AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276510 MtrunA17_Chr2g0289121 72.371 561 141 5 31 588 279 828 0.0 837
Msa0276510 MtrunA17_Chr4g0075261 65.767 593 153 9 31 585 290 870 0.0 759
Msa0276510 MtrunA17_Chr2g0289031 74.815 405 89 3 181 582 2 396 0.0 602
Msa0276510 MtrunA17_Chr1g0183311 48.371 614 248 13 31 579 270 879 4.25e-180 531
Msa0276510 MtrunA17_Chr1g0211711 49.829 586 251 12 31 579 469 1048 2.88e-179 535
Msa0276510 MtrunA17_Chr5g0426961 50.345 580 241 17 32 579 268 832 1.86e-165 492
Msa0276510 MtrunA17_Chr5g0420361 47.059 578 245 16 39 563 210 779 2.81e-157 470
Msa0276510 MtrunA17_Chr1g0211661 46.809 517 232 11 39 522 359 865 4.57e-136 418
Msa0276510 MtrunA17_Chr6g0472441 44.027 586 230 21 39 563 153 701 1.43e-135 412
Msa0276510 MtrunA17_Chr1g0192011 34.684 617 296 11 32 582 388 963 1.27e-118 375
Msa0276510 MtrunA17_Chr1g0211691 44.008 484 230 12 26 472 466 945 2.15e-111 355
Msa0276510 MtrunA17_Chr5g0448301 41.079 482 234 11 39 494 174 631 5.40e-105 330
Msa0276510 MtrunA17_Chr8g0361381 67.925 212 62 2 160 371 3 208 5.40e-102 307
Msa0276510 MtrunA17_Chr7g0275771 40.488 410 198 9 32 401 263 666 1.22e-94 310
Msa0276510 MtrunA17_Chr7g0275771 64.052 153 53 1 431 581 774 926 7.42e-57 206
Msa0276510 MtrunA17_Chr1g0147021 43.377 385 175 8 39 404 1003 1363 1.76e-86 294
Msa0276510 MtrunA17_Chr1g0147021 63.522 159 53 2 419 575 1536 1691 4.47e-55 202
Msa0276510 MtrunA17_Chr2g0281051 31.487 632 342 16 32 581 334 956 3.11e-81 274
Msa0276510 MtrunA17_Chr2g0289091 77.778 135 30 0 260 394 20 154 6.51e-68 226
Msa0276510 MtrunA17_Chr2g0289091 76.027 146 32 2 402 544 275 420 3.04e-67 224
Msa0276510 MtrunA17_Chr2g0289101 72.993 137 35 2 39 174 10 145 2.28e-64 208
Msa0276510 MtrunA17_Chr8g0361391 56.989 186 36 4 405 587 18 162 2.89e-59 194
Msa0276510 MtrunA17_Chr4g0048531 36.156 307 171 4 112 399 718 1018 4.87e-50 187
Msa0276510 MtrunA17_Chr4g0048531 47.403 154 78 2 430 581 1126 1278 2.90e-37 148
Msa0276510 MtrunA17_Chr2g0289041 76.238 101 24 0 31 131 104 204 2.66e-48 167
Msa0276510 MtrunA17_Chr7g0231061 48.521 169 80 1 250 411 12 180 3.57e-45 159
Msa0276510 MtrunA17_Chr1g0211701 66.964 112 35 1 470 579 4 115 2.27e-44 155
Msa0276510 MtrunA17_Chr8g0340381 43.827 162 74 5 281 440 33 179 1.38e-29 115
Msa0276510 MtrunA17_Chr8g0364421 33.014 209 111 6 37 234 27 217 1.12e-23 100
Msa0276510 MtrunA17_Chr1g0211671 55.932 59 26 0 521 579 15 73 1.04e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276510 AT1G11950.1 58.230 565 213 10 31 582 317 871 0.0 660
Msa0276510 AT1G11950.3 58.230 565 213 10 31 582 317 871 0.0 660
Msa0276510 AT1G62310.1 58.554 567 216 9 12 562 314 877 0.0 654
Msa0276510 AT1G11950.2 55.960 495 195 10 31 512 317 801 0.0 547
Msa0276510 AT3G07610.1 43.800 621 272 11 28 578 277 890 1.48e-154 470
Msa0276510 AT4G00990.1 40.090 666 302 14 7 585 180 835 3.14e-149 451
Msa0276510 AT3G07610.3 41.875 640 279 12 28 578 277 912 7.29e-146 448
Msa0276510 AT4G00990.3 38.588 609 277 14 7 528 180 778 4.23e-124 384
Msa0276510 AT4G00990.2 38.935 601 270 14 7 520 180 770 3.00e-123 382
Msa0276510 AT1G09060.2 32.660 594 329 14 32 582 328 893 5.29e-93 306
Msa0276510 AT1G09060.1 32.660 594 329 14 32 582 328 893 5.29e-93 306
Msa0276510 AT1G09060.4 32.660 594 329 14 32 582 342 907 8.56e-93 305
Msa0276510 AT1G09060.3 32.660 594 329 14 32 582 342 907 8.56e-93 305
Msa0276510 AT3G07610.2 37.530 413 188 8 28 372 277 687 1.87e-75 255
Msa0276510 AT4G21430.1 33.864 440 249 10 183 588 490 921 4.40e-68 238

Find 104 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGAAATTGTACTGTTTA+AGG 0.120131 2_3:-8801805 Msa0276510:CDS
AAAAGTTAGATGCATATTTA+AGG 0.171830 2_3:-8799320 Msa0276510:CDS
AGAACATCACAAACTATAAT+TGG 0.201614 2_3:+8800516 None:intergenic
CCACAACCTCCAAGTTCTTT+TGG 0.207866 2_3:+8800771 None:intergenic
TCTCTTGCCTTGTGATTCTT+TGG 0.213845 2_3:+8798712 None:intergenic
CTGTTATTAGAAAATTAAAA+AGG 0.230359 2_3:-8799500 Msa0276510:CDS
AAAAGTATGCCTAAATTCTT+TGG 0.242870 2_3:+8799290 None:intergenic
GAGAGCATTGTGCGCAAATT+TGG 0.252466 2_3:-8800451 Msa0276510:CDS
CAGAAACTGGTGGTGCTCTT+TGG 0.271763 2_3:-8799368 Msa0276510:CDS
ACATGTCATAAAGCCTGATT+TGG 0.301815 2_3:-8799762 Msa0276510:CDS
ATAGACCCCTTGGAGATTAA+TGG 0.305271 2_3:-8799432 Msa0276510:CDS
TTGTGGCTGTGGTTGTGTTA+TGG 0.319953 2_3:-8800754 Msa0276510:CDS
TTGTGCGCAAATTTGGCTTC+AGG 0.324597 2_3:-8800444 Msa0276510:CDS
AGAAACTGGTGGTGCTCTTT+GGG 0.329119 2_3:-8799367 Msa0276510:CDS
GGAAACACTCCAAAGAATTT+AGG 0.337467 2_3:-8799299 Msa0276510:CDS
CACAAAACTTCACTGTGATA+TGG 0.367632 2_3:-8799681 Msa0276510:CDS
CTTCATGATATACTGAGCTT+TGG 0.368964 2_3:+8800686 None:intergenic
AAATCAGATATTCTCCCATT+TGG 0.371858 2_3:+8800714 None:intergenic
ATTGCAATTCTTACAACAAA+AGG 0.390679 2_3:+8801648 None:intergenic
ATCACTATTAGCATTCCATT+TGG 0.401903 2_3:+8800812 None:intergenic
AGGTTTGAGTTGGGAGCCTA+TGG 0.429318 2_3:-8800481 Msa0276510:CDS
TAATATAGTACCTGTTCAAC+TGG 0.429527 2_3:+8799261 None:intergenic
CTGAAACGCATGCTTCCAAA+TGG 0.431339 2_3:-8800729 Msa0276510:CDS
GTTTCGCTATACTCTTGAAA+TGG 0.440886 2_3:+8799824 None:intergenic
GTTGGGAGCCTATGGTTACT+TGG 0.443800 2_3:-8800473 Msa0276510:CDS
TGACCTTGAGATTTCTGACT+TGG 0.453559 2_3:+8798937 None:intergenic
TGGAAGTTGTCGAAACTCTT+CGG 0.459153 2_3:+8798732 None:intergenic
CAAATTCTTCAAAGGTTACA+AGG 0.462776 2_3:-8799963 Msa0276510:CDS
TGCTCAAAAGAAACAGAAAC+TGG 0.463190 2_3:-8799381 Msa0276510:CDS
TGGACATTTGAGCAGAAACT+TGG 0.466489 2_3:-8798993 Msa0276510:CDS
AACAAGGGACAGGTTTGAGT+TGG 0.470587 2_3:-8800491 Msa0276510:CDS
TTATAAGGTCACTTGACAAT+GGG 0.471562 2_3:+8800583 None:intergenic
GCAACTTTGCAGCAAGGTTG+AGG 0.472874 2_3:+8799789 None:intergenic
ACAAGGGACAGGTTTGAGTT+GGG 0.475477 2_3:-8800490 Msa0276510:CDS
CTTCTAATGCTTGTACAGCT+TGG 0.476980 2_3:+8798530 None:intergenic
CCAAAAGAACTTGGAGGTTG+TGG 0.477429 2_3:-8800771 Msa0276510:CDS
TTGAATTTCGAAAGCATTGG+AGG 0.493283 2_3:-8800548 Msa0276510:CDS
TTTCGAAAGCATTGGAGGAA+TGG 0.494705 2_3:-8800543 Msa0276510:CDS
AGTAAAAGCCATCGATTGCT+TGG 0.495169 2_3:-8800397 Msa0276510:CDS
TTGCAATTCTTACAACAAAA+GGG 0.499542 2_3:+8801649 None:intergenic
CAAATTTCCATTAATCTCCA+AGG 0.503218 2_3:+8799425 None:intergenic
GAACTTGGAGGTTGTGGCTG+TGG 0.508394 2_3:-8800765 Msa0276510:CDS
GATGTTCTTAAACAAGGGAC+AGG 0.511572 2_3:-8800501 Msa0276510:CDS
AACACTCGCAAATTCTTCAA+AGG 0.513485 2_3:-8799971 Msa0276510:CDS
ATGTTGAGACATTCACCAAA+TGG 0.520138 2_3:-8800827 Msa0276510:CDS
TTTGTGATGTTCTTAAACAA+GGG 0.524179 2_3:-8800506 Msa0276510:CDS
TTTCATTAGATGCTCATCAC+TGG 0.524868 2_3:-8798506 Msa0276510:CDS
AAGTTTCTGCTCAAATGTCC+AGG 0.526250 2_3:+8798995 None:intergenic
GTATTTCTTTGCAACAACTT+AGG 0.527077 2_3:+8800970 None:intergenic
CAGATTTCAAATGAACACTT+AGG 0.531466 2_3:+8800993 None:intergenic
AGATGCTCAAGCTAAAAGAT+TGG 0.532972 2_3:-8799910 Msa0276510:CDS
TTTATAAGGTCACTTGACAA+TGG 0.534492 2_3:+8800582 None:intergenic
CATGTCATAAAGCCTGATTT+GGG 0.535555 2_3:-8799761 Msa0276510:CDS
ATCAAAGAAGAACTTGGAAG+AGG 0.537226 2_3:-8799713 Msa0276510:CDS
AATGTTTGCTTATGTTCAAG+AGG 0.537390 2_3:-8801622 Msa0276510:CDS
GTATCAAAATTTGTTTGTAG+AGG 0.537555 2_3:+8800867 None:intergenic
ATGTTCAAGAGGAATTATCA+AGG 0.540569 2_3:-8801611 Msa0276510:intron
AAATTTCCATTAATCTCCAA+GGG 0.542541 2_3:+8799426 None:intergenic
TTTGATACAAACAATTCAGA+GGG 0.542912 2_3:-8800852 Msa0276510:CDS
TATGGAATCAAAGAAGAACT+TGG 0.544627 2_3:-8799719 Msa0276510:CDS
GTTTGTGATGTTCTTAAACA+AGG 0.544837 2_3:-8800507 Msa0276510:CDS
TTGAGATTTCTGACTTGGTG+TGG 0.545685 2_3:+8798942 None:intergenic
GAAGCAGTATTTATTCCTGC+TGG 0.549657 2_3:-8798969 Msa0276510:CDS
AAATCAGGCTTTATGACATG+TGG 0.556215 2_3:+8799764 None:intergenic
CGATTGCTTGGCTAGTTGTG+AGG 0.557110 2_3:-8800385 Msa0276510:intron
AAATGGAATGCTAATAGTGA+TGG 0.557384 2_3:-8800810 Msa0276510:CDS
GAGTATAGCGAAACTCGAGC+TGG 0.557744 2_3:-8799815 Msa0276510:CDS
TCAAGATAATATAGACCCCT+TGG 0.558942 2_3:-8799442 Msa0276510:CDS
TTCTTCAAAGGTTACAAGGA+GGG 0.559654 2_3:-8799959 Msa0276510:CDS
TGAGCATAAGAAGAAGCTAA+AGG 0.568843 2_3:-8799121 Msa0276510:CDS
ACTTGGTGTGGACATCCAGC+AGG 0.572126 2_3:+8798954 None:intergenic
GAATGTGCTCCAAAAGAACT+TGG 0.573014 2_3:-8800780 Msa0276510:CDS
TGAAACGCATGCTTCCAAAT+GGG 0.579984 2_3:-8800728 Msa0276510:CDS
AGAGGTTATGATTACATGCA+TGG 0.580101 2_3:-8800897 Msa0276510:CDS
TCAATTACAGGTGTAGAACC+TGG 0.581857 2_3:-8799013 Msa0276510:intron
AATCAGGCTTTATGACATGT+GGG 0.582306 2_3:+8799765 None:intergenic
AACATTGGTCATGAATAGGA+TGG 0.583998 2_3:+8799157 None:intergenic
TGAAACTTCATTTCAGAGCG+TGG 0.589382 2_3:+8800930 None:intergenic
TATTTGAATTTCGAAAGCAT+TGG 0.595321 2_3:-8800551 Msa0276510:CDS
GGGCACATAAGGCTCAAGAT+CGG 0.601082 2_3:-8799479 Msa0276510:CDS
AGATCTTCAAACTTGTCAGA+AGG 0.605347 2_3:+8799884 None:intergenic
TAAGGCTCAAGATCGGAAAG+AGG 0.605735 2_3:-8799472 Msa0276510:CDS
AATGCTCTCCAAGTAACCAT+AGG 0.613712 2_3:+8800465 None:intergenic
AAGGCTCAAGATCGGAAAGA+GGG 0.615328 2_3:-8799471 Msa0276510:CDS
ACAACTAGCCAAGCAATCGA+TGG 0.616859 2_3:+8800389 None:intergenic
TAAGGTCACTTGACAATGGG+CGG 0.617107 2_3:+8800586 None:intergenic
GTTTAAGGTGCATCAAACAA+TGG 0.619517 2_3:-8801790 Msa0276510:intron
TGTTGCAAAGAAATACGCAA+TGG 0.621957 2_3:-8800963 Msa0276510:CDS
ACTCTTGAAATGGCAAGCAA+CGG 0.622659 2_3:+8799834 None:intergenic
TCAGGCTTTATGACATGTGG+GGG 0.630295 2_3:+8799767 None:intergenic
TCTTCAAACTTGTCAGAAGG+TGG 0.634708 2_3:+8799887 None:intergenic
ATCAGGCTTTATGACATGTG+GGG 0.635513 2_3:+8799766 None:intergenic
TGTGCTCCAAAAGAACTTGG+AGG 0.649295 2_3:-8800777 Msa0276510:CDS
ACACCAAGTCAGAAATCTCA+AGG 0.651808 2_3:-8798940 Msa0276510:intron
TCACTGTGATATGGCAGATG+CGG 0.655612 2_3:-8799672 Msa0276510:intron
ATTTGGTGAATGTCTCAACA+TGG 0.656800 2_3:+8800829 None:intergenic
ATTCTTCAAAGGTTACAAGG+AGG 0.679618 2_3:-8799960 Msa0276510:CDS
AACGGATAAACTCATCACAA+TGG 0.689117 2_3:+8799852 None:intergenic
AATTTCCATTAATCTCCAAG+GGG 0.708604 2_3:+8799427 None:intergenic
TCAAAAGAAACAGAAACTGG+TGG 0.714549 2_3:-8799378 Msa0276510:CDS
ACAACTTCCAAAGAATCACA+AGG 0.719515 2_3:-8798719 Msa0276510:CDS
ATAAACTCATCACAATGGCG+CGG 0.720209 2_3:+8799857 None:intergenic
GGCAAGAGAAGACAAACTTG+AGG 0.724823 2_3:-8798698 Msa0276510:intron
GGTTATGATTACATGCATGG+TGG 0.788197 2_3:-8800894 Msa0276510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAAAATAGAATAATTA+AGG + chr2_3:8799141-8799160 None:intergenic 10.0%
!! TGTTATTAGAAAATTAAAAA+GGG - chr2_3:8800809-8800828 Msa0276510:CDS 10.0%
!!! AATTGATTGATATTTTTTAA+TGG - chr2_3:8801721-8801740 Msa0276510:intron 10.0%
!! ATGAAATAGAAGATTTAATT+AGG - chr2_3:8798758-8798777 Msa0276510:CDS 15.0%
!! GTAATAACTTGATTATATAT+TGG + chr2_3:8798885-8798904 None:intergenic 15.0%
!!! CTATTTTTTCAAATCATTAT+TGG - chr2_3:8799149-8799168 Msa0276510:CDS 15.0%
!!! AGTAAACTTCTTTTTATATA+TGG - chr2_3:8799982-8800001 Msa0276510:CDS 15.0%
!! TTACTTTATATGCATATATT+TGG - chr2_3:8800275-8800294 Msa0276510:intron 15.0%
!! TACTTTATATGCATATATTT+GGG - chr2_3:8800276-8800295 Msa0276510:intron 15.0%
!! CTGTTATTAGAAAATTAAAA+AGG - chr2_3:8800808-8800827 Msa0276510:CDS 15.0%
!! TCATGATTTACAAACATTTA+AGG - chr2_3:8798557-8798576 Msa0276510:CDS 20.0%
!! CATGATTTACAAACATTTAA+GGG - chr2_3:8798558-8798577 Msa0276510:CDS 20.0%
!! ATAACTTGATTATATATTGG+TGG + chr2_3:8798882-8798901 None:intergenic 20.0%
!!! TCAAAAATTTGTTGAACAAA+AGG + chr2_3:8798910-8798929 None:intergenic 20.0%
!! AAGTTTCAATACAAAAATAG+AGG - chr2_3:8799393-8799412 Msa0276510:CDS 20.0%
!!! CAAATAGCATTTCTTTTATA+AGG + chr2_3:8799743-8799762 None:intergenic 20.0%
!!! AAAAACACTTTTAAAGCATA+GGG + chr2_3:8800192-8800211 None:intergenic 20.0%
!!! AATTAGATTTTGAAGCTAAA+TGG + chr2_3:8800233-8800252 None:intergenic 20.0%
!! GAAGAACATATAAAAATCTT+TGG - chr2_3:8800371-8800390 Msa0276510:intron 20.0%
!! TAGAAACAATAAAGTAAATG+TGG + chr2_3:8800710-8800729 None:intergenic 20.0%
!!! TTTTGTTCAATAAATTTGAC+AGG - chr2_3:8800734-8800753 Msa0276510:CDS 20.0%
!! AAAAGTTAGATGCATATTTA+AGG - chr2_3:8800988-8801007 Msa0276510:CDS 20.0%
!! CAATAGTCAAATAAAAACAT+TGG + chr2_3:8801169-8801188 None:intergenic 20.0%
!! GTAGAAAAAATACATGTATT+TGG - chr2_3:8801433-8801452 Msa0276510:intron 20.0%
! TTGCAATTCTTACAACAAAA+GGG + chr2_3:8798662-8798681 None:intergenic 25.0%
! ATTGCAATTCTTACAACAAA+AGG + chr2_3:8798663-8798682 None:intergenic 25.0%
! CATAAGAGAAACTAATCTAT+GGG + chr2_3:8798741-8798760 None:intergenic 25.0%
! TCATAAGAGAAACTAATCTA+TGG + chr2_3:8798742-8798761 None:intergenic 25.0%
! ATAAAATTAGATGGCTAAGT+TGG + chr2_3:8798801-8798820 None:intergenic 25.0%
! ATTATGAATCACTCATAACA+CGG + chr2_3:8799210-8799229 None:intergenic 25.0%
!! GTATCAAAATTTGTTTGTAG+AGG + chr2_3:8799444-8799463 None:intergenic 25.0%
!! TTTTGATACAAACAATTCAG+AGG - chr2_3:8799455-8799474 Msa0276510:CDS 25.0%
! TTTGATACAAACAATTCAGA+GGG - chr2_3:8799456-8799475 Msa0276510:CDS 25.0%
!! TATTTGAATTTCGAAAGCAT+TGG - chr2_3:8799757-8799776 Msa0276510:CDS 25.0%
! AGAACATCACAAACTATAAT+TGG + chr2_3:8799795-8799814 None:intergenic 25.0%
! TTTGTGATGTTCTTAAACAA+GGG - chr2_3:8799802-8799821 Msa0276510:CDS 25.0%
!! TTTTGAATTGTGTAAGTCTA+TGG - chr2_3:8800009-8800028 Msa0276510:intron 25.0%
!!! TTTTTTTTTAGCAAGTGAGT+CGG + chr2_3:8800074-8800093 None:intergenic 25.0%
!!! TATTTACGTTTTATTCCTTC+AGG - chr2_3:8800128-8800147 Msa0276510:intron 25.0%
!! GTACATTTAAAGTCATGTTT+CGG - chr2_3:8800154-8800173 Msa0276510:intron 25.0%
!! TACATTTAAAGTCATGTTTC+GGG - chr2_3:8800155-8800174 Msa0276510:intron 25.0%
!!! GAAAAACACTTTTAAAGCAT+AGG + chr2_3:8800193-8800212 None:intergenic 25.0%
! AACATATAAAAATCTTTGGC+CGG - chr2_3:8800375-8800394 Msa0276510:intron 25.0%
!! CCATAAGCAATATAAGTTTT+TGG + chr2_3:8800574-8800593 None:intergenic 25.0%
! CCAAAAACTTATATTGCTTA+TGG - chr2_3:8800571-8800590 Msa0276510:CDS 25.0%
!! AAAATTAAAAAGGGCACATA+AGG - chr2_3:8800818-8800837 Msa0276510:CDS 25.0%
! AAATTTCCATTAATCTCCAA+GGG + chr2_3:8800885-8800904 None:intergenic 25.0%
!! AAAAGTATGCCTAAATTCTT+TGG + chr2_3:8801021-8801040 None:intergenic 25.0%
!! AACTTCTTTGTTGGTTAATT+AGG - chr2_3:8801124-8801143 Msa0276510:intron 25.0%
! TAAAAACATTGGTCATGAAT+AGG + chr2_3:8801158-8801177 None:intergenic 25.0%
! AATGACTCTTAATCAATTAC+AGG - chr2_3:8801283-8801302 Msa0276510:intron 25.0%
! CAAAAGAAAGAAAGACAAAA+AGG + chr2_3:8801663-8801682 None:intergenic 25.0%
GTCAGAAATTGTACTGTTTA+AGG - chr2_3:8798503-8798522 Msa0276510:CDS 30.0%
AATGTTTGCTTATGTTCAAG+AGG - chr2_3:8798686-8798705 Msa0276510:intron 30.0%
ATGTTCAAGAGGAATTATCA+AGG - chr2_3:8798697-8798716 Msa0276510:intron 30.0%
GAGATTGAAGCTATAATACA+AGG - chr2_3:8798949-8798968 Msa0276510:CDS 30.0%
! CTAACAATAAACTTGATAGC+AGG - chr2_3:8799033-8799052 Msa0276510:intron 30.0%
! AAACTCTATGCTTTGATGAT+GGG - chr2_3:8799085-8799104 Msa0276510:intron 30.0%
CAGATTTCAAATGAACACTT+AGG + chr2_3:8799318-8799337 None:intergenic 30.0%
GTATTTCTTTGCAACAACTT+AGG + chr2_3:8799341-8799360 None:intergenic 30.0%
ATCACTATTAGCATTCCATT+TGG + chr2_3:8799499-8799518 None:intergenic 30.0%
AAATGGAATGCTAATAGTGA+TGG - chr2_3:8799498-8799517 Msa0276510:CDS 30.0%
AAATCAGATATTCTCCCATT+TGG + chr2_3:8799597-8799616 None:intergenic 30.0%
TTATAAGGTCACTTGACAAT+GGG + chr2_3:8799728-8799747 None:intergenic 30.0%
TTTATAAGGTCACTTGACAA+TGG + chr2_3:8799729-8799748 None:intergenic 30.0%
GTTTGTGATGTTCTTAAACA+AGG - chr2_3:8799801-8799820 Msa0276510:CDS 30.0%
!! TTGAATTCTTTGGCTCATTT+TGG - chr2_3:8799947-8799966 Msa0276510:CDS 30.0%
AAGTCTATGGCATATTAATG+AGG - chr2_3:8800022-8800041 Msa0276510:intron 30.0%
TGGTTGAAAAGGATGAATAT+TGG + chr2_3:8800302-8800321 None:intergenic 30.0%
CAAATTCTTCAAAGGTTACA+AGG - chr2_3:8800345-8800364 Msa0276510:intron 30.0%
TATGGAATCAAAGAAGAACT+TGG - chr2_3:8800589-8800608 Msa0276510:CDS 30.0%
!!! TATTTTGACTCATACAACTG+AGG - chr2_3:8800761-8800780 Msa0276510:CDS 30.0%
!!! ATTTTGACTCATACAACTGA+GGG - chr2_3:8800762-8800781 Msa0276510:CDS 30.0%
AATTTCCATTAATCTCCAAG+GGG + chr2_3:8800884-8800903 None:intergenic 30.0%
CAAATTTCCATTAATCTCCA+AGG + chr2_3:8800886-8800905 None:intergenic 30.0%
TAATATAGTACCTGTTCAAC+TGG + chr2_3:8801050-8801069 None:intergenic 30.0%
TAACCAACAAAGAAGTTAGT+GGG + chr2_3:8801121-8801140 None:intergenic 30.0%
TTAACCAACAAAGAAGTTAG+TGG + chr2_3:8801122-8801141 None:intergenic 30.0%
!! ATTTTCTGGTGAAACAAAGT+CGG + chr2_3:8801534-8801553 None:intergenic 30.0%
! GTTTAAGGTGCATCAAACAA+TGG - chr2_3:8798518-8798537 Msa0276510:CDS 35.0%
TCATCAAAGCATAGAGTTTG+AGG + chr2_3:8799084-8799103 None:intergenic 35.0%
CAAACTCTATGCTTTGATGA+TGG - chr2_3:8799084-8799103 Msa0276510:intron 35.0%
TGTTGCAAAGAAATACGCAA+TGG - chr2_3:8799345-8799364 Msa0276510:CDS 35.0%
AGAGGTTATGATTACATGCA+TGG - chr2_3:8799411-8799430 Msa0276510:CDS 35.0%
! ATTTGGTGAATGTCTCAACA+TGG + chr2_3:8799482-8799501 None:intergenic 35.0%
ATGTTGAGACATTCACCAAA+TGG - chr2_3:8799481-8799500 Msa0276510:CDS 35.0%
CTTCATGATATACTGAGCTT+TGG + chr2_3:8799625-8799644 None:intergenic 35.0%
!! TTGAATTTCGAAAGCATTGG+AGG - chr2_3:8799760-8799779 Msa0276510:CDS 35.0%
GTTGTGAGGTTTGAATTCTT+TGG - chr2_3:8799937-8799956 Msa0276510:CDS 35.0%
TAATGAGGCCTACAACAAAT+TGG - chr2_3:8800037-8800056 Msa0276510:intron 35.0%
!! AAGTTCCTCCAATTTGTTGT+AGG + chr2_3:8800048-8800067 None:intergenic 35.0%
! ATTTAAAGTCATGTTTCGGG+TGG - chr2_3:8800158-8800177 Msa0276510:intron 35.0%
GTGTTAATTTCTACCTGCAA+TGG + chr2_3:8800322-8800341 None:intergenic 35.0%
AACACTCGCAAATTCTTCAA+AGG - chr2_3:8800337-8800356 Msa0276510:intron 35.0%
ATTCTTCAAAGGTTACAAGG+AGG - chr2_3:8800348-8800367 Msa0276510:intron 35.0%
TTCTTCAAAGGTTACAAGGA+GGG - chr2_3:8800349-8800368 Msa0276510:intron 35.0%
AGATGCTCAAGCTAAAAGAT+TGG - chr2_3:8800398-8800417 Msa0276510:CDS 35.0%
AGATCTTCAAACTTGTCAGA+AGG + chr2_3:8800427-8800446 None:intergenic 35.0%
AACGGATAAACTCATCACAA+TGG + chr2_3:8800459-8800478 None:intergenic 35.0%
GTTTCGCTATACTCTTGAAA+TGG + chr2_3:8800487-8800506 None:intergenic 35.0%
! AATCAGGCTTTATGACATGT+GGG + chr2_3:8800546-8800565 None:intergenic 35.0%
! AAATCAGGCTTTATGACATG+TGG + chr2_3:8800547-8800566 None:intergenic 35.0%
ACATGTCATAAAGCCTGATT+TGG - chr2_3:8800546-8800565 Msa0276510:CDS 35.0%
CATGTCATAAAGCCTGATTT+GGG - chr2_3:8800547-8800566 Msa0276510:CDS 35.0%
!! TAAGTTTTTGGACCCAAATC+AGG + chr2_3:8800562-8800581 None:intergenic 35.0%
ATCAAAGAAGAACTTGGAAG+AGG - chr2_3:8800595-8800614 Msa0276510:CDS 35.0%
CACAAAACTTCACTGTGATA+TGG - chr2_3:8800627-8800646 Msa0276510:CDS 35.0%
!! TTTTGACTCATACAACTGAG+GGG - chr2_3:8800763-8800782 Msa0276510:CDS 35.0%
TCAAGATAATATAGACCCCT+TGG - chr2_3:8800866-8800885 Msa0276510:CDS 35.0%
TGCTCAAAAGAAACAGAAAC+TGG - chr2_3:8800927-8800946 Msa0276510:CDS 35.0%
TCAAAAGAAACAGAAACTGG+TGG - chr2_3:8800930-8800949 Msa0276510:CDS 35.0%
GGAAACACTCCAAAGAATTT+AGG - chr2_3:8801009-8801028 Msa0276510:CDS 35.0%
! TTTTTGTTCTCCAGTTGAAC+AGG - chr2_3:8801037-8801056 Msa0276510:CDS 35.0%
AACATTGGTCATGAATAGGA+TGG + chr2_3:8801154-8801173 None:intergenic 35.0%
TGAGCATAAGAAGAAGCTAA+AGG - chr2_3:8801187-8801206 Msa0276510:intron 35.0%
AAGAAGCTAAAGGAAGAGTT+TGG - chr2_3:8801197-8801216 Msa0276510:intron 35.0%
ACTAATTGCATGATGCATTG+AGG + chr2_3:8801250-8801269 None:intergenic 35.0%
! ATGCAGATATGCACATTTTC+TGG + chr2_3:8801548-8801567 None:intergenic 35.0%
ACAACTTCCAAAGAATCACA+AGG - chr2_3:8801589-8801608 Msa0276510:intron 35.0%
TTTCATTAGATGCTCATCAC+TGG - chr2_3:8801802-8801821 Msa0276510:CDS 35.0%
CTCTGCAATATCGTGCAAAA+AGG + chr2_3:8798633-8798652 None:intergenic 40.0%
! TTTTGCACGATATTGCAGAG+AGG - chr2_3:8798633-8798652 Msa0276510:intron 40.0%
TGAAACTTCATTTCAGAGCG+TGG + chr2_3:8799381-8799400 None:intergenic 40.0%
GGTTATGATTACATGCATGG+TGG - chr2_3:8799414-8799433 Msa0276510:CDS 40.0%
GAATGTGCTCCAAAAGAACT+TGG - chr2_3:8799528-8799547 Msa0276510:CDS 40.0%
TGAAACGCATGCTTCCAAAT+GGG - chr2_3:8799580-8799599 Msa0276510:intron 40.0%
!! TTTCGAAAGCATTGGAGGAA+TGG - chr2_3:8799765-8799784 Msa0276510:CDS 40.0%
GATGTTCTTAAACAAGGGAC+AGG - chr2_3:8799807-8799826 Msa0276510:CDS 40.0%
AATGCTCTCCAAGTAACCAT+AGG + chr2_3:8799846-8799865 None:intergenic 40.0%
! AGTAAAAGCCATCGATTGCT+TGG - chr2_3:8799911-8799930 Msa0276510:CDS 40.0%
CTTTAAATGTACACGCCTGA+AGG + chr2_3:8800146-8800165 None:intergenic 40.0%
! TCATCCTTTTCAACCATTGC+AGG - chr2_3:8800306-8800325 Msa0276510:intron 40.0%
TCTACCTGCAATGGTTGAAA+AGG + chr2_3:8800313-8800332 None:intergenic 40.0%
!!! TCTTTTAGCTTGAGCATCTC+CGG + chr2_3:8800397-8800416 None:intergenic 40.0%
TCTTCAAACTTGTCAGAAGG+TGG + chr2_3:8800424-8800443 None:intergenic 40.0%
ATAAACTCATCACAATGGCG+CGG + chr2_3:8800454-8800473 None:intergenic 40.0%
ACTCTTGAAATGGCAAGCAA+CGG + chr2_3:8800477-8800496 None:intergenic 40.0%
! ATCAGGCTTTATGACATGTG+GGG + chr2_3:8800545-8800564 None:intergenic 40.0%
ATAGACCCCTTGGAGATTAA+TGG - chr2_3:8800876-8800895 Msa0276510:CDS 40.0%
!! CTGTTTCTTTTGAGCACACT+TGG + chr2_3:8800923-8800942 None:intergenic 40.0%
AGTCCCACTAACTTCTTTGT+TGG - chr2_3:8801115-8801134 Msa0276510:intron 40.0%
TCAATTACAGGTGTAGAACC+TGG - chr2_3:8801295-8801314 Msa0276510:intron 40.0%
AAGTTTCTGCTCAAATGTCC+AGG + chr2_3:8801316-8801335 None:intergenic 40.0%
TGGACATTTGAGCAGAAACT+TGG - chr2_3:8801315-8801334 Msa0276510:intron 40.0%
GAAGCAGTATTTATTCCTGC+TGG - chr2_3:8801339-8801358 Msa0276510:intron 40.0%
!! TTGAGATTTCTGACTTGGTG+TGG + chr2_3:8801369-8801388 None:intergenic 40.0%
ACACCAAGTCAGAAATCTCA+AGG - chr2_3:8801368-8801387 Msa0276510:intron 40.0%
TGACCTTGAGATTTCTGACT+TGG + chr2_3:8801374-8801393 None:intergenic 40.0%
TGGAAGTTGTCGAAACTCTT+CGG + chr2_3:8801579-8801598 None:intergenic 40.0%
TCTCTTGCCTTGTGATTCTT+TGG + chr2_3:8801599-8801618 None:intergenic 40.0%
CTTCTAATGCTTGTACAGCT+TGG + chr2_3:8801781-8801800 None:intergenic 40.0%
!! TTGATGATGGGCGCATCTAT+TGG - chr2_3:8799097-8799116 Msa0276510:intron 45.0%
TGTGCTCCAAAAGAACTTGG+AGG - chr2_3:8799531-8799550 Msa0276510:CDS 45.0%
! CCACAACCTCCAAGTTCTTT+TGG + chr2_3:8799540-8799559 None:intergenic 45.0%
CCAAAAGAACTTGGAGGTTG+TGG - chr2_3:8799537-8799556 Msa0276510:CDS 45.0%
TTGTGGCTGTGGTTGTGTTA+TGG - chr2_3:8799554-8799573 Msa0276510:CDS 45.0%
CTGAAACGCATGCTTCCAAA+TGG - chr2_3:8799579-8799598 Msa0276510:intron 45.0%
TAAGGTCACTTGACAATGGG+CGG + chr2_3:8799725-8799744 None:intergenic 45.0%
AACAAGGGACAGGTTTGAGT+TGG - chr2_3:8799817-8799836 Msa0276510:CDS 45.0%
! ACAAGGGACAGGTTTGAGTT+GGG - chr2_3:8799818-8799837 Msa0276510:CDS 45.0%
!! GAGAGCATTGTGCGCAAATT+TGG - chr2_3:8799857-8799876 Msa0276510:CDS 45.0%
! TTGTGCGCAAATTTGGCTTC+AGG - chr2_3:8799864-8799883 Msa0276510:CDS 45.0%
ACAACTAGCCAAGCAATCGA+TGG + chr2_3:8799922-8799941 None:intergenic 45.0%
TGAGGCCTACAACAAATTGG+AGG - chr2_3:8800040-8800059 Msa0276510:intron 45.0%
! TCAGGCTTTATGACATGTGG+GGG + chr2_3:8800544-8800563 None:intergenic 45.0%
TCACTGTGATATGGCAGATG+CGG - chr2_3:8800636-8800655 Msa0276510:CDS 45.0%
TAAGGCTCAAGATCGGAAAG+AGG - chr2_3:8800836-8800855 Msa0276510:CDS 45.0%
AAGGCTCAAGATCGGAAAGA+GGG - chr2_3:8800837-8800856 Msa0276510:CDS 45.0%
! AGAAACTGGTGGTGCTCTTT+GGG - chr2_3:8800941-8800960 Msa0276510:CDS 45.0%
GGCAAGAGAAGACAAACTTG+AGG - chr2_3:8801610-8801629 Msa0276510:intron 45.0%
!! AAAAATATAATAAAATTAGA+TGG + chr2_3:8798810-8798829 None:intergenic 5.0%
!! AGGTTTGAGTTGGGAGCCTA+TGG - chr2_3:8799827-8799846 Msa0276510:CDS 50.0%
GTTGGGAGCCTATGGTTACT+TGG - chr2_3:8799835-8799854 Msa0276510:CDS 50.0%
! CGATTGCTTGGCTAGTTGTG+AGG - chr2_3:8799923-8799942 Msa0276510:CDS 50.0%
GAGTATAGCGAAACTCGAGC+TGG - chr2_3:8800493-8800512 Msa0276510:CDS 50.0%
GCAACTTTGCAGCAAGGTTG+AGG + chr2_3:8800522-8800541 None:intergenic 50.0%
GGGCACATAAGGCTCAAGAT+CGG - chr2_3:8800829-8800848 Msa0276510:CDS 50.0%
! CAGAAACTGGTGGTGCTCTT+TGG - chr2_3:8800940-8800959 Msa0276510:CDS 50.0%
GAACTTGGAGGTTGTGGCTG+TGG - chr2_3:8799543-8799562 Msa0276510:CDS 55.0%
!! ACTTGGTGTGGACATCCAGC+AGG + chr2_3:8801357-8801376 None:intergenic 55.0%
GTGGGGGCAACTTTGCAGCA+AGG + chr2_3:8800528-8800547 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8798501 8801829 8798501 ID=Msa0276510;Name=Msa0276510
chr2_3 mRNA 8798501 8801829 8798501 ID=Msa0276510-mRNA-1;Parent=Msa0276510;Name=Msa0276510-mRNA-1;_AED=0.17;_eAED=0.22;_QI=0|0|0|1|1|1|9|0|588
chr2_3 exon 8801791 8801829 8801791 ID=Msa0276510-mRNA-1:exon:4045;Parent=Msa0276510-mRNA-1
chr2_3 exon 8801612 8801679 8801612 ID=Msa0276510-mRNA-1:exon:4044;Parent=Msa0276510-mRNA-1
chr2_3 exon 8800386 8801058 8800386 ID=Msa0276510-mRNA-1:exon:4043;Parent=Msa0276510-mRNA-1
chr2_3 exon 8799673 8800002 8799673 ID=Msa0276510-mRNA-1:exon:4042;Parent=Msa0276510-mRNA-1
chr2_3 exon 8799272 8799574 8799272 ID=Msa0276510-mRNA-1:exon:4041;Parent=Msa0276510-mRNA-1
chr2_3 exon 8799117 8799184 8799117 ID=Msa0276510-mRNA-1:exon:4040;Parent=Msa0276510-mRNA-1
chr2_3 exon 8798941 8799025 8798941 ID=Msa0276510-mRNA-1:exon:4039;Parent=Msa0276510-mRNA-1
chr2_3 exon 8798699 8798818 8798699 ID=Msa0276510-mRNA-1:exon:4038;Parent=Msa0276510-mRNA-1
chr2_3 exon 8798501 8798581 8798501 ID=Msa0276510-mRNA-1:exon:4037;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8801791 8801829 8801791 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8801612 8801679 8801612 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8800386 8801058 8800386 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8799673 8800002 8799673 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8799272 8799574 8799272 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8799117 8799184 8799117 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8798941 8799025 8798941 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8798699 8798818 8798699 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
chr2_3 CDS 8798501 8798581 8798501 ID=Msa0276510-mRNA-1:cds;Parent=Msa0276510-mRNA-1
Gene Sequence

>Msa0276510

ATGTCAGAAATTGTACTGTTTAAGGTGCATCAAACAATGAGAGGTGTCCCTTTTGTTGTAAGAATTGCAATTGCAATGTTTGCTTATGTTCAAGAGGAATTATCAAGTAATCTTTGCGCTACTTCGATTATTGACTTTCATAGAAGCTGTCCTAAGTGTTCATTTGAAATCTGCCTAAGTTGTTGCAAAGAAATACGCAATGGAAGCATTAAACCACGCTCTGAAATGAAGTTTCAATACAAAAATAGAGGTTATGATTACATGCATGGTGGTGATCCTCTACAAACAAATTTTGATACAAACAATTCAGAGGGCCATGTTGAGACATTCACCAAATGGAATGCTAATAGTGATGGAAGTGTTGAATGTGCTCCAAAAGAACTTGGAGGTTGTGGCTGTGGTTGTGTTATGGAGCTGAAACGCATGCTTCCAAATGGGAGAATATCTGATTTGATAACCAAAGCTCAGTATATCATGAAGTATTTTTGCAATATTGAAGAGAAAATGAATGTTCAGAAAGAAGTAGTGTCAAGTTGCAAGAATGAGAATAATGTCTACCGCCCATTGTCAAGTGACCTTATAAAAGAAATGCTATTTGAATTTCGAAAGCATTGGAGGAATGGTGAACCAATTATAGTTTGTGATGTTCTTAAACAAGGGACAGGTTTGAGTTGGGAGCCTATGGTTACTTGGAGAGCATTGTGCGCAAATTTGGCTTCAGGTGTCAGCGCAAATTCTAAGTCAGAAGTAAAAGCCATCGATTGCTTGGCTAGTTGTGAGGTAGAAATTAACACTCGCAAATTCTTCAAAGGTTACAAGGAGGGAAGAACATATAAAAATCTTTGGCCGGAGATGCTCAAGCTAAAAGATTGGCCACCTTCTGACAAGTTTGAAGATCTTTTGCCGCGCCATTGTGATGAGTTTATCCGTTGCTTGCCATTTCAAGAGTATAGCGAAACTCGAGCTGGAATCCTCAACCTTGCTGCAAAGTTGCCCCCACATGTCATAAAGCCTGATTTGGGTCCAAAAACTTATATTGCTTATGGAATCAAAGAAGAACTTGGAAGAGGAGATTCTGTCACAAAACTTCACTGTGATATGGCAGATGCGGTGAATATTTTGACTCATACAACTGAGGGGAAATTAACTGATGAACAACATTCTGTTATTAGAAAATTAAAAAGGGCACATAAGGCTCAAGATCGGAAAGAGGGTCGTGCTCAAGATAATATAGACCCCTTGGAGATTAATGGAAATTTGTTTGAAAATGAAGTCCAAGTGTGCTCAAAAGAAACAGAAACTGGTGGTGCTCTTTGGGACATATTCAGAAGAGAAGATACTGAAAAGTTAGATGCATATTTAAGGAAACACTCCAAAGAATTTAGGCATACTTTTTGTTCTCCAGTTGAACAGGTTGTCCATCCTATTCATGACCAATGTTTTTATTTGACTATTGAGCATAAGAAGAAGCTAAAGGAAGAGTGTAGAACCTGGACATTTGAGCAGAAACTTGGTGAAGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGCCGACTTTGTTTCACCAGAAAATGTGCATATCTGCATGCTTTTAACCGAAGAGTTTCGACAACTTCCAAAGAATCACAAGGCAAGAGAAGACAAACTTGAGATAAAGAAGATAATAGTCTATGCTGTTGACCAAGCTGTACAAGCATTAGAAGATTTCATTAGATGCTCATCACTGGCTTGA

Protein sequence

>Msa0276510

MSEIVLFKVHQTMRGVPFVVRIAIAMFAYVQEELSSNLCATSIIDFHRSCPKCSFEICLSCCKEIRNGSIKPRSEMKFQYKNRGYDYMHGGDPLQTNFDTNNSEGHVETFTKWNANSDGSVECAPKELGGCGCGCVMELKRMLPNGRISDLITKAQYIMKYFCNIEEKMNVQKEVVSSCKNENNVYRPLSSDLIKEMLFEFRKHWRNGEPIIVCDVLKQGTGLSWEPMVTWRALCANLASGVSANSKSEVKAIDCLASCEVEINTRKFFKGYKEGRTYKNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSETRAGILNLAAKLPPHVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMADAVNILTHTTEGKLTDEQHSVIRKLKRAHKAQDRKEGRAQDNIDPLEINGNLFENEVQVCSKETETGGALWDIFRREDTEKLDAYLRKHSKEFRHTFCSPVEQVVHPIHDQCFYLTIEHKKKLKEECRTWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHICMLLTEEFRQLPKNHKAREDKLEIKKIIVYAVDQAVQALEDFIRCSSLA*