AlfalfaGEDB | Msa0276070

M. sativa cultivar zhongmu-4 / Msa0276070

KEGG: K08066|K19681
GO: GO:0000429 GO:0000436 GO:0000902 GO:0000904 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006457 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0019438 GO:0022008 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032990 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043457 GO:0043467 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045540 GO:0045893 GO:0045935 GO:0045944 GO:0045990 GO:0045991 GO:0046483 GO:0046890 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061564 GO:0062012 GO:0065007 GO:0070013 GO:0070887 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097485 GO:0097659 GO:0106118 GO:0120036 GO:0120039 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00125.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276070	XP_013462829.1	84.825	257	26	3	1	257	1	244	4.79e-144	413

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276070	sp\|Q9ZVL3\|NFYC3_ARATH	51.875	160	71	3	69	224	51	208	9.73e-48	160

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276070	I3TAY7	84.825	257	26	3	1	257	1	244	2.29e-144	413

TFs/TRs:

Gene ID	Type	Classification
Msa0276070	TF	NF-YC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276070	MtrunA17_Chr2g0288481	84.825	257	26	3	1	257	1	244	4.41e-148	413
Msa0276070	MtrunA17_Chr7g0272991	48.128	187	84	6	69	251	82	259	3.40e-52	170
Msa0276070	MtrunA17_Chr2g0310741	54.305	151	55	4	70	217	85	224	4.54e-50	165
Msa0276070	MtrunA17_Chr1g0191681	51.852	162	71	5	69	230	82	236	2.35e-49	163
Msa0276070	MtrunA17_Chr8g0376351	87.209	86	10	1	106	190	1	86	2.71e-47	152
Msa0276070	MtrunA17_Chr3g0132191	50.336	149	58	2	70	218	37	169	7.47e-43	145
Msa0276070	MtrunA17_Chr2g0318881	58.442	77	31	1	89	164	23	99	2.59e-23	91.7
Msa0276070	MtrunA17_Chr2g0318921	58.442	77	31	1	89	164	23	99	2.87e-23	91.3
Msa0276070	MtrunA17_Chr3g0081161	42.308	78	45	0	89	166	9	86	2.84e-12	65.5
Msa0276070	MtrunA17_Chr8g0354151	39.744	78	47	0	89	166	9	86	1.05e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276070	AT1G54830.2	51.875	160	71	3	69	224	51	208	9.90e-49	160
Msa0276070	AT1G54830.3	51.875	160	71	3	69	224	51	208	9.90e-49	160
Msa0276070	AT1G54830.1	51.875	160	71	3	69	224	51	208	9.90e-49	160
Msa0276070	AT1G56170.1	58.594	128	48	3	67	192	55	179	1.49e-48	159
