AlfalfaGEDB | Msa0271750

M. sativa cultivar zhongmu-4 / Msa0271750

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271750	XP_003593190.2	95.881	437	18	0	1	437	2	438	0.0	805

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271750	sp\|O48788\|Y2267_ARATH	42.453	318	172	5	100	416	320	627	2.95e-76	253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271750	A0A396J2P3	95.881	437	18	0	1	437	2	438	0.0	805

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271750	MtrunA17_Chr2g0279071	95.881	437	18	0	1	437	2	438	0.0	805
Msa0271750	MtrunA17_Chr8g0393211	42.368	321	179	4	100	420	346	660	1.02e-80	262
Msa0271750	MtrunA17_Chr1g0209521	37.688	398	235	6	44	433	276	668	1.31e-78	256
Msa0271750	MtrunA17_Chr3g0128551	38.592	355	200	6	54	405	276	615	2.26e-76	250
Msa0271750	MtrunA17_Chr4g0062911	43.322	307	166	5	102	406	319	619	2.29e-76	250
Msa0271750	MtrunA17_Chr3g0108301	41.562	320	177	6	110	427	334	645	1.48e-74	245
Msa0271750	MtrunA17_Chr5g0432851	39.167	360	201	8	51	406	284	629	3.46e-74	244
Msa0271750	MtrunA17_Chr5g0423121	37.609	343	198	6	87	428	301	628	6.64e-74	243
Msa0271750	MtrunA17_Chr8g0388991	44.674	291	156	3	118	407	330	616	2.28e-73	242
Msa0271750	MtrunA17_Chr7g0265601	36.364	341	199	6	101	426	349	686	5.64e-73	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271750	AT2G26730.1	42.453	318	172	5	100	416	320	627	3.00e-77	253
Msa0271750	AT2G36570.1	39.296	341	188	6	94	416	319	658	1.67e-73	243
Msa0271750	AT4G31250.1	36.709	395	217	6	44	406	249	642	4.42e-73	243
Msa0271750	AT1G68400.1	36.298	416	237	10	36	433	264	669	2.61e-72	240
Msa0271750	AT5G58300.3	41.562	320	177	7	89	405	318	630	3.06e-71	237
Msa0271750	AT5G58300.1	41.562	320	177	7	89	405	318	630	3.06e-71	237
Msa0271750	AT5G58300.2	41.562	320	177	7	89	405	318	630	3.06e-71	237
Msa0271750	AT3G17840.1	36.927	371	214	9	51	406	275	640	2.63e-70	234
Msa0271750	AT1G48480.1	35.925	373	214	9	51	405	278	643	7.83e-68	228
Msa0271750	AT5G05160.1	36.389	360	207	10	52	407	278	619	2.37e-65	221

