Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272880 | XP_003593656.1 | 94.498 | 309 | 15 | 2 | 1 | 308 | 1 | 308 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272880 | sp|O49459|NAC73_ARATH | 63.636 | 231 | 73 | 3 | 1 | 222 | 1 | 229 | 8.68e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0272880 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272880 | MtrunA17_Chr2g0282871 | 94.498 | 309 | 15 | 2 | 1 | 308 | 1 | 308 | 0.0 | 609 |
| Msa0272880 | MtrunA17_Chr4g0046431 | 61.963 | 326 | 87 | 9 | 1 | 302 | 1 | 313 | 6.06e-137 | 390 |
| Msa0272880 | MtrunA17_Chr8g0367761 | 69.027 | 226 | 49 | 2 | 1 | 208 | 1 | 223 | 3.92e-114 | 330 |
| Msa0272880 | MtrunA17_Chr4g0040541 | 59.155 | 284 | 101 | 7 | 1 | 279 | 1 | 274 | 5.57e-109 | 318 |
| Msa0272880 | MtrunA17_Chr2g0324961 | 58.219 | 292 | 109 | 6 | 1 | 290 | 1 | 281 | 1.75e-106 | 311 |
| Msa0272880 | MtrunA17_Chr8g0389661 | 61.135 | 229 | 75 | 5 | 8 | 226 | 3 | 227 | 2.12e-88 | 272 |
| Msa0272880 | MtrunA17_Chr5g0422431 | 58.763 | 194 | 77 | 2 | 27 | 220 | 34 | 224 | 2.05e-73 | 232 |
| Msa0272880 | MtrunA17_Chr1g0198751 | 51.055 | 237 | 110 | 4 | 2 | 235 | 7 | 240 | 1.26e-72 | 231 |
| Msa0272880 | MtrunA17_Chr7g0227071 | 56.216 | 185 | 74 | 3 | 31 | 212 | 35 | 215 | 9.93e-67 | 216 |
| Msa0272880 | MtrunA17_Chr1g0198741 | 52.756 | 127 | 59 | 1 | 108 | 233 | 7 | 133 | 5.90e-35 | 128 |
| Msa0272880 | MtrunA17_Chr6g0484441 | 32.317 | 164 | 92 | 6 | 53 | 213 | 5 | 152 | 5.11e-15 | 74.3 |
| Msa0272880 | MtrunA17_Chr7g0217721 | 30.457 | 197 | 120 | 4 | 36 | 231 | 2 | 182 | 9.30e-15 | 73.9 |
| Msa0272880 | MtrunA17_Chr7g0217711 | 32.075 | 159 | 91 | 4 | 36 | 193 | 2 | 144 | 9.70e-15 | 71.2 |
| Msa0272880 | MtrunA17_Chr4g0060931 | 34.507 | 142 | 76 | 5 | 53 | 193 | 17 | 142 | 1.87e-13 | 70.1 |
| Msa0272880 | MtrunA17_Chr7g0253011 | 31.111 | 180 | 93 | 9 | 46 | 212 | 10 | 171 | 2.82e-13 | 69.7 |
| Msa0272880 | MtrunA17_Chr3g0091921 | 34.507 | 142 | 76 | 5 | 53 | 193 | 16 | 141 | 3.79e-13 | 68.9 |
| Msa0272880 | MtrunA17_Chr6g0461661 | 34.104 | 173 | 77 | 11 | 53 | 210 | 18 | 168 | 4.72e-13 | 68.9 |
| Msa0272880 | MtrunA17_Chr3g0139331 | 31.429 | 175 | 97 | 7 | 41 | 210 | 1 | 157 | 6.42e-13 | 68.6 |
| Msa0272880 | MtrunA17_Chr7g0214071 | 33.333 | 147 | 70 | 8 | 53 | 193 | 15 | 139 | 2.25e-12 | 65.9 |
| Msa0272880 | MtrunA17_Chr8g0345701 | 33.974 | 156 | 74 | 8 | 52 | 192 | 6 | 147 | 1.27e-11 | 62.4 |
| Msa0272880 | MtrunA17_Chr8g0385991 | 32.000 | 150 | 79 | 8 | 48 | 193 | 9 | 139 | 1.74e-11 | 62.8 |
| Msa0272880 | MtrunA17_Chr1g0183741 | 27.962 | 211 | 119 | 9 | 52 | 251 | 9 | 197 | 2.20e-11 | 63.2 |
| Msa0272880 | MtrunA17_Chr2g0316971 | 32.738 | 168 | 86 | 9 | 53 | 210 | 23 | 173 | 2.24e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272880 | AT4G28500.1 | 63.636 | 231 | 73 | 3 | 1 | 222 | 1 | 229 | 8.82e-107 | 313 |
| Msa0272880 | AT1G28470.1 | 57.895 | 285 | 80 | 7 | 1 | 249 | 1 | 281 | 3.08e-106 | 312 |
| Msa0272880 | AT4G29230.3 | 61.883 | 223 | 70 | 3 | 6 | 217 | 2 | 220 | 2.60e-91 | 278 |
| Msa0272880 | AT4G29230.1 | 61.883 | 223 | 70 | 3 | 6 | 217 | 2 | 220 | 1.20e-90 | 279 |
| Msa0272880 | AT4G29230.2 | 60.987 | 223 | 71 | 3 | 6 | 217 | 2 | 219 | 1.60e-89 | 276 |
| Msa0272880 | AT5G56620.1 | 58.636 | 220 | 76 | 5 | 9 | 217 | 3 | 218 | 1.09e-81 | 252 |
| Msa0272880 | AT5G56620.2 | 62.944 | 197 | 59 | 4 | 32 | 217 | 25 | 218 | 1.17e-81 | 253 |
| Msa0272880 | AT5G56620.3 | 62.944 | 197 | 59 | 4 | 32 | 217 | 25 | 218 | 1.22e-81 | 253 |
