Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275990 | XP_024636348.1 | 91.775 | 693 | 29 | 1 | 1 | 665 | 1 | 693 | 0.0 | 1321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275990 | sp|Q9SZL8|FRS5_ARATH | 34.783 | 529 | 310 | 9 | 62 | 557 | 117 | 643 | 9.12e-101 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0275990 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275990 | MtrunA17_Chr8g0363841 | 68.899 | 672 | 179 | 2 | 1 | 644 | 1 | 670 | 0.0 | 960 |
| Msa0275990 | MtrunA17_Chr1g0202341 | 32.612 | 647 | 381 | 14 | 20 | 632 | 54 | 679 | 7.55e-107 | 338 |
| Msa0275990 | MtrunA17_Chr2g0324011 | 32.302 | 582 | 347 | 10 | 19 | 563 | 12 | 583 | 8.66e-101 | 320 |
| Msa0275990 | MtrunA17_Chr5g0448761 | 31.544 | 596 | 363 | 12 | 62 | 621 | 104 | 690 | 1.45e-98 | 320 |
| Msa0275990 | MtrunA17_Chr3g0082121 | 34.426 | 549 | 319 | 11 | 29 | 549 | 55 | 590 | 2.25e-97 | 314 |
| Msa0275990 | MtrunA17_Chr6g0458391 | 30.940 | 585 | 337 | 12 | 1 | 549 | 212 | 765 | 1.87e-90 | 298 |
| Msa0275990 | MtrunA17_Chr2g0287651 | 31.418 | 557 | 339 | 8 | 27 | 549 | 85 | 632 | 2.69e-89 | 297 |
| Msa0275990 | MtrunA17_Chr2g0296781 | 32.998 | 497 | 296 | 6 | 87 | 549 | 63 | 556 | 9.89e-84 | 279 |
| Msa0275990 | MtrunA17_Chr5g0440451 | 28.899 | 654 | 384 | 16 | 18 | 624 | 44 | 663 | 1.00e-83 | 283 |
| Msa0275990 | MtrunA17_Chr1g0207551 | 30.935 | 556 | 341 | 8 | 27 | 549 | 44 | 589 | 4.50e-82 | 276 |
| Msa0275990 | MtrunA17_Chr1g0203721 | 30.877 | 570 | 344 | 11 | 19 | 549 | 65 | 623 | 1.16e-81 | 276 |
| Msa0275990 | MtrunA17_Chr2g0329031 | 30.490 | 551 | 344 | 9 | 27 | 550 | 24 | 562 | 3.24e-81 | 272 |
| Msa0275990 | MtrunA17_Chr5g0441581 | 29.310 | 580 | 365 | 7 | 1 | 549 | 18 | 583 | 5.18e-80 | 268 |
| Msa0275990 | MtrunA17_Chr6g0477261 | 33.257 | 436 | 255 | 5 | 148 | 549 | 12 | 445 | 1.70e-77 | 260 |
| Msa0275990 | MtrunA17_Chr1g0203051 | 28.913 | 543 | 347 | 9 | 25 | 536 | 87 | 621 | 6.53e-76 | 256 |
| Msa0275990 | MtrunA17_Chr1g0198761 | 27.874 | 696 | 431 | 19 | 17 | 670 | 47 | 713 | 4.55e-72 | 248 |
| Msa0275990 | MtrunA17_Chr2g0287061 | 28.381 | 599 | 343 | 13 | 7 | 569 | 173 | 721 | 6.37e-72 | 248 |
| Msa0275990 | MtrunA17_Chr2g0276841 | 28.209 | 631 | 404 | 13 | 18 | 617 | 71 | 683 | 1.20e-70 | 243 |
| Msa0275990 | MtrunA17_Chr1g0164591 | 38.511 | 309 | 180 | 3 | 101 | 408 | 8 | 307 | 1.01e-67 | 224 |
| Msa0275990 | MtrunA17_Chr5g0448511 | 31.951 | 410 | 245 | 6 | 189 | 565 | 10 | 418 | 1.01e-67 | 231 |
| Msa0275990 | MtrunA17_Chr3g0080351 | 27.730 | 577 | 338 | 11 | 20 | 549 | 79 | 623 | 4.23e-67 | 236 |
| Msa0275990 | MtrunA17_Chr3g0118611 | 31.783 | 387 | 235 | 4 | 191 | 550 | 118 | 502 | 1.33e-66 | 233 |
| Msa0275990 | MtrunA17_Chr2g0291591 | 30.524 | 439 | 292 | 6 | 27 | 461 | 74 | 503 | 7.76e-66 | 227 |
| Msa0275990 | MtrunA17_Chr1g0196541 | 28.398 | 493 | 318 | 5 | 87 | 546 | 63 | 553 | 4.81e-63 | 223 |
| Msa0275990 | MtrunA17_Chr2g0291581 | 25.797 | 659 | 417 | 12 | 5 | 617 | 49 | 681 | 3.50e-62 | 219 |
| Msa0275990 | MtrunA17_Chr2g0290391 | 28.351 | 582 | 368 | 14 | 18 | 559 | 52 | 624 | 2.56e-60 | 214 |
| Msa0275990 | MtrunA17_Chr2g0294841 | 27.301 | 641 | 400 | 17 | 18 | 616 | 46 | 662 | 6.55e-59 | 211 |
| Msa0275990 | MtrunA17_Chr5g0431001 | 31.206 | 423 | 264 | 9 | 18 | 421 | 62 | 476 | 1.20e-54 | 194 |
| Msa0275990 | MtrunA17_Chr7g0258861 | 34.722 | 288 | 176 | 5 | 19 | 299 | 12 | 294 | 2.97e-46 | 166 |
| Msa0275990 | MtrunA17_Chr1g0149131 | 37.500 | 112 | 69 | 1 | 296 | 406 | 1 | 112 | 5.37e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275990 | AT4G38180.1 | 34.783 | 529 | 310 | 9 | 62 | 557 | 117 | 643 | 9.27e-102 | 328 |
| Msa0275990 | AT4G15090.1 | 31.984 | 494 | 304 | 7 | 88 | 552 | 122 | 612 | 3.41e-81 | 275 |
| Msa0275990 | AT4G15090.5 | 31.984 | 494 | 304 | 7 | 88 | 552 | 122 | 612 | 3.41e-81 | 275 |
| Msa0275990 | AT4G15090.3 | 31.984 | 494 | 304 | 7 | 88 | 552 | 122 | 612 | 3.41e-81 | 275 |
| Msa0275990 | AT4G15090.2 | 31.984 | 494 | 304 | 7 | 88 | 552 | 122 | 612 | 3.41e-81 | 275 |
| Msa0275990 | AT4G15090.4 | 31.984 | 494 | 304 | 7 | 88 | 552 | 122 | 612 | 3.41e-81 | 275 |
| Msa0275990 | AT2G27110.2 | 31.151 | 504 | 304 | 7 | 90 | 564 | 107 | 596 | 7.38e-81 | 274 |
| Msa0275990 | AT2G27110.1 | 31.151 | 504 | 304 | 7 | 90 | 564 | 107 | 596 | 7.38e-81 | 274 |
| Msa0275990 | AT1G76320.3 | 30.545 | 550 | 343 | 9 | 27 | 549 | 7 | 544 | 6.63e-75 | 254 |
| Msa0275990 | AT1G76320.1 | 30.545 | 550 | 343 | 9 | 27 | 549 | 7 | 544 | 1.88e-74 | 254 |
| Msa0275990 | AT1G76320.4 | 30.545 | 550 | 343 | 9 | 27 | 549 | 7 | 544 | 1.88e-74 | 254 |
| Msa0275990 | AT1G76320.2 | 30.545 | 550 | 343 | 9 | 27 | 549 | 7 | 544 | 2.36e-74 | 254 |
| Msa0275990 | AT2G27110.3 | 32.506 | 403 | 241 | 5 | 191 | 564 | 51 | 451 | 2.16e-72 | 248 |
| Msa0275990 | AT3G06250.2 | 28.853 | 558 | 325 | 9 | 18 | 548 | 191 | 703 | 2.31e-69 | 241 |
| Msa0275990 | AT3G06250.1 | 28.853 | 558 | 325 | 9 | 18 | 548 | 191 | 703 | 2.31e-69 | 241 |
