 2_3:-2739510 None:intergenic
AGAATAATCTTATCATGTTC+GGG 0.450318 2_3:-2739554 None:intergenic
ATTCTGCAATTCGGCAAAGT+TGG 0.451251 2_3:+2739572 Msa0271370:CDS
ATATATGTCCTCCGGGGACT+GGG 0.453188 2_3:+2739045 Msa0271370:CDS
TGACATCAAATAGTAATTCT+GGG 0.457179 2_3:-2737494 None:intergenic
TAATGCAATGCATCTTCCTT+GGG 0.462060 2_3:-2739172 None:intergenic
CATTCAATGCTTTATCAAAA+GGG 0.462254 2_3:+2737808 Msa0271370:CDS
AATTGTTCATGCCATCTTGG+AGG 0.466985 2_3:-2739413 None:intergenic
TGCTTTAAACCCTAATACAT+AGG 0.469426 2_3:-2739855 None:intergenic
GTAAGCGAAGAGTGTTTACC+AGG 0.470641 2_3:-2737872 None:intergenic
CAGGGCTCAGACAAAGGTAT+AGG 0.479017 2_3:-2737853 None:intergenic
TGACGGCAAGATGAGACCTT+TGG 0.479423 2_3:+2739376 Msa0271370:CDS
TCTGCCCATATATGTCCTCC+GGG 0.481297 2_3:+2739038 Msa0271370:CDS
TGAATTAGCTCTGGCTGTCC+GGG 0.484556 2_3:-2739239 None:intergenic
TAGAGGAGAGTGAGAATACT+TGG 0.484573 2_3:+2737526 Msa0271370:CDS
GGTGCTTTGTGATCTAGCTT+AGG 0.486239 2_3:+2736694 Msa0271370:five_prime_UTR
ATAATGCAATGCATCTTCCT+TGG 0.491165 2_3:-2739173 None:intergenic
AAACTATTCACAAGCCAACT+TGG 0.491824 2_3:-2739675 None:intergenic
TTATCATGTTCGGGTGGTGC+TGG 0.495403 2_3:-2739545 None:intergenic
TTAAGCATATTGCAAAAGCT+TGG 0.496726 2_3:-2739640 None:intergenic
GTTCCCTGGAGGACTCGTTC+CGG 0.496788 2_3:+2739264 Msa0271370:CDS
ATGATTCCGTCTCGTGGCCC+TGG 0.498403 2_3:-2737788 None:intergenic
ACGGAAAGACATTCCGTAGT+AGG 0.498794 2_3:-2737310 None:intergenic
TCCTCTCTGCTAAGAGGACC+AGG 0.507703 2_3:+2738416 Msa0271370:CDS
TCTCAGCTTCATACAATACA+AGG 0.508701 2_3:+2736350 Msa0271370:five_prime_UTR
TTAGTTTGCCGCAGAACTCT+GGG 0.509843 2_3:-2737626 None:intergenic
AAAGTCTCATGGTTCTGTAC+AGG 0.510601 2_3:+2737419 Msa0271370:CDS
TGTAATTCAAAATAGTTGCT+GGG 0.513418 2_3:+2737461 Msa0271370:CDS
AGAGCTAATTCACCGTTCCC+TGG 0.515311 2_3:+2739250 Msa0271370:CDS
ACCAAATTCAGCACTTGATG+CGG 0.517901 2_3:+2739205 Msa0271370:CDS
ACTTCGAAAATGAGATGCTC+CGG 0.519823 2_3:-2739283 None:intergenic
TTATTCTTGGGATCCTACTA+CGG 0.524847 2_3:+2737297 Msa0271370:five_prime_UTR
CGCCCCAGCAGGTGGTTGGG+TGG 0.525317 2_3:-2739507 None:intergenic
AGGGAACGGTGAATTAGCTC+TGG 0.526856 2_3:-2739248 None:intergenic
TGATGGCAGCATATGCGTAC+TGG 0.529569 2_3:+2737237 Msa0271370:intron
TATGATAGTTTGTTGGTACA+AGG 0.530612 2_3:-2739943 None:intergenic
TAGCTCTGGCTGTCCGGGAA+CGG 0.532391 2_3:-2739234 None:intergenic
GAGACTTTCCTCTATGATGA+TGG 0.534079 2_3:-2737404 None:intergenic
TGCACATATTCCTCCAAGAC+TGG 0.534318 2_3:-2737587 None:intergenic
TATATACCCACTAGGTAACT+AGG 0.535246 2_3:-2737896 None:intergenic
AATTCCTCCTCTCTGCTAAG+AGG 0.537777 2_3:+2738410 Msa0271370:CDS
TTCCACCCAACCACCTGCTG+GGG 0.546085 2_3:+2739505 Msa0271370:CDS
GTTTACCAGGGCTCAGACAA+AGG 0.547523 2_3:-2737859 None:intergenic
GGTGCTGGTTGAGATGGTGT+CGG 0.550204 2_3:-2739530 None:intergenic
CCAAATTCAGCACTTGATGC+GGG 0.550546 2_3:+2739206 Msa0271370:CDS
GGTGTCGGCGCCCCAGCAGG+TGG 0.552680 2_3:-2739515 None:intergenic
AACTAATCAAACTTTGGTGA+TGG 0.552884 2_3:+2739730 Msa0271370:three_prime_UTR
CAATCGAGTTCAGCAGTGCA+CGG 0.554602 2_3:+2739318 Msa0271370:CDS
AAGCAGCTTTGACACCAAGT+TGG 0.560190 2_3:+2739661 Msa0271370:CDS
CGGCTCGTCTTCCCAGTCCC+CGG 0.560397 2_3:-2739056 None:intergenic
TCGGGTGGTGCTGGTTGAGA+TGG 0.560858 2_3:-2739536 None:intergenic
AGTCCCCGGAGGACATATAT+GGG 0.561123 2_3:-2739042 None:intergenic
CTATACCTTTGTCTGAGCCC+TGG 0.566295 2_3:+2737854 Msa0271370:CDS
TTTAATAATGAAGCAAAGAG+AGG 0.567357 2_3:+2739696 Msa0271370:three_prime_UTR
TCTCTCCTCACTCTTGTACC+CGG 0.570202 2_3:-2736212 None:intergenic
AGATCAAGTAATACTTACAT+TGG 0.570296 2_3:+2738490 Msa0271370:CDS
ACATATGAACTAAATGTGCT+CGG 0.570299 2_3:+2739140 Msa0271370:CDS
