AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0275530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275530 MtrunA17_Chr3g0082121 72.286 700 181 5 57 752 2 692 0.0 1022
Msa0275530 MtrunA17_Chr2g0324011 47.834 577 291 6 99 668 10 583 0.0 541
Msa0275530 MtrunA17_Chr1g0164591 73.968 315 73 2 177 490 1 307 4.52e-171 496
Msa0275530 MtrunA17_Chr6g0458391 41.653 605 308 12 63 654 194 766 6.71e-156 474
Msa0275530 MtrunA17_Chr6g0458391 40.476 126 72 3 99 223 91 214 1.14e-20 97.4
Msa0275530 MtrunA17_Chr1g0203721 38.473 655 391 8 90 734 54 706 4.92e-153 470
Msa0275530 MtrunA17_Chr5g0448761 34.380 669 415 14 90 739 46 709 1.45e-125 395
Msa0275530 MtrunA17_Chr1g0202341 33.388 605 384 10 63 653 10 609 5.08e-109 349
Msa0275530 MtrunA17_Chr2g0287651 33.524 701 397 20 82 746 45 712 4.14e-107 349
Msa0275530 MtrunA17_Chr8g0363841 33.216 569 356 10 100 653 18 577 1.79e-104 337
Msa0275530 MtrunA17_Chr2g0329031 29.369 681 443 17 94 755 7 668 1.98e-91 303
Msa0275530 MtrunA17_Chr1g0207551 29.500 600 397 8 99 687 34 618 3.18e-89 299
Msa0275530 MtrunA17_Chr7g0258861 51.042 288 132 7 99 380 10 294 2.42e-88 282
Msa0275530 MtrunA17_Chr5g0441581 31.066 647 398 17 99 722 32 653 6.38e-87 290
Msa0275530 MtrunA17_Chr2g0296781 32.049 571 353 14 103 653 1 556 8.66e-84 283
Msa0275530 MtrunA17_Chr5g0440451 30.108 651 410 15 89 715 35 664 9.95e-82 281
Msa0275530 MtrunA17_Chr3g0080351 28.278 633 400 12 99 710 76 675 6.41e-80 275
Msa0275530 MtrunA17_Chr5g0448511 30.095 525 352 6 261 780 1 515 1.18e-79 266
Msa0275530 MtrunA17_Chr2g0276841 30.783 562 380 8 96 650 67 626 3.51e-79 270
Msa0275530 MtrunA17_Chr1g0198761 31.579 570 361 14 105 654 53 613 3.67e-78 268
Msa0275530 MtrunA17_Chr3g0118611 34.298 449 276 9 277 715 122 561 3.99e-78 268
Msa0275530 MtrunA17_Chr1g0203051 29.590 561 354 12 101 640 81 621 1.70e-77 263
Msa0275530 MtrunA17_Chr2g0294841 28.974 604 396 13 79 662 26 616 3.65e-73 254
Msa0275530 MtrunA17_Chr1g0149131 92.857 112 8 0 377 488 1 112 2.98e-71 229
Msa0275530 MtrunA17_Chr6g0477261 32.438 447 282 9 222 653 4 445 1.37e-70 245
Msa0275530 MtrunA17_Chr2g0287061 29.021 572 348 14 99 659 183 707 9.70e-69 243
Msa0275530 MtrunA17_Chr2g0290391 27.820 665 430 20 99 736 51 692 5.65e-67 236
Msa0275530 MtrunA17_Chr1g0196541 28.998 569 367 14 103 650 1 553 3.23e-64 229
Msa0275530 MtrunA17_Chr2g0291581 28.325 579 363 14 99 653 71 621 7.56e-63 224
Msa0275530 MtrunA17_Chr2g0291591 27.966 472 328 6 103 571 68 530 3.87e-56 202
Msa0275530 MtrunA17_Chr5g0431001 29.167 480 307 12 59 510 9 483 1.75e-51 188
Msa0275530 MtrunA17_Chr5g0401121 65.116 129 41 1 75 203 36 160 3.95e-47 165
Msa0275530 MtrunA17_Chr2g0308841 22.581 217 159 5 446 655 15 229 3.70e-17 82.4
Msa0275530 MtrunA17_Chr7g0238821 42.202 109 58 4 103 209 1 106 1.14e-16 76.6
Msa0275530 MtrunA17_Chr7g0233911 33.803 142 79 4 67 201 3 136 2.88e-16 78.6
Msa0275530 MtrunA17_Chr4g0033611 42.056 107 56 3 99 203 76 178 6.29e-16 78.6
Msa0275530 MtrunA17_Chr2g0329421 40.187 107 58 3 99 203 27 129 1.27e-15 76.6
Msa0275530 MtrunA17_Chr3g0078041 38.462 104 62 2 99 201 50 152 1.69e-13 70.9
Msa0275530 MtrunA17_Chr2g0329361 36.190 105 64 2 99 201 61 164 1.60e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275530 AT4G38180.1 34.303 653 410 11 74 712 46 693 3.91e-120 381
Msa0275530 AT4G15090.1 29.695 623 425 6 99 715 51 666 2.88e-97 322
Msa0275530 AT4G15090.5 29.695 623 425 6 99 715 51 666 2.88e-97 322
Msa0275530 AT4G15090.3 29.695 623 425 6 99 715 51 666 2.88e-97 322
Msa0275530 AT4G15090.2 29.695 623 425 6 99 715 51 666 2.88e-97 322
Msa0275530 AT4G15090.4 29.695 623 425 6 99 715 51 666 2.88e-97 322
Msa0275530 AT1G76320.3 30.795 604 390 13 103 698 1 584 2.82e-89 296
Msa0275530 AT1G76320.2 30.795 604 390 13 103 698 1 584 4.62e-89 297
Msa0275530 AT1G76320.1 30.795 604 390 13 103 698 1 584 5.52e-89 297
Msa0275530 AT1G76320.4 30.795 604 390 13 103 698 1 584 5.52e-89 297
Msa0275530 AT3G22170.2 29.839 620 375 13 103 698 74 657 6.89e-89 299
Msa0275530 AT3G22170.1 29.839 620 375 13 103 698 74 657 6.89e-89 299
Msa0275530 AT2G27110.2 30.421 641 392 17 90 711 30 635 1.38e-83 285
Msa0275530 AT2G27110.1 30.421 641 392 17 90 711 30 635 1.38e-83 285
Msa0275530 AT3G06250.2 27.324 710 443 18 11 710 112 758 7.65e-81 276
Msa0275530 AT3G06250.1 27.324 710 443 18 11 710 112 758 7.65e-81 276
Msa0275530 AT3G06250.3 27.324 710 443 18 11 710 112 758 7.65e-81 276
Msa0275530 AT5G18960.2 27.699 704 431 22 20 710 144 782 5.43e-75 260
Msa0275530 AT5G18960.1 27.699 704 431 22 20 710 144 782 5.43e-75 260
Msa0275530 AT2G27110.3 33.860 443 278 9 277 711 55 490 3.06e-74 256
Msa0275530 AT1G10240.2 29.401 568 386 10 93 650 42 604 1.31e-73 254
Msa0275530 AT1G10240.1 29.401 568 386 10 93 650 42 604 1.31e-73 254
Msa0275530 AT2G32250.5 26.202 645 419 14 103 740 42 636 2.28e-70 247
Msa0275530 AT2G32250.8 26.708 644 417 13 103 740 1 595 2.76e-70 247