| Msa0275990 | AT3G06250.3 | 28.853 | 558 | 325 | 9 | 18 | 548 | 191 | 703 | 2.31e-69 | 241 |
| Msa0275990 | AT3G22170.2 | 27.979 | 579 | 337 | 11 | 20 | 550 | 73 | 619 | 1.09e-67 | 238 |
| Msa0275990 | AT3G22170.1 | 27.979 | 579 | 337 | 11 | 20 | 550 | 73 | 619 | 1.09e-67 | 238 |
| Msa0275990 | AT1G10240.2 | 28.197 | 649 | 418 | 14 | 18 | 635 | 49 | 680 | 2.68e-66 | 231 |
| Msa0275990 | AT1G10240.1 | 28.197 | 649 | 418 | 14 | 18 | 635 | 49 | 680 | 2.68e-66 | 231 |
| Msa0275990 | AT4G19990.3 | 27.454 | 601 | 344 | 14 | 1 | 550 | 1 | 560 | 1.06e-63 | 225 |
| Msa0275990 | AT4G19990.4 | 27.454 | 601 | 344 | 14 | 1 | 550 | 1 | 560 | 1.06e-63 | 225 |
| Msa0275990 | AT4G19990.5 | 27.454 | 601 | 344 | 15 | 1 | 550 | 1 | 560 | 1.15e-63 | 225 |
| Msa0275990 | AT4G19990.6 | 27.454 | 601 | 344 | 15 | 1 | 550 | 1 | 560 | 2.77e-63 | 224 |
| Msa0275990 | AT4G19990.2 | 27.454 | 601 | 344 | 15 | 1 | 550 | 1 | 560 | 2.77e-63 | 224 |
| Msa0275990 | AT4G19990.7 | 27.471 | 597 | 341 | 15 | 5 | 550 | 19 | 574 | 4.13e-63 | 224 |
| Msa0275990 | AT4G19990.1 | 29.234 | 496 | 286 | 9 | 84 | 550 | 44 | 503 | 8.19e-62 | 219 |
| Msa0275990 | AT5G28530.3 | 27.041 | 588 | 387 | 11 | 18 | 569 | 56 | 637 | 2.34e-61 | 217 |
| Msa0275990 | AT5G28530.2 | 27.041 | 588 | 387 | 11 | 18 | 569 | 56 | 637 | 2.34e-61 | 217 |
| Msa0275990 | AT5G18960.2 | 28.265 | 559 | 330 | 12 | 18 | 548 | 212 | 727 | 2.77e-60 | 216 |
| Msa0275990 | AT5G18960.1 | 28.265 | 559 | 330 | 12 | 18 | 548 | 212 | 727 | 2.77e-60 | 216 |
| Msa0275990 | AT5G28530.1 | 26.858 | 592 | 387 | 12 | 18 | 569 | 56 | 641 | 8.40e-60 | 213 |
| Msa0275990 | AT1G52520.1 | 26.190 | 630 | 403 | 13 | 19 | 609 | 87 | 693 | 6.43e-59 | 211 |
| Msa0275990 | AT4G38170.1 | 26.940 | 464 | 296 | 9 | 181 | 615 | 7 | 456 | 8.20e-58 | 204 |
| Msa0275990 | AT2G32250.7 | 27.778 | 450 | 272 | 7 | 203 | 620 | 140 | 568 | 5.43e-56 | 204 |
| Msa0275990 | AT2G32250.5 | 27.778 | 450 | 272 | 7 | 203 | 620 | 181 | 609 | 7.02e-56 | 203 |
| Msa0275990 | AT2G32250.8 | 27.778 | 450 | 272 | 7 | 203 | 620 | 140 | 568 | 7.11e-56 | 203 |
| Msa0275990 | AT2G32250.2 | 27.778 | 450 | 272 | 7 | 203 | 620 | 181 | 609 | 1.13e-55 | 203 |
| Msa0275990 | AT2G32250.4 | 27.778 | 450 | 272 | 7 | 203 | 620 | 181 | 609 | 1.13e-55 | 203 |
| Msa0275990 | AT2G32250.6 | 27.778 | 450 | 272 | 7 | 203 | 620 | 181 | 609 | 1.18e-55 | 203 |
| Msa0275990 | AT2G32250.1 | 27.778 | 450 | 272 | 7 | 203 | 620 | 181 | 609 | 1.18e-55 | 203 |
| Msa0275990 | AT2G32250.3 | 27.778 | 450 | 272 | 7 | 203 | 620 | 181 | 609 | 1.18e-55 | 203 |
| Msa0275990 | AT1G80010.1 | 26.271 | 590 | 353 | 13 | 20 | 551 | 98 | 663 | 9.71e-53 | 194 |
| Msa0275990 | AT5G28530.5 | 23.875 | 578 | 355 | 15 | 18 | 569 | 56 | 574 | 3.90e-38 | 150 |
| Msa0275990 | AT5G28530.4 | 23.711 | 582 | 355 | 16 | 18 | 569 | 56 | 578 | 1.11e-36 | 146 |
Find 103 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATATTTGGAATTATTT+AGG | 0.090273 | 2_3:+8150441 | Msa0275990:CDS |
| GTATACGAGTTACAAATATT+TGG | 0.231098 | 2_3:+8150430 | Msa0275990:CDS |
| CACAGTCGATGACGTGTATT+TGG | 0.232099 | 2_3:-8150948 | None:intergenic |
| TTGCGGATTTACAATATTAA+AGG | 0.235308 | 2_3:+8151642 | Msa0275990:CDS |
| CAAATATTTGGAATTATTTA+GGG | 0.245589 | 2_3:+8150442 | Msa0275990:CDS |
| CTCGTTTGACTAATGTCTTT+TGG | 0.253639 | 2_3:+8150643 | Msa0275990:CDS |
| TTGTCACAAGTTCGAATCTA+TGG | 0.257274 | 2_3:+8151599 | Msa0275990:CDS |
| TTTGGACTCATCCACTTCTA+TGG | 0.267599 | 2_3:+8151566 | Msa0275990:CDS |
| ACAAATCATGTCATACTTAT+TGG | 0.278809 | 2_3:-8150736 | None:intergenic |
| GTCTTTATACAATTTAGTTT+TGG | 0.305862 | 2_3:+8151827 | Msa0275990:CDS |
| AAGTTGATTATGATTGCTTT+GGG | 0.313658 | 2_3:+8150682 | Msa0275990:CDS |
| CCAATTGCTTTGCCCATAGC+TGG | 0.340351 | 2_3:-8150915 | None:intergenic |
| AAAGTTGATTATGATTGCTT+TGG | 0.341170 | 2_3:+8150681 | Msa0275990:CDS |
| GAGAGTACAAATAGTGCTTT+AGG | 0.346074 | 2_3:+8151230 | Msa0275990:CDS |
| ATGTTAGCAAGGAAGGAGTT+TGG | 0.356508 | 2_3:+8150280 | Msa0275990:CDS |
| ATGTGGGAATTGCTTGATAT+TGG | 0.360003 | 2_3:+8151882 | Msa0275990:CDS |
| AACATCTTGTTAAGATGTAT+TGG | 0.361271 | 2_3:-8151683 | None:intergenic |
| GGGTTTAAGAATAATGAATA+TGG | 0.371754 | 2_3:+8150195 | Msa0275990:CDS |
| GTTTGGTTGTGCTTTGTTGT+TGG | 0.381326 | 2_3:+8150800 | Msa0275990:CDS |
| ACGGGACCTCATAAAGTCTA+TGG | 0.389034 | 2_3:+8150398 | Msa0275990:CDS |
| AACAGTAAAACTCTTTAAAA+CGG | 0.389800 | 2_3:-8150164 | None:intergenic |
| GAAAAGGTGGCGACAATTAG+AGG | 0.395021 | 2_3:+8151313 | Msa0275990:CDS |
| ATGAATACATATCAACTTCA+TGG | 0.400065 | 2_3:+8151107 | Msa0275990:CDS |
| CATTGGCAAAATGTCATGTT+TGG | 0.404780 | 2_3:+8150783 | Msa0275990:CDS |
| TTTAGTGGCATTTGAGAAGA+TGG | 0.409481 | 2_3:+8151289 | Msa0275990:CDS |
| TGATGATTTATCCCAACAAA+TGG | 0.412657 | 2_3:-8150762 | None:intergenic |
| ATGATTTGTGCCCCATTTGT+TGG | 0.413670 | 2_3:+8150750 | Msa0275990:CDS |
| ATGTCTGATGGTGATGATTC+CGG | 0.413874 | 2_3:+8151777 | Msa0275990:CDS |