CTAAATGTGCTCGGAACTCG+AGG 0.572448 2_3:+2739149 Msa0271370:CDS
CTAACCTGTTTCAGGGACAC+AGG 0.573911 2_3:-2737654 None:intergenic
TCTGCAACTAACCTGTTTCA+GGG 0.575798 2_3:-2737661 None:intergenic
GAGTGAGAGAGAGATGATGG+AGG 0.581999 2_3:+2736249 Msa0271370:five_prime_UTR
GTACAAGGATAACATGGCCT+TGG 0.582730 2_3:-2739928 None:intergenic
TGGGAGTTACAACATAGCTC+AGG 0.584581 2_3:+2739115 Msa0271370:CDS
CTTACTGGCCATCATCATAG+AGG 0.586395 2_3:+2737396 Msa0271370:CDS
GACATCAAATAGTAATTCTG+GGG 0.586583 2_3:-2737493 None:intergenic
GGCATGAACAATTACAGTGC+TGG 0.588906 2_3:+2739423 Msa0271370:CDS
TGATGTCATTCGGCGACTAG+AGG 0.590244 2_3:+2737509 Msa0271370:CDS
GGAACGAGTCCTCCAGGGAA+CGG 0.592037 2_3:-2739262 None:intergenic
CATTAGATTCATGCGTACCA+AGG 0.593763 2_3:+2739911 Msa0271370:three_prime_UTR
CATCATAGAGGAAAGTCTCA+TGG 0.596493 2_3:+2737408 Msa0271370:CDS
TGAAATAACATACTCAGTGT+AGG 0.597863 2_3:-2738446 None:intergenic
TAAAGGATATCGATAATCCA+TGG 0.599763 2_3:-2739609 None:intergenic
GCTATGTTGTAACTCCCAGA+TGG 0.603839 2_3:-2739110 None:intergenic
TGAGTCCGGGTACAAGAGTG+AGG 0.606393 2_3:+2736207 Msa0271370:five_prime_UTR
CATTGAATGATTCCGTCTCG+TGG 0.607917 2_3:-2737794 None:intergenic
CTATGTTGTAACTCCCAGAT+GGG 0.609999 2_3:-2739109 None:intergenic
TGCTCGGAACTCGAGGCCCA+AGG 0.612968 2_3:+2739156 Msa0271370:CDS
TATCGCCAAAGGTCCCATCT+GGG 0.614613 2_3:+2739096 Msa0271370:CDS
TTTCAGCCAGGGCCACGAGA+CGG 0.619741 2_3:+2737782 Msa0271370:intron
GAACGTCACGAACTATGCTA+CGG 0.624312 2_3:-2737329 None:intergenic
TAACCTGTTTCAGGGACACA+GGG 0.626828 2_3:-2737653 None:intergenic
TCCTGGTCCTCTTAGCAGAG+AGG 0.627316 2_3:-2738417 None:intergenic
CATATATGGGCAGAAGTGCA+GGG 0.629040 2_3:-2739029 None:intergenic
TCCTGTAATGAGGATGATGA+CGG 0.629322 2_3:+2739359 Msa0271370:CDS
CTTACGCCTAGTTACCTAGT+GGG 0.632166 2_3:+2737890 Msa0271370:CDS
GTCTTGGAGGAATATGTGCA+AGG 0.636885 2_3:+2737590 Msa0271370:CDS
TTGTTGGTACAAGGATAACA+TGG 0.638167 2_3:-2739934 None:intergenic
TGGGAAAGATATGTTCACCA+TGG 0.642687 2_3:+2739592 Msa0271370:CDS
GTTAAGAGCCCAGAGTTCTG+CGG 0.649777 2_3:+2737618 Msa0271370:CDS
TGGTCCTCTTAGCAGAGAGG+AGG 0.654986 2_3:-2738414 None:intergenic
GCTCCGGAACGAGTCCTCCA+GGG 0.659722 2_3:-2739267 None:intergenic
GCTTACGCCTAGTTACCTAG+TGG 0.663697 2_3:+2737889 Msa0271370:CDS
ATACTTACATTGGAAAACTG+AGG 0.671640 2_3:+2738500 Msa0271370:CDS
TAAAACCATATATACCCACT+AGG 0.673177 2_3:-2737904 None:intergenic
ACATCAAATAGTAATTCTGG+GGG 0.673779 2_3:-2737492 None:intergenic
AATTCAGCACTTGATGCGGG+CGG 0.674604 2_3:+2739209 Msa0271370:CDS
GGCAGCATATGCGTACTGGT+TGG 0.678156 2_3:+2737241 Msa0271370:intron
CAGCATCTGAGCAATAACAA+TGG 0.687773 2_3:-2739816 None:intergenic
ATAATCTTATCATGTTCGGG+TGG 0.690693 2_3:-2739551 None:intergenic
CTCGTCTTCCCAGTCCCCGG+AGG 0.692752 2_3:-2739053 None:intergenic
GCTAATTCACCGTTCCCTGG+AGG 0.694493 2_3:+2739253 Msa0271370:CDS
TAAGCGAAGAGTGTTTACCA+GGG 0.730393 2_3:-2737871 None:intergenic
CTGCCCATATATGTCCTCCG+GGG 0.741928 2_3:+2739039 Msa0271370:CDS
ATATGGGCAGAAGTGCAGGG+AGG 0.788147 2_3:-2739026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAAAAAAAAAAACTT+TGG - chr2_3:2736419-2736438 None:intergenic 10.0%
!! AAATACATAAAAAATTATCT+TGG - chr2_3:2736510-2736529 None:intergenic 10.0%
!!! CTTTTAAAAATCTAATTTTT+AGG + chr2_3:2736535-2736554 Msa0271370:intron 10.0%
!!! ATTAGATTTTATATTGTTTA+TGG - chr2_3:2736938-2736957 None:intergenic 10.0%
!!! AATATTTAAACATTTTAAGT+TGG - chr2_3:2737046-2737065 None:intergenic 10.0%
!! AAAAAAAAAAACTTTGGATT+TGG - chr2_3:2736413-2736432 None:intergenic 15.0%
!!! AAATCTAATTTTTAGGTTTT+TGG + chr2_3:2736542-2736561 Msa0271370:intron 15.0%