| Msa0272880 | AT1G25580.1 | 56.545 | 191 | 74 | 4 | 27 | 217 | 34 | 215 | 4.22e-69 | 222 |
| Msa0272880 | AT5G14490.2 | 50.500 | 200 | 94 | 4 | 30 | 228 | 34 | 229 | 1.95e-56 | 184 |
| Msa0272880 | AT5G14490.1 | 50.500 | 200 | 94 | 4 | 30 | 228 | 37 | 232 | 6.37e-56 | 185 |
| Msa0272880 | AT5G14490.4 | 50.500 | 200 | 94 | 4 | 30 | 228 | 34 | 229 | 6.85e-56 | 184 |
| Msa0272880 | AT5G14490.3 | 50.500 | 200 | 94 | 4 | 30 | 228 | 37 | 232 | 8.64e-56 | 185 |
| Msa0272880 | AT3G01600.1 | 49.462 | 186 | 90 | 3 | 30 | 214 | 34 | 216 | 1.81e-50 | 171 |
| Msa0272880 | AT3G04060.1 | 33.152 | 184 | 97 | 7 | 41 | 215 | 8 | 174 | 3.03e-19 | 87.0 |
| Msa0272880 | AT5G18270.2 | 33.514 | 185 | 94 | 10 | 41 | 215 | 10 | 175 | 3.09e-16 | 78.6 |
| Msa0272880 | AT5G18270.1 | 33.514 | 185 | 94 | 10 | 41 | 215 | 10 | 175 | 5.14e-16 | 77.8 |
| Msa0272880 | AT3G18400.1 | 34.507 | 142 | 76 | 5 | 53 | 193 | 5 | 130 | 5.30e-15 | 74.7 |
| Msa0272880 | AT1G33060.2 | 30.108 | 186 | 95 | 9 | 40 | 212 | 11 | 174 | 1.41e-13 | 71.6 |
| Msa0272880 | AT1G33060.1 | 30.108 | 186 | 95 | 9 | 40 | 212 | 11 | 174 | 1.54e-13 | 71.6 |
| Msa0272880 | AT4G35580.1 | 31.016 | 187 | 94 | 10 | 46 | 219 | 2 | 166 | 6.75e-13 | 69.3 |
| Msa0272880 | AT4G35580.2 | 31.016 | 187 | 94 | 10 | 46 | 219 | 2 | 166 | 8.72e-13 | 68.9 |
| Msa0272880 | AT4G35580.3 | 31.016 | 187 | 94 | 10 | 46 | 219 | 2 | 166 | 9.04e-13 | 68.9 |
| Msa0272880 | AT2G24430.2 | 29.586 | 169 | 97 | 6 | 52 | 214 | 15 | 167 | 2.81e-12 | 66.6 |
| Msa0272880 | AT2G24430.1 | 29.586 | 169 | 97 | 6 | 52 | 214 | 15 | 167 | 2.81e-12 | 66.6 |
| Msa0272880 | AT1G76420.1 | 31.492 | 181 | 98 | 10 | 52 | 224 | 21 | 183 | 1.87e-11 | 64.3 |
| Msa0272880 | AT3G29035.1 | 32.867 | 143 | 77 | 5 | 53 | 193 | 24 | 149 | 2.12e-11 | 64.3 |
| Msa0272880 | AT1G01720.1 | 30.464 | 151 | 83 | 6 | 47 | 194 | 1 | 132 | 2.59e-11 | 63.5 |
| Msa0272880 | AT2G33480.2 | 29.412 | 187 | 98 | 10 | 41 | 221 | 7 | 165 | 4.85e-11 | 62.8 |
| Msa0272880 | AT2G33480.1 | 29.101 | 189 | 98 | 10 | 41 | 221 | 7 | 167 | 6.87e-11 | 62.0 |
Find 77 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTAACATTTACATTTA+TGG | 0.058753 | 2_3:+4446607 | Msa0272880:three_prime_UTR |
| ATTCGAGATAATTGGAATTT+AGG | 0.164146 | 2_3:+4446661 | Msa0272880:three_prime_UTR |
| TGAATCTCTTACATTGTTAA+TGG | 0.179782 | 2_3:-4446300 | None:intergenic |
| GTTGGCTTATTCGAGATAAT+TGG | 0.209715 | 2_3:+4446653 | Msa0272880:three_prime_UTR |
| TCACTAACATTTACATTTAT+GGG | 0.236425 | 2_3:+4446608 | Msa0272880:three_prime_UTR |
| GAAAACCAGAGAAGACTAAT+TGG | 0.273159 | 2_3:+4446174 | Msa0272880:CDS |
| AGCAAATAGCAAACACAGTT+TGG | 0.285031 | 2_3:+4443676 | None:intergenic |
| GAAACAAGATGGCACAAAAC+TGG | 0.293534 | 2_3:+4446068 | Msa0272880:CDS |
| TCTAGTACTTCTACATCATT+TGG | 0.314489 | 2_3:-4444302 | None:intergenic |
| GGAATTTAGGATATACTATA+TGG | 0.320593 | 2_3:+4446674 | Msa0272880:three_prime_UTR |
| TGACTCTGATTGAAGTTTAG+AGG | 0.323824 | 2_3:+4446721 | Msa0272880:three_prime_UTR |
| CCAACGCTTCAAGGAGATAA+TGG | 0.355602 | 2_3:+4444389 | Msa0272880:CDS |
| GAAGGGATTTAAGAAGATAT+TGG | 0.357820 | 2_3:+4446124 | Msa0272880:CDS |
| GTAACATTGGAAGAGCTTCT+TGG | 0.363219 | 2_3:+4446562 | Msa0272880:exon |
| CTTAATCTCTCCTACAATAC+TGG | 0.389172 | 2_3:-4443867 | None:intergenic |
| TTATTAGGGACCAGTATTGT+AGG | 0.389395 | 2_3:+4443857 | Msa0272880:intron |
| TGTAGAAGTACTAGAGCATT+TGG | 0.390413 | 2_3:+4444310 | Msa0272880:CDS |
| ATCACCCAATTAGTCTTCTC+TGG | 0.399788 | 2_3:-4446179 | None:intergenic |
| TCACTTTGAACAGCCATGTT+TGG | 0.400365 | 2_3:-4446479 | None:intergenic |