Msa0275530 AT2G32250.2 26.512 645 417 14 103 740 42 636 3.42e-70 247
Msa0275530 AT2G32250.4 26.512 645 417 14 103 740 42 636 3.42e-70 247
Msa0275530 AT2G32250.7 26.512 645 417 14 103 740 1 595 3.70e-70 246
Msa0275530 AT2G32250.6 26.512 645 417 14 103 740 42 636 3.89e-70 247
Msa0275530 AT2G32250.1 26.512 645 417 14 103 740 42 636 3.89e-70 247
Msa0275530 AT2G32250.3 26.512 645 417 14 103 740 42 636 3.89e-70 247
Msa0275530 AT4G19990.6 27.543 639 392 12 96 708 17 610 5.68e-62 224
Msa0275530 AT4G19990.2 27.543 639 392 12 96 708 17 610 5.68e-62 224
Msa0275530 AT4G19990.3 27.543 639 392 12 96 708 17 610 1.12e-61 222
Msa0275530 AT4G19990.4 27.543 639 392 12 96 708 17 610 1.12e-61 222
Msa0275530 AT4G19990.5 27.543 639 392 12 96 708 17 610 1.37e-61 222
Msa0275530 AT4G19990.7 27.543 639 392 12 96 708 31 624 1.38e-61 222
Msa0275530 AT4G38170.1 30.343 379 253 5 282 654 27 400 5.17e-61 216
Msa0275530 AT5G28530.1 26.167 600 405 14 99 673 55 641 1.98e-59 215
Msa0275530 AT5G28530.3 26.073 606 394 15 99 673 55 637 5.08e-59 213
Msa0275530 AT5G28530.2 26.073 606 394 15 99 673 55 637 5.08e-59 213
Msa0275530 AT1G80010.1 25.914 602 402 12 83 653 73 661 8.77e-55 202
Msa0275530 AT1G52520.1 27.194 581 370 15 97 651 83 636 1.43e-54 201
Msa0275530 AT4G19990.1 27.013 596 365 11 138 708 3 553 4.84e-54 199
Msa0275530 AT5G28530.4 23.379 586 376 14 99 673 55 578 2.16e-39 155
Msa0275530 AT5G28530.5 23.401 594 362 16 99 673 55 574 6.19e-39 154
Msa0275530 AT3G59470.3 35.484 155 88 3 66 210 27 179 1.41e-16 80.9
Msa0275530 AT3G59470.1 35.484 155 88 3 66 210 27 179 1.41e-16 80.9
Msa0275530 AT3G59470.2 35.484 155 88 3 66 210 39 191 1.84e-16 80.9
Msa0275530 AT4G12850.2 38.739 111 64 3 92 202 4 110 7.96e-15 72.8
Msa0275530 AT4G12850.4 38.739 111 64 3 92 202 4 110 9.02e-15 72.4
Msa0275530 AT4G12850.1 38.739 111 64 3 92 202 4 110 1.71e-14 73.2
Msa0275530 AT3G07500.1 40.000 105 62 1 99 203 33 136 4.91e-13 69.7
Msa0275530 AT2G43280.1 38.318 107 58 3 99 201 22 124 1.93e-12 67.8

Find 167 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAATAACAAATATATTT+TGG 0.083882 2_3:+7588769 Msa0275530:CDS
CGCTTCAGTATATAGGTTTC+AGG 0.197476 2_3:-7589788 None:intergenic
TTTGAAGTCTGATTTAAATT+TGG 0.211881 2_3:+7589388 Msa0275530:CDS
TTCAGATTGTGTCAATAAAT+TGG 0.215486 2_3:+7588083 Msa0275530:intron
ATAAATGATTATGGGTATTT+TGG 0.231818 2_3:+7588807 Msa0275530:CDS
TTCATCATTTGCAATTGATA+TGG 0.235636 2_3:-7590065 None:intergenic
CACAATCCATGAAATGTTTC+TGG 0.237682 2_3:-7589074 None:intergenic
GCACAAATGATAAATGATTA+TGG 0.241903 2_3:+7588798 Msa0275530:CDS
AGAGGTGGCTTCGATGATTA+TGG 0.243284 2_3:-7587430 None:intergenic
CTTTAGTGACTGTTTCCTTT+TGG 0.269240 2_3:-7588658 None:intergenic
CACTTTAAAAGAGCTGTTAA+TGG 0.282185 2_3:+7589425 Msa0275530:CDS
TTTGGTATTCGTCGAGAATA+TGG 0.287007 2_3:+7588240 Msa0275530:CDS
ATATATTCATGCAAATCTTT+TGG 0.296908 2_3:-7588567 None:intergenic
CTTGACTTGGTTATGACTCT+TGG 0.305137 2_3:-7590412 None:intergenic
TCTGCTCTAGGCTCCCCTTT+TGG 0.322934 2_3:-7588351 None:intergenic
CATTTCATGGATTGTGCACT+TGG 0.334162 2_3:+7589081 Msa0275530:CDS
AATGAGTATAGTAAAAGAAT+TGG 0.336174 2_3:+7588216 Msa0275530:CDS
CACCACATACAAGACAAATA+AGG 0.340827 2_3:+7588848 Msa0275530:CDS
TGGAACTCCTCAAATATTCT+AGG 0.341058 2_3:-7589554 None:intergenic
CATTGTACCGCTTCATGAAA+TGG 0.342244 2_3:-7589883 None:intergenic
ATGAGTTTCTGAAGCTTTGT+TGG 0.343120 2_3:-7589933 None:intergenic
CGGCCGCTGGGAGTATTTGT+TGG 0.347790 2_3:+7588876 Msa0275530:CDS
ATTGTCTTGGGAGATGAATC+TGG 0.347852 2_3:+7588537 Msa0275530:CDS
ACTTGTTGAGCATAATATAT+TGG 0.354013 2_3:+7589235 Msa0275530:CDS
TTCACCAGATCTCTTTCTCT+TGG 0.356018 2_3:-7590209 None:intergenic
CTGTATTCCACCAGCTTGCT+TGG 0.359827 2_3:-7588592 None:intergenic
GTTATGCCAGAAACATTTCA+TGG 0.360799 2_3:+7589068 Msa0275530:CDS
GGAAATAAAAGCAGAGTTGA+TGG 0.361988 2_3:+7588261 Msa0275530:CDS
GATATTCTTCATATTCCTCT+TGG 0.370740 2_3:-7589574 None:intergenic
TGCCAACAATTTACCTCACT+TGG 0.380095 2_3:+7588152 Msa0275530:CDS
AACAAGAATGGCAGCGGCGC+AGG 0.392471 2_3:-7587588 None:intergenic
TATAGTAAAAGAATTGGATT+TGG 0.393932 2_3:+7588222 Msa0275530:CDS
TGCGTAAAAGATTTGAAAGA+AGG 0.394307 2_3:+7589605 Msa0275530:CDS
AAAGAGTTCACAATTCGGTT+TGG 0.397902 2_3:+7589148 Msa0275530:CDS
AGAAATTAGAACAGGATGTT+TGG 0.398022 2_3:+7588371 Msa0275530:CDS
CACAAATGATAAATGATTAT+GGG 0.400438 2_3:+7588799 Msa0275530:CDS
TGTCCATCGCTTCAGTATAT+AGG 0.401552 2_3:-7589795 None:intergenic
TCGCCGCTGCACCTCTCTCT+TGG 0.403644 2_3:+7587490 Msa0275530:CDS
TTACACTCCTAGAATATTTG+AGG 0.404149 2_3:+7589547 Msa0275530:CDS
TCAAATAACCACTTGAAAGA+AGG 0.406075 2_3:-7588960 None:intergenic
GCTGGACTCTTCATAAACTT+TGG 0.408472 2_3:-7589975 None:intergenic
AGGAAACAGTCACTAAAGTA+TGG 0.410122 2_3:+7588663 Msa0275530:CDS
CCTGTTCTAATTTCTGCTCT+AGG 0.415588 2_3:-7588363 None:intergenic
AGTGTCTTGATCCGTCAAAA+TGG 0.423186 2_3:-7589021 None:intergenic
AATTTAAATCAGACTTCAAA+TGG 0.428063 2_3:-7589385 None:intergenic