!! GTATGTAAATATTGAAATAT+CGG + chr2_3:2737106-2737125 Msa0271370:intron 15.0%
!!! ATTGTGTTTTGTAGATAAAA+AGG + chr2_3:2736672-2736691 Msa0271370:intron 20.0%
!!! TTGTGTTTTGTAGATAAAAA+GGG + chr2_3:2736673-2736692 Msa0271370:intron 20.0%
!!! TATTTTTTGCATTTGATTCA+TGG + chr2_3:2737062-2737081 Msa0271370:intron 20.0%
!!! CTTAGTTTTTGATAGTATTT+TGG + chr2_3:2737147-2737166 Msa0271370:intron 20.0%
!! AATTACTATTTGATGTCATT+CGG + chr2_3:2737499-2737518 Msa0271370:CDS 20.0%
!! TGAAATAACAACAATAGTTA+AGG + chr2_3:2737726-2737745 Msa0271370:intron 20.0%
!! TTTCAAAATTTAAGCAGTTT+AGG + chr2_3:2737975-2737994 Msa0271370:intron 20.0%
!! AAAGTAAATAAAATTGAAGC+AGG - chr2_3:2738358-2738377 None:intergenic 20.0%
!!! CTATGTTAAAAACTTCTTTT+CGG + chr2_3:2738563-2738582 Msa0271370:intron 20.0%
!! CATAAGTGGAAAATTATTTA+TGG - chr2_3:2738840-2738859 None:intergenic 20.0%
!!! ATACCTTTTTAGAAAATCTA+CGG - chr2_3:2739079-2739098 None:intergenic 20.0%
!! TATTCTTATTACTAGTGTTA+TGG + chr2_3:2739786-2739805 Msa0271370:three_prime_UTR 20.0%
!! ATTCTTATTACTAGTGTTAT+GGG + chr2_3:2739787-2739806 Msa0271370:three_prime_UTR 20.0%
!!! TTGAATGAAATTTTTGAGTC+CGG + chr2_3:2736193-2736212 Msa0271370:five_prime_UTR 25.0%
! TTCTCTAGATCTATTTATTC+TGG + chr2_3:2736374-2736393 Msa0271370:five_prime_UTR 25.0%
! TCTCTAGATCTATTTATTCT+GGG + chr2_3:2736375-2736394 Msa0271370:five_prime_UTR 25.0%
! AATTTGTAAGCATAGTAATG+AGG + chr2_3:2736569-2736588 Msa0271370:intron 25.0%
! TTAAACAAGATTGTGTGATT+TGG + chr2_3:2736624-2736643 Msa0271370:intron 25.0%
!!! ATTAACTAGCAAGTTTTATG+AGG + chr2_3:2736734-2736753 Msa0271370:five_prime_UTR 25.0%
! CTAAAGTTGCATATATCAAA+GGG - chr2_3:2736851-2736870 None:intergenic 25.0%
! ACTAAAGTTGCATATATCAA+AGG - chr2_3:2736852-2736871 None:intergenic 25.0%
! TTGATATATGCAACTTTAGT+TGG + chr2_3:2736852-2736871 Msa0271370:intron 25.0%
! AATAATTTATTTGCCTCGTA+AGG + chr2_3:2736908-2736927 Msa0271370:intron 25.0%
!!! ATTGTTTTGATTCTACTTAG+GGG - chr2_3:2736997-2737016 None:intergenic 25.0%
!!! CATTGTTTTGATTCTACTTA+GGG - chr2_3:2736998-2737017 None:intergenic 25.0%
!!! GTTTTTGATAGTATTTTGGT+AGG + chr2_3:2737151-2737170 Msa0271370:intron 25.0%
! ACAAAAGAGATACTTATTCT+TGG + chr2_3:2737284-2737303 Msa0271370:five_prime_UTR 25.0%
! CAAAAGAGATACTTATTCTT+GGG + chr2_3:2737285-2737304 Msa0271370:five_prime_UTR 25.0%
!!! CAACTATTTTGAATTACAAG+AGG - chr2_3:2737459-2737478 None:intergenic 25.0%
! TTGTAATTCAAAATAGTTGC+TGG + chr2_3:2737460-2737479 Msa0271370:CDS 25.0%
! TGTAATTCAAAATAGTTGCT+GGG + chr2_3:2737461-2737480 Msa0271370:CDS 25.0%
! TGACATCAAATAGTAATTCT+GGG - chr2_3:2737497-2737516 None:intergenic 25.0%
! ATGACATCAAATAGTAATTC+TGG - chr2_3:2737498-2737517 None:intergenic 25.0%
! TCATTCAATGCTTTATCAAA+AGG + chr2_3:2737807-2737826 Msa0271370:CDS 25.0%
! CATTCAATGCTTTATCAAAA+GGG + chr2_3:2737808-2737827 Msa0271370:CDS 25.0%
!!! GTTTAATTTGAGATCTACTT+TGG + chr2_3:2738072-2738091 Msa0271370:intron 25.0%
!!! AACATCTCATTTTTATGCAT+CGG - chr2_3:2738125-2738144 None:intergenic 25.0%
! AAATATTCATGGAATGACAA+CGG - chr2_3:2738155-2738174 None:intergenic 25.0%
! CAAAGGGAAATAAATATTCA+TGG - chr2_3:2738166-2738185 None:intergenic 25.0%
! AGATCAAGTAATACTTACAT+TGG + chr2_3:2738490-2738509 Msa0271370:CDS 25.0%
!!! TTAAAATGCGTTTTGATAGT+CGG - chr2_3:2738640-2738659 None:intergenic 25.0%
!!! GATTCTTCTGTTTTACTTTT+GGG - chr2_3:2738665-2738684 None:intergenic 25.0%
!! TGATTCTTCTGTTTTACTTT+TGG - chr2_3:2738666-2738685 None:intergenic 25.0%
!! TCTTTTATCGTCATATGTTT+AGG + chr2_3:2738736-2738755 Msa0271370:intron 25.0%
! TGTGTTGTAACTGTTATTAT+CGG + chr2_3:2738785-2738804 Msa0271370:intron 25.0%