Msa0276070	AT1G56170.2	58.594	128	48	3	67	192	55	179	1.49e-48	159
Msa0276070	AT1G08970.3	51.765	170	65	6	70	237	62	216	9.51e-48	158
Msa0276070	AT1G08970.4	51.765	170	65	6	70	237	62	216	9.51e-48	158
Msa0276070	AT1G08970.2	51.765	170	65	6	70	237	62	216	9.51e-48	158
Msa0276070	AT1G08970.1	51.765	170	65	6	70	237	62	216	9.51e-48	158
Msa0276070	AT3G48590.1	51.678	149	63	2	70	218	47	186	1.07e-45	153
Msa0276070	AT5G63470.2	57.812	128	51	2	70	194	60	187	2.87e-44	150
Msa0276070	AT5G63470.1	57.812	128	51	2	70	194	60	187	2.87e-44	150
Msa0276070	AT5G50480.1	46.250	160	69	5	66	223	35	179	1.93e-37	131
Msa0276070	AT5G27910.1	43.137	153	75	5	65	208	16	165	6.66e-31	113
Msa0276070	AT5G50470.1	41.860	129	66	2	70	192	48	173	7.98e-26	101
Msa0276070	AT5G50490.1	36.264	182	78	7	65	235	16	170	8.64e-26	100
Msa0276070	AT5G38140.1	39.806	103	60	1	63	165	44	144	1.15e-21	89.7

Find 55 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTGCTTAATCTTCTGAATT+TGG	0.149271	2_3:+8258383	None:intergenic
ATCTTCTTAATCCTTGTTAA+AGG	0.176282	2_3:+8258872	None:intergenic
AATGGAGCGTGACATATTTA+TGG	0.230451	2_3:-8258633	Msa0276070:CDS
GGCGAGGCACTGATACTATT+TGG	0.252757	2_3:+8259071	None:intergenic
TGGTCCTCCAAGAATGCTTA+TGG	0.263320	2_3:-8258513	Msa0276070:CDS
GGCATGTGAAATGTTTATTA+TGG	0.268895	2_3:-8258789	Msa0276070:CDS
TGTCTTCCCATAAGCATTCT+TGG	0.296015	2_3:+8258506	None:intergenic
GTTGTCGGTGAGAGATTTCT+TGG	0.314048	2_3:+8258990	None:intergenic
TAATAAGGAACATTCCCTAT+TGG	0.364276	2_3:+8258587	None:intergenic
GAATTTGGCAAATCAGTAGA+AGG	0.372595	2_3:+8258398	None:intergenic
GTGCCACCTCAGTATGTTGC+AGG	0.380885	2_3:-8258545	Msa0276070:CDS
ATTGGGACACTTTCTCCTCT+TGG	0.382491	2_3:+8258605	None:intergenic
ACAGACATAGGCACATAATA+AGG	0.383573	2_3:+8258572	None:intergenic
AATAAGGAACATTCCCTATT+GGG	0.409436	2_3:+8258588	None:intergenic
CCCGTTGTAAGGAGGTTGAT+TGG	0.412220	2_3:+8258478	None:intergenic
GGAAACATTTGATTTGCAAA+AGG	0.414669	2_3:+8258443	None:intergenic
AGAGGAGAAAGTGTCCCAAT+AGG	0.414868	2_3:-8258602	Msa0276070:CDS
GAAACATTTGATTTGCAAAA+GGG	0.434507	2_3:+8258444	None:intergenic
ACTGTTGATTTCAAAAGTAA+TGG	0.437192	2_3:-8258899	Msa0276070:CDS
ATGGAGCGTGACATATTTAT+GGG	0.438860	2_3:-8258632	Msa0276070:CDS
TCTACTCAGGTAGGATGAAA+AGG	0.455810	2_3:+8259021	None:intergenic
GAGGAGAAAGTGTCCCAATA+GGG	0.464671	2_3:-8258601	Msa0276070:CDS
GGTCCTCCAAGAATGCTTAT+GGG	0.469493	2_3:-8258512	Msa0276070:CDS