| AACTATTATTCGCTTATCAA+TGG | 0.414728 | 2_3:+4446505 | Msa0272880:CDS |
| GGGTGGAGTTAATGAATTGC+CGG | 0.417191 | 2_3:+4444253 | Msa0272880:intron |
| CATTTATGGGATTGTAATGA+AGG | 0.418319 | 2_3:+4446621 | Msa0272880:three_prime_UTR |
| CATGTTGTCTAGGCTGTGTC+TGG | 0.424066 | 2_3:-4446271 | None:intergenic |
| CACATTAAGAGCTACATTGT+TGG | 0.427511 | 2_3:-4446375 | None:intergenic |
| TGTTCCTGTTGTGTATGCTT+TGG | 0.432715 | 2_3:-4446006 | None:intergenic |
| GTAGGAGAGATTAAGAACTA+TGG | 0.446677 | 2_3:+4443875 | Msa0272880:exon |
| ATATGCATGTTGGTCATAGC+AGG | 0.451891 | 2_3:+4446432 | Msa0272880:CDS |
| GCAAATAGCAAACACAGTTT+GGG | 0.457388 | 2_3:+4443677 | None:intergenic |
| CTAGTACTTCTACATCATTT+GGG | 0.458512 | 2_3:-4444301 | None:intergenic |
| GAGTTCATACCAACGCTTCA+AGG | 0.459148 | 2_3:+4444380 | Msa0272880:CDS |
| CCATTATCTCCTTGAAGCGT+TGG | 0.461132 | 2_3:-4444389 | None:intergenic |
| GGGTCAAATTTCACTCCAGC+TGG | 0.465906 | 2_3:-4444281 | None:intergenic |
| CTTCTTCATTCATACCAAGA+TGG | 0.471328 | 2_3:-4446211 | None:intergenic |
| CCTGTTGTGTATGCTTTGGA+AGG | 0.474842 | 2_3:-4446002 | None:intergenic |
| GCCGCATGAGGGGCATTCAA+TGG | 0.476343 | 2_3:-4443979 | None:intergenic |
| TACACCAACTATTGCAAAGA+AGG | 0.482059 | 2_3:+4446152 | Msa0272880:CDS |
| TGCTATGACCAACATGCATA+TGG | 0.484398 | 2_3:-4446430 | None:intergenic |
| CCTTCCAAAGCATACACAAC+AGG | 0.484981 | 2_3:+4446002 | Msa0272880:CDS |
| TGCAAACAAAGTAAGAGTAC+TGG | 0.494119 | 2_3:+4446532 | Msa0272880:CDS |
| TAATGAAGGAAGGAATAAGT+TGG | 0.496812 | 2_3:+4446635 | Msa0272880:three_prime_UTR |
| GAATTGCCGGGGTTACCAGC+TGG | 0.498475 | 2_3:+4444266 | Msa0272880:CDS |
| GGTGGAGTTAATGAATTGCC+GGG | 0.501114 | 2_3:+4444254 | Msa0272880:CDS |
| TTCAATATTATGGCCGCATG+AGG | 0.506854 | 2_3:-4443991 | None:intergenic |
| ACACACCCAGCACAATTACC+AGG | 0.508146 | 2_3:+4444422 | Msa0272880:CDS |
| AAAACCAGAGAAGACTAATT+GGG | 0.508959 | 2_3:+4446175 | Msa0272880:CDS |
| TACTGGAGAGAAAGTAACAT+TGG | 0.511432 | 2_3:+4446549 | Msa0272880:exon |
| TATGGGATTGTAATGAAGGA+AGG | 0.513560 | 2_3:+4446625 | Msa0272880:three_prime_UTR |
| AAAATAATCAACAAAGGAAG+TGG | 0.515719 | 2_3:+4446329 | Msa0272880:CDS |
| TCAATATTATGGCCGCATGA+GGG | 0.518397 | 2_3:-4443990 | None:intergenic |
| GTTGCAGGAGTTAGCAAAGA+TGG | 0.520564 | 2_3:+4445954 | Msa0272880:intron |
| ATGGAATTACCATGTTGTCT+AGG | 0.524147 | 2_3:-4446281 | None:intergenic |
| AACATGGCTGTTCAAAGTGA+TGG | 0.524451 | 2_3:+4446482 | Msa0272880:CDS |
| ATTAAGAGCTACATTGTTGG+AGG | 0.531511 | 2_3:-4446372 | None:intergenic |
| GTGATGCATCAATACCATCT+TGG | 0.536511 | 2_3:+4446197 | Msa0272880:CDS |
| AAGAAGGAATTGAAACAAGA+TGG | 0.540463 | 2_3:+4446057 | Msa0272880:CDS |
| ATCAACAAAGGAAGTGGCCA+TGG | 0.542226 | 2_3:+4446335 | Msa0272880:CDS |
| ATGTTTGGTATAATTAGTTG+TGG | 0.542896 | 2_3:-4446464 | None:intergenic |
| ATTTAGGATATACTATATGG+TGG | 0.546615 | 2_3:+4446677 | Msa0272880:three_prime_UTR |
| ATGAATGAAGAAGAAAGAGA+TGG | 0.549873 | 2_3:+4446221 | Msa0272880:CDS |
| AAACAAGATGGCACAAAACT+GGG | 0.551473 | 2_3:+4446069 | Msa0272880:CDS |
| TTCACTCCAGCTGGTAACCC+CGG | 0.559582 | 2_3:-4444272 | None:intergenic |
| AAGGTTCACACTGATGAAGA+AGG | 0.564034 | 2_3:+4446041 | Msa0272880:CDS |
| CAATATTATGGCCGCATGAG+GGG | 0.567135 | 2_3:-4443989 | None:intergenic |
| AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 2_3:+4446022 | Msa0272880:CDS |
| CAACAATGTAGCTCTTAATG+TGG | 0.583204 | 2_3:+4446376 | Msa0272880:CDS |
| GGTATGAACTCATCAATAAG+TGG | 0.587548 | 2_3:-4444368 | None:intergenic |
| CAGACACAGCCTAGACAACA+TGG | 0.593480 | 2_3:+4446272 | Msa0272880:CDS |