! AGAATAATCTTATCATGTTC+GGG - chr2_3:2739557-2739576 None:intergenic 25.0%
! CAGAATAATCTTATCATGTT+CGG - chr2_3:2739558-2739577 None:intergenic 25.0%
! GATAAGATTATTCTGCAATT+CGG + chr2_3:2739563-2739582 Msa0271370:CDS 25.0%
! TTTAATAATGAAGCAAAGAG+AGG + chr2_3:2739696-2739715 Msa0271370:three_prime_UTR 25.0%
!! GTTTGATTAGTTCACTTTAA+AGG - chr2_3:2739722-2739741 None:intergenic 25.0%
! AAAGTGAACTAATCAAACTT+TGG + chr2_3:2739724-2739743 Msa0271370:three_prime_UTR 25.0%
! GACAGATAGATATAAAAACA+AGG - chr2_3:2739765-2739784 None:intergenic 25.0%
! TATGTTGTAACCTATGTATT+AGG + chr2_3:2739845-2739864 Msa0271370:three_prime_UTR 25.0%
! ATGTTGTAACCTATGTATTA+GGG + chr2_3:2739846-2739865 Msa0271370:three_prime_UTR 25.0%
!!! TGAATGAAATTTTTGAGTCC+GGG + chr2_3:2736194-2736213 Msa0271370:five_prime_UTR 30.0%
! TTCTTCAAATCTGAAGTCTT+TGG + chr2_3:2736460-2736479 Msa0271370:intron 30.0%
AAGCATAATGTAAGAGATGA+AGG - chr2_3:2736771-2736790 None:intergenic 30.0%
!!! TTGTTTTGATTCTACTTAGG+GGG - chr2_3:2736996-2737015 None:intergenic 30.0%
!!! GCATTGTTTTGATTCTACTT+AGG - chr2_3:2736999-2737018 None:intergenic 30.0%
!! AGTTTTGATGTCAAACTTAC+TGG + chr2_3:2737381-2737400 Msa0271370:CDS 30.0%
ACATCAAATAGTAATTCTGG+GGG - chr2_3:2737495-2737514 None:intergenic 30.0%
GACATCAAATAGTAATTCTG+GGG - chr2_3:2737496-2737515 None:intergenic 30.0%
TAAAACCATATATACCCACT+AGG - chr2_3:2737907-2737926 None:intergenic 30.0%
CTGTTTGATATCCATTATGT+CGG + chr2_3:2738213-2738232 Msa0271370:intron 30.0%
!!! ACTTCTAAAGTTTTGATGCT+AGG + chr2_3:2738292-2738311 Msa0271370:intron 30.0%
!!! CTTCTAAAGTTTTGATGCTA+GGG + chr2_3:2738293-2738312 Msa0271370:intron 30.0%
TGAAATAACATACTCAGTGT+AGG - chr2_3:2738449-2738468 None:intergenic 30.0%
!! CACTGAGTATGTTATTTCAA+TGG + chr2_3:2738450-2738469 Msa0271370:CDS 30.0%
ATACTTACATTGGAAAACTG+AGG + chr2_3:2738500-2738519 Msa0271370:CDS 30.0%
TTAACATAGTAGATGAGAGA+AGG - chr2_3:2738552-2738571 None:intergenic 30.0%
AAGTTGCAATGAATTTCAGT+TGG + chr2_3:2738697-2738716 Msa0271370:intron 30.0%
GAAGATATGAATAGCAAACA+AGG - chr2_3:2738876-2738895 None:intergenic 30.0%
AACAGAAAAAACTCAGCAAA+TGG - chr2_3:2738903-2738922 None:intergenic 30.0%
ACATATGAACTAAATGTGCT+CGG + chr2_3:2739140-2739159 Msa0271370:CDS 30.0%
TAAAGGATATCGATAATCCA+TGG - chr2_3:2739612-2739631 None:intergenic 30.0%
TTAAGCATATTGCAAAAGCT+TGG - chr2_3:2739643-2739662 None:intergenic 30.0%
AACTAATCAAACTTTGGTGA+TGG + chr2_3:2739730-2739749 Msa0271370:three_prime_UTR 30.0%
ATTACTAGTGTTATGGGATT+AGG + chr2_3:2739793-2739812 Msa0271370:three_prime_UTR 30.0%
! TGCTTTAAACCCTAATACAT+AGG - chr2_3:2739858-2739877 None:intergenic 30.0%
!! TATGATAGTTTGTTGGTACA+AGG - chr2_3:2739946-2739965 None:intergenic 30.0%
TTGTACCAACAAACTATCAT+AGG + chr2_3:2739945-2739964 Msa0271370:three_prime_UTR 30.0%
! CATAACCTATGATAGTTTGT+TGG - chr2_3:2739953-2739972 None:intergenic 30.0%
AGCAGAAAGAGAAAAGCTTT+AGG - chr2_3:2736307-2736326 None:intergenic 35.0%
! AAGCTTTTCTCTTTCTGCTT+TGG + chr2_3:2736308-2736327 Msa0271370:five_prime_UTR 35.0%
TCTCAGCTTCATACAATACA+AGG + chr2_3:2736350-2736369 Msa0271370:five_prime_UTR 35.0%
TTTGCATTTGATTCATGGCT+AGG + chr2_3:2737067-2737086 Msa0271370:intron 35.0%
ATATCGGAAGCTTTCTGATT+TGG + chr2_3:2737122-2737141 Msa0271370:intron 35.0%
GAACTGATACTCTTCTTTGA+TGG + chr2_3:2737220-2737239 Msa0271370:intron 35.0%
! TCTCTTTTGTGAACTTCTGA+TGG - chr2_3:2737274-2737293 None:intergenic 35.0%
TTATTCTTGGGATCCTACTA+CGG + chr2_3:2737297-2737316 Msa0271370:five_prime_UTR 35.0%
!!! ATAGTTTTGGGAGCTTATCT+AGG + chr2_3:2737355-2737374 Msa0271370:CDS 35.0%
TATATACCCACTAGGTAACT+AGG - chr2_3:2737899-2737918 None:intergenic 35.0%