CCGTTGTAAGGAGGTTGATT+GGG	0.477387	2_3:+8258479	None:intergenic
CCAATCAACCTCCTTACAAC+GGG	0.477395	2_3:-8258478	Msa0276070:CDS
CATGCCTTAGCAAACAGAAT+AGG	0.486382	2_3:+8258806	None:intergenic
TGGAGCTAGCAACAAGGTCA+TGG	0.501489	2_3:-8258769	Msa0276070:CDS
TCCTAGTTGATATTGTCCCC+AGG	0.509293	2_3:-8258664	Msa0276070:CDS
CCCTGGGGACAATATCAACT+AGG	0.510438	2_3:+8258663	None:intergenic
TGTGATGGATGCCCGTTGTA+AGG	0.514096	2_3:+8258467	None:intergenic
TATGTTGCAGGTCCATCATA+TGG	0.515120	2_3:-8258533	Msa0276070:CDS
AAGATCATGAAAGCAGAAGA+AGG	0.528329	2_3:-8258854	Msa0276070:CDS
GGCACCTATTCTGTTTGCTA+AGG	0.530640	2_3:-8258810	Msa0276070:CDS
CCTAGTTGATATTGTCCCCA+GGG	0.532798	2_3:-8258663	Msa0276070:CDS
CTTGGAGTTGAACTCTACTC+AGG	0.542580	2_3:+8259008	None:intergenic
TGATTTGCAAAAGGGTGTGA+TGG	0.553637	2_3:+8258452	None:intergenic
GCACTTGCAGTGTGAAACAA+AGG	0.556863	2_3:+8259049	None:intergenic
GTAATGGCTTGCCTTTAACA+AGG	0.559756	2_3:-8258883	Msa0276070:CDS
CTTCCCATAAGCATTCTTGG+AGG	0.580142	2_3:+8258509	None:intergenic
GGAGCTAGCAACAAGGTCAT+GGG	0.582315	2_3:-8258768	Msa0276070:CDS
CACTTGCAGTGTGAAACAAA+GGG	0.597437	2_3:+8259050	None:intergenic
CCCAATCAACCTCCTTACAA+CGG	0.599569	2_3:-8258479	Msa0276070:CDS
ATTCTTGGAGGACCATATGA+TGG	0.609961	2_3:+8258521	None:intergenic
GGTGGCACATGAACAGACAT+AGG	0.629233	2_3:+8258560	None:intergenic
GAGTTGAACTCTACTCAGGT+AGG	0.629918	2_3:+8259012	None:intergenic
AAGGTCATGGGCTAATACAG+AGG	0.637560	2_3:-8258756	Msa0276070:CDS
GCAGTGTGAAACAAAGGGCG+AGG	0.647228	2_3:+8259055	None:intergenic
AATTTGGCAAATCAGTAGAA+GGG	0.648246	2_3:+8258399	None:intergenic
GATGGATGCCCGTTGTAAGG+AGG	0.657482	2_3:+8258470	None:intergenic
AGTGAGTATGATATCAGCTG+AGG	0.690629	2_3:-8258831	Msa0276070:CDS
TTATTATGGAGCTAGCAACA+AGG	0.697305	2_3:-8258775	Msa0276070:CDS
ATATTTATGGGTATACCAAG+AGG	0.705278	2_3:-8258620	Msa0276070:CDS
GGACCTGCAACATACTGAGG+TGG	0.712994	2_3:+8258542	None:intergenic
GATGGACCTGCAACATACTG+AGG	0.735823	2_3:+8258539	None:intergenic
AAAGACACAAGTGAACCCAG+AGG	0.809094	2_3:-8259131	Msa0276070:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTCTTGTTGTTTTTGTTGT+CGG	+	chr2_3:8258555-8258574	None:intergenic	25.0%
!!!	ACTGTTGATTTCAAAAGTAA+TGG	-	chr2_3:8258628-8258647	Msa0276070:CDS	25.0%
!	ATCTTCTTAATCCTTGTTAA+AGG	+	chr2_3:8258658-8258677	None:intergenic	25.0%
!!!	GAAACATTTGATTTGCAAAA+GGG	+	chr2_3:8259086-8259105	None:intergenic	25.0%
