Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276650 | XP_024632663.2 | 53.115 | 305 | 48 | 3 | 1 | 210 | 165 | 469 | 9.59e-95 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276650 | sp|Q9FLX8|WRK27_ARATH | 58.333 | 60 | 24 | 1 | 64 | 123 | 143 | 201 | 4.69e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276650 | A0A072V4M0 | 53.115 | 305 | 48 | 3 | 1 | 210 | 165 | 469 | 4.58e-95 | 294 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0276650 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276650 | MtrunA17_Chr2g0289181 | 44.589 | 231 | 33 | 3 | 75 | 210 | 2 | 232 | 8.36e-55 | 174 |
| Msa0276650 | MtrunA17_Chr1g0202461 | 60.000 | 60 | 23 | 1 | 64 | 123 | 239 | 297 | 2.74e-19 | 84.7 |
| Msa0276650 | MtrunA17_Chr7g0248691 | 49.275 | 69 | 35 | 0 | 55 | 123 | 122 | 190 | 8.82e-18 | 80.1 |
| Msa0276650 | MtrunA17_Chr6g0470161 | 44.318 | 88 | 49 | 0 | 123 | 210 | 32 | 119 | 1.12e-17 | 75.5 |
| Msa0276650 | MtrunA17_Chr8g0348311 | 55.738 | 61 | 23 | 1 | 63 | 123 | 135 | 191 | 1.06e-16 | 77.0 |
| Msa0276650 | MtrunA17_Chr2g0284321 | 50.746 | 67 | 29 | 1 | 61 | 123 | 5 | 71 | 3.25e-16 | 74.3 |
| Msa0276650 | MtrunA17_Chr5g0401821 | 42.308 | 78 | 38 | 1 | 80 | 150 | 192 | 269 | 2.85e-15 | 72.4 |
| Msa0276650 | MtrunA17_Chr8g0379461 | 71.053 | 38 | 11 | 0 | 88 | 125 | 77 | 114 | 4.15e-15 | 71.6 |
| Msa0276650 | MtrunA17_Chr2g0319961 | 44.000 | 75 | 33 | 1 | 60 | 125 | 44 | 118 | 7.62e-15 | 71.2 |
| Msa0276650 | MtrunA17_Chr7g0270051 | 46.970 | 66 | 28 | 1 | 65 | 123 | 24 | 89 | 1.30e-14 | 70.5 |
| Msa0276650 | MtrunA17_Chr4g0053281 | 46.053 | 76 | 33 | 2 | 80 | 152 | 259 | 329 | 1.35e-14 | 71.2 |
| Msa0276650 | MtrunA17_Chr1g0184691 | 66.667 | 39 | 13 | 0 | 84 | 122 | 290 | 328 | 1.71e-14 | 71.2 |
| Msa0276650 | MtrunA17_Chr6g0470151 | 38.843 | 121 | 59 | 4 | 5 | 110 | 233 | 353 | 2.01e-14 | 70.9 |
| Msa0276650 | MtrunA17_Chr1g0147881 | 66.667 | 39 | 13 | 0 | 84 | 122 | 259 | 297 | 3.59e-14 | 70.1 |
| Msa0276650 | MtrunA17_Chr7g0228941 | 46.552 | 58 | 26 | 1 | 81 | 138 | 46 | 98 | 4.99e-14 | 66.2 |
| Msa0276650 | MtrunA17_Chr8g0387501 | 33.871 | 124 | 77 | 2 | 2 | 125 | 49 | 167 | 6.54e-14 | 68.9 |
| Msa0276650 | MtrunA17_Chr2g0293481 | 44.156 | 77 | 30 | 2 | 60 | 123 | 227 | 303 | 8.84e-14 | 69.3 |
| Msa0276650 | MtrunA17_Chr3g0139021 | 40.541 | 74 | 38 | 2 | 66 | 138 | 292 | 360 | 1.40e-13 | 68.6 |
| Msa0276650 | MtrunA17_Chr4g0071521 | 64.103 | 39 | 14 | 0 | 84 | 122 | 242 | 280 | 2.77e-13 | 67.4 |