! AGTTACCTAGTGGGTATATA+TGG + chr2_3:2737899-2737918 Msa0271370:intron 35.0%
! GTTTTATGTTCAGATGCTTC+TGG + chr2_3:2737921-2737940 Msa0271370:intron 35.0%
! TTCCCTTTGTGATTGATTCT+AGG + chr2_3:2738177-2738196 Msa0271370:intron 35.0%
CTCCTAGAATCAATCACAAA+GGG - chr2_3:2738182-2738201 None:intergenic 35.0%
ACTCCTAGAATCAATCACAA+AGG - chr2_3:2738183-2738202 None:intergenic 35.0%
TTTGATATCCATTATGTCGG+AGG + chr2_3:2738216-2738235 Msa0271370:intron 35.0%
TTGATATCCATTATGTCGGA+GGG + chr2_3:2738217-2738236 Msa0271370:intron 35.0%
!! GCAGCTTTGTTAGTTGAAAA+TGG + chr2_3:2738385-2738404 Msa0271370:intron 35.0%
GTTGTAACTGTTATTATCGG+AGG + chr2_3:2738788-2738807 Msa0271370:intron 35.0%
TCGGAGGTAATAAATAGTCT+AGG + chr2_3:2738804-2738823 Msa0271370:intron 35.0%
CGGAGGTAATAAATAGTCTA+GGG + chr2_3:2738805-2738824 Msa0271370:intron 35.0%
GAATATCAGCATCACATAAG+TGG - chr2_3:2738854-2738873 None:intergenic 35.0%
TACACCAGATCAAACTTTCT+TGG + chr2_3:2738975-2738994 Msa0271370:intron 35.0%
TGTTCCAAGAAAGTTTGATC+TGG - chr2_3:2738982-2739001 None:intergenic 35.0%
!! GAGCCGTAGATTTTCTAAAA+AGG + chr2_3:2739073-2739092 Msa0271370:CDS 35.0%
!! TTCTAAAAAGGTATCGCCAA+AGG + chr2_3:2739085-2739104 Msa0271370:CDS 35.0%
TAATGCAATGCATCTTCCTT+GGG - chr2_3:2739175-2739194 None:intergenic 35.0%
ATAATGCAATGCATCTTCCT+TGG - chr2_3:2739176-2739195 None:intergenic 35.0%
TGTAATTGTTCATGCCATCT+TGG - chr2_3:2739419-2739438 None:intergenic 35.0%
ATAATCTTATCATGTTCGGG+TGG - chr2_3:2739554-2739573 None:intergenic 35.0%
AAAGCTTGGAATGCAGATAA+AGG - chr2_3:2739629-2739648 None:intergenic 35.0%
AAACTATTCACAAGCCAACT+TGG - chr2_3:2739678-2739697 None:intergenic 35.0%
TTGTTGGTACAAGGATAACA+TGG - chr2_3:2739937-2739956 None:intergenic 35.0%
! ATCTGAAGTCTTTGGTCAAC+TGG + chr2_3:2736468-2736487 Msa0271370:intron 40.0%
! TCTGAAGTCTTTGGTCAACT+GGG + chr2_3:2736469-2736488 Msa0271370:intron 40.0%
!! GTGATCTAGCTTAGGAGTTT+TGG + chr2_3:2736702-2736721 Msa0271370:five_prime_UTR 40.0%
TGTTTATGGAACACCTTACG+AGG - chr2_3:2736924-2736943 None:intergenic 40.0%
CATGGCTAGGATTCATAAAC+TGG + chr2_3:2737080-2737099 Msa0271370:intron 40.0%
! GTGACGTTCGTGATAGTTTT+GGG + chr2_3:2737343-2737362 Msa0271370:CDS 40.0%
GAGACTTTCCTCTATGATGA+TGG - chr2_3:2737407-2737426 None:intergenic 40.0%
CATCATAGAGGAAAGTCTCA+TGG + chr2_3:2737408-2737427 Msa0271370:CDS 40.0%
! AAAGTCTCATGGTTCTGTAC+AGG + chr2_3:2737419-2737438 Msa0271370:CDS 40.0%
TAGAGGAGAGTGAGAATACT+TGG + chr2_3:2737526-2737545 Msa0271370:CDS 40.0%
TCTGCAACTAACCTGTTTCA+GGG - chr2_3:2737664-2737683 None:intergenic 40.0%
ATCTGCAACTAACCTGTTTC+AGG - chr2_3:2737665-2737684 None:intergenic 40.0%
!! TTCGTTTCACTTTTCAGCCA+GGG + chr2_3:2737771-2737790 Msa0271370:intron 40.0%
!! TAAGCGAAGAGTGTTTACCA+GGG - chr2_3:2737874-2737893 None:intergenic 40.0%
! GTGATTGATTCTAGGAGTCT+TGG + chr2_3:2738185-2738204 Msa0271370:intron 40.0%
!! CGTTTTGATAGTCGGAAACT+CGG - chr2_3:2738632-2738651 None:intergenic 40.0%
CTATGTTGTAACTCCCAGAT+GGG - chr2_3:2739112-2739131 None:intergenic 40.0%
ACCAAATTCAGCACTTGATG+CGG + chr2_3:2739205-2739224 Msa0271370:CDS 40.0%
ACTTCGAAAATGAGATGCTC+CGG - chr2_3:2739286-2739305 None:intergenic 40.0%
TCCTGTAATGAGGATGATGA+CGG + chr2_3:2739359-2739378 Msa0271370:CDS 40.0%
!! GGCTTGTTTTTCAGAACCAA+AGG - chr2_3:2739395-2739414 None:intergenic 40.0%
TGAAAAACAAGCCTCCAAGA+TGG + chr2_3:2739402-2739421 Msa0271370:CDS 40.0%
AATTGTTCATGCCATCTTGG+AGG - chr2_3:2739416-2739435 None:intergenic 40.0%
!!! AGTGCTGGTGCCTTAATTTT+CGG + chr2_3:2739438-2739457 Msa0271370:CDS 40.0%
TTACTCGTCCCCGAAAATTA+AGG - chr2_3:2739451-2739470 None:intergenic 40.0%
ATTCTGCAATTCGGCAAAGT+TGG + chr2_3:2739572-2739591 Msa0271370:CDS 40.0%