!!!	ATTCTTGTTGTTTTTGTTGT+CGG	+	chr2_3:8258555-8258574	None:intergenic	25.0%
!!!	ACTGTTGATTTCAAAAGTAA+TGG	-	chr2_3:8258628-8258647	Msa0276070:CDS	25.0%
!	ATCTTCTTAATCCTTGTTAA+AGG	+	chr2_3:8258658-8258677	None:intergenic	25.0%
!!!	GAAACATTTGATTTGCAAAA+GGG	+	chr2_3:8259086-8259105	None:intergenic	25.0%
!!!	TATCATTCCTTTTTTCCTCT+GGG	+	chr2_3:8258414-8258433	None:intergenic	30.0%
!!	TGGTTTGATTGATTTTGTGT+TGG	+	chr2_3:8258439-8258458	None:intergenic	30.0%
	CAAGAATTGCAGAAAAAACT+TGG	-	chr2_3:8258568-8258587	Msa0276070:CDS	30.0%
	GGCATGTGAAATGTTTATTA+TGG	-	chr2_3:8258738-8258757	Msa0276070:CDS	30.0%
	ATATTTATGGGTATACCAAG+AGG	-	chr2_3:8258907-8258926	Msa0276070:CDS	30.0%
	AATAAGGAACATTCCCTATT+GGG	+	chr2_3:8258942-8258961	None:intergenic	30.0%
	TAATAAGGAACATTCCCTAT+TGG	+	chr2_3:8258943-8258962	None:intergenic	30.0%
!!	GGAAACATTTGATTTGCAAA+AGG	+	chr2_3:8259087-8259106	None:intergenic	30.0%
	AATTTGGCAAATCAGTAGAA+GGG	+	chr2_3:8259131-8259150	None:intergenic	30.0%
!!!	TATCATTCCTTTTTTCCTCT+GGG	+	chr2_3:8258414-8258433	None:intergenic	30.0%
!!	TGGTTTGATTGATTTTGTGT+TGG	+	chr2_3:8258439-8258458	None:intergenic	30.0%
	CAAGAATTGCAGAAAAAACT+TGG	-	chr2_3:8258568-8258587	Msa0276070:CDS	30.0%
	GGCATGTGAAATGTTTATTA+TGG	-	chr2_3:8258738-8258757	Msa0276070:CDS	30.0%
	ATATTTATGGGTATACCAAG+AGG	-	chr2_3:8258907-8258926	Msa0276070:CDS	30.0%
	AATAAGGAACATTCCCTATT+GGG	+	chr2_3:8258942-8258961	None:intergenic	30.0%
	TAATAAGGAACATTCCCTAT+TGG	+	chr2_3:8258943-8258962	None:intergenic	30.0%
!!	GGAAACATTTGATTTGCAAA+AGG	+	chr2_3:8259087-8259106	None:intergenic	30.0%
	AATTTGGCAAATCAGTAGAA+GGG	+	chr2_3:8259131-8259150	None:intergenic	30.0%
!!!	GTATCATTCCTTTTTTCCTC+TGG	+	chr2_3:8258415-8258434	None:intergenic	35.0%
!!!	TTCATTTTGTTTTGCCCAGA+AGG	+	chr2_3:8258596-8258615	None:intergenic	35.0%
	AAGATCATGAAAGCAGAAGA+AGG	-	chr2_3:8258673-8258692	Msa0276070:CDS	35.0%
	TTATTATGGAGCTAGCAACA+AGG	-	chr2_3:8258752-8258771	Msa0276070:CDS	35.0%
	AATGGAGCGTGACATATTTA+TGG	-	chr2_3:8258894-8258913	Msa0276070:CDS	35.0%
	ATGGAGCGTGACATATTTAT+GGG	-	chr2_3:8258895-8258914	Msa0276070:CDS	35.0%
	ACAGACATAGGCACATAATA+AGG	+	chr2_3:8258958-8258977	None:intergenic	35.0%
	GAATTTGGCAAATCAGTAGA+AGG	+	chr2_3:8259132-8259151	None:intergenic	35.0%
!!!	GTATCATTCCTTTTTTCCTC+TGG	+	chr2_3:8258415-8258434	None:intergenic	35.0%
