AlfalfaGEDB | Msa0276010

M. sativa cultivar zhongmu-4 / Msa0276010

KEGG: K04730
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276010	XP_013462818.2	95.318	598	27	1	1	598	21	617	0.0	1178

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276010	sp\|O48788\|Y2267_ARATH	36.792	636	322	21	2	590	21	623	7.80e-98	315

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276010	A0A396J6L6	95.318	598	27	1	1	598	21	617	0.0	1178

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276010	MtrunA17_Chr2g0288391	95.318	598	27	1	1	598	21	617	0.0	1178
Msa0276010	MtrunA17_Chr8g0376301	83.759	431	20	4	170	598	9	391	0.0	707
Msa0276010	MtrunA17_Chr3g0117921	46.314	624	296	10	5	596	25	641	0.0	526
Msa0276010	MtrunA17_Chr3g0108301	33.333	615	354	19	10	592	42	632	1.52e-90	293
Msa0276010	MtrunA17_Chr3g0128551	34.370	611	344	17	15	592	34	620	2.41e-90	291
Msa0276010	MtrunA17_Chr7g0245171	35.073	613	328	23	10	587	30	607	1.45e-88	286
Msa0276010	MtrunA17_Chr1g0209521	34.385	634	331	23	16	590	34	641	2.03e-88	288
Msa0276010	MtrunA17_Chr5g0432851	33.937	607	350	18	10	590	50	631	1.09e-85	280
Msa0276010	MtrunA17_Chr5g0423121	32.577	617	339	19	11	588	31	609	8.39e-85	277
Msa0276010	MtrunA17_Chr8g0387791	32.803	628	329	20	4	587	18	596	1.79e-84	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276010	AT2G26730.1	36.792	636	322	21	2	590	21	623	7.93e-99	315
Msa0276010	AT1G68400.1	33.068	629	343	20	12	587	34	637	1.74e-83	275
Msa0276010	AT5G58300.3	34.122	592	330	18	30	587	65	630	2.89e-83	274
Msa0276010	AT5G58300.1	34.122	592	330	18	30	587	65	630	2.89e-83	274
Msa0276010	AT5G58300.2	34.122	592	330	18	30	587	65	630	2.89e-83	274
Msa0276010	AT3G08680.1	33.063	617	344	23	10	587	29	615	3.24e-81	268
Msa0276010	AT3G08680.2	33.063	617	344	23	10	587	29	615	3.24e-81	268
Msa0276010	AT5G05160.1	32.125	607	345	20	30	597	49	627	9.22e-79	261
Msa0276010	AT5G53320.1	31.156	597	349	15	8	590	25	573	7.81e-78	258
Msa0276010	AT1G64210.1	31.981	616	322	21	10	587	26	582	9.79e-76	252

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Find 110 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGGAAGTCTTTATA+AGG	0.363606	2_3:+8168337	Msa0276010:CDS
AAATTAGAGAAATAAAATGT+TGG	0.548949	2_3:-8167819	None:intergenic
AACATGATTAGTTGTGAGAA+TGG	0.564369	2_3:+8167312	None:intergenic
AAGAAATAACCTTGCAAATC+TGG	0.240365	2_3:-8167885	None:intergenic
AAGAGTATGCAAGTGAAGAG+AGG	0.544291	2_3:+8169584	Msa0276010:CDS
AAGCAAGATGTTTATGGATT+TGG	0.267147	2_3:+8169436	Msa0276010:CDS
AAGGTGAGAGATTCAGCTAG+AGG	0.622866	2_3:-8167546	None:intergenic
AAGTCTGCTGCTCCAATCAA+AGG	0.557226	2_3:-8169212	None:intergenic
AAGTTGAATTATTATTCTGC+TGG	0.446252	2_3:-8167380	None:intergenic
AATCACTTATTGTTCTTTCA+AGG	0.349207	2_3:+8168249	Msa0276010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGAAGTTGGATCTTTAC+AGG	+	chr2_3:8167475-8167494	Msa0276010:CDS	30.0%
TGGACCACTAAAATTGTTAA+AGG	-	chr2_3:8167862-8167881	None:intergenic	30.0%
AAGAAATAACCTTGCAAATC+TGG	-	chr2_3:8167888-8167907	None:intergenic	30.0%
ATCTTACTAACAGTGCTTAA+AGG	-	chr2_3:8167978-8167997	None:intergenic	30.0%
GATATCAGAAGAAGAATCAA+AGG	+	chr2_3:8167995-8168014	Msa0276010:CDS	30.0%
GAACAAATTCTTATGTACTC+AGG	+	chr2_3:8168029-8168048	Msa0276010:CDS	30.0%
TGTGTATAAGAAAGAAGAGT+GGG	+	chr2_3:8168099-8168118	Msa0276010:CDS	30.0%
AAGGACTTATTTCACTTTCA+GGG	-	chr2_3:8168648-8168667	None:intergenic	30.0%
TAGAAAATTAGGTGAAACCA+TGG	+	chr2_3:8169043-8169062	Msa0276010:intron	30.0%
TTGAATGCATTAGCATCATT+AGG	-	chr2_3:8169418-8169437	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	8167315	8169741	8167315	ID=Msa0276010;Name=Msa0276010
chr2_3	mRNA	8167315	8169741	8167315	ID=Msa0276010-mRNA-1;Parent=Msa0276010;Name=Msa0276010-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|598
chr2_3	exon	8167315	8168545	8167315	ID=Msa0276010-mRNA-1:exon:3713;Parent=Msa0276010-mRNA-1
chr2_3	exon	8169176	8169741	8169176	ID=Msa0276010-mRNA-1:exon:3714;Parent=Msa0276010-mRNA-1
chr2_3	CDS	8167315	8168545	8167315	ID=Msa0276010-mRNA-1:cds;Parent=Msa0276010-mRNA-1
chr2_3	CDS	8169176	8169741	8169176	ID=Msa0276010-mRNA-1:cds;Parent=Msa0276010-mRNA-1

Gene Sequence

>Msa0276010

ATGATTAGTTGTGAGAATGGTGAGATGAAGAGAACACTAATACAGTTCTTGACACAACTCGAAGGCCAGCAGAATAATAATTCAACTTTGGTCTGGAAACCAGACACTGATCCCTGCAAGGATCATTGGAATGGTGTATACTGTGATGCACAAATGTCAATAAAGAAGTTGGATCTTTACAGGTTCAATTTGTCTGGAACTCTCGACGTTGCCTTGCTTTGCAACCTGCAGCCTCTAGCTGAATCTCTCACCTTTCTTAGTCTCGATGACAACAACATCAGTGGCGGAATAACATCTGAGATCGGAAACTGCAAACAACTCACTCGCCTTCACCTAAGCGGAAACCAACTTGCTGGAAACCTTCCTACTTCACTTGCCATGTTGAACAATTTGAAAAGACTAGACATTTCAAACAACAAGTTTTCGGGACCGTTGCCAAACCTGGCTAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAATGAACTTAGTGGAAATATACCAACATTTTATTTCTCTAATTTTGACCGTTTCAATGTTTCCTTTAACAATTTTAGTGGTCCAATTCCAGATTTGCAAGGTTATTTCTTTGCAGACAGTTTTCTTGGTAATCCAAGACTATGTGGATATCCACTACAAAAAAATTGTACTAGTCAACCTTTAAGCACTGTTAGTAAGATATCAGAAGAAGAATCAAAGGGTGCTTCTAAAGAACAAATTCTTATGTACTCAGGCTATGCTGCATTAGGTTTTATCATAATATTTTTTGTAGTCTGGAAGCTGTGTATAAGAAAGAAGAGTGGGAAAAAAGTTCAAACAGAATTGAATGATGATATCGAAAAACCGAACTATGTTTCAAGCGAATCCAAAGCAGAAGAACTAAGCAAATCTGGATTTTCAGTTACCTCTGAAAGTGGAATGGTCTCACAACAATCACTTATTGTTCTTTCAAGGCCAGTAGTGAATGAATTGAAATTAGAGGAGTTGTTGAGAGCACCTGCTGAAATGATAGGAAGAGGAAAGAATGGAAGTCTTTATAAGGTGATGCTAACCAATGGGATTCAAGTGGTTGTAAAAAGGATTAAAGATTGGAGTATTTCTAGTGTTGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCAAAACACCCTCATGTTCTGCCACCTCTTGCTTTCTATTGTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCAGAATGGAATTGAAGTACTAGATATGCTTTCAGGCACATCAAAGACCTTTGATTGGAGCAGCAGACTTGGACTTGCATCTACAATTGCTGAAGCATTAGCTTTCATGCATCAAGAGCTTGGTCAACACGGTATTATTCATGGTAACATGAAATCCTCAAACATTTTGCTAAACATTAACATGGAGCCTTGTATTAGTGAATATGGCACTATGCCAAAGGATGATCAACAAAGTTCAACTTTTGCAACTCCTAATGATGCTAATGCATTCAAGCAAGATGTTTATGGATTTGGTGTTATTCTTCTTGAATTACTAACTGGAAAATTGGTGAAGAGTAATGGTATTGACTTGACTGAATGGGTTCAATCAGTTGTGAGGGAAGAATGGACAGGTGAAGTGTTTGATAGGTCATTATTGAAAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTCAATAGTTCATTAGAGGCTAGGCCAACTATGAATCAAGTGGCTCTTATGATTAACACTATCAAAGATGAAGAGGAAAAATCCTTGATCTACCAAGTTTGA

Protein sequence

>Msa0276010

MISCENGEMKRTLIQFLTQLEGQQNNNSTLVWKPDTDPCKDHWNGVYCDAQMSIKKLDLYRFNLSGTLDVALLCNLQPLAESLTFLSLDDNNISGGITSEIGNCKQLTRLHLSGNQLAGNLPTSLAMLNNLKRLDISNNKFSGPLPNLARISGLNMFLAQNNELSGNIPTFYFSNFDRFNVSFNNFSGPIPDLQGYFFADSFLGNPRLCGYPLQKNCTSQPLSTVSKISEEESKGASKEQILMYSGYAALGFIIIFFVVWKLCIRKKSGKKVQTELNDDIEKPNYVSSESKAEELSKSGFSVTSESGMVSQQSLIVLSRPVVNELKLEELLRAPAEMIGRGKNGSLYKVMLTNGIQVVVKRIKDWSISSVEFKQRMQLLNQAKHPHVLPPLAFYCSKQEKLLVYEYQQNGIEVLDMLSGTSKTFDWSSRLGLASTIAEALAFMHQELGQHGIIHGNMKSSNILLNINMEPCISEYGTMPKDDQQSSTFATPNDANAFKQDVYGFGVILLELLTGKLVKSNGIDLTEWVQSVVREEWTGEVFDRSLLKEYASEERMVNMLQVAIRCVNSSLEARPTMNQVALMINTIKDEEEKSLIYQV*