TTCTGCAATTCGGCAAAGTT+GGG + chr2_3:2739573-2739592 Msa0271370:CDS 40.0%
TGGGAAAGATATGTTCACCA+TGG + chr2_3:2739592-2739611 Msa0271370:CDS 40.0%
CAGCATCTGAGCAATAACAA+TGG - chr2_3:2739819-2739838 None:intergenic 40.0%
CATTAGATTCATGCGTACCA+AGG + chr2_3:2739911-2739930 Msa0271370:three_prime_UTR 40.0%
AGAGAGTGAGAGAGAGATGA+TGG + chr2_3:2736246-2736265 Msa0271370:five_prime_UTR 45.0%
!! AGAGAGATGATGGAGGTGTA+AGG + chr2_3:2736256-2736275 Msa0271370:five_prime_UTR 45.0%
! GGTGCTTTGTGATCTAGCTT+AGG + chr2_3:2736694-2736713 Msa0271370:five_prime_UTR 45.0%
ACGGAAAGACATTCCGTAGT+AGG - chr2_3:2737313-2737332 None:intergenic 45.0%
GAACGTCACGAACTATGCTA+CGG - chr2_3:2737332-2737351 None:intergenic 45.0%
! CGTGACGTTCGTGATAGTTT+TGG + chr2_3:2737342-2737361 Msa0271370:CDS 45.0%
CTTACTGGCCATCATCATAG+AGG + chr2_3:2737396-2737415 Msa0271370:CDS 45.0%
! GTGAGAATACTTGGCCTTCA+AGG + chr2_3:2737535-2737554 Msa0271370:CDS 45.0%
GCAACTACATGCTTCCTTGA+AGG - chr2_3:2737552-2737571 None:intergenic 45.0%
TGCACATATTCCTCCAAGAC+TGG - chr2_3:2737590-2737609 None:intergenic 45.0%
GTCTTGGAGGAATATGTGCA+AGG + chr2_3:2737590-2737609 Msa0271370:CDS 45.0%
!! TTAGTTTGCCGCAGAACTCT+GGG - chr2_3:2737629-2737648 None:intergenic 45.0%
TAACCTGTTTCAGGGACACA+GGG - chr2_3:2737656-2737675 None:intergenic 45.0%
!! GTTCGTTTCACTTTTCAGCC+AGG + chr2_3:2737770-2737789 Msa0271370:intron 45.0%
CATTGAATGATTCCGTCTCG+TGG - chr2_3:2737797-2737816 None:intergenic 45.0%
!! GTAAGCGAAGAGTGTTTACC+AGG - chr2_3:2737875-2737894 None:intergenic 45.0%
CTTACGCCTAGTTACCTAGT+GGG + chr2_3:2737890-2737909 Msa0271370:CDS 45.0%
AATTCCTCCTCTCTGCTAAG+AGG + chr2_3:2738410-2738429 Msa0271370:CDS 45.0%
! CATATATGGGCAGAAGTGCA+GGG - chr2_3:2739032-2739051 None:intergenic 45.0%
! ACATATATGGGCAGAAGTGC+AGG - chr2_3:2739033-2739052 None:intergenic 45.0%
TTCTGCCCATATATGTCCTC+CGG + chr2_3:2739037-2739056 Msa0271370:CDS 45.0%
GCTATGTTGTAACTCCCAGA+TGG - chr2_3:2739113-2739132 None:intergenic 45.0%
TGGGAGTTACAACATAGCTC+AGG + chr2_3:2739115-2739134 Msa0271370:CDS 45.0%
CCAAATTCAGCACTTGATGC+GGG + chr2_3:2739206-2739225 Msa0271370:CDS 45.0%
!!! AGTGCACGGTTTTCTGAGAT+CGG + chr2_3:2739332-2739351 Msa0271370:CDS 45.0%
GGCATGAACAATTACAGTGC+TGG + chr2_3:2739423-2739442 Msa0271370:CDS 45.0%
!! GTGCTGGTGCCTTAATTTTC+GGG + chr2_3:2739439-2739458 Msa0271370:CDS 45.0%
! TGCTGGTGCCTTAATTTTCG+GGG + chr2_3:2739440-2739459 Msa0271370:CDS 45.0%
! AAGCAGCTTTGACACCAAGT+TGG + chr2_3:2739661-2739680 Msa0271370:CDS 45.0%
GTACAAGGATAACATGGCCT+TGG - chr2_3:2739931-2739950 None:intergenic 45.0%
TCTCTCCTCACTCTTGTACC+CGG - chr2_3:2736215-2736234 None:intergenic 50.0%
! GAGTGAGAGAGAGATGATGG+AGG + chr2_3:2736249-2736268 Msa0271370:five_prime_UTR 50.0%
TGATGGCAGCATATGCGTAC+TGG + chr2_3:2737237-2737256 Msa0271370:intron 50.0%
TGATGTCATTCGGCGACTAG+AGG + chr2_3:2737509-2737528 Msa0271370:CDS 50.0%
GTGCTTCTGTTTGCCAGTCT+TGG + chr2_3:2737574-2737593 Msa0271370:CDS 50.0%
CTTCTGTTTGCCAGTCTTGG+AGG + chr2_3:2737577-2737596 Msa0271370:CDS 50.0%
GTTAAGAGCCCAGAGTTCTG+CGG + chr2_3:2737618-2737637 Msa0271370:CDS 50.0%
!! GTTAGTTTGCCGCAGAACTC+TGG - chr2_3:2737630-2737649 None:intergenic 50.0%
ATTCCCTGTGTCCCTGAAAC+AGG + chr2_3:2737650-2737669 Msa0271370:CDS 50.0%
CTAACCTGTTTCAGGGACAC+AGG - chr2_3:2737657-2737676 None:intergenic 50.0%
! CAGGGCTCAGACAAAGGTAT+AGG - chr2_3:2737856-2737875 None:intergenic 50.0%
CTATACCTTTGTCTGAGCCC+TGG + chr2_3:2737854-2737873 Msa0271370:CDS 50.0%
GTTTACCAGGGCTCAGACAA+AGG - chr2_3:2737862-2737881 None:intergenic 50.0%
GCTTACGCCTAGTTACCTAG+TGG + chr2_3:2737889-2737908 Msa0271370:CDS 50.0%