| Msa0276650 | MtrunA17_Chr7g0266611 | 50.000 | 88 | 43 | 1 | 123 | 210 | 78 | 164 | 3.55e-13 | 65.1 |
| Msa0276650 | MtrunA17_Chr5g0447701 | 47.059 | 68 | 32 | 2 | 83 | 150 | 88 | 151 | 2.24e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276650 | AT5G52830.1 | 58.333 | 60 | 24 | 1 | 64 | 123 | 143 | 201 | 4.77e-18 | 81.6 |
| Msa0276650 | AT4G01250.1 | 54.237 | 59 | 27 | 0 | 65 | 123 | 106 | 164 | 4.37e-17 | 78.2 |
| Msa0276650 | AT5G45050.4 | 45.882 | 85 | 40 | 2 | 54 | 138 | 1009 | 1087 | 1.89e-16 | 77.8 |
| Msa0276650 | AT5G45050.2 | 45.882 | 85 | 40 | 2 | 54 | 138 | 1120 | 1198 | 2.01e-16 | 77.8 |
| Msa0276650 | AT5G45050.1 | 45.882 | 85 | 40 | 2 | 54 | 138 | 1148 | 1226 | 2.03e-16 | 77.8 |
| Msa0276650 | AT4G23550.1 | 58.491 | 53 | 22 | 0 | 71 | 123 | 124 | 176 | 3.14e-16 | 75.9 |
| Msa0276650 | AT1G29280.1 | 48.571 | 70 | 27 | 1 | 63 | 123 | 41 | 110 | 1.62e-15 | 73.6 |
| Msa0276650 | AT4G31550.1 | 69.231 | 39 | 12 | 0 | 84 | 122 | 243 | 281 | 8.59e-15 | 72.0 |
| Msa0276650 | AT4G31550.2 | 69.231 | 39 | 12 | 0 | 84 | 122 | 242 | 280 | 8.87e-15 | 72.0 |
| Msa0276650 | AT2G24570.1 | 69.231 | 39 | 12 | 0 | 84 | 122 | 240 | 278 | 1.08e-14 | 71.6 |
| Msa0276650 | AT3G58710.2 | 75.000 | 36 | 9 | 0 | 88 | 123 | 71 | 106 | 2.02e-14 | 70.5 |
| Msa0276650 | AT3G58710.1 | 75.000 | 36 | 9 | 0 | 88 | 123 | 72 | 107 | 2.02e-14 | 70.5 |
| Msa0276650 | AT2G23320.1 | 51.562 | 64 | 23 | 2 | 88 | 148 | 241 | 299 | 2.35e-14 | 70.9 |
| Msa0276650 | AT4G24240.1 | 66.667 | 39 | 13 | 0 | 84 | 122 | 278 | 316 | 3.48e-14 | 70.5 |
| Msa0276650 | AT5G28650.1 | 53.968 | 63 | 27 | 2 | 84 | 146 | 259 | 319 | 3.64e-14 | 70.5 |
| Msa0276650 | AT3G04670.1 | 66.667 | 39 | 13 | 0 | 84 | 122 | 259 | 297 | 5.07e-14 | 70.1 |
| Msa0276650 | AT2G30590.1 | 47.541 | 61 | 29 | 1 | 65 | 122 | 288 | 348 | 1.72e-13 | 68.6 |
| Msa0276650 | AT2G34830.2 | 69.444 | 36 | 11 | 0 | 88 | 123 | 225 | 260 | 1.42e-12 | 66.2 |
| Msa0276650 | AT2G34830.1 | 69.444 | 36 | 11 | 0 | 88 | 123 | 216 | 251 | 1.44e-12 | 66.2 |
| Msa0276650 | AT1G30650.1 | 64.103 | 39 | 14 | 0 | 85 | 123 | 215 | 253 | 5.16e-12 | 64.7 |
| Msa0276650 | AT2G38470.1 | 45.333 | 75 | 36 | 3 | 71 | 145 | 169 | 238 | 4.23e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGTGGAGACCCTTTAA+TGG | 0.287579 | 2_3:+8927692 | None:intergenic |
| ATAAATCCAGTTTCAGAATA+AGG | 0.301581 | 2_3:+8926809 | None:intergenic |
| TATGGACAGAAACCCATTAA+AGG | 0.302088 | 2_3:-8927705 | Msa0276650:CDS |