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Find 88 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCTTTACAACAATGGT+AGG	0.620331	2_3:+3280526	None:intergenic
AAGACTTCAAATTTCCATGA+GGG	0.585520	2_3:+3279832	None:intergenic
AAGAGGATAGAGATAGGAGA+AGG	0.471995	2_3:-3280700	Msa0271750:CDS
AAGCTCAACAGAATAGTCAA+AGG	0.628071	2_3:-3280775	Msa0271750:CDS
AATCTTGAGTTCCAATTGAA+TGG	0.366265	2_3:+3279924	None:intergenic
AATTATGGGGAATAGTTATA+AGG	0.391590	2_3:-3280566	Msa0271750:CDS
ACACTTGATGTCAGAAGATG+AGG	0.571768	2_3:-3279376	Msa0271750:CDS
ACCAATAGCAGCTCAACATA+TGG	0.481028	2_3:-3279739	Msa0271750:CDS
ACCATATGTTGAGCTGCTAT+TGG	0.420502	2_3:+3279738	None:intergenic
ACTTCTTAGAGCTTCTGCTG+AGG	0.655336	2_3:-3280602	Msa0271750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTAACCTCTTTACAACAA+TGG	+	chr2_3:3279756-3279775	None:intergenic	30.0%
AGACTTAAAACCATTCACTA+AGG	-	chr2_3:3279775-3279794	Msa0271750:CDS	30.0%
TAGTATAAGCTAAAAGCTCA+TGG	+	chr2_3:3280103-3280122	None:intergenic	30.0%
TGATAAAGTCATGCACAATT+TGG	+	chr2_3:3280307-3280326	None:intergenic	30.0%
AATCTTGAGTTCCAATTGAA+TGG	+	chr2_3:3280354-3280373	None:intergenic	30.0%
AAGACTTCAAATTTCCATGA+GGG	+	chr2_3:3280446-3280465	None:intergenic	30.0%
GTTTACAAATCACCTGAATA+TGG	-	chr2_3:3280561-3280580	Msa0271750:CDS	30.0%
TTTCTTGCATAACCATATTC+AGG	+	chr2_3:3280576-3280595	None:intergenic	30.0%
TTACAATGCAATCAGATGTT+TGG	-	chr2_3:3280598-3280617	Msa0271750:CDS	30.0%
TAGCAATGAGATGTATTGAA+AGG	-	chr2_3:3280814-3280833	Msa0271750:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	3279293	3281004	3279293	ID=Msa0271750;Name=Msa0271750
chr2_3	mRNA	3279293	3281004	3279293	ID=Msa0271750-mRNA-1;Parent=Msa0271750;Name=Msa0271750-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|2\|0\|441
chr2_3	exon	3280356	3281004	3280356	ID=Msa0271750-mRNA-1:exon:1618;Parent=Msa0271750-mRNA-1
chr2_3	exon	3279293	3279969	3279293	ID=Msa0271750-mRNA-1:exon:1617;Parent=Msa0271750-mRNA-1
chr2_3	CDS	3280356	3281004	3280356	ID=Msa0271750-mRNA-1:cds;Parent=Msa0271750-mRNA-1
chr2_3	CDS	3279293	3279969	3279293	ID=Msa0271750-mRNA-1:cds;Parent=Msa0271750-mRNA-1

Gene Sequence

>Msa0271750

ATGAGGTTTCCCCTTTTTGTTCTTCAACTTGTTGCTTTTTCAGTTCTTGCAATGGCTCAAGAAGGACCTAAAGGGGATAGTGAAGTCCAAAATAAATCTTCGGACGATAAAAACAACAACAATTCCAATCTTTTATTATTAATACTCAACGTGGTTCTTCTTCTTGCAATTATATTGCTATTGATTCTTTACTATAACACATCAAAAAAGCTCAACAGAATAGTCAAAGGACACATTAACACATTTCATGAACAAGAGAAAGATGTTGAAACAAGTATTGAGAAGAGGATAGAGATAGGAGAAGGGACAACGATGATGGCGGTAGAAGAGAGAAAGGAGTTAATGTTCTTTAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGTCATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACCTACCATTGTTGTAAAGAGGTTAAGAGACTTAAAACCATTCACTAAGGAGGAATTTGCAAAGATAGTGAAAATGATTGCTGATCTTAAACACCCTAATTTGTTGCCTTTGCTTGCTTACTATCATTCCAGAGATGAGAAGCTAATGCTCTATAGATATGCACAGAATGGAAACCTTTTCTCACGACTTCATGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGCGTGGCTCGAGCCCTAGAATACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATTTGAAGTCTTCAAATGTACTATTTGATGAAAATGATTCAGTTTTTGTATCTGACTTTAGCCTTGCCGCGTTAATAGCACAACCAATAGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGTTATGGATCACTTTTAATAGAACTTGTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACTGCTGAAATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGTATTGAAAGGTTCCCAGAGAAACGTCCTGAGATGAAAGAGGTTGTTAGAGAAGTGGAGAAAATACAACAGGTACACTTGATGTCAGAAGATGAGGATGATGTGTCTTGTGATGTGTCTCTAACTGATGATTCCTGTTCAACTAGTAACTCAGGGATGTTTATTGGAGATGAAAGATAG

Protein sequence

>Msa0271750

MRFPLFVLQLVAFSVLAMAQEGPKGDSEVQNKSSDDKNNNNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHINTFHEQEKDVETSIEKRIEIGEGTTMMAVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGPTIVVKRLRDLKPFTKEEFAKIVKMIADLKHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLSVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENDSVFVSDFSLAALIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELVTGKVSMCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDVSLTDDSCSTSNSGMFIGDER*