ATCCATTATGTCGGAGGGCA+AGG + chr2_3:2738222-2738241 Msa0271370:intron 50.0%
CTCAGTGTAGGTTGTTCTCC+TGG - chr2_3:2738437-2738456 None:intergenic 50.0%
TCTGCCCATATATGTCCTCC+GGG + chr2_3:2739038-2739057 Msa0271370:CDS 50.0%
AGTCCCCGGAGGACATATAT+GGG - chr2_3:2739045-2739064 None:intergenic 50.0%
ATATATGTCCTCCGGGGACT+GGG + chr2_3:2739045-2739064 Msa0271370:CDS 50.0%
TATCGCCAAAGGTCCCATCT+GGG + chr2_3:2739096-2739115 Msa0271370:CDS 50.0%
TAACTCCCAGATGGGACCTT+TGG - chr2_3:2739104-2739123 None:intergenic 50.0%
CTAAATGTGCTCGGAACTCG+AGG + chr2_3:2739149-2739168 Msa0271370:CDS 50.0%
!! CCCGCATCAAGTGCTGAATT+TGG - chr2_3:2739209-2739228 None:intergenic 50.0%
AATTCAGCACTTGATGCGGG+CGG + chr2_3:2739209-2739228 Msa0271370:CDS 50.0%
!! TGAATTAGCTCTGGCTGTCC+GGG - chr2_3:2739242-2739261 None:intergenic 50.0%
!! GTGAATTAGCTCTGGCTGTC+CGG - chr2_3:2739243-2739262 None:intergenic 50.0%
AGGGAACGGTGAATTAGCTC+TGG - chr2_3:2739251-2739270 None:intergenic 50.0%
AGAGCTAATTCACCGTTCCC+TGG + chr2_3:2739250-2739269 Msa0271370:CDS 50.0%
CAATCGAGTTCAGCAGTGCA+CGG + chr2_3:2739318-2739337 Msa0271370:CDS 50.0%
!!! GTGCACGGTTTTCTGAGATC+GGG + chr2_3:2739333-2739352 Msa0271370:CDS 50.0%
!!! TGCACGGTTTTCTGAGATCG+GGG + chr2_3:2739334-2739353 Msa0271370:CDS 50.0%
GCCGTCATCATCCTCATTAC+AGG - chr2_3:2739363-2739382 None:intergenic 50.0%
TGACGGCAAGATGAGACCTT+TGG + chr2_3:2739376-2739395 Msa0271370:CDS 50.0%
TTATCATGTTCGGGTGGTGC+TGG - chr2_3:2739548-2739567 None:intergenic 50.0%
TGAGTCCGGGTACAAGAGTG+AGG + chr2_3:2736207-2736226 Msa0271370:five_prime_UTR 55.0%
! GGCAGCATATGCGTACTGGT+TGG + chr2_3:2737241-2737260 Msa0271370:intron 55.0%
AGCCTTGCCCTCCGACATAA+TGG - chr2_3:2738227-2738246 None:intergenic 55.0%
TGTCGGAGGGCAAGGCTTAA+TGG + chr2_3:2738230-2738249 Msa0271370:intron 55.0%
TGGTCCTCTTAGCAGAGAGG+AGG - chr2_3:2738417-2738436 None:intergenic 55.0%
TCCTCTCTGCTAAGAGGACC+AGG + chr2_3:2738416-2738435 Msa0271370:CDS 55.0%
TCCTGGTCCTCTTAGCAGAG+AGG - chr2_3:2738420-2738439 None:intergenic 55.0%
! ATATGGGCAGAAGTGCAGGG+AGG - chr2_3:2739029-2739048 None:intergenic 55.0%
CTGCCCATATATGTCCTCCG+GGG + chr2_3:2739039-2739058 Msa0271370:CDS 55.0%
CAGTCCCCGGAGGACATATA+TGG - chr2_3:2739046-2739065 None:intergenic 55.0%
CATATATGTCCTCCGGGGAC+TGG + chr2_3:2739044-2739063 Msa0271370:CDS 55.0%
GTATCGCCAAAGGTCCCATC+TGG + chr2_3:2739095-2739114 Msa0271370:CDS 55.0%
GCTAATTCACCGTTCCCTGG+AGG + chr2_3:2739253-2739272 Msa0271370:CDS 55.0%
!!! GCACGGTTTTCTGAGATCGG+GGG + chr2_3:2739335-2739354 Msa0271370:CDS 55.0%
GATCGGGGGATCCTGTAATG+AGG + chr2_3:2739349-2739368 Msa0271370:CDS 55.0%
!! GGTGCTGGTTGAGATGGTGT+CGG - chr2_3:2739533-2739552 None:intergenic 55.0%
TTTCAGCCAGGGCCACGAGA+CGG + chr2_3:2737782-2737801 Msa0271370:intron 60.0%
ATGATTCCGTCTCGTGGCCC+TGG - chr2_3:2737791-2737810 None:intergenic 60.0%
!! TAGCTCTGGCTGTCCGGGAA+CGG - chr2_3:2739237-2739256 None:intergenic 60.0%
GGAACGAGTCCTCCAGGGAA+CGG - chr2_3:2739265-2739284 None:intergenic 60.0%
GTTCCCTGGAGGACTCGTTC+CGG + chr2_3:2739264-2739283 Msa0271370:CDS 60.0%
CTTCCACCCAACCACCTGCT+GGG + chr2_3:2739504-2739523 Msa0271370:CDS 60.0%
TTCCACCCAACCACCTGCTG+GGG + chr2_3:2739505-2739524 Msa0271370:CDS 60.0%
!! TCGGGTGGTGCTGGTTGAGA+TGG - chr2_3:2739539-2739558 None:intergenic 60.0%
TGCTCGGAACTCGAGGCCCA+AGG + chr2_3:2739156-2739175 Msa0271370:CDS 65.0%
GCTCCGGAACGAGTCCTCCA+GGG - chr2_3:2739270-2739289 None:intergenic 65.0%
TGCTCCGGAACGAGTCCTCC+AGG - chr2_3:2739271-2739290 None:intergenic 65.0%
GCTTCCACCCAACCACCTGC+TGG + chr2_3:2739503-2739522 Msa0271370:CDS 65.0%
CTCGTCTTCCCAGTCCCCGG+AGG - chr2_3:2739056-2739075 None:intergenic 70.0%
