Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274560 | XP_013462567.1 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 6.75e-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274560 | sp|Q9FJK3|AGL80_ARATH | 43.871 | 155 | 86 | 1 | 1 | 155 | 1 | 154 | 2.14e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274560 | G7ZXK2 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 3.22e-164 | 462 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0274560 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274560 | MtrunA17_Chr2g0283941 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 6.21e-168 | 462 |
| Msa0274560 | MtrunA17_Chr3g0107381 | 46.369 | 179 | 93 | 2 | 1 | 177 | 1 | 178 | 4.24e-48 | 158 |
| Msa0274560 | MtrunA17_Chr3g0106421 | 42.365 | 203 | 108 | 3 | 29 | 227 | 1 | 198 | 1.40e-47 | 156 |
| Msa0274560 | MtrunA17_Chr3g0107461 | 44.231 | 156 | 87 | 0 | 5 | 160 | 5 | 160 | 3.04e-42 | 141 |
| Msa0274560 | MtrunA17_Chr8g0351751 | 45.000 | 160 | 86 | 1 | 1 | 158 | 1 | 160 | 1.75e-39 | 137 |
| Msa0274560 | MtrunA17_Chr5g0432691 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 1.93e-38 | 131 |
| Msa0274560 | MtrunA17_Chr3g0105791 | 44.681 | 141 | 78 | 0 | 29 | 169 | 1 | 141 | 1.36e-37 | 129 |
| Msa0274560 | MtrunA17_Chr4g0014321 | 37.500 | 200 | 111 | 2 | 1 | 200 | 1 | 186 | 3.70e-37 | 130 |
| Msa0274560 | MtrunA17_Chr4g0031421 | 44.604 | 139 | 77 | 0 | 29 | 167 | 1 | 139 | 4.24e-37 | 127 |
| Msa0274560 | MtrunA17_Chr3g0110131 | 45.860 | 157 | 84 | 1 | 1 | 157 | 1 | 156 | 4.34e-36 | 128 |
| Msa0274560 | MtrunA17_Chr4g0014031 | 42.308 | 156 | 90 | 0 | 1 | 156 | 1 | 156 | 2.63e-34 | 123 |
| Msa0274560 | MtrunA17_Chr4g0013041 | 37.662 | 154 | 94 | 1 | 1 | 154 | 1 | 152 | 1.09e-31 | 115 |
| Msa0274560 | MtrunA17_Chr3g0106501 | 43.704 | 135 | 76 | 0 | 29 | 163 | 1 | 135 | 2.50e-30 | 110 |
| Msa0274560 | MtrunA17_Chr1g0188681 | 37.736 | 159 | 97 | 2 | 1 | 159 | 1 | 157 | 1.81e-29 | 108 |
| Msa0274560 | MtrunA17_Chr2g0296861 | 41.772 | 158 | 87 | 2 | 1 | 156 | 1 | 155 | 2.30e-29 | 108 |
| Msa0274560 | MtrunA17_Chr4g0014131 | 40.741 | 162 | 96 | 0 | 1 | 162 | 1 | 162 | 3.75e-29 | 109 |
| Msa0274560 | MtrunA17_Chr3g0107331 | 39.456 | 147 | 88 | 1 | 4 | 150 | 3 | 148 | 4.22e-29 | 107 |
| Msa0274560 | MtrunA17_Chr1g0197261 | 39.623 | 159 | 92 | 3 | 1 | 158 | 1 | 156 | 6.77e-29 | 106 |
| Msa0274560 | MtrunA17_Chr5g0420351 | 35.669 | 157 | 99 | 2 | 1 | 157 | 1 | 155 | 4.99e-28 | 104 |
| Msa0274560 | MtrunA17_Chr4g0014121 | 40.385 | 156 | 93 | 0 | 1 | 156 | 29 | 184 | 5.79e-28 | 105 |
| Msa0274560 | MtrunA17_Chr3g0107351 | 37.671 | 146 | 90 | 1 | 5 | 150 | 4 | 148 | 1.47e-26 | 100 |
| Msa0274560 | MtrunA17_Chr3g0107361 | 36.364 | 154 | 97 | 1 | 5 | 158 | 4 | 156 | 5.67e-26 | 99.4 |
| Msa0274560 | MtrunA17_Chr2g0296831 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 8.84e-26 | 97.8 |
| Msa0274560 | MtrunA17_Chr1g0197461 | 36.129 | 155 | 97 | 2 | 4 | 158 | 3 | 155 | 1.71e-25 | 97.8 |
| Msa0274560 | MtrunA17_Chr1g0197321 | 34.810 | 158 | 102 | 1 | 1 | 158 | 1 | 157 | 2.19e-25 | 97.8 |
| Msa0274560 | MtrunA17_Chr1g0188661 | 39.375 | 160 | 93 | 3 | 1 | 159 | 1 | 157 | 6.81e-25 | 96.7 |
| Msa0274560 | MtrunA17_Chr7g0218151 | 38.994 | 159 | 95 | 2 | 1 | 159 | 1 | 157 | 5.16e-24 | 94.4 |
| Msa0274560 | MtrunA17_Chr3g0107341 | 33.766 | 154 | 101 | 1 | 5 | 158 | 4 | 156 | 5.37e-24 | 94.4 |
| Msa0274560 | MtrunA17_Chr4g0012761 | 37.736 | 159 | 97 | 2 | 1 | 159 | 1 | 157 | 9.35e-23 | 90.9 |
| Msa0274560 | MtrunA17_Chr3g0128721 | 31.613 | 155 | 105 | 1 | 4 | 158 | 7 | 160 | 1.54e-21 | 93.2 |
| Msa0274560 | MtrunA17_Chr1g0193311 | 35.669 | 157 | 99 | 2 | 1 | 157 | 1 | 155 | 1.64e-21 | 87.4 |