| TTCACATAACAACAAGATTA+TGG | 0.327717 | 2_3:-8926888 | Msa0276650:CDS |
| AACTTGCCTTATTCTGAAAC+TGG | 0.331215 | 2_3:-8926815 | Msa0276650:CDS |
| ATCAATGCATGCAACAGGTT+TGG | 0.338091 | 2_3:+8928006 | None:intergenic |
| TTGGTTAGATGATTACTTAA+TGG | 0.339688 | 2_3:-8926738 | Msa0276650:CDS |
| CACTAAGCAAATCGAGAAAA+AGG | 0.340079 | 2_3:-8927937 | Msa0276650:intron |
| TCGTGGGCATGGAGGAAATA+TGG | 0.346010 | 2_3:-8927723 | Msa0276650:CDS |
| GAGTGTTAGGAAATTAAAAT+TGG | 0.348469 | 2_3:+8928078 | None:intergenic |
| TCAATGCATGCAACAGGTTT+GGG | 0.360204 | 2_3:+8928007 | None:intergenic |
| GTTGTTGTTCCGCGAGTGTT+AGG | 0.379748 | 2_3:+8928065 | None:intergenic |
| GGATGTGGAGACCCTTTAAT+GGG | 0.385486 | 2_3:+8927693 | None:intergenic |
| ATCCACAAATGTTAGAAACT+TGG | 0.408052 | 2_3:-8926912 | Msa0276650:CDS |
| GTGATATCAATGCATGCAAC+AGG | 0.433021 | 2_3:+8928001 | None:intergenic |
| GACCCAGCTTCTTCGACAAC+GGG | 0.441727 | 2_3:+8926935 | None:intergenic |
| ACCCAAGTTTCTAACATTTG+TGG | 0.449992 | 2_3:+8926910 | None:intergenic |
| ATGGACAGAAACCCATTAAA+GGG | 0.461015 | 2_3:-8927704 | Msa0276650:CDS |
| TATAGCACACCAATGCCGTT+TGG | 0.476487 | 2_3:+8927772 | None:intergenic |
| TCCACAAATGTTAGAAACTT+GGG | 0.479230 | 2_3:-8926911 | Msa0276650:CDS |
| TTACCCGTTGTCGAAGAAGC+TGG | 0.488577 | 2_3:-8926938 | Msa0276650:CDS |
| GTTAGGAAATTAAAATTGGT+GGG | 0.494516 | 2_3:+8928082 | None:intergenic |
| AGCAATGCTCAAGTTGTTGT+CGG | 0.499521 | 2_3:-8926845 | Msa0276650:CDS |
| ATGGACTTCAACCGCCTCAA+TGG | 0.514519 | 2_3:-8926719 | Msa0276650:CDS |
| ACATAATAACCAAACGGCAT+TGG | 0.525701 | 2_3:-8927781 | Msa0276650:CDS |
| TGTTAGGAAATTAAAATTGG+TGG | 0.530065 | 2_3:+8928081 | None:intergenic |
| TGATAACAAACATAACAGCT+TGG | 0.533538 | 2_3:-8926757 | Msa0276650:CDS |
| CAGAAAACATAATAACCAAA+CGG | 0.550138 | 2_3:-8927787 | Msa0276650:CDS |
| AGATTGTCCAGCAAGAAGAA+AGG | 0.551728 | 2_3:-8927192 | Msa0276650:intron |
| TACCCGTTGTCGAAGAAGCT+GGG | 0.554513 | 2_3:-8926937 | Msa0276650:CDS |
| TGACCCAGCTTCTTCGACAA+CGG | 0.566165 | 2_3:+8926934 | None:intergenic |
| TTTCAAAAGACTCGTGGGCA+TGG | 0.568404 | 2_3:-8927734 | Msa0276650:CDS |
| TTAGGAAATTAAAATTGGTG+GGG | 0.575907 | 2_3:+8928083 | None:intergenic |
| TTATTACAAATGTAGCACTT+TGG | 0.580718 | 2_3:-8927216 | Msa0276650:CDS |
| GACTTCAACCGCCTCAATGG+TGG | 0.595091 | 2_3:-8926716 | Msa0276650:CDS |
| AGAATAGAGCACCACCATTG+AGG | 0.605565 | 2_3:+8926705 | None:intergenic |
| GATTTGCTTAGTGCAACTGA+TGG | 0.610064 | 2_3:+8927947 | None:intergenic |
| ATGAACACTAGTGTTTGTCA+TGG | 0.612356 | 2_3:+8928120 | Msa0276660:CDS |
| ATGTGTGTGAACCTTGGATG+TGG | 0.613865 | 2_3:+8927678 | None:intergenic |
| TTAAAGGGTCTCCACATCCA+AGG | 0.615060 | 2_3:-8927689 | Msa0276650:intron |
| TGAGCTTTCAAAAGACTCGT+GGG | 0.628685 | 2_3:-8927739 | Msa0276650:CDS |
| ATGAGCTTTCAAAAGACTCG+TGG | 0.638619 | 2_3:-8927740 | Msa0276650:CDS |
| CAAAAGACTCGTGGGCATGG+AGG | 0.669284 | 2_3:-8927731 | Msa0276650:CDS |
| ATAGAGCACCACCATTGAGG+CGG | 0.679111 | 2_3:+8926708 | None:intergenic |
| ACTTGAGCATTGCTACTCTG+TGG | 0.710623 | 2_3:+8926854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATATATAAAATAAT+AGG | + | chr2_3:8926920-8926939 | None:intergenic | 0.0% |
| !! | ATTAAAATATATAAAATAAT+AGG | + | chr2_3:8926920-8926939 | None:intergenic | 0.0% |
| !! | TTAAAAAAGTTATTTATTAG+GGG | + | chr2_3:8927484-8927503 | None:intergenic | 10.0% |
| !! | GATTAAAAAAGTTATTTATT+AGG | + | chr2_3:8927486-8927505 | None:intergenic | 10.0% |
| !! | TTAAAAAAGTTATTTATTAG+GGG | + | chr2_3:8927484-8927503 | None:intergenic | 10.0% |
| !! | GATTAAAAAAGTTATTTATT+AGG | + | chr2_3:8927486-8927505 | None:intergenic | 10.0% |
| !! | TTCTAATTAAATTCAACATA+TGG | - | chr2_3:8927300-8927319 | Msa0276650:intron | 15.0% |
| !! | TTTAATAAGAATGTTGTTAT+TGG | - | chr2_3:8927723-8927742 | Msa0276650:CDS | 15.0% |
| !! | TTCTAATTAAATTCAACATA+TGG | - | chr2_3:8927300-8927319 | Msa0276650:intron | 15.0% |
| !! | TTTAATAAGAATGTTGTTAT+TGG | - | chr2_3:8927723-8927742 | Msa0276650:CDS | 15.0% |
| !! | TAGAATTATATGCAATGAAT+AGG | + | chr2_3:8927285-8927304 | None:intergenic | 20.0% |
| !! | ACTTATATTGTGATATATGA+AGG | - | chr2_3:8927675-8927694 | Msa0276650:intron | 20.0% |
| !! | ACAACATTCTTATTAAATGT+TGG | + | chr2_3:8927720-8927739 | None:intergenic | 20.0% |
| !! | TAGAATTATATGCAATGAAT+AGG | + | chr2_3:8927285-8927304 | None:intergenic | 20.0% |
| !! | ACTTATATTGTGATATATGA+AGG | - | chr2_3:8927675-8927694 | Msa0276650:intron | 20.0% |
| !! | ACAACATTCTTATTAAATGT+TGG | + | chr2_3:8927720-8927739 | None:intergenic | 20.0% |
| ! | TTAGGAAATTAAAATTGGTG+GGG | + | chr2_3:8926738-8926757 | None:intergenic | 25.0% |
| ! | GTTAGGAAATTAAAATTGGT+GGG | + | chr2_3:8926739-8926758 | None:intergenic | 25.0% |
| ! | TGTTAGGAAATTAAAATTGG+TGG | + | chr2_3:8926740-8926759 | None:intergenic | 25.0% |
| ! | GAGTGTTAGGAAATTAAAAT+TGG | + | chr2_3:8926743-8926762 | None:intergenic | 25.0% |
| ! | TATTCTTACGTAACTTAACT+CGG | - | chr2_3:8926975-8926994 | Msa0276650:intron | 25.0% |