!!!	TTCATTTTGTTTTGCCCAGA+AGG	+	chr2_3:8258596-8258615	None:intergenic	35.0%
	AAGATCATGAAAGCAGAAGA+AGG	-	chr2_3:8258673-8258692	Msa0276070:CDS	35.0%
	TTATTATGGAGCTAGCAACA+AGG	-	chr2_3:8258752-8258771	Msa0276070:CDS	35.0%
	AATGGAGCGTGACATATTTA+TGG	-	chr2_3:8258894-8258913	Msa0276070:CDS	35.0%
	ATGGAGCGTGACATATTTAT+GGG	-	chr2_3:8258895-8258914	Msa0276070:CDS	35.0%
	ACAGACATAGGCACATAATA+AGG	+	chr2_3:8258958-8258977	None:intergenic	35.0%
	GAATTTGGCAAATCAGTAGA+AGG	+	chr2_3:8259132-8259151	None:intergenic	35.0%
	AAGTGAACCCAGAGGAAAAA+AGG	-	chr2_3:8258404-8258423	Msa0276070:CDS	40.0%
	CACTTGCAGTGTGAAACAAA+GGG	+	chr2_3:8258480-8258499	None:intergenic	40.0%
	TCTACTCAGGTAGGATGAAA+AGG	+	chr2_3:8258509-8258528	None:intergenic	40.0%
	AGAAAAAACTTGGCACCTTC+TGG	-	chr2_3:8258578-8258597	Msa0276070:CDS	40.0%
	GAAAAAACTTGGCACCTTCT+GGG	-	chr2_3:8258579-8258598	Msa0276070:CDS	40.0%
!	GTAATGGCTTGCCTTTAACA+AGG	-	chr2_3:8258644-8258663	Msa0276070:CDS	40.0%
	AGTGAGTATGATATCAGCTG+AGG	-	chr2_3:8258696-8258715	Msa0276070:CDS	40.0%
	CATGCCTTAGCAAACAGAAT+AGG	+	chr2_3:8258724-8258743	None:intergenic	40.0%
	TATGTTGCAGGTCCATCATA+TGG	-	chr2_3:8258994-8259013	Msa0276070:CDS	40.0%
	ATTCTTGGAGGACCATATGA+TGG	+	chr2_3:8259009-8259028	None:intergenic	40.0%
	TGTCTTCCCATAAGCATTCT+TGG	+	chr2_3:8259024-8259043	None:intergenic	40.0%
!	TGATTTGCAAAAGGGTGTGA+TGG	+	chr2_3:8259078-8259097	None:intergenic	40.0%
!!	AAGGGTCGTTTTCGTTCTTT+GGG	+	chr2_3:8259113-8259132	None:intergenic	40.0%
	AAGTGAACCCAGAGGAAAAA+AGG	-	chr2_3:8258404-8258423	Msa0276070:CDS	40.0%
	CACTTGCAGTGTGAAACAAA+GGG	+	chr2_3:8258480-8258499	None:intergenic	40.0%
	TCTACTCAGGTAGGATGAAA+AGG	+	chr2_3:8258509-8258528	None:intergenic	40.0%
	AGAAAAAACTTGGCACCTTC+TGG	-	chr2_3:8258578-8258597	Msa0276070:CDS	40.0%
	GAAAAAACTTGGCACCTTCT+GGG	-	chr2_3:8258579-8258598	Msa0276070:CDS	40.0%
!	GTAATGGCTTGCCTTTAACA+AGG	-	chr2_3:8258644-8258663	Msa0276070:CDS	40.0%
	AGTGAGTATGATATCAGCTG+AGG	-	chr2_3:8258696-8258715	Msa0276070:CDS	40.0%
	CATGCCTTAGCAAACAGAAT+AGG	+	chr2_3:8258724-8258743	None:intergenic	40.0%
	TATGTTGCAGGTCCATCATA+TGG	-	chr2_3:8258994-8259013	Msa0276070:CDS	40.0%
	ATTCTTGGAGGACCATATGA+TGG	+	chr2_3:8259009-8259028	None:intergenic	40.0%
	TGTCTTCCCATAAGCATTCT+TGG	+	chr2_3:8259024-8259043	None:intergenic	40.0%
!	TGATTTGCAAAAGGGTGTGA+TGG	+	chr2_3:8259078-8259097	None:intergenic	40.0%