| Msa0274560 | MtrunA17_Chr1g0188651 | 36.478 | 159 | 97 | 3 | 1 | 159 | 1 | 155 | 2.73e-20 | 84.3 |
| Msa0274560 | MtrunA17_Chr4g0008701 | 31.655 | 139 | 94 | 1 | 4 | 142 | 7 | 144 | 7.02e-19 | 85.1 |
| Msa0274560 | MtrunA17_Chr7g0267601 | 30.216 | 139 | 96 | 1 | 4 | 142 | 7 | 144 | 1.81e-18 | 84.0 |
| Msa0274560 | MtrunA17_Chr4g0022641 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 1.00e-13 | 69.7 |
| Msa0274560 | MtrunA17_Chr1g0212151 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 2.82e-13 | 68.2 |
| Msa0274560 | MtrunA17_Chr6g0457851 | 25.490 | 204 | 132 | 7 | 3 | 197 | 12 | 204 | 3.61e-12 | 65.1 |
| Msa0274560 | MtrunA17_Chr4g0059631 | 21.759 | 216 | 151 | 4 | 3 | 208 | 2 | 209 | 9.10e-12 | 63.2 |
| Msa0274560 | MtrunA17_Chr6g0449851 | 27.044 | 159 | 100 | 5 | 3 | 154 | 2 | 151 | 1.09e-11 | 63.5 |
| Msa0274560 | MtrunA17_Chr1g0212471 | 36.000 | 100 | 57 | 4 | 3 | 96 | 2 | 100 | 2.22e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274560 | AT5G48670.1 | 43.871 | 155 | 86 | 1 | 1 | 155 | 1 | 154 | 2.18e-31 | 118 |
| Msa0274560 | AT3G05860.3 | 36.158 | 177 | 108 | 2 | 1 | 175 | 1 | 174 | 4.14e-30 | 112 |
| Msa0274560 | AT3G05860.2 | 36.158 | 177 | 108 | 2 | 1 | 175 | 1 | 174 | 4.56e-30 | 111 |
| Msa0274560 | AT3G05860.1 | 36.158 | 177 | 108 | 2 | 1 | 175 | 1 | 174 | 6.20e-30 | 112 |
| Msa0274560 | AT1G65300.1 | 35.065 | 154 | 99 | 1 | 4 | 157 | 3 | 155 | 1.38e-28 | 109 |
| Msa0274560 | AT5G27960.1 | 34.839 | 155 | 100 | 1 | 4 | 158 | 2 | 155 | 2.65e-27 | 107 |
| Msa0274560 | AT5G26650.1 | 35.484 | 155 | 99 | 1 | 4 | 158 | 2 | 155 | 3.20e-27 | 107 |
| Msa0274560 | AT1G65330.1 | 35.065 | 154 | 99 | 1 | 5 | 158 | 4 | 156 | 2.49e-25 | 101 |
| Msa0274560 | AT2G28700.1 | 32.895 | 152 | 97 | 2 | 1 | 150 | 1 | 149 | 1.33e-22 | 94.7 |
| Msa0274560 | AT1G31640.1 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 4.36e-22 | 94.7 |
| Msa0274560 | AT1G31630.1 | 31.293 | 147 | 99 | 2 | 5 | 151 | 4 | 148 | 1.15e-21 | 92.4 |
| Msa0274560 | AT1G22590.2 | 31.013 | 158 | 105 | 1 | 1 | 158 | 1 | 154 | 7.40e-21 | 86.3 |
| Msa0274560 | AT5G27810.1 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.24e-19 | 82.0 |
| Msa0274560 | AT2G40210.1 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 9.41e-19 | 84.7 |
| Msa0274560 | AT5G26580.1 | 29.114 | 158 | 97 | 2 | 1 | 158 | 1 | 143 | 1.50e-16 | 78.2 |
| Msa0274560 | AT5G06500.1 | 29.560 | 159 | 104 | 3 | 1 | 156 | 1 | 154 | 4.54e-16 | 75.5 |
| Msa0274560 | AT5G26630.1 | 32.278 | 158 | 106 | 1 | 1 | 158 | 1 | 157 | 6.44e-16 | 74.7 |
| Msa0274560 | AT5G55690.1 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.01e-15 | 73.2 |
| Msa0274560 | AT5G55690.2 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.01e-15 | 73.2 |
| Msa0274560 | AT5G58890.1 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 8.58e-14 | 69.7 |
Find 63 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATACTTTAGTAATAAAT+TGG | 0.162034 | 2_3:-6399007 | None:intergenic |
| CTTCAGATTGTTGTCTAAAA+AGG | 0.184609 | 2_3:-6399087 | None:intergenic |
| AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2_3:+6399187 | Msa0274560:CDS |
| AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2_3:+6399235 | Msa0274560:CDS |
| TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2_3:+6399281 | Msa0274560:CDS |
| TTGATCATCGTTGTCATGAC+TGG | 0.312663 | 2_3:+6398309 | None:intergenic |
| ATACGGACATTAATGGTCTT+TGG | 0.313083 | 2_3:+6399366 | Msa0274560:CDS |
| GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2_3:-6398849 | None:intergenic |
| GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2_3:+6399200 | Msa0274560:CDS |