| ATCACCATCAGACATTGAAT+TGG | 0.421110 | 2_3:-8151769 | None:intergenic |
| GATGATTTATCCCAACAAAT+GGG | 0.422996 | 2_3:-8150761 | None:intergenic |
| CCAGCTATGGGCAAAGCAAT+TGG | 0.423236 | 2_3:+8150915 | Msa0275990:CDS |
| TTCTTTGCAGTCATGCTTTG+CGG | 0.424200 | 2_3:+8151625 | Msa0275990:CDS |
| CAAGATTTAGTGTAAGAAAA+GGG | 0.432600 | 2_3:+8150106 | Msa0275990:CDS |
| AAGTTGAAATTGATTGAAGC+TGG | 0.434164 | 2_3:+8150534 | Msa0275990:CDS |
| TGTCAATCAGTTGAAATTGA+TGG | 0.438803 | 2_3:+8150003 | Msa0275990:CDS |
| ACAAGATTTAGTGTAAGAAA+AGG | 0.440176 | 2_3:+8150105 | Msa0275990:CDS |
| AATTCACCATAGACTTTATG+AGG | 0.446268 | 2_3:-8150404 | None:intergenic |
| TTGTTGGGATAAATCATCAT+TGG | 0.449540 | 2_3:+8150766 | Msa0275990:CDS |
| ACAGTAAAACTCTTTAAAAC+GGG | 0.452807 | 2_3:-8150163 | None:intergenic |
| GACATTTGACATATTTCTCA+TGG | 0.454279 | 2_3:-8150373 | None:intergenic |
| TCTTCAGTTGAATTTAAGTC+AGG | 0.456298 | 2_3:-8151936 | None:intergenic |
| TGATTTGTGCCCCATTTGTT+GGG | 0.458508 | 2_3:+8150751 | Msa0275990:CDS |
| AAATATGTCAAATGTCAAAC+GGG | 0.464386 | 2_3:+8150380 | Msa0275990:CDS |
| AGTTGAAATTGATTGAAGCT+GGG | 0.466350 | 2_3:+8150535 | Msa0275990:CDS |
| TGCTTGATATTGGAGTTAAG+AGG | 0.468751 | 2_3:+8151892 | Msa0275990:CDS |
| CACGTCATCGACTGTGTTTG+TGG | 0.470840 | 2_3:+8150955 | Msa0275990:CDS |
| TGTATGCAATTCGCATCAAA+TGG | 0.474587 | 2_3:+8151150 | Msa0275990:CDS |
| GTCGGTGGATATAACAATCT+TGG | 0.477476 | 2_3:+8150471 | Msa0275990:CDS |
| CTTATGAAAGAGCTGATTCA+AGG | 0.480001 | 2_3:+8150229 | Msa0275990:CDS |
| CGCAACAAATGTCTTTGCTC+AGG | 0.482031 | 2_3:-8150348 | None:intergenic |
| CTTGTTAAGATGTATTGGTC+AGG | 0.483267 | 2_3:-8151678 | None:intergenic |
| TTGGAATTATTTAGGGGAAG+AGG | 0.485109 | 2_3:+8150449 | Msa0275990:CDS |
| GGAAGCACTTCCGTGGAGAT+TGG | 0.486127 | 2_3:+8151474 | Msa0275990:CDS |
| GAAATATGTCAAATGTCAAA+CGG | 0.486335 | 2_3:+8150379 | Msa0275990:CDS |
| GAACAATTTCTCACAAAATG+AGG | 0.486915 | 2_3:+8151968 | Msa0275990:CDS |
| TTACAGTGTGCAGCTAGATC+AGG | 0.487131 | 2_3:+8150617 | Msa0275990:CDS |
| TTATTTAATAAATGCATGAC+GGG | 0.492541 | 2_3:+8151041 | Msa0275990:CDS |
| CCTTTCGTCTTTGCGAAACG+AGG | 0.494573 | 2_3:-8152017 | None:intergenic |
| ATCAACTTCATGGTCACAAA+TGG | 0.496700 | 2_3:+8151117 | Msa0275990:CDS |
| AGTGCTTTAGGAGATATTGC+AGG | 0.515773 | 2_3:+8151242 | Msa0275990:CDS |
| ACCATCAGACATTGAATTGG+AGG | 0.525549 | 2_3:-8151766 | None:intergenic |
| CTTATTTAATAAATGCATGA+CGG | 0.534565 | 2_3:+8151040 | Msa0275990:CDS |
| AGGATTAATGTTAGCAAGGA+AGG | 0.537424 | 2_3:+8150273 | Msa0275990:CDS |
| GCTTGATATTGGAGTTAAGA+GGG | 0.539861 | 2_3:+8151893 | Msa0275990:CDS |
| TACAGATCAAGATCCAGCTA+TGG | 0.541076 | 2_3:+8150902 | Msa0275990:CDS |
| AAGGACAAATTGCAAAGCTA+TGG | 0.542290 | 2_3:+8150248 | Msa0275990:CDS |
| AGGTCTAGTGTTCGCCAGAA+AGG | 0.542291 | 2_3:+8152041 | Msa0275990:CDS |
| AAGAAGAAATTCAAACCACT+TGG | 0.543532 | 2_3:+8151075 | Msa0275990:CDS |
| ACTGCAACTAACCATAGAAG+TGG | 0.557438 | 2_3:-8151577 | None:intergenic |
| CCTCGTTTCGCAAAGACGAA+AGG | 0.559981 | 2_3:+8152017 | Msa0275990:CDS |
| ATTATGATCTAATACAAACT+TGG | 0.563904 | 2_3:-8150310 | None:intergenic |
| AGCGTTGCGGTAAAGAAGAC+CGG | 0.568368 | 2_3:-8151796 | None:intergenic |
| ACCTCCAATTCAATGTCTGA+TGG | 0.568696 | 2_3:+8151765 | Msa0275990:CDS |
| ATTTAGTGTAAGAAAAGGGA+GGG | 0.568911 | 2_3:+8150110 | Msa0275990:CDS |
| TGTCACAAGTTCGAATCTAT+GGG | 0.570742 | 2_3:+8151600 | Msa0275990:CDS |
| TAATGAATATGGAGGTGAAG+TGG | 0.572461 | 2_3:+8150206 | Msa0275990:CDS |
| ACAGATCAAGATCCAGCTAT+GGG | 0.572544 | 2_3:+8150903 | Msa0275990:CDS |
| GATTTAGTGTAAGAAAAGGG+AGG | 0.580368 | 2_3:+8150109 | Msa0275990:CDS |
| TATTTAGGGGAAGAGGTCGG+TGG | 0.586341 | 2_3:+8150456 | Msa0275990:CDS |
| GGCGAGGATTAATGTTAGCA+AGG | 0.589254 | 2_3:+8150269 | Msa0275990:CDS |
| GGCAGGTGGAAGCACTTCCG+TGG | 0.590405 | 2_3:+8151467 | Msa0275990:intron |
| ATAAAGTCTATGGTGAATTG+TGG | 0.590947 | 2_3:+8150408 | Msa0275990:CDS |
| AATTATTTAGGGGAAGAGGT+CGG | 0.592715 | 2_3:+8150453 | Msa0275990:CDS |
| GTTGAAATTGATTGAAGCTG+GGG | 0.593382 | 2_3:+8150536 | Msa0275990:CDS |
| CATTTGAGAAGATGGTGAAA+AGG | 0.603784 | 2_3:+8151297 | Msa0275990:CDS |
| TTTAAGAATAATGAATATGG+AGG | 0.604513 | 2_3:+8150198 | Msa0275990:CDS |
| TTGAGAGATCCCAAATGTGA+AGG | 0.607518 | 2_3:-8150996 | None:intergenic |
| CTGAGCAAAGACATTTGTTG+CGG | 0.611498 | 2_3:+8150349 | Msa0275990:CDS |
| TTGAGAAGATGGTGAAAAGG+TGG | 0.621585 | 2_3:+8151300 | Msa0275990:CDS |
| AGAAGAAATTCAAACCACTT+GGG | 0.623929 | 2_3:+8151076 | Msa0275990:CDS |
| AAATATTTGGAATTATTTAG+GGG | 0.632966 | 2_3:+8150443 | Msa0275990:CDS |
| ATGATTTATCCCAACAAATG+GGG | 0.633354 | 2_3:-8150760 | None:intergenic |
| GTTTCGCAAAGACGAAAGGA+AGG | 0.636971 | 2_3:+8152021 | Msa0275990:CDS |
| TCACTACTGTTTATAACACG+AGG | 0.639447 | 2_3:-8151371 | None:intergenic |
| AACAAATGTCTTTGCTCAGG+AGG | 0.641459 | 2_3:-8150345 | None:intergenic |
| TGCACACTGTAATAGAACAT+AGG | 0.647292 | 2_3:-8150606 | None:intergenic |