!!	AAGGGTCGTTTTCGTTCTTT+GGG	+	chr2_3:8259113-8259132	None:intergenic	40.0%
	AAAGACACAAGTGAACCCAG+AGG	-	chr2_3:8258396-8258415	Msa0276070:CDS	45.0%
	GCACTTGCAGTGTGAAACAA+AGG	+	chr2_3:8258481-8258500	None:intergenic	45.0%
	GAGTTGAACTCTACTCAGGT+AGG	+	chr2_3:8258518-8258537	None:intergenic	45.0%
	CTTGGAGTTGAACTCTACTC+AGG	+	chr2_3:8258522-8258541	None:intergenic	45.0%
	GTTGTCGGTGAGAGATTTCT+TGG	+	chr2_3:8258540-8258559	None:intergenic	45.0%
!	GGCACCTATTCTGTTTGCTA+AGG	-	chr2_3:8258717-8258736	Msa0276070:CDS	45.0%
!	AAGGTCATGGGCTAATACAG+AGG	-	chr2_3:8258771-8258790	Msa0276070:CDS	45.0%
!	TCCTAGTTGATATTGTCCCC+AGG	-	chr2_3:8258863-8258882	Msa0276070:CDS	45.0%
!	CCTAGTTGATATTGTCCCCA+GGG	-	chr2_3:8258864-8258883	Msa0276070:CDS	45.0%
	TGTCCCCAGGGAAAAAACAA+TGG	-	chr2_3:8258876-8258895	Msa0276070:CDS	45.0%
!!!	GCTCCATTGTTTTTTCCCTG+GGG	+	chr2_3:8258882-8258901	None:intergenic	45.0%
!!!	CGCTCCATTGTTTTTTCCCT+GGG	+	chr2_3:8258883-8258902	None:intergenic	45.0%
!!!	ACGCTCCATTGTTTTTTCCC+TGG	+	chr2_3:8258884-8258903	None:intergenic	45.0%
	ATTGGGACACTTTCTCCTCT+TGG	+	chr2_3:8258925-8258944	None:intergenic	45.0%
!!	AGAGGAGAAAGTGTCCCAAT+AGG	-	chr2_3:8258925-8258944	Msa0276070:CDS	45.0%
!!	GAGGAGAAAGTGTCCCAATA+GGG	-	chr2_3:8258926-8258945	Msa0276070:CDS	45.0%
	TGGTCCTCCAAGAATGCTTA+TGG	-	chr2_3:8259014-8259033	Msa0276070:CDS	45.0%
	GGTCCTCCAAGAATGCTTAT+GGG	-	chr2_3:8259015-8259034	Msa0276070:CDS	45.0%
	CTTCCCATAAGCATTCTTGG+AGG	+	chr2_3:8259021-8259040	None:intergenic	45.0%
!	CCGTTGTAAGGAGGTTGATT+GGG	+	chr2_3:8259051-8259070	None:intergenic	45.0%
	CCCAATCAACCTCCTTACAA+CGG	-	chr2_3:8259048-8259067	Msa0276070:CDS	45.0%
	CCAATCAACCTCCTTACAAC+GGG	-	chr2_3:8259049-8259068	Msa0276070:CDS	45.0%
!!!	TCGTTTTCGTTCTTTGGGGT+TGG	+	chr2_3:8259108-8259127	None:intergenic	45.0%
!!	AGGGTCGTTTTCGTTCTTTG+GGG	+	chr2_3:8259112-8259131	None:intergenic	45.0%
!!	GAAGGGTCGTTTTCGTTCTT+TGG	+	chr2_3:8259114-8259133	None:intergenic	45.0%
	AAAGACACAAGTGAACCCAG+AGG	-	chr2_3:8258396-8258415	Msa0276070:CDS	45.0%
	GCACTTGCAGTGTGAAACAA+AGG	+	chr2_3:8258481-8258500	None:intergenic	45.0%
	GAGTTGAACTCTACTCAGGT+AGG	+	chr2_3:8258518-8258537	None:intergenic	45.0%
	CTTGGAGTTGAACTCTACTC+AGG	+	chr2_3:8258522-8258541	None:intergenic	45.0%
	GTTGTCGGTGAGAGATTTCT+TGG	+	chr2_3:8258540-8258559	None:intergenic	45.0%
!	GGCACCTATTCTGTTTGCTA+AGG	-	chr2_3:8258717-8258736	Msa0276070:CDS	45.0%
!	AAGGTCATGGGCTAATACAG+AGG	-	chr2_3:8258771-8258790	Msa0276070:CDS	45.0%
!	TCCTAGTTGATATTGTCCCC+AGG	-	chr2_3:8258863-8258882	Msa0276070:CDS	45.0%
!	CCTAGTTGATATTGTCCCCA+GGG	-	chr2_3:8258864-8258883	Msa0276070:CDS	45.0%
	TGTCCCCAGGGAAAAAACAA+TGG	-	chr2_3:8258876-8258895	Msa0276070:CDS	45.0%
!!!	GCTCCATTGTTTTTTCCCTG+GGG	+	chr2_3:8258882-8258901	None:intergenic	45.0%
!!!	CGCTCCATTGTTTTTTCCCT+GGG	+	chr2_3:8258883-8258902	None:intergenic	45.0%
!!!	ACGCTCCATTGTTTTTTCCC+TGG	+	chr2_3:8258884-8258903	None:intergenic	45.0%
	ATTGGGACACTTTCTCCTCT+TGG	+	chr2_3:8258925-8258944	None:intergenic	45.0%
!!	AGAGGAGAAAGTGTCCCAAT+AGG	-	chr2_3:8258925-8258944	Msa0276070:CDS	45.0%
!!	GAGGAGAAAGTGTCCCAATA+GGG	-	chr2_3:8258926-8258945	Msa0276070:CDS	45.0%
	TGGTCCTCCAAGAATGCTTA+TGG	-	chr2_3:8259014-8259033	Msa0276070:CDS	45.0%
	GGTCCTCCAAGAATGCTTAT+GGG	-	chr2_3:8259015-8259034	Msa0276070:CDS	45.0%
	CTTCCCATAAGCATTCTTGG+AGG	+	chr2_3:8259021-8259040	None:intergenic	45.0%
!	CCGTTGTAAGGAGGTTGATT+GGG	+	chr2_3:8259051-8259070	None:intergenic	45.0%
	CCCAATCAACCTCCTTACAA+CGG	-	chr2_3:8259048-8259067	Msa0276070:CDS	45.0%
	CCAATCAACCTCCTTACAAC+GGG	-	chr2_3:8259049-8259068	Msa0276070:CDS	45.0%
!!!	TCGTTTTCGTTCTTTGGGGT+TGG	+	chr2_3:8259108-8259127	None:intergenic	45.0%
!!	AGGGTCGTTTTCGTTCTTTG+GGG	+	chr2_3:8259112-8259131	None:intergenic	45.0%
!!	GAAGGGTCGTTTTCGTTCTT+TGG	+	chr2_3:8259114-8259133	None:intergenic	45.0%
!!	GGCGAGGCACTGATACTATT+TGG	+	chr2_3:8258459-8258478	None:intergenic	50.0%
	TGGAGCTAGCAACAAGGTCA+TGG	-	chr2_3:8258758-8258777	Msa0276070:CDS	50.0%
	GGAGCTAGCAACAAGGTCAT+GGG	-	chr2_3:8258759-8258778	Msa0276070:CDS	50.0%
	CCCTGGGGACAATATCAACT+AGG	+	chr2_3:8258867-8258886	None:intergenic	50.0%
	GGTGGCACATGAACAGACAT+AGG	+	chr2_3:8258970-8258989	None:intergenic	50.0%
	GATGGACCTGCAACATACTG+AGG	+	chr2_3:8258991-8259010	None:intergenic	50.0%
!	CCCGTTGTAAGGAGGTTGAT+TGG	+	chr2_3:8259052-8259071	None:intergenic	50.0%
!!	TGTGATGGATGCCCGTTGTA+AGG	+	chr2_3:8259063-8259082	None:intergenic	50.0%
!!	GGCGAGGCACTGATACTATT+TGG	+	chr2_3:8258459-8258478	None:intergenic	50.0%
	TGGAGCTAGCAACAAGGTCA+TGG	-	chr2_3:8258758-8258777	Msa0276070:CDS	50.0%
	GGAGCTAGCAACAAGGTCAT+GGG	-	chr2_3:8258759-8258778	Msa0276070:CDS	50.0%
	CCCTGGGGACAATATCAACT+AGG	+	chr2_3:8258867-8258886	None:intergenic	50.0%
	GGTGGCACATGAACAGACAT+AGG	+	chr2_3:8258970-8258989	None:intergenic	50.0%
	GATGGACCTGCAACATACTG+AGG	+	chr2_3:8258991-8259010	None:intergenic	50.0%
!	CCCGTTGTAAGGAGGTTGAT+TGG	+	chr2_3:8259052-8259071	None:intergenic	50.0%
!!	TGTGATGGATGCCCGTTGTA+AGG	+	chr2_3:8259063-8259082	None:intergenic	50.0%
	GCAGTGTGAAACAAAGGGCG+AGG	+	chr2_3:8258475-8258494	None:intergenic	55.0%
	GTGCCACCTCAGTATGTTGC+AGG	-	chr2_3:8258982-8259001	Msa0276070:CDS	55.0%
	GGACCTGCAACATACTGAGG+TGG	+	chr2_3:8258988-8259007	None:intergenic	55.0%
	GATGGATGCCCGTTGTAAGG+AGG	+	chr2_3:8259060-8259079	None:intergenic	55.0%
	GCAGTGTGAAACAAAGGGCG+AGG	+	chr2_3:8258475-8258494	None:intergenic	55.0%
	GTGCCACCTCAGTATGTTGC+AGG	-	chr2_3:8258982-8259001	Msa0276070:CDS	55.0%
	GGACCTGCAACATACTGAGG+TGG	+	chr2_3:8258988-8259007	None:intergenic	55.0%
	GATGGATGCCCGTTGTAAGG+AGG	+	chr2_3:8259060-8259079	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	8258388	8259161	8258388	ID=Msa0276070;Name=Msa0276070
chr2_3	mRNA	8258388	8259161	8258388	ID=Msa0276070-mRNA-1;Parent=Msa0276070;Name=Msa0276070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|257
chr2_3	exon	8258388	8259161	8258388	ID=Msa0276070-mRNA-1:exon:3752;Parent=Msa0276070-mRNA-1
chr2_3	CDS	8258388	8259161	8258388	ID=Msa0276070-mRNA-1:cds;Parent=Msa0276070-mRNA-1

Gene Sequence

>Msa0276070

ATGGATCAAAAGACACAAGTGAACCCAGAGGAAAAAAGGAATGATACACCAACACAAAATCAATCAAACCAAATAGTATCAGTGCCTCGCCCTTTGTTTCACACTGCAAGTGCTTCTGCCTTTTCATCCTACCTGAGTAGAGTTCAACTCCAAGAAATCTCTCACCGACAACAAAAACAACAAGAATTGCAGAAAAAACTTGGCACCTTCTGGGCAAAACAAAATGAAGAAGTTCAGAAGACTGTTGATTTCAAAAGTAATGGCTTGCCTTTAACAAGGATTAAGAAGATCATGAAAGCAGAAGAAGGAGTGAGTATGATATCAGCTGAGGCACCTATTCTGTTTGCTAAGGCATGTGAAATGTTTATTATGGAGCTAGCAACAAGGTCATGGGCTAATACAGAGGTGAACAAAAGAAAGACACTTCAAAAGAGTGACATTGCATCTGCTGTCTCAAGTAATGAAGTGTTTGATTTCCTAGTTGATATTGTCCCCAGGGAAAAAACAATGGAGCGTGACATATTTATGGGTATACCAAGAGGAGAAAGTGTCCCAATAGGGAATGTTCCTTATTATGTGCCTATGTCTGTTCATGTGCCACCTCAGTATGTTGCAGGTCCATCATATGGTCCTCCAAGAATGCTTATGGGAAGACATCTTCCCAATCAACCTCCTTACAACGGGCATCCATCACACCCTTTTGCAAATCAAATGTTTCCAACCCCAAAGAACGAAAACGACCCTTCTACTGATTTGCCAAATTCAGAAGATTAA

Protein sequence

>Msa0276070

MDQKTQVNPEEKRNDTPTQNQSNQIVSVPRPLFHTASASAFSSYLSRVQLQEISHRQQKQQELQKKLGTFWAKQNEEVQKTVDFKSNGLPLTRIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANTEVNKRKTLQKSDIASAVSSNEVFDFLVDIVPREKTMERDIFMGIPRGESVPIGNVPYYVPMSVHVPPQYVAGPSYGPPRMLMGRHLPNQPPYNGHPSHPFANQMFPTPKNENDPSTDLPNSED*