AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276300 MtrunA17_Chr5g0415031 76.364 110 18 2 30 131 10 119 5.77e-48 164
Msa0276300 MtrunA17_Chr8g0364231 62.857 105 31 2 35 131 14 118 2.21e-35 128
Msa0276300 MtrunA17_Chr6g0452001 69.412 85 18 2 55 131 56 140 8.72e-30 112
Msa0276300 MtrunA17_Chr1g0206771 56.098 82 35 1 41 122 3 83 3.35e-25 94.4
Msa0276300 MtrunA17_Chr1g0206771 50.746 67 33 0 57 123 97 163 1.15e-16 72.0
Msa0276300 MtrunA17_Chr1g0205811 64.706 68 24 0 63 130 22 89 4.67e-25 92.0
Msa0276300 MtrunA17_Chr1g0206781 62.500 64 24 0 67 130 23 86 4.96e-25 92.0
Msa0276300 MtrunA17_Chr6g0452021 62.651 83 23 2 56 131 37 118 6.30e-25 98.2
Msa0276300 MtrunA17_Chr4g0075971 61.194 67 26 0 61 127 178 244 6.68e-22 90.1
Msa0276300 MtrunA17_Chr4g0075971 51.667 60 29 0 71 130 25 84 4.83e-15 70.5
Msa0276300 MtrunA17_Chr4g0075971 42.308 78 45 0 47 124 81 158 5.60e-12 61.6
Msa0276300 MtrunA17_Chr8g0364021 48.837 86 37 1 52 130 34 119 1.19e-21 86.3
Msa0276300 MtrunA17_Chr1g0156171 88.372 43 5 0 85 127 17 59 2.79e-21 82.4
Msa0276300 MtrunA17_Chr4g0075861 48.889 90 41 1 43 127 155 244 3.33e-21 87.4
Msa0276300 MtrunA17_Chr4g0075861 51.667 60 29 0 71 130 25 84 4.02e-14 67.4
Msa0276300 MtrunA17_Chr4g0075861 44.156 77 43 0 47 123 81 157 1.87e-13 65.5
Msa0276300 MtrunA17_Chr3g0077861 65.079 63 21 1 63 124 98 160 2.56e-20 81.3
Msa0276300 MtrunA17_Chr3g0077861 46.575 73 35 1 56 124 2 74 4.15e-12 60.1
Msa0276300 MtrunA17_Chr7g0218911 52.239 67 32 0 58 124 1 67 3.29e-20 79.7
Msa0276300 MtrunA17_Chr1g0205821 47.619 84 42 1 46 129 6 87 5.18e-20 80.9
Msa0276300 MtrunA17_Chr1g0205821 38.298 94 57 1 34 127 79 171 4.41e-17 73.2
Msa0276300 MtrunA17_Chr3g0077911 65.079 63 21 1 63 124 98 160 5.97e-20 80.1
Msa0276300 MtrunA17_Chr3g0077911 54.386 57 26 0 68 124 18 74 1.22e-13 63.9
Msa0276300 MtrunA17_Chr3g0077891 51.220 82 32 2 52 125 89 170 1.34e-19 79.7
Msa0276300 MtrunA17_Chr3g0077891 57.143 56 24 0 69 124 23 78 8.89e-14 64.3
Msa0276300 MtrunA17_Chr1g0205861 50.704 71 27 1 55 117 8 78 7.53e-18 73.6
Msa0276300 MtrunA17_Chr1g0209201 48.649 74 33 2 62 131 23 95 8.70e-17 71.6
Msa0276300 MtrunA17_Chr3g0077941 50.649 77 30 2 55 123 91 167 1.04e-16 72.0
Msa0276300 MtrunA17_Chr3g0077941 55.357 56 25 0 69 124 23 78 3.26e-13 63.2
Msa0276300 MtrunA17_Chr1g0205801 44.928 69 38 0 62 130 19 87 1.66e-16 70.1
Msa0276300 MtrunA17_Chr1g0205831 49.254 67 34 0 60 126 7 73 9.97e-16 69.7
Msa0276300 MtrunA17_Chr1g0205831 47.826 69 35 1 63 130 81 149 6.41e-14 65.1
Msa0276300 MtrunA17_Chr3g0077881 48.750 80 33 2 52 123 89 168 1.63e-15 68.9
Msa0276300 MtrunA17_Chr3g0077881 57.143 56 24 0 69 124 23 78 6.69e-14 64.7
Msa0276300 MtrunA17_Chr2g0328701 50.000 60 30 0 71 130 42 101 4.84e-15 66.6
Msa0276300 MtrunA17_Chr3g0077811 58.929 56 23 0 69 124 28 83 6.61e-15 66.2
Msa0276300 MtrunA17_Chr7g0218891 45.161 62 34 0 69 130 201 262 3.70e-13 64.3
Msa0276300 MtrunA17_Chr7g0218891 43.836 73 39 1 60 130 104 176 3.75e-12 61.6
Msa0276300 MtrunA17_Chr7g0218891 43.939 66 35 1 61 124 19 84 2.47e-11 59.3
Msa0276300 MtrunA17_Chr7g0256011 49.123 57 29 0 67 123 28 84 7.72e-13 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276300 AT1G70060.2 73.810 84 15 1 55 131 7 90 9.11e-33 121
Msa0276300 AT1G70060.1 73.810 84 15 1 55 131 7 90 9.11e-33 121
Msa0276300 AT1G24190.3 70.238 84 18 1 55 131 7 90 4.49e-31 116
Msa0276300 AT1G24190.2 70.238 84 18 1 55 131 7 90 4.80e-31 116
Msa0276300 AT1G24190.1 70.238 84 18 1 55 131 7 90 4.95e-31 116
Msa0276300 AT3G01320.1 69.048 84 19 1 53 129 48 131 2.98e-30 114
Msa0276300 AT3G01320.2 69.048 84 19 1 53 129 48 131 3.04e-30 114
Msa0276300 AT1G59890.4 76.812 69 16 0 63 131 53 121 1.08e-29 112
Msa0276300 AT1G59890.1 76.812 69 16 0 63 131 53 121 1.10e-29 112
Msa0276300 AT1G59890.2 76.812 69 16 0 63 131 53 121 1.14e-29 112
Msa0276300 AT1G59890.3 76.812 69 16 0 63 131 53 121 1.15e-29 112
Msa0276300 AT1G10450.3 72.464 69 19 0 63 131 92 160 6.63e-29 110
Msa0276300 AT1G10450.2 72.464 69 19 0 63 131 41 109 6.67e-29 110
Msa0276300 AT1G10450.1 72.464 69 19 0 63 131 41 109 6.67e-29 110
Msa0276300 AT5G15020.1 68.421 76 17 1 56 124 46 121 2.33e-27 105
Msa0276300 AT5G15020.2 68.421 76 17 1 56 124 46 121 2.35e-27 105
Msa0276300 AT5G15025.1 47.321 112 48 3 27 129 12 121 8.19e-24 89.4
Msa0276300 AT1G70030.3 55.844 77 27 1 56 125 16 92 3.27e-21 82.8
Msa0276300 AT1G70030.2 55.844 77 27 1 56 125 16 92 8.57e-21 82.0
Msa0276300 AT1G70030.1 55.844 77 27 1 56 125 5 81 1.41e-20 82.0
Msa0276300 AT4G12020.3 59.420 69 27 1 63 131 316 383 1.52e-18 80.9
Msa0276300 AT4G12020.2 59.420 69 27 1 63 131 316 383 1.52e-18 80.9
Msa0276300 AT4G12020.7 59.420 69 27 1 63 131 316 383 1.53e-18 80.9
Msa0276300 AT4G12020.4 59.420 69 27 1 63 131 316 383 1.53e-18 80.9