| AATTATGACCATATGCATGT+TGG | 0.599378 | 2_3:+4446422 | Msa0272880:CDS |
| ACCATTGAATGCCCCTCATG+CGG | 0.616642 | 2_3:+4443978 | Msa0272880:CDS |
| AGAAGTACTAGAGCATTTGG+AGG | 0.620573 | 2_3:+4444313 | Msa0272880:CDS |
| ACAACTAATTATACCAAACA+TGG | 0.621621 | 2_3:+4446466 | Msa0272880:CDS |
| AAGCATACACAACAGGAACA+AGG | 0.635238 | 2_3:+4446009 | Msa0272880:CDS |
| AGGCTGCACTGTTATTACCA+TGG | 0.642479 | 2_3:-4446352 | None:intergenic |
| AGAGATTAAGAACTATGGCA+TGG | 0.652933 | 2_3:+4443880 | Msa0272880:exon |
| TATGCATGTTGGTCATAGCA+GGG | 0.654809 | 2_3:+4446433 | Msa0272880:CDS |
| AAGGAAAAGTGTGAGCACAC+AGG | 0.674376 | 2_3:+4443753 | Msa0272880:five_prime_UTR |
| GTGGAGTTAATGAATTGCCG+GGG | 0.680068 | 2_3:+4444255 | Msa0272880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTAAATATAAAAACC+TGG | - | chr2_3:4444443-4444462 | None:intergenic | 10.0% |
| !!! | TGAAATAGATTTTAATTATA+AGG | + | chr2_3:4444668-4444687 | Msa0272880:intron | 10.0% |
| !!! | CATATTTTGCTTTATTATTA+GGG | + | chr2_3:4443843-4443862 | Msa0272880:intron | 15.0% |
| !!! | GATTTTTTACTTCAATATTA+TGG | - | chr2_3:4444004-4444023 | None:intergenic | 15.0% |
| !! | TAATATTGAAGTAAAAAATC+AGG | + | chr2_3:4444004-4444023 | Msa0272880:CDS | 15.0% |
| !! | TAAACTAAAGGAATTAATAT+CGG | - | chr2_3:4444196-4444215 | None:intergenic | 15.0% |
| !! | ATTAAAATGATTTAGAGATT+TGG | + | chr2_3:4444482-4444501 | Msa0272880:intron | 15.0% |
| !!! | AATAGATTTTAATTATAAGG+CGG | + | chr2_3:4444671-4444690 | Msa0272880:intron | 15.0% |
| !! | AAAGAAAATTATTTGTCAAT+TGG | + | chr2_3:4444772-4444791 | Msa0272880:intron | 15.0% |
| !! | AAGAAAATTATTTGTCAATT+GGG | + | chr2_3:4444773-4444792 | Msa0272880:intron | 15.0% |
| !! | TTAATATTACATTGAGAAAA+AGG | + | chr2_3:4445865-4445884 | Msa0272880:intron | 15.0% |
| !! | TATGAAAAAATAATCAACAA+AGG | + | chr2_3:4446323-4446342 | Msa0272880:CDS | 15.0% |
| !! | ATAAAGCAAAATATGGAAAA+AGG | - | chr2_3:4443838-4443857 | None:intergenic | 20.0% |
| !! | CCTAATAATAAAGCAAAATA+TGG | - | chr2_3:4443845-4443864 | None:intergenic | 20.0% |
| !!! | CCATATTTTGCTTTATTATT+AGG | + | chr2_3:4443842-4443861 | Msa0272880:intron | 20.0% |
| !! | CACACAAATTAATAAACTAA+AGG | - | chr2_3:4444208-4444227 | None:intergenic | 20.0% |
| !!! | TTTGATGATTTTTGATACAT+AGG | + | chr2_3:4444232-4444251 | Msa0272880:intron | 20.0% |
| !!! | TTGATGATTTTTGATACATA+GGG | + | chr2_3:4444233-4444252 | Msa0272880:intron | 20.0% |
| !!! | ATTAATTAATTTGATGCATG+CGG | - | chr2_3:4444570-4444589 | None:intergenic | 20.0% |
| !! | AGAAAATTATTTGTCAATTG+GGG | + | chr2_3:4444774-4444793 | Msa0272880:intron | 20.0% |
| !!! | TTTTCATAAGTTAGTAGAAA+GGG | - | chr2_3:4444815-4444834 | None:intergenic | 20.0% |
| !!! | ATTTTCATAAGTTAGTAGAA+AGG | - | chr2_3:4444816-4444835 | None:intergenic | 20.0% |
| !!! | TGATTATTTTTTGTGAATTG+TGG | + | chr2_3:4444880-4444899 | Msa0272880:intron | 20.0% |
| !!! | TAATTTGTTACTGTAACATT+AGG | + | chr2_3:4445168-4445187 | Msa0272880:intron | 20.0% |
| !!! | AAAAATTGTTCCTTAAGTTT+TGG | + | chr2_3:4445219-4445238 | Msa0272880:intron | 20.0% |
| !! | AACACAAAAAAAAAGGTAAT+TGG | - | chr2_3:4445249-4445268 | None:intergenic | 20.0% |
| !!! | AATTACCTTTTTTTTTGTGT+TGG | + | chr2_3:4445248-4445267 | Msa0272880:intron | 20.0% |
| !!! | ATTACCTTTTTTTTTGTGTT+GGG | + | chr2_3:4445249-4445268 | Msa0272880:intron | 20.0% |
| !! | GTGATACATTATTAATCAAA+AGG | - | chr2_3:4445320-4445339 | None:intergenic | 20.0% |
| !! | AAGTGAATAAGAATTTGTAA+AGG | - | chr2_3:4445665-4445684 | None:intergenic | 20.0% |