AACAGGATGTTTGGCGCGTA+TGG 0.429347 2_3:+7588380 Msa0275530:CDS
ATATAAGACAGAATGCTTTA+CGG 0.434726 2_3:+7589105 Msa0275530:CDS
CGAATTACCTTGAAACCAAA+AGG 0.436415 2_3:+7588643 Msa0275530:CDS
GCATACAATTTATCAATTGA+AGG 0.436807 2_3:+7589271 Msa0275530:CDS
AAATTTAGTACAGTCGTTAC+CGG 0.437312 2_3:+7590231 Msa0275530:CDS
GTTCTATTATGACTTTCAAA+TGG 0.442664 2_3:+7588737 Msa0275530:CDS
ACAAGACAAATAAGGGTTAT+CGG 0.444271 2_3:+7588856 Msa0275530:CDS
ATTGTACCGCTTCATGAAAT+GGG 0.445421 2_3:-7589882 None:intergenic
ACCACATACAAGACAAATAA+GGG 0.447196 2_3:+7588849 Msa0275530:CDS
GAGGTGGCTTCGATGATTAT+GGG 0.448721 2_3:-7587429 None:intergenic
TATCAAAAGAGTTCACAATT+CGG 0.453232 2_3:+7589143 Msa0275530:CDS
GGATGGTCGGAGACGGCGGC+GGG 0.454411 2_3:-7587566 None:intergenic
GACAAAAGACGTCAACCAAA+AGG 0.461065 2_3:+7588336 Msa0275530:CDS
GGGATGGTCGGAGACGGCGG+CGG 0.462743 2_3:-7587567 None:intergenic
TGAAACATTTCTCAAGGCAA+TGG 0.465247 2_3:+7588980 Msa0275530:CDS
GAAACATTTCTCAAGGCAAT+GGG 0.465404 2_3:+7588981 Msa0275530:CDS
TAGTGTTGGTAGCAGGATGA+TGG 0.465525 2_3:-7587538 None:intergenic
CCAACGGAGAGGATAGTTAT+GGG 0.468436 2_3:+7589656 Msa0275530:CDS
GGTTCGTTAGTGTTGGTAGC+AGG 0.468658 2_3:-7587545 None:intergenic
CAAATAACCACTTGAAAGAA+GGG 0.471210 2_3:-7588959 None:intergenic
CCCATAACTATCCTCTCCGT+TGG 0.473881 2_3:-7589656 None:intergenic
TCCAACGGAGAGGATAGTTA+TGG 0.475548 2_3:+7589655 Msa0275530:CDS
GGTTGGGAAGTGATCAAGAT+TGG 0.482271 2_3:+7589828 Msa0275530:CDS
GCTGCCATTCTTGTTGATCA+AGG 0.483741 2_3:+7587596 Msa0275530:CDS
ACCCTTATTTGTCTTGTATG+TGG 0.486140 2_3:-7588850 None:intergenic
CAAAATAATTGATGATATGT+TGG 0.486221 2_3:+7589997 Msa0275530:CDS
TTGGTTAACTTAACCATTCG+AGG 0.487402 2_3:-7589914 None:intergenic
AGTGTTGGTAGCAGGATGAT+GGG 0.490017 2_3:-7587537 None:intergenic
AAATAAGGGTTATCGGCCGC+TGG 0.490759 2_3:+7588863 Msa0275530:CDS
TTCCAAGTGAGGTAAATTGT+TGG 0.492887 2_3:-7588154 None:intergenic
ACAAAAGACGTCAACCAAAA+GGG 0.496414 2_3:+7588337 Msa0275530:CDS
GATAGTTATGGGAAATGCTA+TGG 0.498511 2_3:+7589667 Msa0275530:CDS
CAAATCATATGAACATGCTC+AGG 0.500421 2_3:-7588477 None:intergenic
AGGTGCAGCGGCGAGAGAGA+AGG 0.503028 2_3:-7587481 None:intergenic
ACAAGCATCACAAATTGTCT+TGG 0.503759 2_3:+7588524 Msa0275530:CDS
AGAGGTGACGGCGGAGCCGA+TGG 0.506282 2_3:-7587458 None:intergenic
GACACCGTTGGTATGGCAAA+AGG 0.506522 2_3:+7590100 Msa0275530:CDS
TGCTCCAAGAGAAAGAGATC+TGG 0.508313 2_3:+7590205 Msa0275530:CDS
CCTAGAGCAGAAATTAGAAC+AGG 0.510209 2_3:+7588363 Msa0275530:CDS
TGGTTTCAAGGTAATTCGTA+AGG 0.511193 2_3:-7588638 None:intergenic
GGCAGCGGCGCAGGGATGGT+CGG 0.512257 2_3:-7587579 None:intergenic
TGGACAAGAAATGCAAGGTT+GGG 0.513978 2_3:+7589812 Msa0275530:CDS
ATGGACAAGAAATGCAAGGT+TGG 0.517510 2_3:+7589811 Msa0275530:CDS
CAAGCATCACAAATTGTCTT+GGG 0.518135 2_3:+7588525 Msa0275530:CDS
CGAGAGAGAAGGAGAGGTGA+CGG 0.518457 2_3:-7587470 None:intergenic
GTTATTTGAAACATTTCTCA+AGG 0.522402 2_3:+7588974 Msa0275530:CDS
GGAAATGAAGTTTGATTCTG+AGG 0.525153 2_3:+7588173 Msa0275530:CDS
GTTGAGCATAATATATTGGA+AGG 0.525933 2_3:+7589239 Msa0275530:CDS
ATCGAGAAAGTTCACGCAAG+CGG 0.527366 2_3:+7590131 Msa0275530:CDS
GGGTTCGCTCATGACGTTGA+CGG 0.529975 2_3:-7587516 None:intergenic
GGCGCAGGGATGGTCGGAGA+CGG 0.533543 2_3:-7587573 None:intergenic
AATGGGCATGGACATATGTC+CGG 0.534093 2_3:+7589297 Msa0275530:CDS
AAACAATCCCTTCTTTCAAG+TGG 0.538998 2_3:+7588952 Msa0275530:CDS
GAATGGCAGCGGCGCAGGGA+TGG 0.540116 2_3:-7587583 None:intergenic
GAGCCGATGGGAAGGAGAGG+TGG 0.542092 2_3:-7587445 None:intergenic
GAAGTTTGATTCTGAGGCAG+CGG 0.545649 2_3:+7588179 Msa0275530:CDS
GCCTAGATTGAAAATGAAGA+AGG 0.546195 2_3:+7589496 Msa0275530:CDS
TCAAGACACTGCGATGGCTA+AGG 0.547319 2_3:+7589034 Msa0275530:CDS
GCGACACAATCAAGTCAAGT+TGG 0.547894 2_3:+7590362 Msa0275530:CDS
CAATGTGGACACCGTTGGTA+TGG 0.550134 2_3:+7590093 Msa0275530:CDS
GTCACTAAAGTATGGTGAGG+TGG 0.552933 2_3:+7588671 Msa0275530:CDS
GAAGTGATCAAGATTGGAAA+GGG 0.552959 2_3:+7589834 Msa0275530:CDS
TGACGGCGGAGCCGATGGGA+AGG 0.554360 2_3:-7587453 None:intergenic
GTCCGGAAAACATTCACTGC+AGG 0.554763 2_3:+7589314 Msa0275530:CDS
ATTACCTTGATCAACAAGAA+TGG 0.557192 2_3:-7587600 None:intergenic
GCAGGGATGGTCGGAGACGG+CGG 0.559162 2_3:-7587570 None:intergenic
TCACTAAAGTATGGTGAGGT+GGG 0.560370 2_3:+7588672 Msa0275530:CDS
GAGGTGACGGCGGAGCCGAT+GGG 0.566590 2_3:-7587457 None:intergenic
TTGTTGGACTAAATAATCAC+AGG 0.567844 2_3:+7588892 Msa0275530:CDS
AATAAGGGTTATCGGCCGCT+GGG 0.572692 2_3:+7588864 Msa0275530:CDS
AGGTGGCTTCGATGATTATG+GGG 0.574034 2_3:-7587428 None:intergenic
TCAAACTTCATTTCCAAGTG+AGG 0.576931 2_3:-7588165 None:intergenic
GGCGGCGGGTTCGTTAGTGT+TGG 0.578521 2_3:-7587552 None:intergenic
ACAAGAATGGCAGCGGCGCA+GGG 0.579952 2_3:-7587587 None:intergenic
CAAAATGTGCAACACGGACA+AGG 0.581561 2_3:+7588123 Msa0275530:CDS
GTGTTGGTAGCAGGATGATG+GGG 0.582430 2_3:-7587536 None:intergenic
GGAAGTGATCAAGATTGGAA+AGG 0.584639 2_3:+7589833 Msa0275530:CDS