Msa0276300 AT4G12020.10 59.420 69 27 1 63 131 316 383 1.56e-18 80.9
Msa0276300 AT4G12020.5 59.420 69 27 1 63 131 249 316 1.58e-18 80.9
Msa0276300 AT4G12020.11 59.420 69 27 1 63 131 316 383 1.58e-18 80.9
Msa0276300 AT4G12020.1 59.420 69 27 1 63 131 316 383 1.59e-18 80.9
Msa0276300 AT4G12020.9 59.420 69 27 1 63 131 316 383 1.59e-18 80.9
Msa0276300 AT4G12020.6 59.420 69 27 1 63 131 316 383 1.65e-18 80.9
Msa0276300 AT4G12020.8 59.420 69 27 1 63 131 316 383 1.65e-18 80.9
Msa0276300 AT1G24200.1 48.810 84 33 2 55 131 7 87 1.77e-18 77.4
Msa0276300 AT1G27220.1 55.738 61 27 0 63 123 22 82 7.11e-18 75.9
Msa0276300 AT1G27250.1 44.578 83 45 1 41 122 6 88 1.14e-17 73.9
Msa0276300 AT5G15040.1 47.619 63 33 0 62 124 10 72 1.80e-15 67.0
Msa0276300 AT5G15040.3 47.619 63 33 0 62 124 10 72 1.80e-15 67.0
Msa0276300 AT5G15040.2 47.619 63 33 0 62 124 10 72 1.80e-15 67.0
Msa0276300 AT5G35610.1 55.000 60 27 0 63 122 18 77 3.14e-14 65.5
Msa0276300 AT1G24230.1 40.299 67 40 0 63 129 94 160 3.74e-12 61.6
Msa0276300 AT1G24230.1 46.552 58 30 1 61 117 20 77 8.66e-11 57.8
Msa0276300 AT1G23810.1 48.148 54 28 0 63 116 117 170 2.39e-11 59.3
Msa0276300 AT1G24250.1 50.000 54 27 0 63 116 128 181 3.08e-11 59.3

Find 104 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATTGTATGCAAATA+TGG 0.177819 2_3:-8562237 None:intergenic
TCATGTTTACAAGTCATTTC+TGG 0.210390 2_3:+8560748 Msa0276300:three_prime_UTR
ATGTTAAGTAACAAACATTT+TGG 0.219851 2_3:-8563411 None:intergenic
AAGCTTCTTCTTACCGAATA+TGG 0.221899 2_3:-8562050 None:intergenic
ATTGATGTGCCTTCATATTC+AGG 0.226307 2_3:+8562999 Msa0276300:three_prime_UTR
ATCTGATATACCATCAAATT+CGG 0.282664 2_3:+8563197 Msa0276300:three_prime_UTR
ACTTGATTTCTTTCACAAAA+AGG 0.305474 2_3:-8562359 None:intergenic
CCTCTTTGCAAGAGTTAGAT+AGG 0.314175 2_3:+8562117 Msa0276300:three_prime_UTR
TATAAACTTCCCGAATTTGA+TGG 0.319912 2_3:-8563207 None:intergenic
CCTTTGTCTAATATTTCTAA+TGG 0.326976 2_3:+8562143 Msa0276300:three_prime_UTR
AGCAATTGACCAAGTTGTTC+GGG 0.337050 2_3:+8559284 Msa0276300:five_prime_UTR
CAAAGATTACTTATATATTA+CGG 0.343981 2_3:+8562902 Msa0276300:intron
GCTGATTATGTGGCTATGTT+TGG 0.359286 2_3:+8563290 Msa0276300:three_prime_UTR
GAATGTGCCTTCTTATTTGA+AGG 0.371628 2_3:+8559469 Msa0276300:CDS
TGAGATTACCCTTTCGTTTG+AGG 0.374979 2_3:+8560536 Msa0276300:CDS
GGAAGATTGGCATTCATAGA+AGG 0.377655 2_3:-8562096 None:intergenic
CCTTTGTCTCGCAGTACTAA+TGG 0.381664 2_3:+8561920 Msa0276300:three_prime_UTR
TGTTCATTTCAGAGGTCATT+TGG 0.383199 2_3:+8562382 Msa0276300:three_prime_UTR
TTCAGAGGTCATTTGGTTCA+TGG 0.385354 2_3:+8562389 Msa0276300:three_prime_UTR
GGTTCGTCATTCACAGTGAT+TGG 0.392273 2_3:-8562954 None:intergenic
AAGCAATTGACCAAGTTGTT+CGG 0.394439 2_3:+8559283 Msa0276300:five_prime_UTR
GGTTCCTTCGCCACCATGAT+TGG 0.396981 2_3:+8558699 Msa0276300:five_prime_UTR
ATCATCCCACACACCATATT+CGG 0.400509 2_3:+8562037 Msa0276300:three_prime_UTR
AGCGGGCTTGATTCTCATAA+TGG 0.402199 2_3:-8563270 None:intergenic
TTAATCAAACCTGAGATTGT+TGG 0.415082 2_3:-8560071 None:intergenic
ATCTCGATTCGGCGGTTGCC+CGG 0.418989 2_3:-8560219 None:intergenic
ATGTTTGACATTGCAACATA+AGG 0.419389 2_3:-8559337 None:intergenic
TAAGATCAAGTTTCAAGGTC+CGG 0.429714 2_3:+8560200 Msa0276300:intron
TTATTAAGAAGGCTCCAAAA+AGG 0.433515 2_3:+8561828 Msa0276300:intron
GAGTTAGGTGAACACGATAA+AGG 0.436707 2_3:+8560605 Msa0276300:three_prime_UTR
ACTCTTGCAAAGAGGAAGAT+TGG 0.441241 2_3:-8562109 None:intergenic
AATTTGAAAGGCAGTAAAAT+CGG 0.443501 2_3:+8562198 Msa0276300:three_prime_UTR
TAGATGCTCATGCGAGTGTC+AGG 0.444980 2_3:+8559260 Msa0276300:intron
TTCTCTAAGATCAAGTTTCA+AGG 0.445375 2_3:+8560195 Msa0276300:intron
CGAAATTATCTTCGCATACC+TGG 0.448513 2_3:-8563170 None:intergenic
TCTGATATACCATCAAATTC+GGG 0.450281 2_3:+8563198 Msa0276300:three_prime_UTR
AGGGTAATCTCATGGCCCTT+TGG 0.454966 2_3:-8560525 None:intergenic
CGTTCATTGTATGCAAATAT+GGG 0.464020 2_3:-8562236 None:intergenic
ATTGTATGCAAATATGGGCC+TGG 0.465098 2_3:-8562231 None:intergenic
TCAGAGGTCATTTGGTTCAT+GGG 0.465133 2_3:+8562390 Msa0276300:three_prime_UTR
ATTAACATGCCAACAATCTC+AGG 0.465297 2_3:+8560062 Msa0276300:CDS
GGTCATAGAGACTTGATCTT+GGG 0.467943 2_3:+8560486 Msa0276300:CDS
ACGATCTATATTGAGACAAC+TGG 0.469968 2_3:-8563244 None:intergenic
CTCATGGCCCTTTGGCAGAA+AGG 0.476655 2_3:-8560517 None:intergenic
AACGCTGTGTGTCCTTGAAC+AGG 0.487672 2_3:-8562444 None:intergenic
GAGAGCTTCCCCGAACAACT+TGG 0.487981 2_3:-8559293 None:intergenic
AACAATACCTTCAAATAAGA+AGG 0.490879 2_3:-8559476 None:intergenic
AATCAAGTTGTTCATTTCAG+AGG 0.498603 2_3:+8562374 Msa0276300:three_prime_UTR
AATCTGACATAAGAAGGAAA+TGG 0.498845 2_3:+8558674 Msa0276300:five_prime_UTR
AATCAAGCCCGCTGATTATG+TGG 0.500684 2_3:+8563280 Msa0276300:three_prime_UTR