| !!! | GAAATATATTGACTTGAAAA+CGG | + | chr2_3:4445796-4445815 | Msa0272880:intron | 20.0% |
| !! | TTCACTAACATTTACATTTA+TGG | + | chr2_3:4446607-4446626 | Msa0272880:three_prime_UTR | 20.0% |
| !! | TCACTAACATTTACATTTAT+GGG | + | chr2_3:4446608-4446627 | Msa0272880:three_prime_UTR | 20.0% |
| ! | TTTGATCTTAAATCTTGCTA+AGG | + | chr2_3:4444063-4444082 | Msa0272880:intron | 25.0% |
| ! | CATTGCATGTGTTAATTATT+GGG | + | chr2_3:4444519-4444538 | Msa0272880:intron | 25.0% |
| !!! | TCAAATTGCTATTGATGTTT+TGG | - | chr2_3:4445135-4445154 | None:intergenic | 25.0% |
| ! | GTTACAGTAACAAATTACTT+AGG | - | chr2_3:4445165-4445184 | None:intergenic | 25.0% |
| !!! | AATTGGTTTTCCAAAACTTA+AGG | - | chr2_3:4445232-4445251 | None:intergenic | 25.0% |
| ! | GTACCAAAAGAAATAGAATT+GGG | - | chr2_3:4445342-4445361 | None:intergenic | 25.0% |
| ! | TGTACCAAAAGAAATAGAAT+TGG | - | chr2_3:4445343-4445362 | None:intergenic | 25.0% |
| ! | TGTTGAAGATAAAAACTTAG+AGG | - | chr2_3:4445485-4445504 | None:intergenic | 25.0% |
| !! | AAGTTTTTATCTTCAACACT+TGG | + | chr2_3:4445487-4445506 | Msa0272880:intron | 25.0% |
| ! | TGAATTACTAATAAGAGAGA+AGG | - | chr2_3:4445549-4445568 | None:intergenic | 25.0% |
| ! | AATTTGTAAAGGAACTCATA+TGG | - | chr2_3:4445654-4445673 | None:intergenic | 25.0% |
| !!! | GACACTTATTTTAAAAGAGA+CGG | + | chr2_3:4445894-4445913 | Msa0272880:intron | 25.0% |
| !!! | ACTAGAGCAATTTTTTCTAA+TGG | + | chr2_3:4446095-4446114 | Msa0272880:CDS | 25.0% |
| ! | TGAATCTCTTACATTGTTAA+TGG | - | chr2_3:4446303-4446322 | None:intergenic | 25.0% |
| ! | AAAATAATCAACAAAGGAAG+TGG | + | chr2_3:4446329-4446348 | Msa0272880:CDS | 25.0% |
| ! | ATGTTTGGTATAATTAGTTG+TGG | - | chr2_3:4446467-4446486 | None:intergenic | 25.0% |
| ! | ACAACTAATTATACCAAACA+TGG | + | chr2_3:4446466-4446485 | Msa0272880:CDS | 25.0% |
| ! | AACTATTATTCGCTTATCAA+TGG | + | chr2_3:4446505-4446524 | Msa0272880:CDS | 25.0% |
| ! | ATTCGAGATAATTGGAATTT+AGG | + | chr2_3:4446661-4446680 | Msa0272880:three_prime_UTR | 25.0% |
| !! | GGAATTTAGGATATACTATA+TGG | + | chr2_3:4446674-4446693 | Msa0272880:three_prime_UTR | 25.0% |
| !! | ATTTAGGATATACTATATGG+TGG | + | chr2_3:4446677-4446696 | Msa0272880:three_prime_UTR | 25.0% |
| ! | TACAGTAGTTTGTATCTTTC+GGG | - | chr2_3:4443809-4443828 | None:intergenic | 30.0% |
| ! | CTACAGTAGTTTGTATCTTT+CGG | - | chr2_3:4443810-4443829 | None:intergenic | 30.0% |
| AAAAATCAGGTACTAATCAG+TGG | + | chr2_3:4444017-4444036 | Msa0272880:intron | 30.0% | |
| ! | ATGATTTTTGATACATAGGG+TGG | + | chr2_3:4444236-4444255 | Msa0272880:intron | 30.0% |
| CTAGTACTTCTACATCATTT+GGG | - | chr2_3:4444304-4444323 | None:intergenic | 30.0% | |
| TCTAGTACTTCTACATCATT+TGG | - | chr2_3:4444305-4444324 | None:intergenic | 30.0% | |
| GCATTGCATGTGTTAATTAT+TGG | + | chr2_3:4444518-4444537 | Msa0272880:intron | 30.0% | |
| TGTGAATTGTGGAAAAAACA+TGG | + | chr2_3:4444891-4444910 | Msa0272880:intron | 30.0% | |
| AAACCAATGAATGCTTGAAT+TGG | + | chr2_3:4445000-4445019 | Msa0272880:intron | 30.0% | |
| ACATCCCAACACAAAAAAAA+AGG | - | chr2_3:4445256-4445275 | None:intergenic | 30.0% | |
| !! | TCACCCAATTCTATTTCTTT+TGG | + | chr2_3:4445336-4445355 | Msa0272880:intron | 30.0% |
| TGGTGGAAATAGAGTAATTA+AGG | - | chr2_3:4445586-4445605 | None:intergenic | 30.0% | |
| ATTGTTACCTAAAATGTTGC+AGG | + | chr2_3:4445939-4445958 | Msa0272880:intron | 30.0% | |
| AAGAAGGAATTGAAACAAGA+TGG | + | chr2_3:4446057-4446076 | Msa0272880:CDS | 30.0% | |
| !!! | TTTTTCTAATGGTGTTGTGA+AGG | + | chr2_3:4446106-4446125 | Msa0272880:CDS | 30.0% |
| !!! | TTTTCTAATGGTGTTGTGAA+GGG | + | chr2_3:4446107-4446126 | Msa0272880:CDS | 30.0% |
| GAAGGGATTTAAGAAGATAT+TGG | + | chr2_3:4446124-4446143 | Msa0272880:CDS | 30.0% | |
| ! | TTTTCCTTCTTTGCAATAGT+TGG | - | chr2_3:4446159-4446178 | None:intergenic | 30.0% |
| AAAACCAGAGAAGACTAATT+GGG | + | chr2_3:4446175-4446194 | Msa0272880:CDS | 30.0% | |
| ATGAATGAAGAAGAAAGAGA+TGG | + | chr2_3:4446221-4446240 | Msa0272880:CDS | 30.0% | |
| AATTATGACCATATGCATGT+TGG | + | chr2_3:4446422-4446441 | Msa0272880:CDS | 30.0% | |
| CATTTATGGGATTGTAATGA+AGG | + | chr2_3:4446621-4446640 | Msa0272880:three_prime_UTR | 30.0% | |
| TAATGAAGGAAGGAATAAGT+TGG | + | chr2_3:4446635-4446654 | Msa0272880:three_prime_UTR | 30.0% | |
| TTATTAGGGACCAGTATTGT+AGG | + | chr2_3:4443857-4443876 | Msa0272880:intron | 35.0% | |
| CTTAATCTCTCCTACAATAC+TGG | - | chr2_3:4443870-4443889 | None:intergenic | 35.0% | |
| GTAGGAGAGATTAAGAACTA+TGG | + | chr2_3:4443875-4443894 | Msa0272880:exon | 35.0% | |
| AGAGATTAAGAACTATGGCA+TGG | + | chr2_3:4443880-4443899 | Msa0272880:exon | 35.0% | |
| ! | CTCAAGCTCTGGTAATTAAA+AGG | + | chr2_3:4444091-4444110 | Msa0272880:intron | 35.0% |
| !! | TGTAGAAGTACTAGAGCATT+TGG | + | chr2_3:4444310-4444329 | Msa0272880:CDS | 35.0% |
| GGTATGAACTCATCAATAAG+TGG | - | chr2_3:4444371-4444390 | None:intergenic | 35.0% | |
| AAAAACCTGGTAATTGTGCT+GGG | - | chr2_3:4444430-4444449 | None:intergenic | 35.0% | |
| TAAAAACCTGGTAATTGTGC+TGG | - | chr2_3:4444431-4444450 | None:intergenic | 35.0% | |
| AACACATGCAATGCATCAAA+CGG | - | chr2_3:4444512-4444531 | None:intergenic | 35.0% | |
| ! | TAGAGAGCATAAATGTTCTG+TGG | - | chr2_3:4444708-4444727 | None:intergenic | 35.0% |
| TTTCTTTGCTTGCAATTGCA+AGG | - | chr2_3:4444759-4444778 | None:intergenic | 35.0% | |
| !! | AAAATTACACACTCTAGGAC+TGG | - | chr2_3:4444935-4444954 | None:intergenic | 35.0% |
| ! | TCCTAGAGTGTGTAATTTTC+AGG | + | chr2_3:4444936-4444955 | Msa0272880:intron | 35.0% |
| TTGCCAATTCAAGCATTCAT+TGG | - | chr2_3:4445006-4445025 | None:intergenic | 35.0% | |
| ATGACCACCAAACTCTAAAT+AGG | + | chr2_3:4445030-4445049 | Msa0272880:intron | 35.0% | |
| TGACCACCAAACTCTAAATA+GGG | + | chr2_3:4445031-4445050 | Msa0272880:intron | 35.0% | |
| ! | TGTGTGTGTATTGGTGAATT+GGG | + | chr2_3:4445431-4445450 | Msa0272880:intron | 35.0% |
| TTGTCGTAGACAAAAATGTG+CGG | + | chr2_3:4445772-4445791 | Msa0272880:intron | 35.0% | |
| TGGAAGGTCTATGAAAAAAG+TGG | - | chr2_3:4445989-4446008 | None:intergenic | 35.0% | |
| AGGAACAAGGAAAAGAAGAA+AGG | + | chr2_3:4446022-4446041 | Msa0272880:CDS | 35.0% | |
| AAACAAGATGGCACAAAACT+GGG | + | chr2_3:4446069-4446088 | Msa0272880:CDS | 35.0% | |
| TACACCAACTATTGCAAAGA+AGG | + | chr2_3:4446152-4446171 | Msa0272880:CDS | 35.0% | |
| GAAAACCAGAGAAGACTAAT+TGG | + | chr2_3:4446174-4446193 | Msa0272880:CDS | 35.0% | |
| CTTCTTCATTCATACCAAGA+TGG | - | chr2_3:4446214-4446233 | None:intergenic | 35.0% | |
| ATGGAATTACCATGTTGTCT+AGG | - | chr2_3:4446284-4446303 | None:intergenic | 35.0% | |
| ATTAAGAGCTACATTGTTGG+AGG | - | chr2_3:4446375-4446394 | None:intergenic | 35.0% | |
| CACATTAAGAGCTACATTGT+TGG | - | chr2_3:4446378-4446397 | None:intergenic | 35.0% | |
| CAACAATGTAGCTCTTAATG+TGG | + | chr2_3:4446376-4446395 | Msa0272880:CDS | 35.0% | |
| ! | TGCAAACAAAGTAAGAGTAC+TGG | + | chr2_3:4446532-4446551 | Msa0272880:CDS | 35.0% |
| TACTGGAGAGAAAGTAACAT+TGG | + | chr2_3:4446549-4446568 | Msa0272880:exon | 35.0% | |
| TATGGGATTGTAATGAAGGA+AGG | + | chr2_3:4446625-4446644 | Msa0272880:three_prime_UTR | 35.0% | |