GCGGAGCCGATGGGAAGGAG+AGG 0.584685 2_3:-7587448 None:intergenic
GTATGGTTATTTCACTCGAT+CGG 0.586251 2_3:+7588397 Msa0275530:CDS
GGATGGAGAATCAGAGGGCA+TGG 0.588066 2_3:+7590033 Msa0275530:CDS
TATATATCCAAGCAAGCTGG+TGG 0.588298 2_3:+7588585 Msa0275530:CDS
AGGCCAAGAGAGAGGTGCAG+CGG 0.588322 2_3:-7587493 None:intergenic
ATAATATATTGGAAGGGTCG+TGG 0.588775 2_3:+7589246 Msa0275530:CDS
CAATGAGTTATGTCCTCGAA+TGG 0.589590 2_3:+7589901 Msa0275530:CDS
GAATATATATCCAAGCAAGC+TGG 0.590655 2_3:+7588582 Msa0275530:CDS
AAACCTATATACTGAAGCGA+TGG 0.592444 2_3:+7589792 Msa0275530:CDS
CAGCGGCGAGAGAGAAGGAG+AGG 0.595013 2_3:-7587476 None:intergenic
GCTGGTGGAATACAGACAGT+TGG 0.597501 2_3:+7588600 Msa0275530:CDS
GAGAGAAGGAGAGGTGACGG+CGG 0.598157 2_3:-7587467 None:intergenic
CATGCTCAGGTTGAAGTTGG+TGG 0.600927 2_3:-7588464 None:intergenic
GTATGTGGATGGAGAATCAG+AGG 0.603406 2_3:+7590027 Msa0275530:CDS
CAAAAGACGTCAACCAAAAG+GGG 0.607006 2_3:+7588338 Msa0275530:CDS
GAACATGCTCAGGTTGAAGT+TGG 0.607804 2_3:-7588467 None:intergenic
TTGATCAACAAGAATGGCAG+CGG 0.608431 2_3:-7587594 None:intergenic
TAAAAGCCCATTTCATGAAG+CGG 0.608976 2_3:+7589876 Msa0275530:CDS
TGTCGTAAATTTGAGACACA+TGG 0.610330 2_3:+7589710 Msa0275530:CDS
CAATCAAGTCAAGTTGGCAA+TGG 0.617634 2_3:+7590368 Msa0275530:CDS
AAGATTCACATGCTACAAAG+AGG 0.619398 2_3:+7588299 Msa0275530:CDS
TTGAGCATAATATATTGGAA+GGG 0.622690 2_3:+7589240 Msa0275530:CDS
GATAGATGTACATGAAGATG+AGG 0.623151 2_3:+7589184 Msa0275530:CDS
GTGATCAAGATTGGAAAGGG+AGG 0.630069 2_3:+7589837 Msa0275530:CDS
GACGGATCAAGACACTGCGA+TGG 0.636401 2_3:+7589028 Msa0275530:CDS
TGCTACAAAGAGGGTGTACG+AGG 0.638548 2_3:+7588309 Msa0275530:CDS
ACATTTCTCAAGGCAATGGG+TGG 0.644607 2_3:+7588984 Msa0275530:CDS
GTTGACGGAGGCCAAGAGAG+AGG 0.651480 2_3:-7587501 None:intergenic
AGCGATGGACAAGAAATGCA+AGG 0.651903 2_3:+7589807 Msa0275530:CDS
TGAAAGTCATAATAGAACGA+GGG 0.653626 2_3:-7588732 None:intergenic
AGATTCACATGCTACAAAGA+GGG 0.654496 2_3:+7588300 Msa0275530:CDS
CACAAACTATGATAATCCAA+CGG 0.657053 2_3:+7589640 Msa0275530:CDS
CATGAACAAAATGTGCAACA+CGG 0.658217 2_3:+7588117 Msa0275530:CDS
AAGCCACCTCTCCTTCCCAT+CGG 0.662631 2_3:+7587442 Msa0275530:CDS
TTCGCTCATGACGTTGACGG+AGG 0.668655 2_3:-7587513 None:intergenic
ATTGACAATGTGGACACCGT+TGG 0.671830 2_3:+7590088 Msa0275530:CDS
ACAGTCACTAAAGTATGGTG+AGG 0.682809 2_3:+7588668 Msa0275530:CDS
ATAGATGTACATGAAGATGA+GGG 0.683860 2_3:+7589185 Msa0275530:CDS
GGTGGCTTCGATGATTATGG+GGG 0.689530 2_3:-7587427 None:intergenic
AATATTTGAGGAGTTCCAAG+AGG 0.693235 2_3:+7589559 Msa0275530:CDS
TTGAAAGTCATAATAGAACG+AGG 0.700448 2_3:-7588733 None:intergenic
AAATGATGAAATTGACAATG+TGG 0.705740 2_3:+7590078 Msa0275530:CDS
TATGTGGATGGAGAATCAGA+GGG 0.721169 2_3:+7590028 Msa0275530:CDS
ACTATGATAATCCAACGGAG+AGG 0.733483 2_3:+7589645 Msa0275530:CDS
AGTCCAACAAATACTCCCAG+CGG 0.740002 2_3:-7588879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CACAATATATATATATATAT+AGG + chr2_3:7587089-7587108 Msa0275530:intron 10.0%
!! CAATATATATATATATATAG+GGG + chr2_3:7587091-7587110 Msa0275530:intron 10.0%
!!! TATATATATATATAGCTTTA+TGG + chr2_3:7587762-7587781 Msa0275530:intron 10.0%
!! ATTACTATTAAAAAAACATT+GGG - chr2_3:7587827-7587846 None:intergenic 10.0%
!! TATTACTATTAAAAAAACAT+TGG - chr2_3:7587828-7587847 None:intergenic 10.0%
!! GAAAAGATAAATAAATAATA+TGG - chr2_3:7590311-7590330 None:intergenic 10.0%
!!! TTACACTTTTTAAATGATAA+AGG + chr2_3:7587050-7587069 Msa0275530:intron 15.0%
!! TTACTATTAAAAAAACATTG+GGG - chr2_3:7587826-7587845 None:intergenic 15.0%
!! AAAACCAAAATTTACAATTA+AGG - chr2_3:7588063-7588082 None:intergenic 15.0%
!!! AGCAAATAACAAATATATTT+TGG + chr2_3:7588769-7588788 Msa0275530:CDS 15.0%
!!! GCAAATAACAAATATATTTT+GGG + chr2_3:7588770-7588789 Msa0275530:CDS 15.0%
!! TGTGGAAAAAATAAAATCAA+TGG + chr2_3:7587294-7587313 Msa0275530:intron 20.0%
!! GAAAAATCAATTCTTTAATG+AGG + chr2_3:7587335-7587354 Msa0275530:intron 20.0%
!!! TTGATGAAAAATTAGTTTCT+AGG + chr2_3:7587685-7587704 Msa0275530:intron 20.0%
!! TACTATTAAAAAAACATTGG+GGG - chr2_3:7587825-7587844 None:intergenic 20.0%
!!! AATAGTAATAGATAGCTTTA+TGG + chr2_3:7587838-7587857 Msa0275530:intron 20.0%
!! AATGAGTATAGTAAAAGAAT+TGG + chr2_3:7588216-7588235 Msa0275530:CDS 20.0%
!! TATAGTAAAAGAATTGGATT+TGG + chr2_3:7588222-7588241 Msa0275530:CDS 20.0%
!!! ATATATTCATGCAAATCTTT+TGG - chr2_3:7588570-7588589 None:intergenic 20.0%
!!! AATAACAAATATATTTTGGG+CGG + chr2_3:7588773-7588792 Msa0275530:CDS 20.0%
!! CACAAATGATAAATGATTAT+GGG + chr2_3:7588799-7588818 Msa0275530:CDS 20.0%
!!! ATAAATGATTATGGGTATTT+TGG + chr2_3:7588807-7588826 Msa0275530:CDS 20.0%
!! TTTATCAATTGAAGGAAAAA+TGG + chr2_3:7589279-7589298 Msa0275530:CDS 20.0%
!! TTATCAATTGAAGGAAAAAT+GGG + chr2_3:7589280-7589299 Msa0275530:CDS 20.0%
!! AATTTAAATCAGACTTCAAA+TGG - chr2_3:7589388-7589407 None:intergenic 20.0%
!!! TTTGAAGTCTGATTTAAATT+TGG + chr2_3:7589388-7589407 Msa0275530:CDS 20.0%
!!! CAAAATAATTGATGATATGT+TGG + chr2_3:7589997-7590016 Msa0275530:CDS 20.0%
!! TAAATAATATGGTTTCTTAC+CGG - chr2_3:7590300-7590319 None:intergenic 20.0%
! ACACCTTAATAAAAACTAGT+GGG - chr2_3:7587131-7587150 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG + chr2_3:7587174-7587193 Msa0275530:intron 25.0%
! GGCAAATAATAAAATAGAGA+AGG - chr2_3:7587634-7587653 None:intergenic 25.0%
! AACATCATGTAATAAAGAGA+CGG - chr2_3:7587655-7587674 None:intergenic 25.0%
! TTCAGATTGTGTCAATAAAT+TGG + chr2_3:7588083-7588102 Msa0275530:intron 25.0%
! GTTCTATTATGACTTTCAAA+TGG + chr2_3:7588737-7588756 Msa0275530:CDS 25.0%
! GCACAAATGATAAATGATTA+TGG + chr2_3:7588798-7588817 Msa0275530:CDS 25.0%
!! GTTATTTGAAACATTTCTCA+AGG + chr2_3:7588974-7588993 Msa0275530:CDS 25.0%
! ATATAAGACAGAATGCTTTA+CGG + chr2_3:7589105-7589124 Msa0275530:CDS 25.0%
! TATCAAAAGAGTTCACAATT+CGG + chr2_3:7589143-7589162 Msa0275530:CDS 25.0%
!! ACTTGTTGAGCATAATATAT+TGG + chr2_3:7589235-7589254 Msa0275530:CDS 25.0%
! TTGAGCATAATATATTGGAA+GGG + chr2_3:7589240-7589259 Msa0275530:CDS 25.0%
! GCATACAATTTATCAATTGA+AGG + chr2_3:7589271-7589290 Msa0275530:CDS 25.0%
!!! CATATCATCAATTATTTTGC+TGG - chr2_3:7589996-7590015 None:intergenic 25.0%
! TTCATCATTTGCAATTGATA+TGG - chr2_3:7590068-7590087 None:intergenic 25.0%
! AAATGATGAAATTGACAATG+TGG + chr2_3:7590078-7590097 Msa0275530:CDS 25.0%
! CATAGATAAAAACTACTTAC+CGG - chr2_3:7590253-7590272 None:intergenic 25.0%
! TATATATATAGGGGTTTGCT+AGG + chr2_3:7587100-7587119 Msa0275530:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG + chr2_3:7587125-7587144 Msa0275530:intron 30.0%
CACACCTTAATAAAAACTAG+TGG - chr2_3:7587132-7587151 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG - chr2_3:7587192-7587211 None:intergenic 30.0%
!!! AGATGCACTCATTTTTTAGA+AGG - chr2_3:7587219-7587238 None:intergenic 30.0%
GTAAATTGAGCAAAGTGAAA+TGG - chr2_3:7587247-7587266 None:intergenic 30.0%
AATCAATGGCTGTGATTAAA+TGG + chr2_3:7587308-7587327 Msa0275530:intron 30.0%
ATTACCTTGATCAACAAGAA+TGG - chr2_3:7587603-7587622 None:intergenic 30.0%
TTAAAAAAACATTGGGGGAA+AGG - chr2_3:7587820-7587839 None:intergenic 30.0%
!!! ATGCAGTCTAAGTTTTTTAG+TGG + chr2_3:7587874-7587893 Msa0275530:intron 30.0%
!! GTGGCCTTAATTGTAAATTT+TGG + chr2_3:7588056-7588075 Msa0275530:intron 30.0%
AGAAATTAGAACAGGATGTT+TGG + chr2_3:7588371-7588390 Msa0275530:CDS 30.0%
TGAAAGTCATAATAGAACGA+GGG - chr2_3:7588735-7588754 None:intergenic 30.0%
TTGAAAGTCATAATAGAACG+AGG - chr2_3:7588736-7588755 None:intergenic 30.0%
ACCACATACAAGACAAATAA+GGG + chr2_3:7588849-7588868 Msa0275530:CDS 30.0%
ACAAGACAAATAAGGGTTAT+CGG + chr2_3:7588856-7588875 Msa0275530:CDS 30.0%
TTGTTGGACTAAATAATCAC+AGG + chr2_3:7588892-7588911 Msa0275530:CDS 30.0%
CAAATAACCACTTGAAAGAA+GGG - chr2_3:7588962-7588981 None:intergenic 30.0%
TCAAATAACCACTTGAAAGA+AGG - chr2_3:7588963-7588982 None:intergenic 30.0%
! AAAGCCAAAAACCATTTTGA+CGG + chr2_3:7589010-7589029 Msa0275530:CDS 30.0%
! GTGAACTCTTTTGATATAAG+TGG - chr2_3:7589139-7589158 None:intergenic 30.0%
ATAGATGTACATGAAGATGA+GGG + chr2_3:7589185-7589204 Msa0275530:CDS 30.0%
GTTGAGCATAATATATTGGA+AGG + chr2_3:7589239-7589258 Msa0275530:CDS 30.0%
! CACTTTAAAAGAGCTGTTAA+TGG + chr2_3:7589425-7589444 Msa0275530:CDS 30.0%
TTACACTCCTAGAATATTTG+AGG + chr2_3:7589547-7589566 Msa0275530:CDS 30.0%
GATATTCTTCATATTCCTCT+TGG - chr2_3:7589577-7589596 None:intergenic 30.0%
TGCGTAAAAGATTTGAAAGA+AGG + chr2_3:7589605-7589624 Msa0275530:CDS 30.0%
CACAAACTATGATAATCCAA+CGG + chr2_3:7589640-7589659 Msa0275530:CDS 30.0%
GGAAAAAGCGATATAAATCT+TGG + chr2_3:7590152-7590171 Msa0275530:CDS 30.0%
AAATTTAGTACAGTCGTTAC+CGG + chr2_3:7590231-7590250 Msa0275530:CDS 30.0%
!! AATTTTAGTACAGTCGTTAC+CGG + chr2_3:7590278-7590297 Msa0275530:intron 30.0%
ATTTACCCCATTTGAAGACA+TGG + chr2_3:7587261-7587280 Msa0275530:intron 35.0%
ACACATCCATGTCTTCAAAT+GGG - chr2_3:7587270-7587289 None:intergenic 35.0%
!! AAGTTTTCTGAGAAAGGAAG+AGG - chr2_3:7587396-7587415 None:intergenic 35.0%
!! AAAACAACATTCTGAAGTCG+CGG - chr2_3:7587982-7588001 None:intergenic 35.0%
! ATGTCTGAAATCGTCACTTA+TGG + chr2_3:7588034-7588053 Msa0275530:intron 35.0%
CATGAACAAAATGTGCAACA+CGG + chr2_3:7588117-7588136 Msa0275530:CDS 35.0%
TTCCAAGTGAGGTAAATTGT+TGG - chr2_3:7588157-7588176 None:intergenic 35.0%
TCAAACTTCATTTCCAAGTG+AGG - chr2_3:7588168-7588187 None:intergenic 35.0%
GGAAATGAAGTTTGATTCTG+AGG + chr2_3:7588173-7588192 Msa0275530:CDS 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr2_3:7588240-7588259 Msa0275530:CDS 35.0%
GGAAATAAAAGCAGAGTTGA+TGG + chr2_3:7588261-7588280 Msa0275530:CDS 35.0%
AAGATTCACATGCTACAAAG+AGG + chr2_3:7588299-7588318 Msa0275530:CDS 35.0%
AGATTCACATGCTACAAAGA+GGG + chr2_3:7588300-7588319 Msa0275530:CDS 35.0%
ACAAAAGACGTCAACCAAAA+GGG + chr2_3:7588337-7588356 Msa0275530:CDS 35.0%
! GTATGGTTATTTCACTCGAT+CGG + chr2_3:7588397-7588416 Msa0275530:CDS 35.0%
CAAATCATATGAACATGCTC+AGG - chr2_3:7588480-7588499 None:intergenic 35.0%
ACAAGCATCACAAATTGTCT+TGG + chr2_3:7588524-7588543 Msa0275530:CDS 35.0%
CAAGCATCACAAATTGTCTT+GGG + chr2_3:7588525-7588544 Msa0275530:CDS 35.0%
GAATATATATCCAAGCAAGC+TGG + chr2_3:7588582-7588601 Msa0275530:CDS 35.0%
TGGTTTCAAGGTAATTCGTA+AGG - chr2_3:7588641-7588660 None:intergenic 35.0%
CGAATTACCTTGAAACCAAA+AGG + chr2_3:7588643-7588662 Msa0275530:CDS 35.0%
!!! ACTGTTTCCTTTTGGTTTCA+AGG - chr2_3:7588653-7588672 None:intergenic 35.0%
! CTTTAGTGACTGTTTCCTTT+TGG - chr2_3:7588661-7588680 None:intergenic 35.0%
AGGAAACAGTCACTAAAGTA+TGG + chr2_3:7588663-7588682 Msa0275530:CDS 35.0%
CACCACATACAAGACAAATA+AGG + chr2_3:7588848-7588867 Msa0275530:CDS 35.0%
! ACCCTTATTTGTCTTGTATG+TGG - chr2_3:7588853-7588872 None:intergenic 35.0%
AAACAATCCCTTCTTTCAAG+TGG + chr2_3:7588952-7588971 Msa0275530:CDS 35.0%
TGAAACATTTCTCAAGGCAA+TGG + chr2_3:7588980-7588999 Msa0275530:CDS 35.0%
GAAACATTTCTCAAGGCAAT+GGG + chr2_3:7588981-7589000 Msa0275530:CDS 35.0%
! TGATCCGTCAAAATGGTTTT+TGG - chr2_3:7589017-7589036 None:intergenic 35.0%
GTTATGCCAGAAACATTTCA+TGG + chr2_3:7589068-7589087 Msa0275530:CDS 35.0%
CACAATCCATGAAATGTTTC+TGG - chr2_3:7589077-7589096 None:intergenic 35.0%
AAAGAGTTCACAATTCGGTT+TGG + chr2_3:7589148-7589167 Msa0275530:CDS 35.0%
GATAGATGTACATGAAGATG+AGG + chr2_3:7589184-7589203 Msa0275530:CDS 35.0%
! AGGGTGAATTTTTGAATGCT+TGG + chr2_3:7589204-7589223 Msa0275530:CDS 35.0%
ATAATATATTGGAAGGGTCG+TGG + chr2_3:7589246-7589265 Msa0275530:CDS 35.0%
AATTGAAGGAAAAATGGGCA+TGG + chr2_3:7589285-7589304 Msa0275530:CDS 35.0%
GCCTAGATTGAAAATGAAGA+AGG + chr2_3:7589496-7589515 Msa0275530:CDS 35.0%
! GCCTTCTTCATTTTCAATCT+AGG - chr2_3:7589500-7589519 None:intergenic 35.0%
TGGAACTCCTCAAATATTCT+AGG - chr2_3:7589557-7589576 None:intergenic 35.0%
AATATTTGAGGAGTTCCAAG+AGG + chr2_3:7589559-7589578 Msa0275530:CDS 35.0%
GATAGTTATGGGAAATGCTA+TGG + chr2_3:7589667-7589686 Msa0275530:CDS 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr2_3:7589710-7589729 Msa0275530:CDS 35.0%
AAACCTATATACTGAAGCGA+TGG + chr2_3:7589792-7589811 Msa0275530:CDS 35.0%
GAAGTGATCAAGATTGGAAA+GGG + chr2_3:7589834-7589853 Msa0275530:CDS 35.0%
TAAAAGCCCATTTCATGAAG+CGG + chr2_3:7589876-7589895 Msa0275530:CDS 35.0%
ATTGTACCGCTTCATGAAAT+GGG - chr2_3:7589885-7589904 None:intergenic 35.0%
TTGGTTAACTTAACCATTCG+AGG - chr2_3:7589917-7589936 None:intergenic 35.0%
!! ATGAGTTTCTGAAGCTTTGT+TGG - chr2_3:7589936-7589955 None:intergenic 35.0%
! TATGTTGGCCAAAAAGTATG+TGG + chr2_3:7590012-7590031 Msa0275530:CDS 35.0%
! TTCTCCATCCACATACTTTT+TGG - chr2_3:7590023-7590042 None:intergenic 35.0%
CACATCCATGTCTTCAAATG+GGG - chr2_3:7587269-7587288 None:intergenic 40.0%
CACACATCCATGTCTTCAAA+TGG - chr2_3:7587271-7587290 None:intergenic 40.0%
ATGGCTGTGATTAAATGGCT+TGG + chr2_3:7587313-7587332 Msa0275530:intron 40.0%
!! GGTGGAAAGTTTTCTGAGAA+AGG - chr2_3:7587402-7587421 None:intergenic 40.0%
TTGATCAACAAGAATGGCAG+CGG - chr2_3:7587597-7587616 None:intergenic 40.0%
AAAAACATTGGGGGAAAGGA+TGG - chr2_3:7587816-7587835 None:intergenic 40.0%
! TCTGAAATCGTCACTTATGG+TGG + chr2_3:7588037-7588056 Msa0275530:intron 40.0%
TGCCAACAATTTACCTCACT+TGG + chr2_3:7588152-7588171 Msa0275530:CDS 40.0%
GACAAAAGACGTCAACCAAA+AGG + chr2_3:7588336-7588355 Msa0275530:CDS 40.0%
CAAAAGACGTCAACCAAAAG+GGG + chr2_3:7588338-7588357 Msa0275530:CDS 40.0%
CCTGTTCTAATTTCTGCTCT+AGG - chr2_3:7588366-7588385 None:intergenic 40.0%
CCTAGAGCAGAAATTAGAAC+AGG + chr2_3:7588363-7588382 Msa0275530:CDS 40.0%
ATTGTCTTGGGAGATGAATC+TGG + chr2_3:7588537-7588556 Msa0275530:CDS 40.0%
TATATATCCAAGCAAGCTGG+TGG + chr2_3:7588585-7588604 Msa0275530:CDS 40.0%
ACAGTCACTAAAGTATGGTG+AGG + chr2_3:7588668-7588687 Msa0275530:CDS 40.0%
TCACTAAAGTATGGTGAGGT+GGG + chr2_3:7588672-7588691 Msa0275530:CDS 40.0%
!! CACAGGCAAACAGTCATTTT+TGG + chr2_3:7588909-7588928 Msa0275530:CDS 40.0%
AGTGTCTTGATCCGTCAAAA+TGG - chr2_3:7589024-7589043 None:intergenic 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr2_3:7589081-7589100 Msa0275530:CDS 40.0%
! TACCTGCAGTGAATGTTTTC+CGG - chr2_3:7589319-7589338 None:intergenic 40.0%
ACTATGATAATCCAACGGAG+AGG + chr2_3:7589645-7589664 Msa0275530:CDS 40.0%
CGCTTCAGTATATAGGTTTC+AGG - chr2_3:7589791-7589810 None:intergenic 40.0%
TGTCCATCGCTTCAGTATAT+AGG - chr2_3:7589798-7589817 None:intergenic 40.0%
ATGGACAAGAAATGCAAGGT+TGG + chr2_3:7589811-7589830 Msa0275530:CDS 40.0%
TGGACAAGAAATGCAAGGTT+GGG + chr2_3:7589812-7589831 Msa0275530:CDS 40.0%
GGAAGTGATCAAGATTGGAA+AGG + chr2_3:7589833-7589852 Msa0275530:CDS 40.0%
CATTGTACCGCTTCATGAAA+TGG - chr2_3:7589886-7589905 None:intergenic 40.0%
CAATGAGTTATGTCCTCGAA+TGG + chr2_3:7589901-7589920 Msa0275530:CDS 40.0%
GCTGGACTCTTCATAAACTT+TGG - chr2_3:7589978-7589997 None:intergenic 40.0%
! TTGGCCAAAAAGTATGTGGA+TGG + chr2_3:7590016-7590035 Msa0275530:CDS 40.0%
TATGTGGATGGAGAATCAGA+GGG + chr2_3:7590028-7590047 Msa0275530:CDS 40.0%
! TATGCCTTTTGCCATACCAA+CGG - chr2_3:7590107-7590126 None:intergenic 40.0%
TTCACCAGATCTCTTTCTCT+TGG - chr2_3:7590212-7590231 None:intergenic 40.0%
!! CAATCAAGTCAAGTTGGCAA+TGG + chr2_3:7590368-7590387 Msa0275530:CDS 40.0%
AGACATGGATGTGTGACATG+TGG + chr2_3:7587276-7587295 Msa0275530:intron 45.0%
AGGTGGCTTCGATGATTATG+GGG - chr2_3:7587431-7587450 None:intergenic 45.0%
GAGGTGGCTTCGATGATTAT+GGG - chr2_3:7587432-7587451 None:intergenic 45.0%
AGAGGTGGCTTCGATGATTA+TGG - chr2_3:7587433-7587452 None:intergenic 45.0%
!! AGTGTTGGTAGCAGGATGAT+GGG - chr2_3:7587540-7587559 None:intergenic 45.0%
!! TAGTGTTGGTAGCAGGATGA+TGG - chr2_3:7587541-7587560 None:intergenic 45.0%
GCTGCCATTCTTGTTGATCA+AGG + chr2_3:7587596-7587615 Msa0275530:CDS 45.0%
CAAAATGTGCAACACGGACA+AGG + chr2_3:7588123-7588142 Msa0275530:CDS 45.0%
!! GAAGTTTGATTCTGAGGCAG+CGG + chr2_3:7588179-7588198 Msa0275530:CDS 45.0%
!! GAACATGCTCAGGTTGAAGT+TGG - chr2_3:7588470-7588489 None:intergenic 45.0%
GTCACTAAAGTATGGTGAGG+TGG + chr2_3:7588671-7588690 Msa0275530:CDS 45.0%
AGTCCAACAAATACTCCCAG+CGG - chr2_3:7588882-7588901 None:intergenic 45.0%
ACATTTCTCAAGGCAATGGG+TGG + chr2_3:7588984-7589003 Msa0275530:CDS 45.0%
AATGGGCATGGACATATGTC+CGG + chr2_3:7589297-7589316 Msa0275530:CDS 45.0%
TCCAACGGAGAGGATAGTTA+TGG + chr2_3:7589655-7589674 Msa0275530:CDS 45.0%
CCAACGGAGAGGATAGTTAT+GGG + chr2_3:7589656-7589675 Msa0275530:CDS 45.0%
AGCGATGGACAAGAAATGCA+AGG + chr2_3:7589807-7589826 Msa0275530:CDS 45.0%
GGTTGGGAAGTGATCAAGAT+TGG + chr2_3:7589828-7589847 Msa0275530:CDS 45.0%
GTGATCAAGATTGGAAAGGG+AGG + chr2_3:7589837-7589856 Msa0275530:CDS 45.0%
GTATGTGGATGGAGAATCAG+AGG + chr2_3:7590027-7590046 Msa0275530:CDS 45.0%
ATTGACAATGTGGACACCGT+TGG + chr2_3:7590088-7590107 Msa0275530:CDS 45.0%
ATCGAGAAAGTTCACGCAAG+CGG + chr2_3:7590131-7590150 Msa0275530:CDS 45.0%
TGCTCCAAGAGAAAGAGATC+TGG + chr2_3:7590205-7590224 Msa0275530:CDS 45.0%
GCGACACAATCAAGTCAAGT+TGG + chr2_3:7590362-7590381 Msa0275530:CDS 45.0%
!! ACAATATATATATATATATA+GGG + chr2_3:7587090-7587109 Msa0275530:intron 5.0%
ATGATTATGGGGGAGGAAGG+TGG - chr2_3:7587420-7587439 None:intergenic 50.0%
TCGATGATTATGGGGGAGGA+AGG - chr2_3:7587423-7587442 None:intergenic 50.0%
GGTGGCTTCGATGATTATGG+GGG - chr2_3:7587430-7587449 None:intergenic 50.0%
!! GTGTTGGTAGCAGGATGATG+GGG - chr2_3:7587539-7587558 None:intergenic 50.0%
!! GGTTCGTTAGTGTTGGTAGC+AGG - chr2_3:7587548-7587567 None:intergenic 50.0%
! TGCTACAAAGAGGGTGTACG+AGG + chr2_3:7588309-7588328 Msa0275530:CDS 50.0%
AACAGGATGTTTGGCGCGTA+TGG + chr2_3:7588380-7588399 Msa0275530:CDS 50.0%
!! CATGCTCAGGTTGAAGTTGG+TGG - chr2_3:7588467-7588486 None:intergenic 50.0%
! CTGTATTCCACCAGCTTGCT+TGG - chr2_3:7588595-7588614 None:intergenic 50.0%
GCTGGTGGAATACAGACAGT+TGG + chr2_3:7588600-7588619 Msa0275530:CDS 50.0%
AAATAAGGGTTATCGGCCGC+TGG + chr2_3:7588863-7588882 Msa0275530:CDS 50.0%
AATAAGGGTTATCGGCCGCT+GGG + chr2_3:7588864-7588883 Msa0275530:CDS 50.0%
TCAAGACACTGCGATGGCTA+AGG + chr2_3:7589034-7589053 Msa0275530:CDS 50.0%
GTCCGGAAAACATTCACTGC+AGG + chr2_3:7589314-7589333 Msa0275530:CDS 50.0%
CCCATAACTATCCTCTCCGT+TGG - chr2_3:7589659-7589678 None:intergenic 50.0%
CAATGTGGACACCGTTGGTA+TGG + chr2_3:7590093-7590112 Msa0275530:CDS 50.0%
GACACCGTTGGTATGGCAAA+AGG + chr2_3:7590100-7590119 Msa0275530:CDS 50.0%
GGCTTCGATGATTATGGGGG+AGG - chr2_3:7587427-7587446 None:intergenic 55.0%
AAGCCACCTCTCCTTCCCAT+CGG + chr2_3:7587442-7587461 Msa0275530:CDS 55.0%
CGAGAGAGAAGGAGAGGTGA+CGG - chr2_3:7587473-7587492 None:intergenic 55.0%
TTCGCTCATGACGTTGACGG+AGG - chr2_3:7587516-7587535 None:intergenic 55.0%
GGGTTCGCTCATGACGTTGA+CGG - chr2_3:7587519-7587538 None:intergenic 55.0%
!! TCTGCTCTAGGCTCCCCTTT+TGG - chr2_3:7588354-7588373 None:intergenic 55.0%
GACGGATCAAGACACTGCGA+TGG + chr2_3:7589028-7589047 Msa0275530:CDS 55.0%
GGATGGAGAATCAGAGGGCA+TGG + chr2_3:7590033-7590052 Msa0275530:CDS 55.0%
! GAGAGAAGGAGAGGTGACGG+CGG - chr2_3:7587470-7587489 None:intergenic 60.0%
! AGGCCAAGAGAGAGGTGCAG+CGG - chr2_3:7587496-7587515 None:intergenic 60.0%
GTTGACGGAGGCCAAGAGAG+AGG - chr2_3:7587504-7587523 None:intergenic 60.0%
ACAAGAATGGCAGCGGCGCA+GGG - chr2_3:7587590-7587609 None:intergenic 60.0%
AACAAGAATGGCAGCGGCGC+AGG - chr2_3:7587591-7587610 None:intergenic 60.0%
!! CGGCCGCTGGGAGTATTTGT+TGG + chr2_3:7588876-7588895 Msa0275530:CDS 60.0%
GAGCCGATGGGAAGGAGAGG+TGG - chr2_3:7587448-7587467 None:intergenic 65.0%
CAGCGGCGAGAGAGAAGGAG+AGG - chr2_3:7587479-7587498 None:intergenic 65.0%
AGGTGCAGCGGCGAGAGAGA+AGG - chr2_3:7587484-7587503 None:intergenic 65.0%
TCGCCGCTGCACCTCTCTCT+TGG + chr2_3:7587490-7587509 Msa0275530:CDS 65.0%
! GGCGGCGGGTTCGTTAGTGT+TGG - chr2_3:7587555-7587574 None:intergenic 65.0%
GCGGAGCCGATGGGAAGGAG+AGG - chr2_3:7587451-7587470 None:intergenic 70.0%
TGACGGCGGAGCCGATGGGA+AGG - chr2_3:7587456-7587475 None:intergenic 70.0%
! GAGGTGACGGCGGAGCCGAT+GGG - chr2_3:7587460-7587479 None:intergenic 70.0%
! AGAGGTGACGGCGGAGCCGA+TGG - chr2_3:7587461-7587480 None:intergenic 70.0%
GCAGGGATGGTCGGAGACGG+CGG - chr2_3:7587573-7587592 None:intergenic 70.0%
GGCGCAGGGATGGTCGGAGA+CGG - chr2_3:7587576-7587595 None:intergenic 70.0%
GAATGGCAGCGGCGCAGGGA+TGG - chr2_3:7587586-7587605 None:intergenic 70.0%
GGATGGTCGGAGACGGCGGC+GGG - chr2_3:7587569-7587588 None:intergenic 75.0%
GGGATGGTCGGAGACGGCGG+CGG - chr2_3:7587570-7587589 None:intergenic 75.0%
GGCAGCGGCGCAGGGATGGT+CGG - chr2_3:7587582-7587601 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 7587014 7590424 7587014 ID=Msa0275530;Name=Msa0275530
chr2_3 mRNA 7587014 7590424 7587014 ID=Msa0275530-mRNA-1;Parent=Msa0275530;Name=Msa0275530-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.75|1|1|4|0|820
chr2_3 exon 7587014 7587021 7587014 ID=Msa0275530-mRNA-1:exon:3484;Parent=Msa0275530-mRNA-1
chr2_3 exon 7587409 7587617 7587409 ID=Msa0275530-mRNA-1:exon:3485;Parent=Msa0275530-mRNA-1
chr2_3 exon 7588088 7590252 7588088 ID=Msa0275530-mRNA-1:exon:3486;Parent=Msa0275530-mRNA-1
chr2_3 exon 7590344 7590424 7590344 ID=Msa0275530-mRNA-1:exon:3487;Parent=Msa0275530-mRNA-1
chr2_3 CDS 7587014 7587021 7587014 ID=Msa0275530-mRNA-1:cds;Parent=Msa0275530-mRNA-1
chr2_3 CDS 7587409 7587617 7587409 ID=Msa0275530-mRNA-1:cds;Parent=Msa0275530-mRNA-1
chr2_3 CDS 7588088 7590252 7588088 ID=Msa0275530-mRNA-1:cds;Parent=Msa0275530-mRNA-1
chr2_3 CDS 7590344 7590424 7590344 ID=Msa0275530-mRNA-1:cds;Parent=Msa0275530-mRNA-1
Gene Sequence

>Msa0275530

ATGAAAAAAAAACTTTCCACCTTCCTCCCCCATAATCATCGAAGCCACCTCTCCTTCCCATCGGCTCCGCCGTCACCTCTCCTTCTCTCTCGCCGCTGCACCTCTCTCTTGGCCTCCGTCAACGTCATGAGCGAACCCCATCATCCTGCTACCAACACTAACGAACCCGCCGCCGTCTCCGACCATCCCTGCGCCGCTGCCATTCTTGTTGATCAAGATTGTGTCAATAAATTGGTTAACAACATTCATGAACAAAATGTGCAACACGGACAAGGAAGTATTGCCAACAATTTACCTCACTTGGAAATGAAGTTTGATTCTGAGGCAGCGGCTTATGACTTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAGTTGATGGAGTTTTGACTTCAAGAAGATTCACATGCTACAAAGAGGGTGTACGAGGTGTTGACAAAAGACGTCAACCAAAAGGGGAGCCTAGAGCAGAAATTAGAACAGGATGTTTGGCGCGTATGGTTATTTCACTCGATCGGAAGATAGAGAAATATAAAGTTGTTGACTTTATAGCTGAACATAACCACCAACTTCAACCTGAGCATGTTCATATGATTTGCTCTCATCGACGCATATCTGAGACACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGATTAAGACCAAAAGATTTGCATGAATATATATCCAAGCAAGCTGGTGGAATACAGACAGTTGGTTTTACAAAAAAAGACCTTACGAATTACCTTGAAACCAAAAGGAAACAGTCACTAAAGTATGGTGAGGTGGGTGCATTGATGATGTATTTCAAAAAAGAAAGTGAAAATCCCTCGTTCTATTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCGGATGCACAAATGATAAATGATTATGGGTATTTTGGTGATGTTATTACTTTTGACACCACATACAAGACAAATAAGGGTTATCGGCCGCTGGGAGTATTTGTTGGACTAAATAATCACAGGCAAACAGTCATTTTTGGTGCAGCATTGTTATATGACGAAACAATCCCTTCTTTCAAGTGGTTATTTGAAACATTTCTCAAGGCAATGGGTGGTAAAAAGCCAAAAACCATTTTGACGGATCAAGACACTGCGATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTTTACGGCATGTGAACCACTTATATCAAAAGAGTTCACAATTCGGTTTGGATTTTGAAGCATTGATAGATGTACATGAAGATGAGGGTGAATTTTTGAATGCTTGGAATTCTTTACTTGTTGAGCATAATATATTGGAAGGGTCGTGGTTGCATACAATTTATCAATTGAAGGAAAAATGGGCATGGACATATGTCCGGAAAACATTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAGAACCATTTGAAGTCTGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGAGCTGTTAATGGTAAACGAAACAAAGAGTCAGAAGCTGAATATGAGTCAAAACATAAGCTGCCTAGATTGAAAATGAAGAAGGCTCGTATGCTCATACAAGCTGCAAATGTTTACACTCCTAGAATATTTGAGGAGTTCCAAGAGGAATATGAAGAATATCAAGACACTTGCGTAAAAGATTTGAAAGAAGGTTTGTATGCTGTCACAAACTATGATAATCCAACGGAGAGGATAGTTATGGGAAATGCTATGGAACAAAAAGTTTCATGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCTGAAACCTATATACTGAAGCGATGGACAAGAAATGCAAGGTTGGGAAGTGATCAAGATTGGAAAGGGAGGCATGTTGAATTAGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTAACCAACAAAGCTTCAGAAACTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAATTGATGATATGTTGGCCAAAAAGTATGTGGATGGAGAATCAGAGGGCATGGTTCATGTATCCATATCAATTGCAAATGATGAAATTGACAATGTGGACACCGTTGGTATGGCAAAAGGCATAGCTAATCGAGAAAGTTCACGCAAGCGGAAAAAGCGATATAAATCTTGGATTGAGAAAAAAGATAAAAAGACAAAGATGTGCTCCAAGAGAAAGAGATCTGGTGAAAATTTAGTACAGTCGTTACCGCAAGAAACTACAGTTCAAGCGACACAATCAAGTCAAGTTGGCAATGGAACTCAACATCAAGCTACAATCCAAGAGTCATAA
Protein sequence

>Msa0275530

MKKKLSTFLPHNHRSHLSFPSAPPSPLLLSRRCTSLLASVNVMSEPHHPATNTNEPAAVSDHPCAAAILVDQDCVNKLVNNIHEQNVQHGQGSIANNLPHLEMKFDSEAAAYDFYNEYSKRIGFGIRREYGNKSRVDGVLTSRRFTCYKEGVRGVDKRRQPKGEPRAEIRTGCLARMVISLDRKIEKYKVVDFIAEHNHQLQPEHVHMICSHRRISETQASQIVLGDESGLRPKDLHEYISKQAGGIQTVGFTKKDLTNYLETKRKQSLKYGEVGALMMYFKKESENPSFYYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKGYRPLGVFVGLNNHRQTVIFGAALLYDETIPSFKWLFETFLKAMGGKKPKTILTDQDTAMAKAISLVMPETFHGLCTWHIRQNALRHVNHLYQKSSQFGLDFEALIDVHEDEGEFLNAWNSLLVEHNILEGSWLHTIYQLKEKWAWTYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFKRAVNGKRNKESEAEYESKHKLPRLKMKKARMLIQAANVYTPRIFEEFQEEYEEYQDTCVKDLKEGLYAVTNYDNPTERIVMGNAMEQKVSCDCRKFETHGILCSHALKVLDVMNIKLIPETYILKRWTRNARLGSDQDWKGRHVELDIKAHFMKRYNELCPRMVKLTNKASETHETYTFLSKVYEESSKIIDDMLAKKYVDGESEGMVHVSISIANDEIDNVDTVGMAKGIANRESSRKRKKRYKSWIEKKDKKTKMCSKRKRSGENLVQSLPQETTVQATQSSQVGNGTQHQATIQES*