| TGCCTTCCTGCTCGATGAAT+TGG | 0.351091 | 2_3:-6398358 | None:intergenic |
| TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2_3:+6398737 | Msa0274560:intron |
| GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2_3:+6399170 | Msa0274560:CDS |
| AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2_3:+6399349 | Msa0274560:CDS |
| GAAGCATGCGCAATAATCTT+TGG | 0.415897 | 2_3:+6398789 | Msa0274560:CDS |
| GATGTTAATACGGACATTAA+TGG | 0.419770 | 2_3:+6399359 | Msa0274560:CDS |
| ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2_3:+6398959 | Msa0274560:CDS |
| ACAATCTGAAGGAAATTGAT+TGG | 0.429161 | 2_3:+6399099 | Msa0274560:CDS |
| ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2_3:-6398938 | None:intergenic |
| GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2_3:-6398828 | None:intergenic |
| TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2_3:+6399146 | Msa0274560:CDS |
| ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2_3:+6398817 | Msa0274560:CDS |
| TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2_3:-6398871 | None:intergenic |
| AAATACTTTAGTAATAAATT+GGG | 0.448846 | 2_3:-6399006 | None:intergenic |
| CTCATTCACGTTCACATCCT+CGG | 0.451043 | 2_3:-6399048 | None:intergenic |
| ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2_3:+6399188 | Msa0274560:CDS |
| ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2_3:+6399014 | Msa0274560:CDS |
| TGGTGCTGATGTCCAAGGTT+TGG | 0.501853 | 2_3:+6399262 | Msa0274560:CDS |
| TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2_3:+6399178 | Msa0274560:CDS |
| TCATTCACGTTCACATCCTC+GGG | 0.514972 | 2_3:-6399047 | None:intergenic |
| TGATTGGAGGTTGCAATCGA+TGG | 0.516726 | 2_3:+6399115 | Msa0274560:CDS |
| ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2_3:+6399140 | Msa0274560:CDS |
| CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2_3:+6398825 | Msa0274560:CDS |
| TGATCATCGTTGTCATGACT+GGG | 0.524662 | 2_3:+6398310 | None:intergenic |
| TCATGTTGCTATCCAAACCT+TGG | 0.527597 | 2_3:-6399274 | None:intergenic |
| ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2_3:+6399179 | Msa0274560:CDS |
| AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2_3:+6399164 | Msa0274560:CDS |
| GGAGATATGCAAGCTAATAT+GGG | 0.531775 | 2_3:+6399236 | Msa0274560:CDS |
| CGTTGTCATGACTGGGAGGA+AGG | 0.534161 | 2_3:+6398317 | None:intergenic |
| GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2_3:-6398878 | None:intergenic |
| TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2_3:-6398840 | None:intergenic |
| ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2_3:+6398352 | Msa0274560:CDS |
| ATCTGAAGGAAATTGATTGG+AGG | 0.552242 | 2_3:+6399102 | Msa0274560:CDS |
| TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2_3:+6399205 | Msa0274560:CDS |
| TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2_3:+6399313 | Msa0274560:CDS |
| GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2_3:+6399312 | Msa0274560:CDS |
| ATGCAAGCTAATATGGGCCA+TGG | 0.597067 | 2_3:+6399242 | Msa0274560:CDS |
| GATGGAAATTCAATCTCAAG+AGG | 0.602763 | 2_3:+6399133 | Msa0274560:CDS |
| TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2_3:+6399286 | Msa0274560:CDS |
| ATGAAATCAGCACTCTATGT+GGG | 0.608529 | 2_3:+6398763 | Msa0274560:CDS |
| AATGAAATCAGCACTCTATG+TGG | 0.614486 | 2_3:+6398762 | Msa0274560:CDS |
| GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2_3:+6399215 | Msa0274560:CDS |
| GGCCATGGTGCTGATGTCCA+AGG | 0.619615 | 2_3:+6399257 | Msa0274560:CDS |
| GAATGAGCTGAATGACCTGA+TGG | 0.641130 | 2_3:+6399064 | Msa0274560:CDS |
| AACATCATGAAATGCTAACA+TGG | 0.649787 | 2_3:-6399342 | None:intergenic |
| GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2_3:+6399201 | Msa0274560:CDS |
| GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2_3:+6398962 | Msa0274560:CDS |
| AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2_3:+6398356 | Msa0274560:CDS |
| TACTGGACAATATTGTCCCG+AGG | 0.664224 | 2_3:+6399031 | Msa0274560:CDS |
| GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2_3:-6399329 | None:intergenic |
| AACCTTGGACATCAGCACCA+TGG | 0.676746 | 2_3:-6399259 | None:intergenic |
| TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2_3:+6398812 | Msa0274560:CDS |
| AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2_3:-6399326 | None:intergenic |
| TCATCGTTGTCATGACTGGG+AGG | 0.723014 | 2_3:+6398313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_3:6398643-6398662 | Msa0274560:intron | 10.0% |
| !! | AAATACTTTAGTAATAAATT+GGG | - | chr2_3:6399009-6399028 | None:intergenic | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_3:6399010-6399029 | None:intergenic | 10.0% |
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_3:6398643-6398662 | Msa0274560:intron | 10.0% |
| !! | AAATACTTTAGTAATAAATT+GGG | - | chr2_3:6399009-6399028 | None:intergenic | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_3:6399010-6399029 | None:intergenic | 10.0% |
| !!! | AACTATATATGTTTTTCAAT+AGG | + | chr2_3:6398723-6398742 | Msa0274560:intron | 15.0% |
| !!! | AACTATATATGTTTTTCAAT+AGG | + | chr2_3:6398723-6398742 | Msa0274560:intron | 15.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_3:6398450-6398469 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_3:6398468-6398487 | Msa0274560:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_3:6398473-6398492 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_3:6398485-6398504 | Msa0274560:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_3:6398570-6398589 | Msa0274560:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_3:6398571-6398590 | Msa0274560:intron | 20.0% |
| !! | TGAAAAACATATATAGTTAG+AGG | - | chr2_3:6398721-6398740 | None:intergenic | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_3:6399014-6399033 | Msa0274560:CDS | 20.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_3:6398450-6398469 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_3:6398468-6398487 | Msa0274560:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_3:6398473-6398492 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_3:6398485-6398504 | Msa0274560:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_3:6398570-6398589 | Msa0274560:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_3:6398571-6398590 | Msa0274560:intron | 20.0% |
| !! | TGAAAAACATATATAGTTAG+AGG | - | chr2_3:6398721-6398740 | None:intergenic | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_3:6399014-6399033 | Msa0274560:CDS | 20.0% |
| !! | TACACGCTTTATTGAAAATA+AGG | - | chr2_3:6398423-6398442 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_3:6398959-6398978 | Msa0274560:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_3:6399349-6399368 | Msa0274560:CDS | 25.0% |
| !! | TACACGCTTTATTGAAAATA+AGG | - | chr2_3:6398423-6398442 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_3:6398959-6398978 | Msa0274560:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_3:6399349-6399368 | Msa0274560:CDS | 25.0% |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_3:6398558-6398577 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_3:6398737-6398756 | Msa0274560:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_3:6398893-6398912 | Msa0274560:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_3:6398941-6398960 | None:intergenic | 30.0% | |
| CTTCAGATTGTTGTCTAAAA+AGG | - | chr2_3:6399090-6399109 | None:intergenic | 30.0% | |
| ! | CTTTTTAGACAACAATCTGA+AGG | + | chr2_3:6399088-6399107 | Msa0274560:CDS | 30.0% |
| ACAATCTGAAGGAAATTGAT+TGG | + | chr2_3:6399099-6399118 | Msa0274560:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_3:6399178-6399197 | Msa0274560:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_3:6399179-6399198 | Msa0274560:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_3:6399187-6399206 | Msa0274560:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_3:6399188-6399207 | Msa0274560:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_3:6399281-6399300 | Msa0274560:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_3:6399345-6399364 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATTAA+TGG | + | chr2_3:6399359-6399378 | Msa0274560:CDS | 30.0% | |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_3:6398558-6398577 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_3:6398737-6398756 | Msa0274560:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_3:6398893-6398912 | Msa0274560:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_3:6398941-6398960 | None:intergenic | 30.0% | |
| CTTCAGATTGTTGTCTAAAA+AGG | - | chr2_3:6399090-6399109 | None:intergenic | 30.0% | |
| ! | CTTTTTAGACAACAATCTGA+AGG | + | chr2_3:6399088-6399107 | Msa0274560:CDS | 30.0% |
| ACAATCTGAAGGAAATTGAT+TGG | + | chr2_3:6399099-6399118 | Msa0274560:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_3:6399178-6399197 | Msa0274560:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_3:6399179-6399198 | Msa0274560:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_3:6399187-6399206 | Msa0274560:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_3:6399188-6399207 | Msa0274560:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_3:6399281-6399300 | Msa0274560:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_3:6399345-6399364 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATTAA+TGG | + | chr2_3:6399359-6399378 | Msa0274560:CDS | 30.0% | |
| AGCTACAAAAAAAGGAAAGC+TGG | + | chr2_3:6398381-6398400 | Msa0274560:CDS | 35.0% | |
| AATGAAATCAGCACTCTATG+TGG | + | chr2_3:6398762-6398781 | Msa0274560:CDS | 35.0% | |
| ATGAAATCAGCACTCTATGT+GGG | + | chr2_3:6398763-6398782 | Msa0274560:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_3:6398852-6398871 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_3:6398891-6398910 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_3:6398962-6398981 | Msa0274560:CDS | 35.0% | |
| ATCTGAAGGAAATTGATTGG+AGG | + | chr2_3:6399102-6399121 | Msa0274560:CDS | 35.0% | |
| GATGGAAATTCAATCTCAAG+AGG | + | chr2_3:6399133-6399152 | Msa0274560:CDS | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_3:6399164-6399183 | Msa0274560:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_3:6399170-6399189 | Msa0274560:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_3:6399235-6399254 | Msa0274560:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_3:6399236-6399255 | Msa0274560:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_3:6399286-6399305 | Msa0274560:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_3:6399313-6399332 | Msa0274560:CDS | 35.0% | |
| ATACGGACATTAATGGTCTT+TGG | + | chr2_3:6399366-6399385 | Msa0274560:CDS | 35.0% | |
| AGCTACAAAAAAAGGAAAGC+TGG | + | chr2_3:6398381-6398400 | Msa0274560:CDS | 35.0% | |
| AATGAAATCAGCACTCTATG+TGG | + | chr2_3:6398762-6398781 | Msa0274560:CDS | 35.0% | |
| ATGAAATCAGCACTCTATGT+GGG | + | chr2_3:6398763-6398782 | Msa0274560:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_3:6398852-6398871 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_3:6398891-6398910 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_3:6398962-6398981 | Msa0274560:CDS | 35.0% | |
| ATCTGAAGGAAATTGATTGG+AGG | + | chr2_3:6399102-6399121 | Msa0274560:CDS | 35.0% | |
| GATGGAAATTCAATCTCAAG+AGG | + | chr2_3:6399133-6399152 | Msa0274560:CDS | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_3:6399164-6399183 | Msa0274560:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_3:6399170-6399189 | Msa0274560:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_3:6399235-6399254 | Msa0274560:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_3:6399236-6399255 | Msa0274560:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_3:6399286-6399305 | Msa0274560:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_3:6399313-6399332 | Msa0274560:CDS | 35.0% | |
| ATACGGACATTAATGGTCTT+TGG | + | chr2_3:6399366-6399385 | Msa0274560:CDS | 35.0% | |
| GGAAGGCAAGCTACAAAAAA+AGG | + | chr2_3:6398373-6398392 | Msa0274560:CDS | 40.0% | |
| GAAGCATGCGCAATAATCTT+TGG | + | chr2_3:6398789-6398808 | Msa0274560:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_3:6398812-6398831 | Msa0274560:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_3:6398896-6398915 | Msa0274560:CDS | 40.0% | |
| TGTTGTCTAAAAAGGCCATC+AGG | - | chr2_3:6399082-6399101 | None:intergenic | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_3:6399140-6399159 | Msa0274560:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_3:6399201-6399220 | Msa0274560:CDS | 40.0% | |
| TCATGTTGCTATCCAAACCT+TGG | - | chr2_3:6399277-6399296 | None:intergenic | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_3:6399312-6399331 | Msa0274560:CDS | 40.0% | |
| GGAAGGCAAGCTACAAAAAA+AGG | + | chr2_3:6398373-6398392 | Msa0274560:CDS | 40.0% | |
| GAAGCATGCGCAATAATCTT+TGG | + | chr2_3:6398789-6398808 | Msa0274560:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_3:6398812-6398831 | Msa0274560:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_3:6398896-6398915 | Msa0274560:CDS | 40.0% | |
| TGTTGTCTAAAAAGGCCATC+AGG | - | chr2_3:6399082-6399101 | None:intergenic | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_3:6399140-6399159 | Msa0274560:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_3:6399201-6399220 | Msa0274560:CDS | 40.0% | |
| TCATGTTGCTATCCAAACCT+TGG | - | chr2_3:6399277-6399296 | None:intergenic | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_3:6399312-6399331 | Msa0274560:CDS | 40.0% | |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_3:6398352-6398371 | Msa0274560:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_3:6398817-6398836 | Msa0274560:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_3:6398843-6398862 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_3:6398874-6398893 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_3:6398881-6398900 | None:intergenic | 45.0% | |
| TACTGGACAATATTGTCCCG+AGG | + | chr2_3:6399031-6399050 | Msa0274560:CDS | 45.0% | |
| TCATTCACGTTCACATCCTC+GGG | - | chr2_3:6399050-6399069 | None:intergenic | 45.0% | |
| CTCATTCACGTTCACATCCT+CGG | - | chr2_3:6399051-6399070 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_3:6399064-6399083 | Msa0274560:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+TGG | + | chr2_3:6399115-6399134 | Msa0274560:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_3:6399146-6399165 | Msa0274560:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_3:6399200-6399219 | Msa0274560:CDS | 45.0% | |
| ATGCAAGCTAATATGGGCCA+TGG | + | chr2_3:6399242-6399261 | Msa0274560:CDS | 45.0% | |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_3:6398352-6398371 | Msa0274560:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_3:6398817-6398836 | Msa0274560:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_3:6398843-6398862 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_3:6398874-6398893 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_3:6398881-6398900 | None:intergenic | 45.0% | |
| TACTGGACAATATTGTCCCG+AGG | + | chr2_3:6399031-6399050 | Msa0274560:CDS | 45.0% | |
| TCATTCACGTTCACATCCTC+GGG | - | chr2_3:6399050-6399069 | None:intergenic | 45.0% | |
| CTCATTCACGTTCACATCCT+CGG | - | chr2_3:6399051-6399070 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_3:6399064-6399083 | Msa0274560:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+TGG | + | chr2_3:6399115-6399134 | Msa0274560:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_3:6399146-6399165 | Msa0274560:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_3:6399200-6399219 | Msa0274560:CDS | 45.0% | |
| ATGCAAGCTAATATGGGCCA+TGG | + | chr2_3:6399242-6399261 | Msa0274560:CDS | 45.0% | |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_3:6398356-6398375 | Msa0274560:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_3:6398361-6398380 | None:intergenic | 50.0% | |
| AACCTTGGACATCAGCACCA+TGG | - | chr2_3:6399262-6399281 | None:intergenic | 50.0% | |
| !! | TGGTGCTGATGTCCAAGGTT+TGG | + | chr2_3:6399262-6399281 | Msa0274560:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_3:6399329-6399348 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_3:6399332-6399351 | None:intergenic | 50.0% | |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_3:6398356-6398375 | Msa0274560:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_3:6398361-6398380 | None:intergenic | 50.0% | |
| AACCTTGGACATCAGCACCA+TGG | - | chr2_3:6399262-6399281 | None:intergenic | 50.0% | |
| !! | TGGTGCTGATGTCCAAGGTT+TGG | + | chr2_3:6399262-6399281 | Msa0274560:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_3:6399329-6399348 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_3:6399332-6399351 | None:intergenic | 50.0% | |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_3:6398825-6398844 | Msa0274560:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_3:6399205-6399224 | Msa0274560:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_3:6399215-6399234 | Msa0274560:CDS | 55.0% |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_3:6398825-6398844 | Msa0274560:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_3:6399205-6399224 | Msa0274560:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_3:6399215-6399234 | Msa0274560:CDS | 55.0% |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_3:6398831-6398850 | None:intergenic | 60.0% | |
| !! | GGCCATGGTGCTGATGTCCA+AGG | + | chr2_3:6399257-6399276 | Msa0274560:CDS | 60.0% |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_3:6398831-6398850 | None:intergenic | 60.0% | |
| !! | GGCCATGGTGCTGATGTCCA+AGG | + | chr2_3:6399257-6399276 | Msa0274560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 6398324 | 6399397 | 6398324 | ID=Msa0274560;Name=Msa0274560 |
| chr2_3 | mRNA | 6398324 | 6399397 | 6398324 | ID=Msa0274560-mRNA-1;Parent=Msa0274560;Name=Msa0274560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|243 |
| chr2_3 | exon | 6398324 | 6398402 | 6398324 | ID=Msa0274560-mRNA-1:exon:3008;Parent=Msa0274560-mRNA-1 |
| chr2_3 | exon | 6398745 | 6399397 | 6398745 | ID=Msa0274560-mRNA-1:exon:3009;Parent=Msa0274560-mRNA-1 |
| chr2_3 | CDS | 6398324 | 6398402 | 6398324 | ID=Msa0274560-mRNA-1:cds;Parent=Msa0274560-mRNA-1 |
| chr2_3 | CDS | 6398745 | 6399397 | 6398745 | ID=Msa0274560-mRNA-1:cds;Parent=Msa0274560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