CTGCCGCAATTGAATTTGAA+AGG 0.501797 2_3:+8562186 Msa0276300:three_prime_UTR
ACCTGGTCATGAACAATGCC+GGG 0.505161 2_3:-8563153 None:intergenic
AAGATCAAGTTTCAAGGTCC+GGG 0.505302 2_3:+8560201 Msa0276300:intron
ACGGAGTCATTACCTGTTCA+AGG 0.505781 2_3:+8562432 Msa0276300:three_prime_UTR
TTGTATGCAAATATGGGCCT+GGG 0.507064 2_3:-8562230 None:intergenic
TCATAGAAGGGGCTGATGGT+TGG 0.508105 2_3:-8562083 None:intergenic
AGGTCATAGAGACTTGATCT+TGG 0.513611 2_3:+8560485 Msa0276300:CDS
ATCGTGAATCTGACATAAGA+AGG 0.513777 2_3:+8558668 Msa0276300:five_prime_UTR
GCTGATGGAGCTGTGGACTT+CGG 0.515082 2_3:+8559441 Msa0276300:exon
CTAATGGTAATCAGAAATGC+TGG 0.519576 2_3:+8562159 Msa0276300:three_prime_UTR
TACCTGGTCATGAACAATGC+CGG 0.520481 2_3:-8563154 None:intergenic
TTCTTACCGAATATGGTGTG+TGG 0.522091 2_3:-8562043 None:intergenic
TTTAACACCTTTCTGCCAAA+GGG 0.527079 2_3:+8560510 Msa0276300:CDS
AGATAAGAAGGAAAAGTATG+AGG 0.539361 2_3:+8560283 Msa0276300:CDS
ATTTAACACCTTTCTGCCAA+AGG 0.543196 2_3:+8560509 Msa0276300:CDS
TATGATAATGCACATGCTCC+CGG 0.543343 2_3:+8563135 Msa0276300:three_prime_UTR
ACATCCAATCATGGTGGCGA+AGG 0.554046 2_3:-8558703 None:intergenic
TACAACTATAAGAACAGCTA+AGG 0.555193 2_3:-8562295 None:intergenic
ATAAACCAACCTGAATATGA+AGG 0.555545 2_3:-8563008 None:intergenic
TCCCGGCATTGTTCATGACC+AGG 0.556625 2_3:+8563152 Msa0276300:three_prime_UTR
GAAGATTGGCATTCATAGAA+GGG 0.557607 2_3:-8562095 None:intergenic
ATCACCCTGGTCTACAAAAG+AGG 0.559172 2_3:+8560806 Msa0276300:three_prime_UTR
TTGCTCATCCTCAAACGAAA+GGG 0.562334 2_3:-8560544 None:intergenic
AACATAGCCACATAATCAGC+GGG 0.563480 2_3:-8563287 None:intergenic
CATATTGAATACGTACAGAA+AGG 0.566699 2_3:+8560772 Msa0276300:three_prime_UTR
GCATTCATAGAAGGGGCTGA+TGG 0.568861 2_3:-8562087 None:intergenic
GCATTTCTGACATCCAATCA+TGG 0.574289 2_3:-8558712 None:intergenic
GTTGCTCATCCTCAAACGAA+AGG 0.576022 2_3:-8560545 None:intergenic
ACTGACTACTAATGATGTCA+AGG 0.576783 2_3:+8560250 Msa0276300:CDS
CCTATCTAACTCTTGCAAAG+AGG 0.581812 2_3:-8562117 None:intergenic
CAAACGAAAGGGTAATCTCA+TGG 0.582303 2_3:-8560533 None:intergenic
TTCAGGGATTGATTCTAATG+TGG 0.588863 2_3:+8560001 Msa0276300:intron
AACAATCGAAATTGTTACGA+AGG 0.590977 2_3:-8563341 None:intergenic
TGTTCGAAATTAGCCTCACA+TGG 0.592608 2_3:-8562975 None:intergenic
CAATGATGGTGATACATGAC+TGG 0.593831 2_3:+8558621 Msa0276300:five_prime_UTR
AAAATCGGAAAGCAATTCCC+AGG 0.598355 2_3:+8562213 Msa0276300:three_prime_UTR
CCATTAGTACTGCGAGACAA+AGG 0.601112 2_3:-8561920 None:intergenic
CTGCCTTTCAAATTCAATTG+CGG 0.611889 2_3:-8562189 None:intergenic
TGCACCGCTTAACACTCCAT+TGG 0.612097 2_3:+8558751 Msa0276300:five_prime_UTR
GGGCAACCGCCGAATCGAGA+TGG 0.613865 2_3:+8560221 Msa0276300:CDS
TCTTACCGAATATGGTGTGT+GGG 0.613886 2_3:-8562042 None:intergenic
GTTACCAATGGAGTGTTAAG+CGG 0.623464 2_3:-8558755 None:intergenic
TGATGAACTTACTTATCACA+TGG 0.627391 2_3:-8559094 None:intergenic
TGACATAAGAAGGAAATGGA+TGG 0.629635 2_3:+8558678 Msa0276300:five_prime_UTR
ATTTGTAGAGTTGATACTGA+TGG 0.633224 2_3:+8560432 Msa0276300:intron
AAGATTGGCATTCATAGAAG+GGG 0.643466 2_3:-8562094 None:intergenic
GGAAAGTAAGCCTATCACCC+TGG 0.646683 2_3:+8560793 Msa0276300:three_prime_UTR
CCATTAGAAATATTAGACAA+AGG 0.665835 2_3:-8562143 None:intergenic
AAACATAGCCACATAATCAG+CGG 0.677195 2_3:-8563288 None:intergenic
AAATACACTCTACAAAACAA+CGG 0.677761 2_3:+8562413 Msa0276300:three_prime_UTR
GCAATTGACCAAGTTGTTCG+GGG 0.683663 2_3:+8559285 Msa0276300:five_prime_UTR
TGGTGTCATTGAAAGAGTGA+AGG 0.685356 2_3:+8560452 Msa0276300:CDS
TGTGAATGACGAACCATGTG+AGG 0.703075 2_3:+8562962 Msa0276300:three_prime_UTR
TTTCTGACATCCAATCATGG+TGG 0.753786 2_3:-8558709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTTATGTATATAT+TGG + chr2_3:8559234-8559253 Msa0276300:intron 10.0%
!! ATAAATTGTAAATCAAAAAA+TGG - chr2_3:8561967-8561986 None:intergenic 10.0%
!!! ATGGTGTTTTTTTTTTTTTT+TGG + chr2_3:8559195-8559214 Msa0276300:intron 15.0%
!!! GTTGTTTTTGTATATATATT+GGG + chr2_3:8560357-8560376 Msa0276300:intron 15.0%
!!! AAGATCAAAGAAAATTATTT+TGG + chr2_3:8561462-8561481 Msa0276300:intron 15.0%
!! ATTTAACACTATTATTAAGA+AGG + chr2_3:8561817-8561836 Msa0276300:intron 15.0%
!! ATTTATTTCAAAGATGTTTA+TGG + chr2_3:8561981-8562000 Msa0276300:intron 15.0%
!!! ACGTTTTATAAAAGAATATA+TGG - chr2_3:8562735-8562754 None:intergenic 15.0%
!! AATATATAAGTAATCTTTGA+AGG - chr2_3:8562901-8562920 None:intergenic 15.0%
!! CAAAGATTACTTATATATTA+CGG + chr2_3:8562902-8562921 Msa0276300:intron 15.0%
!! TTTAGTTGATTATATGTTCT+TGG + chr2_3:8558812-8558831 Msa0276300:intron 20.0%
!! TATATTGTTGTAGAATACAT+TGG + chr2_3:8558923-8558942 Msa0276300:intron 20.0%
!! ATGTGAAATGAAATAAATGA+TGG + chr2_3:8559176-8559195 Msa0276300:intron 20.0%
!! AAGAGCAAATATTAGTTATA+TGG + chr2_3:8559563-8559582 Msa0276300:intron 20.0%