| CAAATTGCAAAGCTATGGCG+AGG | 0.653878 | 2_3:+8150253 | Msa0275990:CDS |
| ATTCATCATCTCATCCCAAG+TGG | 0.657667 | 2_3:-8151090 | None:intergenic |
| ATCACATCGACCAATCTCCA+CGG | 0.672242 | 2_3:-8151484 | None:intergenic |
| CTACTGTTTATAACACGAGG+AGG | 0.687262 | 2_3:-8151368 | None:intergenic |
| CTGGTATCAAATCTTCTCAG+AGG | 0.692726 | 2_3:+8151204 | Msa0275990:CDS |
| AAGACTTCAGAATAGCGTTG+CGG | 0.703840 | 2_3:-8151809 | None:intergenic |
| AGTTGATTATGATTGCTTTG+GGG | 0.716100 | 2_3:+8150683 | Msa0275990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATTTGGAATTATTT+AGG | + | chr2_3:8150441-8150460 | Msa0275990:CDS | 15.0% |
| !!! | CAAATATTTGGAATTATTTA+GGG | + | chr2_3:8150442-8150461 | Msa0275990:CDS | 15.0% |
| !!! | AAATATTTGGAATTATTTAG+GGG | + | chr2_3:8150443-8150462 | Msa0275990:CDS | 15.0% |
| !!! | AAACTTCAATTTCTTTTAAT+TGG | + | chr2_3:8150826-8150845 | Msa0275990:CDS | 15.0% |
| !!! | TTTTTAAATGAGTATCTTAA+TGG | + | chr2_3:8151444-8151463 | Msa0275990:intron | 15.0% |
| !!! | TTTTAAATGAGTATCTTAAT+GGG | + | chr2_3:8151445-8151464 | Msa0275990:intron | 15.0% |
| !!! | ACAAATATTTGGAATTATTT+AGG | + | chr2_3:8150441-8150460 | Msa0275990:CDS | 15.0% |
| !!! | CAAATATTTGGAATTATTTA+GGG | + | chr2_3:8150442-8150461 | Msa0275990:CDS | 15.0% |
| !!! | AAATATTTGGAATTATTTAG+GGG | + | chr2_3:8150443-8150462 | Msa0275990:CDS | 15.0% |
| !!! | AAACTTCAATTTCTTTTAAT+TGG | + | chr2_3:8150826-8150845 | Msa0275990:CDS | 15.0% |
| !!! | TTTTTAAATGAGTATCTTAA+TGG | + | chr2_3:8151444-8151463 | Msa0275990:intron | 15.0% |
| !!! | TTTTAAATGAGTATCTTAAT+GGG | + | chr2_3:8151445-8151464 | Msa0275990:intron | 15.0% |
| !!! | AACAGTAAAACTCTTTAAAA+CGG | - | chr2_3:8150167-8150186 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATATGG+AGG | + | chr2_3:8150198-8150217 | Msa0275990:CDS | 20.0% |
| !! | ATTATGATCTAATACAAACT+TGG | - | chr2_3:8150313-8150332 | None:intergenic | 20.0% |
| !!! | TGATCTGTAAATATTGTTTT+TGG | - | chr2_3:8150891-8150910 | None:intergenic | 20.0% |
| !! | CTTATTTAATAAATGCATGA+CGG | + | chr2_3:8151040-8151059 | Msa0275990:CDS | 20.0% |
| !! | TTATTTAATAAATGCATGAC+GGG | + | chr2_3:8151041-8151060 | Msa0275990:CDS | 20.0% |
| !! | TTTAAATGAGTATCTTAATG+GGG | + | chr2_3:8151446-8151465 | Msa0275990:intron | 20.0% |
| !!! | GTCTTTATACAATTTAGTTT+TGG | + | chr2_3:8151827-8151846 | Msa0275990:CDS | 20.0% |
| !!! | AACAGTAAAACTCTTTAAAA+CGG | - | chr2_3:8150167-8150186 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATATGG+AGG | + | chr2_3:8150198-8150217 | Msa0275990:CDS | 20.0% |
| !! | ATTATGATCTAATACAAACT+TGG | - | chr2_3:8150313-8150332 | None:intergenic | 20.0% |
| !!! | TGATCTGTAAATATTGTTTT+TGG | - | chr2_3:8150891-8150910 | None:intergenic | 20.0% |
| !! | CTTATTTAATAAATGCATGA+CGG | + | chr2_3:8151040-8151059 | Msa0275990:CDS | 20.0% |
| !! | TTATTTAATAAATGCATGAC+GGG | + | chr2_3:8151041-8151060 | Msa0275990:CDS | 20.0% |
| !! | TTTAAATGAGTATCTTAATG+GGG | + | chr2_3:8151446-8151465 | Msa0275990:intron | 20.0% |
| !!! | GTCTTTATACAATTTAGTTT+TGG | + | chr2_3:8151827-8151846 | Msa0275990:CDS | 20.0% |
| !!! | TACACTAAATCTTGTTTTGA+AGG | - | chr2_3:8150100-8150119 | None:intergenic | 25.0% |
| ! | ACAAGATTTAGTGTAAGAAA+AGG | + | chr2_3:8150105-8150124 | Msa0275990:CDS | 25.0% |
| ! | CAAGATTTAGTGTAAGAAAA+GGG | + | chr2_3:8150106-8150125 | Msa0275990:CDS | 25.0% |
| !!! | ACAGTAAAACTCTTTAAAAC+GGG | - | chr2_3:8150166-8150185 | None:intergenic | 25.0% |
| !! | AGTTTTACTGTTTCAAAGAA+GGG | + | chr2_3:8150175-8150194 | Msa0275990:CDS | 25.0% |
| ! | GGGTTTAAGAATAATGAATA+TGG | + | chr2_3:8150195-8150214 | Msa0275990:CDS | 25.0% |
| ! | GAAATATGTCAAATGTCAAA+CGG | + | chr2_3:8150379-8150398 | Msa0275990:CDS | 25.0% |
| ! | AAATATGTCAAATGTCAAAC+GGG | + | chr2_3:8150380-8150399 | Msa0275990:CDS | 25.0% |
| ! | GTATACGAGTTACAAATATT+TGG | + | chr2_3:8150430-8150449 | Msa0275990:CDS | 25.0% |
| !! | AAAGTTGATTATGATTGCTT+TGG | + | chr2_3:8150681-8150700 | Msa0275990:CDS | 25.0% |
| !! | AAGTTGATTATGATTGCTTT+GGG | + | chr2_3:8150682-8150701 | Msa0275990:CDS | 25.0% |
| ! | ACAAATCATGTCATACTTAT+TGG | - | chr2_3:8150739-8150758 | None:intergenic | 25.0% |
| !!! | TAAAGCATTTTTAGAGAGTA+TGG | + | chr2_3:8150854-8150873 | Msa0275990:CDS | 25.0% |
| !!! | AAAGCATTTTTAGAGAGTAT+GGG | + | chr2_3:8150855-8150874 | Msa0275990:CDS | 25.0% |
| ! | ATGAATACATATCAACTTCA+TGG | + | chr2_3:8151107-8151126 | Msa0275990:CDS | 25.0% |
| !!! | TCACGATATACTTTTTATTG+GGG | - | chr2_3:8151545-8151564 | None:intergenic | 25.0% |
| !!! | GTCACGATATACTTTTTATT+GGG | - | chr2_3:8151546-8151565 | None:intergenic | 25.0% |
| !!! | AGTCACGATATACTTTTTAT+TGG | - | chr2_3:8151547-8151566 | None:intergenic | 25.0% |
| !! | TAAAAAGTATATCGTGACTT+TGG | + | chr2_3:8151548-8151567 | Msa0275990:CDS | 25.0% |
| ! | TTGCGGATTTACAATATTAA+AGG | + | chr2_3:8151642-8151661 | Msa0275990:CDS | 25.0% |
| ! | AACATCTTGTTAAGATGTAT+TGG | - | chr2_3:8151686-8151705 | None:intergenic | 25.0% |
| !! | AAAAAGCACAAAAAATCATG+TGG | + | chr2_3:8151865-8151884 | Msa0275990:CDS | 25.0% |
| !! | AAAAGCACAAAAAATCATGT+GGG | + | chr2_3:8151866-8151885 | Msa0275990:CDS | 25.0% |
| !!! | TACACTAAATCTTGTTTTGA+AGG | - | chr2_3:8150100-8150119 | None:intergenic | 25.0% |
| ! | ACAAGATTTAGTGTAAGAAA+AGG | + | chr2_3:8150105-8150124 | Msa0275990:CDS | 25.0% |
| ! | CAAGATTTAGTGTAAGAAAA+GGG | + | chr2_3:8150106-8150125 | Msa0275990:CDS | 25.0% |
| !!! | ACAGTAAAACTCTTTAAAAC+GGG | - | chr2_3:8150166-8150185 | None:intergenic | 25.0% |
| !! | AGTTTTACTGTTTCAAAGAA+GGG | + | chr2_3:8150175-8150194 | Msa0275990:CDS | 25.0% |
| ! | GGGTTTAAGAATAATGAATA+TGG | + | chr2_3:8150195-8150214 | Msa0275990:CDS | 25.0% |
| ! | GAAATATGTCAAATGTCAAA+CGG | + | chr2_3:8150379-8150398 | Msa0275990:CDS | 25.0% |
| ! | AAATATGTCAAATGTCAAAC+GGG | + | chr2_3:8150380-8150399 | Msa0275990:CDS | 25.0% |
| ! | GTATACGAGTTACAAATATT+TGG | + | chr2_3:8150430-8150449 | Msa0275990:CDS | 25.0% |
| !! | AAAGTTGATTATGATTGCTT+TGG | + | chr2_3:8150681-8150700 | Msa0275990:CDS | 25.0% |
| !! | AAGTTGATTATGATTGCTTT+GGG | + | chr2_3:8150682-8150701 | Msa0275990:CDS | 25.0% |
| ! | ACAAATCATGTCATACTTAT+TGG | - | chr2_3:8150739-8150758 | None:intergenic | 25.0% |
| !!! | TAAAGCATTTTTAGAGAGTA+TGG | + | chr2_3:8150854-8150873 | Msa0275990:CDS | 25.0% |
| !!! | AAAGCATTTTTAGAGAGTAT+GGG | + | chr2_3:8150855-8150874 | Msa0275990:CDS | 25.0% |
| ! | ATGAATACATATCAACTTCA+TGG | + | chr2_3:8151107-8151126 | Msa0275990:CDS | 25.0% |
| !!! | TCACGATATACTTTTTATTG+GGG | - | chr2_3:8151545-8151564 | None:intergenic | 25.0% |
| !!! | GTCACGATATACTTTTTATT+GGG | - | chr2_3:8151546-8151565 | None:intergenic | 25.0% |
| !!! | AGTCACGATATACTTTTTAT+TGG | - | chr2_3:8151547-8151566 | None:intergenic | 25.0% |
| !! | TAAAAAGTATATCGTGACTT+TGG | + | chr2_3:8151548-8151567 | Msa0275990:CDS | 25.0% |
| ! | TTGCGGATTTACAATATTAA+AGG | + | chr2_3:8151642-8151661 | Msa0275990:CDS | 25.0% |
| ! | AACATCTTGTTAAGATGTAT+TGG | - | chr2_3:8151686-8151705 | None:intergenic | 25.0% |
| !! | AAAAAGCACAAAAAATCATG+TGG | + | chr2_3:8151865-8151884 | Msa0275990:CDS | 25.0% |
| !! | AAAAGCACAAAAAATCATGT+GGG | + | chr2_3:8151866-8151885 | Msa0275990:CDS | 25.0% |
| TGTCAATCAGTTGAAATTGA+TGG | + | chr2_3:8150003-8150022 | Msa0275990:CDS | 30.0% | |
| ! | GGATGCAAAGATATTTTTCT+TGG | + | chr2_3:8150024-8150043 | Msa0275990:CDS | 30.0% |
| ATTTAGTGTAAGAAAAGGGA+GGG | + | chr2_3:8150110-8150129 | Msa0275990:CDS | 30.0% | |
| ! | GAGTTTTACTGTTTCAAAGA+AGG | + | chr2_3:8150174-8150193 | Msa0275990:CDS | 30.0% |
| GACATTTGACATATTTCTCA+TGG | - | chr2_3:8150376-8150395 | None:intergenic | 30.0% | |
| AATTCACCATAGACTTTATG+AGG | - | chr2_3:8150407-8150426 | None:intergenic | 30.0% | |
| ATAAAGTCTATGGTGAATTG+TGG | + | chr2_3:8150408-8150427 | Msa0275990:CDS | 30.0% | |
| AAGTTGAAATTGATTGAAGC+TGG | + | chr2_3:8150534-8150553 | Msa0275990:CDS | 30.0% | |
| AGTTGAAATTGATTGAAGCT+GGG | + | chr2_3:8150535-8150554 | Msa0275990:CDS | 30.0% | |
| AGTTGATTATGATTGCTTTG+GGG | + | chr2_3:8150683-8150702 | Msa0275990:CDS | 30.0% | |
| ATGATTTATCCCAACAAATG+GGG | - | chr2_3:8150763-8150782 | None:intergenic | 30.0% | |
| GATGATTTATCCCAACAAAT+GGG | - | chr2_3:8150764-8150783 | None:intergenic | 30.0% | |
| TGATGATTTATCCCAACAAA+TGG | - | chr2_3:8150765-8150784 | None:intergenic | 30.0% | |
| TTGTTGGGATAAATCATCAT+TGG | + | chr2_3:8150766-8150785 | Msa0275990:CDS | 30.0% | |
| AAAAAATGCTCCTTCACATT+TGG | + | chr2_3:8150986-8151005 | Msa0275990:CDS | 30.0% | |
| AAAAATGCTCCTTCACATTT+GGG | + | chr2_3:8150987-8151006 | Msa0275990:CDS | 30.0% | |
| AAGAAGAAATTCAAACCACT+TGG | + | chr2_3:8151075-8151094 | Msa0275990:CDS | 30.0% | |
| AGAAGAAATTCAAACCACTT+GGG | + | chr2_3:8151076-8151095 | Msa0275990:CDS | 30.0% | |
| ! | AGTAATCATGTATTTTCTGC+TGG | + | chr2_3:8151185-8151204 | Msa0275990:CDS | 30.0% |
| !! | ATGTCTCTCACAATTTTTAG+TGG | + | chr2_3:8151274-8151293 | Msa0275990:CDS | 30.0% |
| CAAGATGTTCAAAAAATGCA+AGG | + | chr2_3:8151697-8151716 | Msa0275990:CDS | 30.0% | |
| TCTTCAGTTGAATTTAAGTC+AGG | - | chr2_3:8151939-8151958 | None:intergenic | 30.0% | |
| GAACAATTTCTCACAAAATG+AGG | + | chr2_3:8151968-8151987 | Msa0275990:CDS | 30.0% | |
| ! | TTTTCTCAAAATGTCCTTTC+TGG | - | chr2_3:8152058-8152077 | None:intergenic | 30.0% |
| TGTCAATCAGTTGAAATTGA+TGG | + | chr2_3:8150003-8150022 | Msa0275990:CDS | 30.0% | |
| ! | GGATGCAAAGATATTTTTCT+TGG | + | chr2_3:8150024-8150043 | Msa0275990:CDS | 30.0% |
| ATTTAGTGTAAGAAAAGGGA+GGG | + | chr2_3:8150110-8150129 | Msa0275990:CDS | 30.0% | |
| ! | GAGTTTTACTGTTTCAAAGA+AGG | + | chr2_3:8150174-8150193 | Msa0275990:CDS | 30.0% |
| GACATTTGACATATTTCTCA+TGG | - | chr2_3:8150376-8150395 | None:intergenic | 30.0% | |
| AATTCACCATAGACTTTATG+AGG | - | chr2_3:8150407-8150426 | None:intergenic | 30.0% | |
| ATAAAGTCTATGGTGAATTG+TGG | + | chr2_3:8150408-8150427 | Msa0275990:CDS | 30.0% | |
| AAGTTGAAATTGATTGAAGC+TGG | + | chr2_3:8150534-8150553 | Msa0275990:CDS | 30.0% | |
| AGTTGAAATTGATTGAAGCT+GGG | + | chr2_3:8150535-8150554 | Msa0275990:CDS | 30.0% | |
| AGTTGATTATGATTGCTTTG+GGG | + | chr2_3:8150683-8150702 | Msa0275990:CDS | 30.0% | |
| ATGATTTATCCCAACAAATG+GGG | - | chr2_3:8150763-8150782 | None:intergenic | 30.0% | |
| GATGATTTATCCCAACAAAT+GGG | - | chr2_3:8150764-8150783 | None:intergenic | 30.0% | |
| TGATGATTTATCCCAACAAA+TGG | - | chr2_3:8150765-8150784 | None:intergenic | 30.0% | |
| TTGTTGGGATAAATCATCAT+TGG | + | chr2_3:8150766-8150785 | Msa0275990:CDS | 30.0% | |
| AAAAAATGCTCCTTCACATT+TGG | + | chr2_3:8150986-8151005 | Msa0275990:CDS | 30.0% | |
| AAAAATGCTCCTTCACATTT+GGG | + | chr2_3:8150987-8151006 | Msa0275990:CDS | 30.0% | |
| AAGAAGAAATTCAAACCACT+TGG | + | chr2_3:8151075-8151094 | Msa0275990:CDS | 30.0% | |
| AGAAGAAATTCAAACCACTT+GGG | + | chr2_3:8151076-8151095 | Msa0275990:CDS | 30.0% | |
| ! | AGTAATCATGTATTTTCTGC+TGG | + | chr2_3:8151185-8151204 | Msa0275990:CDS | 30.0% |
| !! | ATGTCTCTCACAATTTTTAG+TGG | + | chr2_3:8151274-8151293 | Msa0275990:CDS | 30.0% |
| CAAGATGTTCAAAAAATGCA+AGG | + | chr2_3:8151697-8151716 | Msa0275990:CDS | 30.0% | |
| TCTTCAGTTGAATTTAAGTC+AGG | - | chr2_3:8151939-8151958 | None:intergenic | 30.0% | |
| GAACAATTTCTCACAAAATG+AGG | + | chr2_3:8151968-8151987 | Msa0275990:CDS | 30.0% | |
| ! | TTTTCTCAAAATGTCCTTTC+TGG | - | chr2_3:8152058-8152077 | None:intergenic | 30.0% |
| GATTTAGTGTAAGAAAAGGG+AGG | + | chr2_3:8150109-8150128 | Msa0275990:CDS | 35.0% | |
| TAATGAATATGGAGGTGAAG+TGG | + | chr2_3:8150206-8150225 | Msa0275990:CDS | 35.0% | |
| ! | CTTATGAAAGAGCTGATTCA+AGG | + | chr2_3:8150229-8150248 | Msa0275990:CDS | 35.0% |
| AAGGACAAATTGCAAAGCTA+TGG | + | chr2_3:8150248-8150267 | Msa0275990:CDS | 35.0% | |
| AGGATTAATGTTAGCAAGGA+AGG | + | chr2_3:8150273-8150292 | Msa0275990:CDS | 35.0% | |
| TTGGAATTATTTAGGGGAAG+AGG | + | chr2_3:8150449-8150468 | Msa0275990:CDS | 35.0% | |
| AATTATTTAGGGGAAGAGGT+CGG | + | chr2_3:8150453-8150472 | Msa0275990:CDS | 35.0% | |
| GTTGAAATTGATTGAAGCTG+GGG | + | chr2_3:8150536-8150555 | Msa0275990:CDS | 35.0% | |
| TGCACACTGTAATAGAACAT+AGG | - | chr2_3:8150609-8150628 | None:intergenic | 35.0% | |
| ! | CTCGTTTGACTAATGTCTTT+TGG | + | chr2_3:8150643-8150662 | Msa0275990:CDS | 35.0% |
| !! | ACTAATGTCTTTTGGAGAGA+TGG | + | chr2_3:8150651-8150670 | Msa0275990:CDS | 35.0% |
| CATTGGCAAAATGTCATGTT+TGG | + | chr2_3:8150783-8150802 | Msa0275990:CDS | 35.0% | |
| ATCAACTTCATGGTCACAAA+TGG | + | chr2_3:8151117-8151136 | Msa0275990:CDS | 35.0% | |
| TGTATGCAATTCGCATCAAA+TGG | + | chr2_3:8151150-8151169 | Msa0275990:CDS | 35.0% | |
| ! | GAGAGTACAAATAGTGCTTT+AGG | + | chr2_3:8151230-8151249 | Msa0275990:CDS | 35.0% |
| TTTAGTGGCATTTGAGAAGA+TGG | + | chr2_3:8151289-8151308 | Msa0275990:CDS | 35.0% | |
| CATTTGAGAAGATGGTGAAA+AGG | + | chr2_3:8151297-8151316 | Msa0275990:CDS | 35.0% | |
| TCACTACTGTTTATAACACG+AGG | - | chr2_3:8151374-8151393 | None:intergenic | 35.0% | |
| TTGTCACAAGTTCGAATCTA+TGG | + | chr2_3:8151599-8151618 | Msa0275990:CDS | 35.0% | |
| TGTCACAAGTTCGAATCTAT+GGG | + | chr2_3:8151600-8151619 | Msa0275990:CDS | 35.0% | |
| ! | CTTGTTAAGATGTATTGGTC+AGG | - | chr2_3:8151681-8151700 | None:intergenic | 35.0% |
| ATCACCATCAGACATTGAAT+TGG | - | chr2_3:8151772-8151791 | None:intergenic | 35.0% | |
| !!! | CAATTTAGTTTTGGAATCCC+AGG | + | chr2_3:8151836-8151855 | Msa0275990:CDS | 35.0% |
| ATGTGGGAATTGCTTGATAT+TGG | + | chr2_3:8151882-8151901 | Msa0275990:CDS | 35.0% | |
| TGCTTGATATTGGAGTTAAG+AGG | + | chr2_3:8151892-8151911 | Msa0275990:CDS | 35.0% | |
| GCTTGATATTGGAGTTAAGA+GGG | + | chr2_3:8151893-8151912 | Msa0275990:CDS | 35.0% | |
| GATTTAGTGTAAGAAAAGGG+AGG | + | chr2_3:8150109-8150128 | Msa0275990:CDS | 35.0% | |
| TAATGAATATGGAGGTGAAG+TGG | + | chr2_3:8150206-8150225 | Msa0275990:CDS | 35.0% | |
| ! | CTTATGAAAGAGCTGATTCA+AGG | + | chr2_3:8150229-8150248 | Msa0275990:CDS | 35.0% |
| AAGGACAAATTGCAAAGCTA+TGG | + | chr2_3:8150248-8150267 | Msa0275990:CDS | 35.0% | |
| AGGATTAATGTTAGCAAGGA+AGG | + | chr2_3:8150273-8150292 | Msa0275990:CDS | 35.0% | |
| TTGGAATTATTTAGGGGAAG+AGG | + | chr2_3:8150449-8150468 | Msa0275990:CDS | 35.0% | |
| AATTATTTAGGGGAAGAGGT+CGG | + | chr2_3:8150453-8150472 | Msa0275990:CDS | 35.0% | |
| GTTGAAATTGATTGAAGCTG+GGG | + | chr2_3:8150536-8150555 | Msa0275990:CDS | 35.0% | |
| TGCACACTGTAATAGAACAT+AGG | - | chr2_3:8150609-8150628 | None:intergenic | 35.0% | |
| ! | CTCGTTTGACTAATGTCTTT+TGG | + | chr2_3:8150643-8150662 | Msa0275990:CDS | 35.0% |
| !! | ACTAATGTCTTTTGGAGAGA+TGG | + | chr2_3:8150651-8150670 | Msa0275990:CDS | 35.0% |
| CATTGGCAAAATGTCATGTT+TGG | + | chr2_3:8150783-8150802 | Msa0275990:CDS | 35.0% | |
| ATCAACTTCATGGTCACAAA+TGG | + | chr2_3:8151117-8151136 | Msa0275990:CDS | 35.0% | |
| TGTATGCAATTCGCATCAAA+TGG | + | chr2_3:8151150-8151169 | Msa0275990:CDS | 35.0% | |
| ! | GAGAGTACAAATAGTGCTTT+AGG | + | chr2_3:8151230-8151249 | Msa0275990:CDS | 35.0% |
| TTTAGTGGCATTTGAGAAGA+TGG | + | chr2_3:8151289-8151308 | Msa0275990:CDS | 35.0% | |
| CATTTGAGAAGATGGTGAAA+AGG | + | chr2_3:8151297-8151316 | Msa0275990:CDS | 35.0% | |
| TCACTACTGTTTATAACACG+AGG | - | chr2_3:8151374-8151393 | None:intergenic | 35.0% | |
| TTGTCACAAGTTCGAATCTA+TGG | + | chr2_3:8151599-8151618 | Msa0275990:CDS | 35.0% | |
| TGTCACAAGTTCGAATCTAT+GGG | + | chr2_3:8151600-8151619 | Msa0275990:CDS | 35.0% | |
| ! | CTTGTTAAGATGTATTGGTC+AGG | - | chr2_3:8151681-8151700 | None:intergenic | 35.0% |
| ATCACCATCAGACATTGAAT+TGG | - | chr2_3:8151772-8151791 | None:intergenic | 35.0% | |
| !!! | CAATTTAGTTTTGGAATCCC+AGG | + | chr2_3:8151836-8151855 | Msa0275990:CDS | 35.0% |
| ATGTGGGAATTGCTTGATAT+TGG | + | chr2_3:8151882-8151901 | Msa0275990:CDS | 35.0% | |
| TGCTTGATATTGGAGTTAAG+AGG | + | chr2_3:8151892-8151911 | Msa0275990:CDS | 35.0% | |
| GCTTGATATTGGAGTTAAGA+GGG | + | chr2_3:8151893-8151912 | Msa0275990:CDS | 35.0% | |
| ATGTTAGCAAGGAAGGAGTT+TGG | + | chr2_3:8150280-8150299 | Msa0275990:CDS | 40.0% | |
| AACAAATGTCTTTGCTCAGG+AGG | - | chr2_3:8150348-8150367 | None:intergenic | 40.0% | |
| ! | CTGAGCAAAGACATTTGTTG+CGG | + | chr2_3:8150349-8150368 | Msa0275990:CDS | 40.0% |
| GTCGGTGGATATAACAATCT+TGG | + | chr2_3:8150471-8150490 | Msa0275990:CDS | 40.0% | |
| ! | ATGATTTGTGCCCCATTTGT+TGG | + | chr2_3:8150750-8150769 | Msa0275990:CDS | 40.0% |
| ! | TGATTTGTGCCCCATTTGTT+GGG | + | chr2_3:8150751-8150770 | Msa0275990:CDS | 40.0% |
| ! | GTTTGGTTGTGCTTTGTTGT+TGG | + | chr2_3:8150800-8150819 | Msa0275990:CDS | 40.0% |
| TACAGATCAAGATCCAGCTA+TGG | + | chr2_3:8150902-8150921 | Msa0275990:CDS | 40.0% | |
| ACAGATCAAGATCCAGCTAT+GGG | + | chr2_3:8150903-8150922 | Msa0275990:CDS | 40.0% | |
| TTGAGAGATCCCAAATGTGA+AGG | - | chr2_3:8150999-8151018 | None:intergenic | 40.0% | |
| ATTCATCATCTCATCCCAAG+TGG | - | chr2_3:8151093-8151112 | None:intergenic | 40.0% | |
| CTGGTATCAAATCTTCTCAG+AGG | + | chr2_3:8151204-8151223 | Msa0275990:CDS | 40.0% | |
| !! | AGTGCTTTAGGAGATATTGC+AGG | + | chr2_3:8151242-8151261 | Msa0275990:CDS | 40.0% |
| TTGAGAAGATGGTGAAAAGG+TGG | + | chr2_3:8151300-8151319 | Msa0275990:CDS | 40.0% | |
| CTACTGTTTATAACACGAGG+AGG | - | chr2_3:8151371-8151390 | None:intergenic | 40.0% | |
| AATGAGTATCTTAATGGGGC+AGG | + | chr2_3:8151450-8151469 | Msa0275990:intron | 40.0% | |
| TTTGGACTCATCCACTTCTA+TGG | + | chr2_3:8151566-8151585 | Msa0275990:CDS | 40.0% | |
| ACTGCAACTAACCATAGAAG+TGG | - | chr2_3:8151580-8151599 | None:intergenic | 40.0% | |
| TTCTTTGCAGTCATGCTTTG+CGG | + | chr2_3:8151625-8151644 | Msa0275990:CDS | 40.0% | |
| ACCTCCAATTCAATGTCTGA+TGG | + | chr2_3:8151765-8151784 | Msa0275990:CDS | 40.0% | |
| ACCATCAGACATTGAATTGG+AGG | - | chr2_3:8151769-8151788 | None:intergenic | 40.0% | |
| ! | ATGTCTGATGGTGATGATTC+CGG | + | chr2_3:8151777-8151796 | Msa0275990:CDS | 40.0% |
| AAGACTTCAGAATAGCGTTG+CGG | - | chr2_3:8151812-8151831 | None:intergenic | 40.0% | |
| !!! | TTTAGTTTTGGAATCCCAGG+AGG | + | chr2_3:8151839-8151858 | Msa0275990:CDS | 40.0% |
| !!! | TTGTGCTTTTTTGTCCTCCT+GGG | - | chr2_3:8151856-8151875 | None:intergenic | 40.0% |
| !!! | TTTGTGCTTTTTTGTCCTCC+TGG | - | chr2_3:8151857-8151876 | None:intergenic | 40.0% |
| ATGTTAGCAAGGAAGGAGTT+TGG | + | chr2_3:8150280-8150299 | Msa0275990:CDS | 40.0% | |
| AACAAATGTCTTTGCTCAGG+AGG | - | chr2_3:8150348-8150367 | None:intergenic | 40.0% | |
| ! | CTGAGCAAAGACATTTGTTG+CGG | + | chr2_3:8150349-8150368 | Msa0275990:CDS | 40.0% |
| GTCGGTGGATATAACAATCT+TGG | + | chr2_3:8150471-8150490 | Msa0275990:CDS | 40.0% | |
| ! | ATGATTTGTGCCCCATTTGT+TGG | + | chr2_3:8150750-8150769 | Msa0275990:CDS | 40.0% |
| ! | TGATTTGTGCCCCATTTGTT+GGG | + | chr2_3:8150751-8150770 | Msa0275990:CDS | 40.0% |
| ! | GTTTGGTTGTGCTTTGTTGT+TGG | + | chr2_3:8150800-8150819 | Msa0275990:CDS | 40.0% |
| TACAGATCAAGATCCAGCTA+TGG | + | chr2_3:8150902-8150921 | Msa0275990:CDS | 40.0% | |
| ACAGATCAAGATCCAGCTAT+GGG | + | chr2_3:8150903-8150922 | Msa0275990:CDS | 40.0% | |
| TTGAGAGATCCCAAATGTGA+AGG | - | chr2_3:8150999-8151018 | None:intergenic | 40.0% | |
| ATTCATCATCTCATCCCAAG+TGG | - | chr2_3:8151093-8151112 | None:intergenic | 40.0% | |
| CTGGTATCAAATCTTCTCAG+AGG | + | chr2_3:8151204-8151223 | Msa0275990:CDS | 40.0% | |
| !! | AGTGCTTTAGGAGATATTGC+AGG | + | chr2_3:8151242-8151261 | Msa0275990:CDS | 40.0% |
| TTGAGAAGATGGTGAAAAGG+TGG | + | chr2_3:8151300-8151319 | Msa0275990:CDS | 40.0% | |
| CTACTGTTTATAACACGAGG+AGG | - | chr2_3:8151371-8151390 | None:intergenic | 40.0% | |
| AATGAGTATCTTAATGGGGC+AGG | + | chr2_3:8151450-8151469 | Msa0275990:intron | 40.0% | |
| TTTGGACTCATCCACTTCTA+TGG | + | chr2_3:8151566-8151585 | Msa0275990:CDS | 40.0% | |
| ACTGCAACTAACCATAGAAG+TGG | - | chr2_3:8151580-8151599 | None:intergenic | 40.0% | |
| TTCTTTGCAGTCATGCTTTG+CGG | + | chr2_3:8151625-8151644 | Msa0275990:CDS | 40.0% | |
| ACCTCCAATTCAATGTCTGA+TGG | + | chr2_3:8151765-8151784 | Msa0275990:CDS | 40.0% | |
| ACCATCAGACATTGAATTGG+AGG | - | chr2_3:8151769-8151788 | None:intergenic | 40.0% | |
| ! | ATGTCTGATGGTGATGATTC+CGG | + | chr2_3:8151777-8151796 | Msa0275990:CDS | 40.0% |
| AAGACTTCAGAATAGCGTTG+CGG | - | chr2_3:8151812-8151831 | None:intergenic | 40.0% | |
| !!! | TTTAGTTTTGGAATCCCAGG+AGG | + | chr2_3:8151839-8151858 | Msa0275990:CDS | 40.0% |
| !!! | TTGTGCTTTTTTGTCCTCCT+GGG | - | chr2_3:8151856-8151875 | None:intergenic | 40.0% |
| !!! | TTTGTGCTTTTTTGTCCTCC+TGG | - | chr2_3:8151857-8151876 | None:intergenic | 40.0% |
| CAAATTGCAAAGCTATGGCG+AGG | + | chr2_3:8150253-8150272 | Msa0275990:CDS | 45.0% | |
| GGCGAGGATTAATGTTAGCA+AGG | + | chr2_3:8150269-8150288 | Msa0275990:CDS | 45.0% | |
| CGCAACAAATGTCTTTGCTC+AGG | - | chr2_3:8150351-8150370 | None:intergenic | 45.0% | |
| ACGGGACCTCATAAAGTCTA+TGG | + | chr2_3:8150398-8150417 | Msa0275990:CDS | 45.0% | |
| TTACAGTGTGCAGCTAGATC+AGG | + | chr2_3:8150617-8150636 | Msa0275990:CDS | 45.0% | |
| CACAGTCGATGACGTGTATT+TGG | - | chr2_3:8150951-8150970 | None:intergenic | 45.0% | |
| GAAAAGGTGGCGACAATTAG+AGG | + | chr2_3:8151313-8151332 | Msa0275990:CDS | 45.0% | |
| AACTCTACGACATGCATCTG+TGG | + | chr2_3:8151394-8151413 | Msa0275990:intron | 45.0% | |
| ATCACATCGACCAATCTCCA+CGG | - | chr2_3:8151487-8151506 | None:intergenic | 45.0% | |
| GTTTCGCAAAGACGAAAGGA+AGG | + | chr2_3:8152021-8152040 | Msa0275990:CDS | 45.0% | |
| CAAATTGCAAAGCTATGGCG+AGG | + | chr2_3:8150253-8150272 | Msa0275990:CDS | 45.0% | |
| GGCGAGGATTAATGTTAGCA+AGG | + | chr2_3:8150269-8150288 | Msa0275990:CDS | 45.0% | |
| CGCAACAAATGTCTTTGCTC+AGG | - | chr2_3:8150351-8150370 | None:intergenic | 45.0% | |
| ACGGGACCTCATAAAGTCTA+TGG | + | chr2_3:8150398-8150417 | Msa0275990:CDS | 45.0% | |
| TTACAGTGTGCAGCTAGATC+AGG | + | chr2_3:8150617-8150636 | Msa0275990:CDS | 45.0% | |
| CACAGTCGATGACGTGTATT+TGG | - | chr2_3:8150951-8150970 | None:intergenic | 45.0% | |
| GAAAAGGTGGCGACAATTAG+AGG | + | chr2_3:8151313-8151332 | Msa0275990:CDS | 45.0% | |
| AACTCTACGACATGCATCTG+TGG | + | chr2_3:8151394-8151413 | Msa0275990:intron | 45.0% | |
| ATCACATCGACCAATCTCCA+CGG | - | chr2_3:8151487-8151506 | None:intergenic | 45.0% | |
| GTTTCGCAAAGACGAAAGGA+AGG | + | chr2_3:8152021-8152040 | Msa0275990:CDS | 45.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | + | chr2_3:8150456-8150475 | Msa0275990:CDS | 50.0% | |
| CCAATTGCTTTGCCCATAGC+TGG | - | chr2_3:8150918-8150937 | None:intergenic | 50.0% | |
| CCAGCTATGGGCAAAGCAAT+TGG | + | chr2_3:8150915-8150934 | Msa0275990:CDS | 50.0% | |
| ! | CACGTCATCGACTGTGTTTG+TGG | + | chr2_3:8150955-8150974 | Msa0275990:CDS | 50.0% |
| GAGTATCTTAATGGGGCAGG+TGG | + | chr2_3:8151453-8151472 | Msa0275990:intron | 50.0% | |
| AGCGTTGCGGTAAAGAAGAC+CGG | - | chr2_3:8151799-8151818 | None:intergenic | 50.0% | |
| CCTTTCGTCTTTGCGAAACG+AGG | - | chr2_3:8152020-8152039 | None:intergenic | 50.0% | |
| CCTCGTTTCGCAAAGACGAA+AGG | + | chr2_3:8152017-8152036 | Msa0275990:CDS | 50.0% | |
| AGGTCTAGTGTTCGCCAGAA+AGG | + | chr2_3:8152041-8152060 | Msa0275990:CDS | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | + | chr2_3:8150456-8150475 | Msa0275990:CDS | 50.0% | |
| CCAATTGCTTTGCCCATAGC+TGG | - | chr2_3:8150918-8150937 | None:intergenic | 50.0% | |
| CCAGCTATGGGCAAAGCAAT+TGG | + | chr2_3:8150915-8150934 | Msa0275990:CDS | 50.0% | |
| ! | CACGTCATCGACTGTGTTTG+TGG | + | chr2_3:8150955-8150974 | Msa0275990:CDS | 50.0% |
| GAGTATCTTAATGGGGCAGG+TGG | + | chr2_3:8151453-8151472 | Msa0275990:intron | 50.0% | |
| AGCGTTGCGGTAAAGAAGAC+CGG | - | chr2_3:8151799-8151818 | None:intergenic | 50.0% | |
| CCTTTCGTCTTTGCGAAACG+AGG | - | chr2_3:8152020-8152039 | None:intergenic | 50.0% | |
| CCTCGTTTCGCAAAGACGAA+AGG | + | chr2_3:8152017-8152036 | Msa0275990:CDS | 50.0% | |
| AGGTCTAGTGTTCGCCAGAA+AGG | + | chr2_3:8152041-8152060 | Msa0275990:CDS | 50.0% | |
| !! | GGAAGCACTTCCGTGGAGAT+TGG | + | chr2_3:8151474-8151493 | Msa0275990:CDS | 55.0% |
| !! | GGAAGCACTTCCGTGGAGAT+TGG | + | chr2_3:8151474-8151493 | Msa0275990:CDS | 55.0% |
| !! | GGCAGGTGGAAGCACTTCCG+TGG | + | chr2_3:8151467-8151486 | Msa0275990:intron | 65.0% |
| !! | GGCAGGTGGAAGCACTTCCG+TGG | + | chr2_3:8151467-8151486 | Msa0275990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8149988 | 8152085 | 8149988 | ID=Msa0275990;Name=Msa0275990 |
| chr2_3 | mRNA | 8149988 | 8152085 | 8149988 | ID=Msa0275990-mRNA-1;Parent=Msa0275990;Name=Msa0275990-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.5|1|1|2|0|670 |
| chr2_3 | exon | 8149988 | 8151386 | 8149988 | ID=Msa0275990-mRNA-1:exon:3711;Parent=Msa0275990-mRNA-1 |
| chr2_3 | exon | 8151472 | 8152085 | 8151472 | ID=Msa0275990-mRNA-1:exon:3712;Parent=Msa0275990-mRNA-1 |
| chr2_3 | CDS | 8149988 | 8151386 | 8149988 | ID=Msa0275990-mRNA-1:cds;Parent=Msa0275990-mRNA-1 |
| chr2_3 | CDS | 8151472 | 8152085 | 8151472 | ID=Msa0275990-mRNA-1:cds;Parent=Msa0275990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