CGGCTCGTCTTCCCAGTCCC+CGG - chr2_3:2739059-2739078 None:intergenic 70.0%
GATGCGGGCGGCTCCGTTCC+CGG + chr2_3:2739221-2739240 Msa0271370:CDS 75.0%
CGCCCCAGCAGGTGGTTGGG+TGG - chr2_3:2739510-2739529 None:intergenic 75.0%
CGGCGCCCCAGCAGGTGGTT+GGG - chr2_3:2739513-2739532 None:intergenic 75.0%
TCGGCGCCCCAGCAGGTGGT+TGG - chr2_3:2739514-2739533 None:intergenic 75.0%
!! GATGGTGTCGGCGCCCCAGC+AGG - chr2_3:2739521-2739540 None:intergenic 75.0%
!!! GGTGTCGGCGCCCCAGCAGG+TGG - chr2_3:2739518-2739537 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 2736191 2740044 2736191 ID=Msa0271370;Name=Msa0271370
chr2_3 mRNA 2736191 2740044 2736191 ID=Msa0271370-mRNA-1;Parent=Msa0271370;Name=Msa0271370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=351|0.8|0.83|1|0.6|0.5|6|350|439
chr2_3 exon 2736191 2736396 2736191 ID=Msa0271370-mRNA-1:exon:1334;Parent=Msa0271370-mRNA-1
chr2_3 exon 2736686 2736755 2736686 ID=Msa0271370-mRNA-1:exon:1335;Parent=Msa0271370-mRNA-1
chr2_3 exon 2737246 2737671 2737246 ID=Msa0271370-mRNA-1:exon:1336;Parent=Msa0271370-mRNA-1
chr2_3 exon 2737788 2737911 2737788 ID=Msa0271370-mRNA-1:exon:1337;Parent=Msa0271370-mRNA-1
chr2_3 exon 2738389 2738521 2738389 ID=Msa0271370-mRNA-1:exon:1338;Parent=Msa0271370-mRNA-1
chr2_3 exon 2738983 2740044 2738983 ID=Msa0271370-mRNA-1:exon:1339;Parent=Msa0271370-mRNA-1
chr2_3 five_prime_UTR 2736191 2736396 2736191 ID=Msa0271370-mRNA-1:five_prime_utr;Parent=Msa0271370-mRNA-1
chr2_3 five_prime_UTR 2736686 2736755 2736686 ID=Msa0271370-mRNA-1:five_prime_utr;Parent=Msa0271370-mRNA-1
chr2_3 five_prime_UTR 2737246 2737320 2737246 ID=Msa0271370-mRNA-1:five_prime_utr;Parent=Msa0271370-mRNA-1
chr2_3 CDS 2737321 2737671 2737321 ID=Msa0271370-mRNA-1:cds;Parent=Msa0271370-mRNA-1
chr2_3 CDS 2737788 2737911 2737788 ID=Msa0271370-mRNA-1:cds;Parent=Msa0271370-mRNA-1
chr2_3 CDS 2738389 2738521 2738389 ID=Msa0271370-mRNA-1:cds;Parent=Msa0271370-mRNA-1
chr2_3 CDS 2738983 2739694 2738983 ID=Msa0271370-mRNA-1:cds;Parent=Msa0271370-mRNA-1
chr2_3 three_prime_UTR 2739695 2740044 2739695 ID=Msa0271370-mRNA-1:three_prime_utr;Parent=Msa0271370-mRNA-1
Gene Sequence

>Msa0271370

ATGTCTTTCCGTAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCATCATCATAGAGGAAAGTCTCATGGTTCTGTACAGGATTTGCATGATCAGCCTCTTGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAATTACTATTTGATGTCATTCGGCGACTAGAGGAGAGTGAGAATACTTGGCCTTCAAGGAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCAGAGTTCTGCGGCAAACTAACATTCCCTGTGTCCCTGAAACAGCCAGGGCCACGAGACGGAATCATTCAATGCTTTATCAAAAGGGATAAATCTAACTTAACATATCACCTATACCTTTGTCTGAGCCCTGGTAAACACTCTTCGCTTACGCCTAGTTACCTAGTGGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACCAGGAGAACAACCTACACTGAGTATGTTATTTCAATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGATCAAACTTTCTTGGAACAAAGTTCATCATATATGATACACAGCCTCCCTGCACTTCTGCCCATATATGTCCTCCGGGGACTGGGAAGACGAGCCGTAGATTTTCTAAAAAGGTATCGCCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGAACTCGAGGCCCAAGGAAGATGCATTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCAGAGCTAATTCACCGTTCCCTGGAGGACTCGTTCCGGAGCATCTCATTTTCGAAGTCTCTAGATCATTCAATCGAGTTCAGCAGTGCACGGTTTTCTGAGATCGGGGGATCCTGTAATGAGGATGATGACGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAATTTTCGGGGACGAGTAACTGTTGCATCTGTTAAAAACTTTCAGCTGATTGCTTCCACCCAACCACCTGCTGGGGCGCCGACACCATCTCAACCAGCACCACCCGAACATGATAAGATTATTCTGCAATTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGATATCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTTTGACACCAAGTTGGCTTGTGAATAG
Protein sequence

>Msa0271370

MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLYLCLSPGKHSSLTPSYLVALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE*