AlfalfaGEDB | Msa0274590

M. sativa cultivar zhongmu-4 / Msa0274590

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0140096 GO:1901564 GO:1905392
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274590	XP_024632230.1	94.286	665	32	1	1	659	1	665	0.0	1283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274590	sp\|C0LGU7\|MDIS1_ARATH	46.742	706	318	12	1	659	1	695	0.0	595

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274590	A0A072V5H5	89.700	699	32	3	1	659	1	699	0.0	1261

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274590	MtrunA17_Chr2g0283991	94.382	445	25	0	215	659	1	445	0.0	875
Msa0274590	MtrunA17_Chr8g0379101	61.723	708	219	8	3	659	1	707	0.0	820
Msa0274590	MtrunA17_Chr1g0193121	41.294	649	334	10	16	655	16	626	2.08e-160	475
Msa0274590	MtrunA17_Chr3g0113951	41.496	682	322	17	10	659	120	756	1.89e-156	469
Msa0274590	MtrunA17_Chr2g0283981	93.939	198	6	1	1	192	1	198	1.01e-132	388
Msa0274590	MtrunA17_Chr3g0105841	49.856	347	164	6	309	655	193	529	4.33e-117	360
Msa0274590	MtrunA17_Chr8g0386631	33.689	656	383	16	30	655	25	658	2.93e-102	325
Msa0274590	MtrunA17_Chr5g0397651	33.488	648	344	19	31	628	26	636	9.01e-96	308
Msa0274590	MtrunA17_Chr5g0409041	27.508	658	370	24	5	636	4	580	3.84e-47	175
Msa0274590	MtrunA17_Chr4g0058761	25.253	594	335	19	75	631	529	1050	1.67e-40	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274590	AT5G45840.2	47.965	688	309	11	1	659	1	668	0.0	607
Msa0274590	AT5G45840.1	46.304	717	316	13	1	659	1	706	0.0	590
Msa0274590	AT4G18640.1	48.321	685	318	14	3	659	2	678	0.0	589
Msa0274590	AT3G56050.2	49.153	354	173	4	308	656	147	498	1.62e-115	355
Msa0274590	AT3G56050.1	49.153	354	173	4	308	656	147	498	1.62e-115	355
Msa0274590	AT2G40270.2	45.269	391	202	7	268	656	101	481	4.47e-114	351
Msa0274590	AT2G40270.1	45.269	391	202	7	268	656	108	488	4.82e-114	351
Msa0274590	AT5G58540.3	46.089	358	170	7	305	658	2	340	1.02e-101	314
Msa0274590	AT1G63430.3	32.036	668	379	18	31	653	25	662	7.76e-101	322
Msa0274590	AT1G63430.1	32.036	668	379	18	31	653	25	662	7.76e-101	322

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Find 142 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCTTATGGTTAATGC+GGG	0.541085	2_3:-6430385	None:intergenic
AAATATGAGATGCTCCGCAC+TGG	0.574050	2_3:+6431002	Msa0274590:CDS
AACCTTCTACTAAGCTCTGC+AGG	0.429148	2_3:-6428744	None:intergenic
AACGTCTTAATTGGAGTGAA+AGG	0.540878	2_3:+6430695	Msa0274590:CDS
AAGAACTTTGTCAATCTAAT+TGG	0.204375	2_3:+6430399	Msa0274590:CDS
AAGAAGTCGAACGTCTTAAT+TGG	0.281881	2_3:+6430686	Msa0274590:CDS
AAGACTTTCACCACTATGGT+GGG	0.598235	2_3:+6431458	Msa0274590:CDS
AATATAAACATCCTTGTGAA+TGG	0.440096	2_3:-6430441	None:intergenic
AATTAGAGTTATTGGATTTA+AGG	0.190534	2_3:+6428697	Msa0274590:CDS
ACAGGAATGGACTAAGACCA+TGG	0.594130	2_3:+6430231	Msa0274590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGCTTCATTTCTGTTTG+GGG	+	chr2_3:6427802-6427821	Msa0274590:CDS	30.0%
ACTTTACTAAATTGCAGTTG+CGG	+	chr2_3:6428154-6428173	Msa0274590:intron	30.0%
AGTCACTTAAAATCTCTGTA+AGG	+	chr2_3:6428341-6428360	Msa0274590:intron	30.0%
AACATGCAATGAAATTTCCA+AGG	-	chr2_3:6429051-6429070	None:intergenic	30.0%
AATTAATTATCCACACACAC+TGG	-	chr2_3:6429302-6429321	None:intergenic	30.0%
AAAGTTCTTATGGTTAATGC+GGG	-	chr2_3:6430388-6430407	None:intergenic	30.0%
CAAAGTTCTTATGGTTAATG+CGG	-	chr2_3:6430389-6430408	None:intergenic	30.0%
TTAATTGGAGTGAAAGGATA+AGG	+	chr2_3:6430701-6430720	Msa0274590:CDS	30.0%
TTGTTGCTAGAAATCATATC+TGG	+	chr2_3:6431056-6431075	Msa0274590:CDS	30.0%
GAGACATAACTTCTAGATTA+AGG	+	chr2_3:6431400-6431419	Msa0274590:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	6427757	6431515	6427757	ID=Msa0274590;Name=Msa0274590
chr2_3	mRNA	6427757	6431515	6427757	ID=Msa0274590-mRNA-1;Parent=Msa0274590;Name=Msa0274590-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|1\|1\|1\|12\|0\|659
chr2_3	exon	6427757	6427856	6427757	ID=Msa0274590-mRNA-1:exon:3010;Parent=Msa0274590-mRNA-1
chr2_3	exon	6427959	6428091	6427959	ID=Msa0274590-mRNA-1:exon:3011;Parent=Msa0274590-mRNA-1
chr2_3	exon	6428286	6428357	6428286	ID=Msa0274590-mRNA-1:exon:3012;Parent=Msa0274590-mRNA-1
chr2_3	exon	6428638	6428763	6428638	ID=Msa0274590-mRNA-1:exon:3013;Parent=Msa0274590-mRNA-1
chr2_3	exon	6428861	6429004	6428861	ID=Msa0274590-mRNA-1:exon:3014;Parent=Msa0274590-mRNA-1
chr2_3	exon	6429420	6429463	6429420	ID=Msa0274590-mRNA-1:exon:3015;Parent=Msa0274590-mRNA-1
chr2_3	exon	6429543	6429974	6429543	ID=Msa0274590-mRNA-1:exon:3016;Parent=Msa0274590-mRNA-1
chr2_3	exon	6430083	6430273	6430083	ID=Msa0274590-mRNA-1:exon:3017;Parent=Msa0274590-mRNA-1
chr2_3	exon	6430372	6430504	6430372	ID=Msa0274590-mRNA-1:exon:3018;Parent=Msa0274590-mRNA-1
chr2_3	exon	6430683	6430840	6430683	ID=Msa0274590-mRNA-1:exon:3019;Parent=Msa0274590-mRNA-1
chr2_3	exon	6430936	6431121	6430936	ID=Msa0274590-mRNA-1:exon:3020;Parent=Msa0274590-mRNA-1
chr2_3	exon	6431255	6431515	6431255	ID=Msa0274590-mRNA-1:exon:3021;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6427757	6427856	6427757	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6427959	6428091	6427959	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6428286	6428357	6428286	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6428638	6428763	6428638	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6428861	6429004	6428861	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6429420	6429463	6429420	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6429543	6429974	6429543	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6430083	6430273	6430083	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6430372	6430504	6430372	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6430683	6430840	6430683	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6430936	6431121	6430936	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1
chr2_3	CDS	6431255	6431515	6431255	ID=Msa0274590-mRNA-1:cds;Parent=Msa0274590-mRNA-1

Gene Sequence

>Msa0274590

ATGGGAATGAGATGTAACACATTTGGATTTTGGTTTAGAGTTTATATTTGCTTCATTTCTGTTTGGGGAATCCGTGAGTGTTGGTCGCTTAACGATGAAGGATTGGCTTTGTTGGAGTTTCATGCAAGAATAACATGTGATCCTTATGTTGCTTTGGAAAATTGGAATCCAAATGATTGTGACCCTTGCAACTGGTTTGGGGTACACTGCGTCGATGGTAAAGTGCAGATGCTGGACCTAAATGGGCTATCCTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCACTTAAAATCTCTTGTGTTATGCAGTAATAACTTTTCTGGTGACATTCCTAAAGAACTTGGAGATCTAGCCGAATTAGAGTTATTGGATTTAAGGGATACTAACTTGTCAGGAAGCATCCCTGCAGAGCTTAGTAGAAGGTTGCTTTGTTACAACAAAATAGAAGACAATGACTCTCAAGATCAAGGAAATTTCAGACTTCTCTTTAAATCACAACTTGATGATGATTGTTCATCAACTCTGACCACATTATTTGCCTGCATCAATAGAAAGTTTGGTCACTGGTTCAAGCAGGGCCCTGAAGAGAAATGTTTCGAGCTTCAGCCTCGTTCTAATGAGGCAGAGATTGAGATGAACATGCCAAATCTAATCAATTATGCGCGTCGTAAGTTACTCGATCAATCGAATAACCTTCCAGCCGCACCTTATAGTGGTGGACCTAATGCAGGTTTCAGTAACCTTCCAATTAGCATTAGTAGTGGATCTTTTCCAGCTGTTCCAGATGCGAATAAGAAACAAAATCAGTCACATACACCGTTGCCTTCTCCCTCGGATCCTTCACATGATGGAAAGCAAGCAAGTCAAGACCACCCCAAAACTTTTGGAAATTTTTGGAAGTATATAGTTATTATCATAGCTGTGATTGTGTTGGTCAGTGTGATCATAGTTCTTCTTTGCTTTTGGAAAAAACCAGCAGCTAAAATAATTAAACCTTGGAATACAGGAATAAGTGGACAGTTGCAAAAAGCTTTTATAACAGGGGTTCCTAAGTTGAATAGAGCAGAACTAGAGACAGCTTGCGAGGATTTCAGCAATATTGTTACCAATGTTGAAGCATGCACTATATACAAAGGAACACTGTCTAGTGGAGTCGAGATTGCAGTTGTTTCTGGTCTGATTACTTCTAGACAGGAATGGACTAAGACCATGGAATTGAACTACAGGAGAAAGATTGCGTCATTGTCCCGCATTAACCATAAGAACTTTGTCAATCTAATTGGATACTGTGAGGAAGAAGAACCATTCACAAGGATGTTTATATTTGAATATGCACCAAATGGAAGCCTATCTGAGCACCTACATGTTAAAGAAGTCGAACGTCTTAATTGGAGTGAAAGGATAAGGATTATAATGGGAACTGCCTATTGTCTTCAATACATGCACCATGAATTAAATCCACCAGTAGCTCATACCAAAGTTTCTTCAACCATGGTCACGTTGACAGATGATTATGCTGCAAAGCTTGCAGAGGTCACATTTAGAAGTATCGTAGAACCAGCTAAGTCAAGTATTAGAGGCGATTCAAAGAAATATGAGATGCTCCGCACTGGTCTTGACCAAAATGTCTATGATTTTGGAATATTGTTGCTAGAAATCATATCTGGTAAATTGCCTCAATCTGAAGAGCAAGGAAATCTTGTGCACTGGGCTGCTGAATTCTTACATGACAAGAGAAGCATAGGCTACATGATTGATCCAAGTCTGCAATCATTCAAGGACAATGAACTTGATGTAATTTGTGAAGTGATTCAAGGGTGTATCCAACCTGATCCAAAGTTGAGACCTACAATGAGAGACATAACTTCTAGATTAAGGGAAGTGCTTGGTGTGACACCTGAGCAAGCTGTTCCAAGACTTTCACCACTATGGTGGGCAGAACTTGAGATATTATCAGTGGAGGCTACTTAA

Protein sequence

>Msa0274590

MGMRCNTFGFWFRVYICFISVWGIRECWSLNDEGLALLEFHARITCDPYVALENWNPNDCDPCNWFGVHCVDGKVQMLDLNGLSLEGTLAPELGKLSHLKSLVLCSNNFSGDIPKELGDLAELELLDLRDTNLSGSIPAELSRRLLCYNKIEDNDSQDQGNFRLLFKSQLDDDCSSTLTTLFACINRKFGHWFKQGPEEKCFELQPRSNEAEIEMNMPNLINYARRKLLDQSNNLPAAPYSGGPNAGFSNLPISISSGSFPAVPDANKKQNQSHTPLPSPSDPSHDGKQASQDHPKTFGNFWKYIVIIIAVIVLVSVIIVLLCFWKKPAAKIIKPWNTGISGQLQKAFITGVPKLNRAELETACEDFSNIVTNVEACTIYKGTLSSGVEIAVVSGLITSRQEWTKTMELNYRRKIASLSRINHKNFVNLIGYCEEEEPFTRMFIFEYAPNGSLSEHLHVKEVERLNWSERIRIIMGTAYCLQYMHHELNPPVAHTKVSSTMVTLTDDYAAKLAEVTFRSIVEPAKSSIRGDSKKYEMLRTGLDQNVYDFGILLLEIISGKLPQSEEQGNLVHWAAEFLHDKRSIGYMIDPSLQSFKDNELDVICEVIQGCIQPDPKLRPTMRDITSRLREVLGVTPEQAVPRLSPLWWAELEILSVEAT*