!! ATATTGCTTTCATGTATTAT+AGG - chr2_3:8559773-8559792 None:intergenic 20.0%
!!! GGTAATTTTAAATCTTATAG+CGG - chr2_3:8559819-8559838 None:intergenic 20.0%
!! ATGAATTTGAACATAAACTT+TGG - chr2_3:8559840-8559859 None:intergenic 20.0%
!! TAAATAAGAACAACTACATT+AGG - chr2_3:8559905-8559924 None:intergenic 20.0%
!!! CATAAACTTTTGATATTTGA+AGG + chr2_3:8559937-8559956 Msa0276300:intron 20.0%
!!! TTAGTGATTTTATTAAAGCT+TGG + chr2_3:8559965-8559984 Msa0276300:intron 20.0%
!! ATATATATACAAAAACAACG+TGG - chr2_3:8560356-8560375 None:intergenic 20.0%
!!! CGTTGTTTTTGTATATATAT+TGG + chr2_3:8560356-8560375 Msa0276300:intron 20.0%
!!! AATTGATTTGTTTATCCTTT+TGG + chr2_3:8560406-8560425 Msa0276300:intron 20.0%
!!! TTAATAGTTTTAGTTTTGAG+CGG + chr2_3:8560686-8560705 Msa0276300:intron 20.0%
!! CAAACTATAAATTTCGTTTA+TGG - chr2_3:8561301-8561320 None:intergenic 20.0%
!!! TTTATAGTTTGTGTGTTATA+TGG + chr2_3:8561310-8561329 Msa0276300:intron 20.0%
!! TGGTAATAATTCTTGATTTA+TGG + chr2_3:8561482-8561501 Msa0276300:intron 20.0%
!! TACACATAAGTTTATATCTT+TGG + chr2_3:8561557-8561576 Msa0276300:intron 20.0%
!! AATAATAGTGTTAAATCAGA+TGG - chr2_3:8561813-8561832 None:intergenic 20.0%
!! TGTAAATCATTTATCCAATA+AGG - chr2_3:8562561-8562580 None:intergenic 20.0%
!!! TGCATATAGAAAATACTTTT+TGG + chr2_3:8562780-8562799 Msa0276300:intron 20.0%
!! TTACTATTCATCATCTATAT+AGG + chr2_3:8563108-8563127 Msa0276300:intron 20.0%
!! TACTATTCATCATCTATATA+GGG + chr2_3:8563109-8563128 Msa0276300:intron 20.0%
!!! ATGTTAAGTAACAAACATTT+TGG - chr2_3:8563414-8563433 None:intergenic 20.0%
! GAAAAGAAAAAACACAATGA+TGG + chr2_3:8558607-8558626 Msa0276300:five_prime_UTR 25.0%
! AATATGAGAATTGAAAGAGA+TGG - chr2_3:8558785-8558804 None:intergenic 25.0%
! ATCAAAAATTTGTCATCACT+GGG - chr2_3:8558887-8558906 None:intergenic 25.0%
! AATCAAAAATTTGTCATCAC+TGG - chr2_3:8558888-8558907 None:intergenic 25.0%
!! GGATTGTTATTAATTCTGTT+TGG + chr2_3:8558944-8558963 Msa0276300:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG + chr2_3:8558993-8559012 Msa0276300:intron 25.0%
!!! GCTTTGTTAAACAGTTTTAT+AGG + chr2_3:8559040-8559059 Msa0276300:intron 25.0%
!! ACAAAAATCACCATCATTTT+CGG - chr2_3:8559222-8559241 None:intergenic 25.0%
!! TATTTACAGATTTTTGCTGA+TGG + chr2_3:8559426-8559445 Msa0276300:exon 25.0%
! AACAATACCTTCAAATAAGA+AGG - chr2_3:8559479-8559498 None:intergenic 25.0%
! TTGGACTTTATATATGTTTC+AGG + chr2_3:8559984-8560003 Msa0276300:intron 25.0%
! TGGACTTTATATATGTTTCA+GGG + chr2_3:8559985-8560004 Msa0276300:intron 25.0%
!!! GGATATTTTTCAAGATAAGA+AGG + chr2_3:8560271-8560290 Msa0276300:CDS 25.0%
!!! TGAAAGATTTTAAAGCACAA+AGG + chr2_3:8560321-8560340 Msa0276300:CDS 25.0%
!! TTTTGTATATATATTGGGAG+AGG + chr2_3:8560362-8560381 Msa0276300:intron 25.0%
! TTTGTATATATATTGGGAGA+GGG + chr2_3:8560363-8560382 Msa0276300:intron 25.0%
!!! TCAACCTTCTTTTTTAGTTA+AGG - chr2_3:8560570-8560589 None:intergenic 25.0%
!! ATTTTATGAAGCTATGAGTT+AGG + chr2_3:8560590-8560609 Msa0276300:three_prime_UTR 25.0%
! TAGAATGTTTGTGAGTTTAA+TGG + chr2_3:8560629-8560648 Msa0276300:intron 25.0%
! TACACATAAGTGTATTTGTA+CGG + chr2_3:8560909-8560928 Msa0276300:intron 25.0%
! TACAATAAAATCTGTAGCTT+TGG + chr2_3:8561069-8561088 Msa0276300:intron 25.0%
! TTATTAAAAGTCGAGCAAAA+GGG - chr2_3:8561157-8561176 None:intergenic 25.0%
! ATTATTAAAAGTCGAGCAAA+AGG - chr2_3:8561158-8561177 None:intergenic 25.0%
!! GCATAACACTGTTAATTTTA+TGG + chr2_3:8561217-8561236 Msa0276300:intron 25.0%
!! TCTATAGATTTTGCTACATT+TGG + chr2_3:8561340-8561359 Msa0276300:intron 25.0%
! AATCTATATCAGAAAGTCTT+TGG + chr2_3:8561597-8561616 Msa0276300:intron 25.0%
! GTATAATAAAACATGTGAGA+AGG - chr2_3:8561734-8561753 None:intergenic 25.0%
! CCATTAGAAATATTAGACAA+AGG - chr2_3:8562146-8562165 None:intergenic 25.0%
!! CCTTTGTCTAATATTTCTAA+TGG + chr2_3:8562143-8562162 Msa0276300:three_prime_UTR 25.0%
! AATTTGAAAGGCAGTAAAAT+CGG + chr2_3:8562198-8562217 Msa0276300:three_prime_UTR 25.0%
! ACTTGATTTCTTTCACAAAA+AGG - chr2_3:8562362-8562381 None:intergenic 25.0%
! AAATACACTCTACAAAACAA+CGG + chr2_3:8562413-8562432 Msa0276300:three_prime_UTR 25.0%
! ATAAGGAACTTCATTGTTAA+TGG - chr2_3:8562544-8562563 None:intergenic 25.0%
! TTAACAATGAAGTTCCTTAT+TGG + chr2_3:8562544-8562563 Msa0276300:intron 25.0%
! GATAACAATAATGAAGACAA+TGG - chr2_3:8562833-8562852 None:intergenic 25.0%
!!! TTAAGTTCCCATATTTTTGA+AGG - chr2_3:8563087-8563106 None:intergenic 25.0%
! ACTATTCATCATCTATATAG+GGG + chr2_3:8563110-8563129 Msa0276300:intron 25.0%
! ATCTGATATACCATCAAATT+CGG + chr2_3:8563197-8563216 Msa0276300:three_prime_UTR 25.0%
AATCTGACATAAGAAGGAAA+TGG + chr2_3:8558674-8558693 Msa0276300:five_prime_UTR 30.0%
TCAAAAATTTGTCATCACTG+GGG - chr2_3:8558886-8558905 None:intergenic 30.0%