| ! | GTTGGCTTATTCGAGATAAT+TGG | + | chr2_3:4446653-4446672 | Msa0272880:three_prime_UTR | 35.0% |
| TGACTCTGATTGAAGTTTAG+AGG | + | chr2_3:4446721-4446740 | Msa0272880:three_prime_UTR | 35.0% | |
| TCAATATTATGGCCGCATGA+GGG | - | chr2_3:4443993-4444012 | None:intergenic | 40.0% | |
| TTCAATATTATGGCCGCATG+AGG | - | chr2_3:4443994-4444013 | None:intergenic | 40.0% | |
| TAATTACCAGAGCTTGAGAC+TGG | - | chr2_3:4444089-4444108 | None:intergenic | 40.0% | |
| !! | AGAAGTACTAGAGCATTTGG+AGG | + | chr2_3:4444313-4444332 | Msa0272880:CDS | 40.0% |
| GCAATTGCAAGGACTAAGTA+AGG | - | chr2_3:4444748-4444767 | None:intergenic | 40.0% | |
| GCCTGAAAATTACACACTCT+AGG | - | chr2_3:4444940-4444959 | None:intergenic | 40.0% | |
| TGTAACACACTTCAACGAGT+TGG | - | chr2_3:4444978-4444997 | None:intergenic | 40.0% | |
| GACCACCAAACTCTAAATAG+GGG | + | chr2_3:4445032-4445051 | Msa0272880:intron | 40.0% | |
| !!! | ATAGGGGCATCCTATTTTGA+TGG | + | chr2_3:4445048-4445067 | Msa0272880:intron | 40.0% |
| !!! | TAGGGGCATCCTATTTTGAT+GGG | + | chr2_3:4445049-4445068 | Msa0272880:intron | 40.0% |
| GAAAAAGCCCCCATCAAAAT+AGG | - | chr2_3:4445061-4445080 | None:intergenic | 40.0% | |
| TGTTGGGATGTTTACACTCT+TGG | + | chr2_3:4445265-4445284 | Msa0272880:intron | 40.0% | |
| ! | GTGTGTGTGTATTGGTGAAT+TGG | + | chr2_3:4445430-4445449 | Msa0272880:intron | 40.0% |
| TAACACTACGATGAACATGG+TGG | - | chr2_3:4445603-4445622 | None:intergenic | 40.0% | |
| GCATAACACTACGATGAACA+TGG | - | chr2_3:4445606-4445625 | None:intergenic | 40.0% | |
| GTTCATCGTAGTGTTATGCA+TGG | + | chr2_3:4445607-4445626 | Msa0272880:intron | 40.0% | |
| ! | GCTAACTCCTGCAACATTTT+AGG | - | chr2_3:4445949-4445968 | None:intergenic | 40.0% |
| TGTTCCTGTTGTGTATGCTT+TGG | - | chr2_3:4446009-4446028 | None:intergenic | 40.0% | |
| AAGCATACACAACAGGAACA+AGG | + | chr2_3:4446009-4446028 | Msa0272880:CDS | 40.0% | |
| AAGGTTCACACTGATGAAGA+AGG | + | chr2_3:4446041-4446060 | Msa0272880:CDS | 40.0% | |
| GAAACAAGATGGCACAAAAC+TGG | + | chr2_3:4446068-4446087 | Msa0272880:CDS | 40.0% | |
| !! | ATCACCCAATTAGTCTTCTC+TGG | - | chr2_3:4446182-4446201 | None:intergenic | 40.0% |
| GTGATGCATCAATACCATCT+TGG | + | chr2_3:4446197-4446216 | Msa0272880:CDS | 40.0% | |
| TGCTATGACCAACATGCATA+TGG | - | chr2_3:4446433-4446452 | None:intergenic | 40.0% | |
| ATATGCATGTTGGTCATAGC+AGG | + | chr2_3:4446432-4446451 | Msa0272880:CDS | 40.0% | |
| TATGCATGTTGGTCATAGCA+GGG | + | chr2_3:4446433-4446452 | Msa0272880:CDS | 40.0% | |
| TCACTTTGAACAGCCATGTT+TGG | - | chr2_3:4446482-4446501 | None:intergenic | 40.0% | |
| AACATGGCTGTTCAAAGTGA+TGG | + | chr2_3:4446482-4446501 | Msa0272880:CDS | 40.0% | |
| GTAACATTGGAAGAGCTTCT+TGG | + | chr2_3:4446562-4446581 | Msa0272880:exon | 40.0% | |
| TAGCACACACAGACAGAAGA+AGG | + | chr2_3:4443734-4443753 | Msa0272880:intron | 45.0% | |
| ! | AAGGAAAAGTGTGAGCACAC+AGG | + | chr2_3:4443753-4443772 | Msa0272880:five_prime_UTR | 45.0% |
| CAATATTATGGCCGCATGAG+GGG | - | chr2_3:4443992-4444011 | None:intergenic | 45.0% | |
| TTGTCGAATCTCTACGACTC+TGG | + | chr2_3:4444132-4444151 | Msa0272880:intron | 45.0% | |
| GGGTGGAGTTAATGAATTGC+CGG | + | chr2_3:4444253-4444272 | Msa0272880:intron | 45.0% | |
| GGTGGAGTTAATGAATTGCC+GGG | + | chr2_3:4444254-4444273 | Msa0272880:CDS | 45.0% | |
| GTGGAGTTAATGAATTGCCG+GGG | + | chr2_3:4444255-4444274 | Msa0272880:CDS | 45.0% | |
| GAGTTCATACCAACGCTTCA+AGG | + | chr2_3:4444380-4444399 | Msa0272880:CDS | 45.0% | |
| CCATTATCTCCTTGAAGCGT+TGG | - | chr2_3:4444392-4444411 | None:intergenic | 45.0% | |
| CCAACGCTTCAAGGAGATAA+TGG | + | chr2_3:4444389-4444408 | Msa0272880:CDS | 45.0% | |
| AGACACGATCTTGTTCTGCA+CGG | + | chr2_3:4444542-4444561 | Msa0272880:intron | 45.0% | |
| ! | TGCCCCTATTTAGAGTTTGG+TGG | - | chr2_3:4445037-4445056 | None:intergenic | 45.0% |
| ! | GGATGCCCCTATTTAGAGTT+TGG | - | chr2_3:4445040-4445059 | None:intergenic | 45.0% |
| !!! | AGGGGCATCCTATTTTGATG+GGG | + | chr2_3:4445050-4445069 | Msa0272880:intron | 45.0% |
| GTGTGTGTGTGTGTGTGTAT+TGG | + | chr2_3:4445422-4445441 | Msa0272880:intron | 45.0% | |
| GTTGCAGGAGTTAGCAAAGA+TGG | + | chr2_3:4445954-4445973 | Msa0272880:intron | 45.0% | |
| ! | CCTGTTGTGTATGCTTTGGA+AGG | - | chr2_3:4446005-4446024 | None:intergenic | 45.0% |
| CCTTCCAAAGCATACACAAC+AGG | + | chr2_3:4446002-4446021 | Msa0272880:CDS | 45.0% | |
| ATCAACAAAGGAAGTGGCCA+TGG | + | chr2_3:4446335-4446354 | Msa0272880:CDS | 45.0% | |
| AGGCTGCACTGTTATTACCA+TGG | - | chr2_3:4446355-4446374 | None:intergenic | 45.0% | |
| !!! | TGTTTTATAATTTTTTTTTT+TGG | + | chr2_3:4444597-4444616 | Msa0272880:intron | 5.0% |
| ACCATTGAATGCCCCTCATG+CGG | + | chr2_3:4443978-4443997 | Msa0272880:CDS | 50.0% | |
| GGGTCAAATTTCACTCCAGC+TGG | - | chr2_3:4444284-4444303 | None:intergenic | 50.0% | |
| ACACACCCAGCACAATTACC+AGG | + | chr2_3:4444422-4444441 | Msa0272880:CDS | 50.0% | |
| !!! | GGGGCATCCTATTTTGATGG+GGG | + | chr2_3:4445051-4445070 | Msa0272880:intron | 50.0% |
| CATGTTGTCTAGGCTGTGTC+TGG | - | chr2_3:4446274-4446293 | None:intergenic | 50.0% | |
| CAGACACAGCCTAGACAACA+TGG | + | chr2_3:4446272-4446291 | Msa0272880:CDS | 50.0% | |
| CTAAGGCCAGTCTCAAGCTC+TGG | + | chr2_3:4444080-4444099 | Msa0272880:intron | 55.0% | |
| TTCACTCCAGCTGGTAACCC+CGG | - | chr2_3:4444275-4444294 | None:intergenic | 55.0% | |
| !! | GCCGCATGAGGGGCATTCAA+TGG | - | chr2_3:4443982-4444001 | None:intergenic | 60.0% |
| GAATTGCCGGGGTTACCAGC+TGG | + | chr2_3:4444266-4444285 | Msa0272880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4443689 | 4446745 | 4443689 | ID=Msa0272880;Name=Msa0272880 |
| chr2_3 | mRNA | 4443689 | 4446745 | 4443689 | ID=Msa0272880-mRNA-1;Parent=Msa0272880;Name=Msa0272880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=96|1|1|1|0.5|0.4|5|180|308 |
| chr2_3 | exon | 4443689 | 4443732 | 4443689 | ID=Msa0272880-mRNA-1:exon:2209;Parent=Msa0272880-mRNA-1 |
| chr2_3 | exon | 4443753 | 4443774 | 4443753 | ID=Msa0272880-mRNA-1:exon:2210;Parent=Msa0272880-mRNA-1 |
| chr2_3 | exon | 4443864 | 4444025 | 4443864 | ID=Msa0272880-mRNA-1:exon:2211;Parent=Msa0272880-mRNA-1 |
| chr2_3 | exon | 4444254 | 4444443 | 4444254 | ID=Msa0272880-mRNA-1:exon:2212;Parent=Msa0272880-mRNA-1 |
| chr2_3 | exon | 4445961 | 4446745 | 4445961 | ID=Msa0272880-mRNA-1:exon:2213;Parent=Msa0272880-mRNA-1 |
| chr2_3 | five_prime_UTR | 4443689 | 4443732 | 4443689 | ID=Msa0272880-mRNA-1:five_prime_utr;Parent=Msa0272880-mRNA-1 |
| chr2_3 | five_prime_UTR | 4443753 | 4443774 | 4443753 | ID=Msa0272880-mRNA-1:five_prime_utr;Parent=Msa0272880-mRNA-1 |
| chr2_3 | five_prime_UTR | 4443864 | 4443893 | 4443864 | ID=Msa0272880-mRNA-1:five_prime_utr;Parent=Msa0272880-mRNA-1 |
| chr2_3 | CDS | 4443894 | 4444025 | 4443894 | ID=Msa0272880-mRNA-1:cds;Parent=Msa0272880-mRNA-1 |
| chr2_3 | CDS | 4444254 | 4444443 | 4444254 | ID=Msa0272880-mRNA-1:cds;Parent=Msa0272880-mRNA-1 |
| chr2_3 | CDS | 4445961 | 4446565 | 4445961 | ID=Msa0272880-mRNA-1:cds;Parent=Msa0272880-mRNA-1 |
| chr2_3 | three_prime_UTR | 4446566 | 4446745 | 4446566 | ID=Msa0272880-mRNA-1:three_prime_utr;Parent=Msa0272880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