!! AGTTTTATAGGTGTTTATGC+AGG + chr2_3:8559052-8559071 Msa0276300:intron 30.0%
TGATGAACTTACTTATCACA+TGG - chr2_3:8559097-8559116 None:intergenic 30.0%
!!! TTTTTTTGGACCGAAAATGA+TGG + chr2_3:8559209-8559228 Msa0276300:intron 30.0%
ATGTTTGACATTGCAACATA+AGG - chr2_3:8559340-8559359 None:intergenic 30.0%
TTGTTTACTTAATCTGCATC+AGG + chr2_3:8559494-8559513 Msa0276300:intron 30.0%
TTCTTTGTGTTCACATGTAA+AGG + chr2_3:8559533-8559552 Msa0276300:intron 30.0%
TCTTTGTGTTCACATGTAAA+GGG + chr2_3:8559534-8559553 Msa0276300:intron 30.0%
ACACAAATCATGTGATTGTT+AGG + chr2_3:8559614-8559633 Msa0276300:intron 30.0%
! TCTCAATAGCATTTCAAGTA+AGG - chr2_3:8559691-8559710 None:intergenic 30.0%
TTAATCAAACCTGAGATTGT+TGG - chr2_3:8560074-8560093 None:intergenic 30.0%
TCATTTCTTTATTGCTCCTT+CGG - chr2_3:8560119-8560138 None:intergenic 30.0%
!! TTCTCTAAGATCAAGTTTCA+AGG + chr2_3:8560195-8560214 Msa0276300:intron 30.0%
! AGATAAGAAGGAAAAGTATG+AGG + chr2_3:8560283-8560302 Msa0276300:CDS 30.0%
!! ATTTGTAGAGTTGATACTGA+TGG + chr2_3:8560432-8560451 Msa0276300:intron 30.0%
GCAACCTTAACTAAAAAAGA+AGG + chr2_3:8560563-8560582 Msa0276300:exon 30.0%
TCATGTTTACAAGTCATTTC+TGG + chr2_3:8560748-8560767 Msa0276300:three_prime_UTR 30.0%
CATATTGAATACGTACAGAA+AGG + chr2_3:8560772-8560791 Msa0276300:three_prime_UTR 30.0%
GTCAGGAAAATTTGTAATGT+TGG + chr2_3:8560843-8560862 Msa0276300:intron 30.0%
TTGTACGGAATTTGTAATGT+TGG + chr2_3:8560924-8560943 Msa0276300:intron 30.0%
TTTATACAAACCAAGTTTGC+AGG + chr2_3:8560977-8560996 Msa0276300:intron 30.0%
TTATACAAACCAAGTTTGCA+GGG + chr2_3:8560978-8560997 Msa0276300:intron 30.0%
!!! ATTTTAATTCCCTGCAAACT+TGG - chr2_3:8560990-8561009 None:intergenic 30.0%
! CGACTTTTAATAATTGCATC+AGG + chr2_3:8561164-8561183 Msa0276300:intron 30.0%
! AATTTTATGGATCCCATAAG+AGG + chr2_3:8561230-8561249 Msa0276300:intron 30.0%
CAAAATCACTATCCTCTTAT+GGG - chr2_3:8561245-8561264 None:intergenic 30.0%
!!! ATGTCATTTTAGCATGCTAT+TGG + chr2_3:8561436-8561455 Msa0276300:intron 30.0%
AATATAGTTGCTTGTAAACG+TGG - chr2_3:8561512-8561531 None:intergenic 30.0%
! TATATCTTTGGTGTATCTCT+TGG + chr2_3:8561569-8561588 Msa0276300:intron 30.0%
TCTGACATAGTAGTATATGA+TGG - chr2_3:8561638-8561657 None:intergenic 30.0%
ATACTACTATGTCAGAAGTT+TGG + chr2_3:8561642-8561661 Msa0276300:intron 30.0%
TGAAGATTTATAAAGTCAGG+TGG - chr2_3:8561677-8561696 None:intergenic 30.0%
ACCTGACTTTATAAATCTTC+AGG + chr2_3:8561676-8561695 Msa0276300:intron 30.0%
AAATCAGATGGATGAAAAAG+AGG - chr2_3:8561801-8561820 None:intergenic 30.0%
TTATTAAGAAGGCTCCAAAA+AGG + chr2_3:8561828-8561847 Msa0276300:intron 30.0%
! CTCACTACAATCATCATTTT+CGG - chr2_3:8561864-8561883 None:intergenic 30.0%
!! TGAGCTTAGTTTGAACTTTT+TGG + chr2_3:8561880-8561899 Msa0276300:three_prime_UTR 30.0%
CGTTCATTGTATGCAAATAT+GGG - chr2_3:8562239-8562258 None:intergenic 30.0%
TCGTTCATTGTATGCAAATA+TGG - chr2_3:8562240-8562259 None:intergenic 30.0%
TACAACTATAAGAACAGCTA+AGG - chr2_3:8562298-8562317 None:intergenic 30.0%
AAACTGCACACAAAAAAGAT+TGG - chr2_3:8562322-8562341 None:intergenic 30.0%
! AATCAAGTTGTTCATTTCAG+AGG + chr2_3:8562374-8562393 Msa0276300:three_prime_UTR 30.0%
TTACATGCAGTTTCATTTGA+TGG + chr2_3:8562499-8562518 Msa0276300:intron 30.0%
! CTTCATTGTTAATGGATATG+CGG - chr2_3:8562536-8562555 None:intergenic 30.0%
TCAATTGTGCCAATTAATAG+CGG + chr2_3:8562668-8562687 Msa0276300:intron 30.0%
TCAAACATACCGCTATTAAT+TGG - chr2_3:8562680-8562699 None:intergenic 30.0%
ATTGAACATCATAGACACAT+GGG + chr2_3:8562709-8562728 Msa0276300:intron 30.0%
ATAAACCAACCTGAATATGA+AGG - chr2_3:8563011-8563030 None:intergenic 30.0%
TTCACAAGCCTTCAAAAATA+TGG + chr2_3:8563076-8563095 Msa0276300:intron 30.0%
TCACAAGCCTTCAAAAATAT+GGG + chr2_3:8563077-8563096 Msa0276300:intron 30.0%
CTATTCATCATCTATATAGG+GGG + chr2_3:8563111-8563130 Msa0276300:intron 30.0%
TCTGATATACCATCAAATTC+GGG + chr2_3:8563198-8563217 Msa0276300:three_prime_UTR 30.0%
TATAAACTTCCCGAATTTGA+TGG - chr2_3:8563210-8563229 None:intergenic 30.0%
AACAATCGAAATTGTTACGA+AGG - chr2_3:8563344-8563363 None:intergenic 30.0%
ATCGTGAATCTGACATAAGA+AGG + chr2_3:8558668-8558687 Msa0276300:five_prime_UTR 35.0%
TGACATAAGAAGGAAATGGA+TGG + chr2_3:8558678-8558697 Msa0276300:five_prime_UTR 35.0%
AGAGATGGTTATGTTACCAA+TGG - chr2_3:8558770-8558789 None:intergenic 35.0%
TTGGTATGTTATGCTCATGA+GGG + chr2_3:8558831-8558850 Msa0276300:intron 35.0%
AAGCAATTGACCAAGTTGTT+CGG + chr2_3:8559283-8559302 Msa0276300:five_prime_UTR 35.0%
! GAATGTGCCTTCTTATTTGA+AGG + chr2_3:8559469-8559488 Msa0276300:CDS 35.0%
CTTTGTGTTCACATGTAAAG+GGG + chr2_3:8559535-8559554 Msa0276300:intron 35.0%
TTTGTGTTCACATGTAAAGG+GGG + chr2_3:8559536-8559555 Msa0276300:intron 35.0%
TAGAAACGTGCGTATATCTT+AGG + chr2_3:8559717-8559736 Msa0276300:intron 35.0%
AGAAACGTGCGTATATCTTA+GGG + chr2_3:8559718-8559737 Msa0276300:intron 35.0%
! TTCAGGGATTGATTCTAATG+TGG + chr2_3:8560001-8560020 Msa0276300:intron 35.0%
ATTAACATGCCAACAATCTC+AGG + chr2_3:8560062-8560081 Msa0276300:CDS 35.0%
TTGAGCGTGATCTTATCATA+TGG - chr2_3:8560158-8560177 None:intergenic 35.0%
TAAGATCAAGTTTCAAGGTC+CGG + chr2_3:8560200-8560219 Msa0276300:intron 35.0%
! AGTTTTTGACCATCTCGATT+CGG - chr2_3:8560233-8560252 None:intergenic 35.0%
ACTGACTACTAATGATGTCA+AGG + chr2_3:8560250-8560269 Msa0276300:CDS 35.0%
!! GGAAAAGTATGAGGACTTTT+TGG + chr2_3:8560292-8560311 Msa0276300:CDS 35.0%
! AAAGTATGAGGACTTTTTGG+AGG + chr2_3:8560295-8560314 Msa0276300:CDS 35.0%
AACTCTACAAATGCACCAAA+AGG - chr2_3:8560424-8560443 None:intergenic 35.0%
! AGAGTGAAGGAACTTTTTAG+AGG + chr2_3:8560465-8560484 Msa0276300:CDS 35.0%
ATTTAACACCTTTCTGCCAA+AGG + chr2_3:8560509-8560528 Msa0276300:CDS 35.0%
TTTAACACCTTTCTGCCAAA+GGG + chr2_3:8560510-8560529 Msa0276300:CDS 35.0%
!!! AGTTTTAGTTTTGAGCGGAA+TGG + chr2_3:8560691-8560710 Msa0276300:intron 35.0%
TAAAACCGAGTCTGCATAAA+AGG - chr2_3:8560719-8560738 None:intergenic 35.0%
!! TTTTATGCAGACTCGGTTTT+AGG + chr2_3:8560718-8560737 Msa0276300:intron 35.0%
!! TTTATGCAGACTCGGTTTTA+GGG + chr2_3:8560719-8560738 Msa0276300:intron 35.0%
AGGTATGTACTGTTATAGTC+AGG + chr2_3:8560826-8560845 Msa0276300:intron 35.0%
! AGCAATATGTAAAGTTCTGG+AGG - chr2_3:8560885-8560904 None:intergenic 35.0%
CACAGCAATATGTAAAGTTC+TGG - chr2_3:8560888-8560907 None:intergenic 35.0%
ATTGACTGCACACAAGTATA+TGG + chr2_3:8561031-8561050 Msa0276300:intron 35.0%
GCAAAATCACTATCCTCTTA+TGG - chr2_3:8561246-8561265 None:intergenic 35.0%
TACATTTGGCCATAAGTTAG+AGG + chr2_3:8561354-8561373 Msa0276300:intron 35.0%
! CATGGTTTTCCTCTAACTTA+TGG - chr2_3:8561366-8561385 None:intergenic 35.0%
CTTATGTGTAGAGTGTAATC+AGG - chr2_3:8561547-8561566 None:intergenic 35.0%
GCCTGAAGATTTATAAAGTC+AGG - chr2_3:8561680-8561699 None:intergenic 35.0%
GAGAAGGAGAGAAATAAACT+GGG - chr2_3:8561718-8561737 None:intergenic 35.0%
TGAGAAGGAGAGAAATAAAC+TGG - chr2_3:8561719-8561738 None:intergenic 35.0%
! AAAAGAGGTGCATCAAACAT+GGG - chr2_3:8561786-8561805 None:intergenic 35.0%
! AAAAAGAGGTGCATCAAACA+TGG - chr2_3:8561787-8561806 None:intergenic 35.0%
AAGCTTCTTCTTACCGAATA+TGG - chr2_3:8562053-8562072 None:intergenic 35.0%
AAGATTGGCATTCATAGAAG+GGG - chr2_3:8562097-8562116 None:intergenic 35.0%
GAAGATTGGCATTCATAGAA+GGG - chr2_3:8562098-8562117 None:intergenic 35.0%
CTAATGGTAATCAGAAATGC+TGG + chr2_3:8562159-8562178 Msa0276300:three_prime_UTR 35.0%
CTGCCTTTCAAATTCAATTG+CGG - chr2_3:8562192-8562211 None:intergenic 35.0%
TGTTCATTTCAGAGGTCATT+TGG + chr2_3:8562382-8562401 Msa0276300:three_prime_UTR 35.0%
!! ATCAACAGGAACTATTTCTG+CGG - chr2_3:8562479-8562498 None:intergenic 35.0%
GAAACTGCATGTAAATCAAC+AGG - chr2_3:8562493-8562512 None:intergenic 35.0%
CATGTGTCTATGATGTTCAA+TGG - chr2_3:8562710-8562729 None:intergenic 35.0%
CATTGAACATCATAGACACA+TGG + chr2_3:8562708-8562727 Msa0276300:intron 35.0%
ATTGATGTGCCTTCATATTC+AGG + chr2_3:8562999-8563018 Msa0276300:three_prime_UTR 35.0%
ACGATCTATATTGAGACAAC+TGG - chr2_3:8563247-8563266 None:intergenic 35.0%
AAACATAGCCACATAATCAG+CGG - chr2_3:8563291-8563310 None:intergenic 35.0%
! CAATGATGGTGATACATGAC+TGG + chr2_3:8558621-8558640 Msa0276300:five_prime_UTR 40.0%
TTTCTGACATCCAATCATGG+TGG - chr2_3:8558712-8558731 None:intergenic 40.0%
GCATTTCTGACATCCAATCA+TGG - chr2_3:8558715-8558734 None:intergenic 40.0%
! GTTACCAATGGAGTGTTAAG+CGG - chr2_3:8558758-8558777 None:intergenic 40.0%
CTTGGTATGTTATGCTCATG+AGG + chr2_3:8558830-8558849 Msa0276300:intron 40.0%
TGGTATGTTATGCTCATGAG+GGG + chr2_3:8558832-8558851 Msa0276300:intron 40.0%
AGCAATTGACCAAGTTGTTC+GGG + chr2_3:8559284-8559303 Msa0276300:five_prime_UTR 40.0%
TTGTGTTCACATGTAAAGGG+GGG + chr2_3:8559537-8559556 Msa0276300:intron 40.0%
GTTATTATGCGTGTGTCAAC+AGG + chr2_3:8559585-8559604 Msa0276300:intron 40.0%
GAAACGTGCGTATATCTTAG+GGG + chr2_3:8559719-8559738 Msa0276300:intron 40.0%
CAACTACATTAGGTTCTTCG+CGG - chr2_3:8559895-8559914 None:intergenic 40.0%
AAGATCAAGTTTCAAGGTCC+GGG + chr2_3:8560201-8560220 Msa0276300:intron 40.0%
!! TGGTGTCATTGAAAGAGTGA+AGG + chr2_3:8560452-8560471 Msa0276300:CDS 40.0%
AGGTCATAGAGACTTGATCT+TGG + chr2_3:8560485-8560504 Msa0276300:CDS 40.0%
GGTCATAGAGACTTGATCTT+GGG + chr2_3:8560486-8560505 Msa0276300:CDS 40.0%
CAAACGAAAGGGTAATCTCA+TGG - chr2_3:8560536-8560555 None:intergenic 40.0%
TGAGATTACCCTTTCGTTTG+AGG + chr2_3:8560536-8560555 Msa0276300:CDS 40.0%
TTGCTCATCCTCAAACGAAA+GGG - chr2_3:8560547-8560566 None:intergenic 40.0%
GAGTTAGGTGAACACGATAA+AGG + chr2_3:8560605-8560624 Msa0276300:three_prime_UTR 40.0%
! TGGTTCCTTTTATGCAGACT+CGG + chr2_3:8560711-8560730 Msa0276300:intron 40.0%
! CATACCTCTTTTGTAGACCA+GGG - chr2_3:8560813-8560832 None:intergenic 40.0%
! ACATACCTCTTTTGTAGACC+AGG - chr2_3:8560814-8560833 None:intergenic 40.0%
TGTGTGCAGTCAATGTAATG+AGG - chr2_3:8561025-8561044 None:intergenic 40.0%
TGCACACAAGTATATGGCAT+TGG + chr2_3:8561037-8561056 Msa0276300:intron 40.0%
TAAAAGTCGAGCAAAAGGGA+GGG - chr2_3:8561153-8561172 None:intergenic 40.0%
TTAAAAGTCGAGCAAAAGGG+AGG - chr2_3:8561154-8561173 None:intergenic 40.0%
!! AGTCTTATTGCTTGCAAGCA+TGG - chr2_3:8561384-8561403 None:intergenic 40.0%
! TGCAAGCAATAAGACTTGCT+AGG + chr2_3:8561388-8561407 Msa0276300:intron 40.0%
GCATGCTAAAATGACATGTC+TGG - chr2_3:8561433-8561452 None:intergenic 40.0%
! TCGGATGTTCAGATCCTTTT+TGG - chr2_3:8561845-8561864 None:intergenic 40.0%
ATCATCCCACACACCATATT+CGG + chr2_3:8562037-8562056 Msa0276300:three_prime_UTR 40.0%
TCTTACCGAATATGGTGTGT+GGG - chr2_3:8562045-8562064 None:intergenic 40.0%
TTCTTACCGAATATGGTGTG+TGG - chr2_3:8562046-8562065 None:intergenic 40.0%
GGAAGATTGGCATTCATAGA+AGG - chr2_3:8562099-8562118 None:intergenic 40.0%
ACTCTTGCAAAGAGGAAGAT+TGG - chr2_3:8562112-8562131 None:intergenic 40.0%
CCTATCTAACTCTTGCAAAG+AGG - chr2_3:8562120-8562139 None:intergenic 40.0%
CCTCTTTGCAAGAGTTAGAT+AGG + chr2_3:8562117-8562136 Msa0276300:three_prime_UTR 40.0%
CTGCCGCAATTGAATTTGAA+AGG + chr2_3:8562186-8562205 Msa0276300:three_prime_UTR 40.0%
AAAATCGGAAAGCAATTCCC+AGG + chr2_3:8562213-8562232 Msa0276300:three_prime_UTR 40.0%
TTGTATGCAAATATGGGCCT+GGG - chr2_3:8562233-8562252 None:intergenic 40.0%
ATTGTATGCAAATATGGGCC+TGG - chr2_3:8562234-8562253 None:intergenic 40.0%
! TTCAGAGGTCATTTGGTTCA+TGG + chr2_3:8562389-8562408 Msa0276300:three_prime_UTR 40.0%
! TCAGAGGTCATTTGGTTCAT+GGG + chr2_3:8562390-8562409 Msa0276300:three_prime_UTR 40.0%
! TGTTCGAAATTAGCCTCACA+TGG - chr2_3:8562978-8562997 None:intergenic 40.0%
ATGTGCCTTCATATTCAGGT+TGG + chr2_3:8563003-8563022 Msa0276300:intron 40.0%
! TATGATAATGCACATGCTCC+CGG + chr2_3:8563135-8563154 Msa0276300:three_prime_UTR 40.0%
CGAAATTATCTTCGCATACC+TGG - chr2_3:8563173-8563192 None:intergenic 40.0%
AACATAGCCACATAATCAGC+GGG - chr2_3:8563290-8563309 None:intergenic 40.0%
GCTGATTATGTGGCTATGTT+TGG + chr2_3:8563290-8563309 Msa0276300:three_prime_UTR 40.0%
! GAAAAAGTGCAGTGCATGAG+AGG + chr2_3:8558645-8558664 Msa0276300:five_prime_UTR 45.0%
GCAATTGACCAAGTTGTTCG+GGG + chr2_3:8559285-8559304 Msa0276300:five_prime_UTR 45.0%
! GATTTTTGCTGATGGAGCTG+TGG + chr2_3:8559434-8559453 Msa0276300:exon 45.0%
GTGCGTATATCTTAGGGGAA+AGG + chr2_3:8559724-8559743 Msa0276300:intron 45.0%
TTTATTGCTCCTTCGGCTCT+AGG - chr2_3:8560112-8560131 None:intergenic 45.0%
!!! TTTTGACCATCTCGATTCGG+CGG - chr2_3:8560230-8560249 None:intergenic 45.0%
GTTGCTCATCCTCAAACGAA+AGG - chr2_3:8560548-8560567 None:intergenic 45.0%
! CTTTTGTAGACCAGGGTGAT+AGG - chr2_3:8560806-8560825 None:intergenic 45.0%
ATCACCCTGGTCTACAAAAG+AGG + chr2_3:8560806-8560825 Msa0276300:three_prime_UTR 45.0%
TTATGGCAGAGTGCACACAA+AGG - chr2_3:8561284-8561303 None:intergenic 45.0%
AGGTGCATCAAACATGGGAA+TGG - chr2_3:8561781-8561800 None:intergenic 45.0%
CCATTAGTACTGCGAGACAA+AGG - chr2_3:8561923-8561942 None:intergenic 45.0%
CCTTTGTCTCGCAGTACTAA+TGG + chr2_3:8561920-8561939 Msa0276300:three_prime_UTR 45.0%
CGCAGTACTAATGGTAAGTG+CGG + chr2_3:8561929-8561948 Msa0276300:intron 45.0%
TCACAAAAAGGAAGTGAGCG+TGG - chr2_3:8562350-8562369 None:intergenic 45.0%
ACGGAGTCATTACCTGTTCA+AGG + chr2_3:8562432-8562451 Msa0276300:three_prime_UTR 45.0%
CACGCTTCTTATGTGTCGTA+GGG + chr2_3:8562590-8562609 Msa0276300:intron 45.0%
ACGCTTCTTATGTGTCGTAG+GGG + chr2_3:8562591-8562610 Msa0276300:intron 45.0%
GGTTCGTCATTCACAGTGAT+TGG - chr2_3:8562957-8562976 None:intergenic 45.0%
TGTGAATGACGAACCATGTG+AGG + chr2_3:8562962-8562981 Msa0276300:three_prime_UTR 45.0%
TACCTGGTCATGAACAATGC+CGG - chr2_3:8563157-8563176 None:intergenic 45.0%
! AGCGGGCTTGATTCTCATAA+TGG - chr2_3:8563273-8563292 None:intergenic 45.0%
! AATCAAGCCCGCTGATTATG+TGG + chr2_3:8563280-8563299 Msa0276300:three_prime_UTR 45.0%
!! ATAAAAAATTGAATAAATTT+GGG - chr2_3:8559130-8559149 None:intergenic 5.0%
!! AATAAAAAATTGAATAAATT+TGG - chr2_3:8559131-8559150 None:intergenic 5.0%
!!! TTTATTCAATTTTTTATTTT+TGG + chr2_3:8559133-8559152 Msa0276300:intron 5.0%
!!! TTATTCAATTTTTTATTTTT+GGG + chr2_3:8559134-8559153 Msa0276300:intron 5.0%
! ACATCCAATCATGGTGGCGA+AGG - chr2_3:8558706-8558725 None:intergenic 50.0%
TGCACCGCTTAACACTCCAT+TGG + chr2_3:8558751-8558770 Msa0276300:five_prime_UTR 50.0%
TAGATGCTCATGCGAGTGTC+AGG + chr2_3:8559260-8559279 Msa0276300:intron 50.0%
TACTTAGTGCCTAGAGCCGA+AGG + chr2_3:8560100-8560119 Msa0276300:intron 50.0%
GATCACGCTCAACATGACTG+TGG + chr2_3:8560166-8560185 Msa0276300:intron 50.0%
AGGGTAATCTCATGGCCCTT+TGG - chr2_3:8560528-8560547 None:intergenic 50.0%
GGAAAGTAAGCCTATCACCC+TGG + chr2_3:8560793-8560812 Msa0276300:three_prime_UTR 50.0%
TCATAGAAGGGGCTGATGGT+TGG - chr2_3:8562086-8562105 None:intergenic 50.0%
GCATTCATAGAAGGGGCTGA+TGG - chr2_3:8562090-8562109 None:intergenic 50.0%
AACGCTGTGTGTCCTTGAAC+AGG - chr2_3:8562447-8562466 None:intergenic 50.0%
GCACGCTTCTTATGTGTCGT+AGG + chr2_3:8562589-8562608 Msa0276300:intron 50.0%
CGCTTCTTATGTGTCGTAGG+GGG + chr2_3:8562592-8562611 Msa0276300:intron 50.0%
ACCTGGTCATGAACAATGCC+GGG - chr2_3:8563156-8563175 None:intergenic 50.0%
GGTTCCTTCGCCACCATGAT+TGG + chr2_3:8558699-8558718 Msa0276300:five_prime_UTR 55.0%
GAGAGCTTCCCCGAACAACT+TGG - chr2_3:8559296-8559315 None:intergenic 55.0%
GCTGATGGAGCTGTGGACTT+CGG + chr2_3:8559441-8559460 Msa0276300:exon 55.0%
CTCATGGCCCTTTGGCAGAA+AGG - chr2_3:8560520-8560539 None:intergenic 55.0%
GTAGGGGGTGACTGTAGTCT+GGG + chr2_3:8562607-8562626 Msa0276300:intron 55.0%
! GGTGACTGTAGTCTGGGATC+AGG + chr2_3:8562613-8562632 Msa0276300:intron 55.0%
TCCCGGCATTGTTCATGACC+AGG + chr2_3:8563152-8563171 Msa0276300:three_prime_UTR 55.0%
!! ATCTCGATTCGGCGGTTGCC+CGG - chr2_3:8560222-8560241 None:intergenic 60.0%
CGTAGGGGGTGACTGTAGTC+TGG + chr2_3:8562606-8562625 Msa0276300:intron 60.0%
GGGCAACCGCCGAATCGAGA+TGG + chr2_3:8560221-8560240 Msa0276300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8558595 8563439 8558595 ID=Msa0276300;Name=Msa0276300
chr2_3 mRNA 8558595 8563439 8558595 ID=Msa0276300-mRNA-1;Parent=Msa0276300;Name=Msa0276300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=403|0.8|0.81|0.90|0.5|0.36|11|1108|131
chr2_3 exon 8558595 8558772 8558595 ID=Msa0276300-mRNA-1:exon:3813;Parent=Msa0276300-mRNA-1
chr2_3 exon 8559062 8559104 8559062 ID=Msa0276300-mRNA-1:exon:3814;Parent=Msa0276300-mRNA-1
chr2_3 exon 8559263 8559490 8559263 ID=Msa0276300-mRNA-1:exon:3815;Parent=Msa0276300-mRNA-1
chr2_3 exon 8560006 8560083 8560006 ID=Msa0276300-mRNA-1:exon:3816;Parent=Msa0276300-mRNA-1
chr2_3 exon 8560204 8560342 8560204 ID=Msa0276300-mRNA-1:exon:3817;Parent=Msa0276300-mRNA-1
chr2_3 exon 8560440 8560626 8560440 ID=Msa0276300-mRNA-1:exon:3818;Parent=Msa0276300-mRNA-1
chr2_3 exon 8560728 8560827 8560728 ID=Msa0276300-mRNA-1:exon:3819;Parent=Msa0276300-mRNA-1
chr2_3 exon 8561839 8561941 8561839 ID=Msa0276300-mRNA-1:exon:3820;Parent=Msa0276300-mRNA-1
chr2_3 exon 8562027 8562453 8562027 ID=Msa0276300-mRNA-1:exon:3821;Parent=Msa0276300-mRNA-1
chr2_3 exon 8562907 8563020 8562907 ID=Msa0276300-mRNA-1:exon:3822;Parent=Msa0276300-mRNA-1
chr2_3 exon 8563130 8563439 8563130 ID=Msa0276300-mRNA-1:exon:3823;Parent=Msa0276300-mRNA-1
chr2_3 five_prime_UTR 8558595 8558772 8558595 ID=Msa0276300-mRNA-1:five_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 five_prime_UTR 8559062 8559104 8559062 ID=Msa0276300-mRNA-1:five_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 five_prime_UTR 8559263 8559444 8559263 ID=Msa0276300-mRNA-1:five_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 CDS 8559445 8559490 8559445 ID=Msa0276300-mRNA-1:cds;Parent=Msa0276300-mRNA-1
chr2_3 CDS 8560006 8560083 8560006 ID=Msa0276300-mRNA-1:cds;Parent=Msa0276300-mRNA-1
chr2_3 CDS 8560204 8560342 8560204 ID=Msa0276300-mRNA-1:cds;Parent=Msa0276300-mRNA-1
chr2_3 CDS 8560440 8560572 8560440 ID=Msa0276300-mRNA-1:cds;Parent=Msa0276300-mRNA-1
chr2_3 three_prime_UTR 8560573 8560626 8560573 ID=Msa0276300-mRNA-1:three_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 three_prime_UTR 8560728 8560827 8560728 ID=Msa0276300-mRNA-1:three_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 three_prime_UTR 8561839 8561941 8561839 ID=Msa0276300-mRNA-1:three_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 three_prime_UTR 8562027 8562453 8562027 ID=Msa0276300-mRNA-1:three_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 three_prime_UTR 8562907 8563020 8562907 ID=Msa0276300-mRNA-1:three_prime_utr;Parent=Msa0276300-mRNA-1
chr2_3 three_prime_UTR 8563130 8563439 8563130 ID=Msa0276300-mRNA-1:three_prime_utr;Parent=Msa0276300-mRNA-1
Gene Sequence

>Msa0276300

ATGGAGCTGTGGACTTCGGCTATTGAATGTGCCTTCTTATTTGAAGGGATTGATTCTAATGTGGAGTGTGAGAATCTAAATTGTTCAATGAATTGTGAAGACATTAACATGCCAACAATCTCAGATCAAGTTTCAAGGTCCGGGCAACCGCCGAATCGAGATGGTCAAAAACTGACTACTAATGATGTCAAGGATATTTTTCAAGATAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTTTAAAGCACAAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGAGGTCATAGAGACTTGATCTTGGGATTTAACACCTTTCTGCCAAAGGGCCATGAGATTACCCTTTCGTTTGAGGATGAGCAACCTTAA
Protein sequence

>Msa0276300

MELWTSAIECAFLFEGIDSNVECENLNCSMNCEDINMPTISDQVSRSGQPPNRDGQKLTTNDVKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIERVKELFRGHRDLILGFNTFLPKGHEITLSFEDEQP*