| !! | TGTTTTCTGTAAGAAAAGAA+AGG | + | chr2_3:8927020-8927039 | None:intergenic | 25.0% |
| ! | CAGAAAACATAATAACCAAA+CGG | - | chr2_3:8927031-8927050 | Msa0276650:intron | 25.0% |
| !! | AATCAATGTTTAAAACTCGA+GGG | + | chr2_3:8927248-8927267 | None:intergenic | 25.0% |
| !!! | GAGTTTTAAACATTGATTGT+AGG | - | chr2_3:8927250-8927269 | Msa0276650:intron | 25.0% |
| ! | AACATATGGTATCTTAATCA+CGG | - | chr2_3:8927314-8927333 | Msa0276650:intron | 25.0% |
| ! | TAGAGGAAGTAAAAACATAT+TGG | + | chr2_3:8927438-8927457 | None:intergenic | 25.0% |
| !! | AAATTTGTTTATGCTGAAAC+TGG | - | chr2_3:8927533-8927552 | Msa0276650:intron | 25.0% |
| ! | TCTTTAATAAATGATGTTGC+AGG | - | chr2_3:8927577-8927596 | Msa0276650:intron | 25.0% |
| ! | TTATTACAAATGTAGCACTT+TGG | - | chr2_3:8927602-8927621 | Msa0276650:intron | 25.0% |
| ! | TTCACATAACAACAAGATTA+TGG | - | chr2_3:8927930-8927949 | Msa0276650:intron | 25.0% |
| ! | ATAAATCCAGTTTCAGAATA+AGG | + | chr2_3:8928012-8928031 | None:intergenic | 25.0% |
| ! | TTGGTTAGATGATTACTTAA+TGG | - | chr2_3:8928080-8928099 | Msa0276650:CDS | 25.0% |
| ! | TTAGGAAATTAAAATTGGTG+GGG | + | chr2_3:8926738-8926757 | None:intergenic | 25.0% |
| ! | GTTAGGAAATTAAAATTGGT+GGG | + | chr2_3:8926739-8926758 | None:intergenic | 25.0% |
| ! | TGTTAGGAAATTAAAATTGG+TGG | + | chr2_3:8926740-8926759 | None:intergenic | 25.0% |
| ! | GAGTGTTAGGAAATTAAAAT+TGG | + | chr2_3:8926743-8926762 | None:intergenic | 25.0% |
| ! | TATTCTTACGTAACTTAACT+CGG | - | chr2_3:8926975-8926994 | Msa0276650:intron | 25.0% |
| !! | TGTTTTCTGTAAGAAAAGAA+AGG | + | chr2_3:8927020-8927039 | None:intergenic | 25.0% |
| ! | CAGAAAACATAATAACCAAA+CGG | - | chr2_3:8927031-8927050 | Msa0276650:intron | 25.0% |
| !! | AATCAATGTTTAAAACTCGA+GGG | + | chr2_3:8927248-8927267 | None:intergenic | 25.0% |
| !!! | GAGTTTTAAACATTGATTGT+AGG | - | chr2_3:8927250-8927269 | Msa0276650:intron | 25.0% |
| ! | AACATATGGTATCTTAATCA+CGG | - | chr2_3:8927314-8927333 | Msa0276650:intron | 25.0% |
| ! | TAGAGGAAGTAAAAACATAT+TGG | + | chr2_3:8927438-8927457 | None:intergenic | 25.0% |
| !! | AAATTTGTTTATGCTGAAAC+TGG | - | chr2_3:8927533-8927552 | Msa0276650:intron | 25.0% |
| ! | TCTTTAATAAATGATGTTGC+AGG | - | chr2_3:8927577-8927596 | Msa0276650:intron | 25.0% |
| ! | TTATTACAAATGTAGCACTT+TGG | - | chr2_3:8927602-8927621 | Msa0276650:intron | 25.0% |
| ! | TTCACATAACAACAAGATTA+TGG | - | chr2_3:8927930-8927949 | Msa0276650:intron | 25.0% |
| ! | ATAAATCCAGTTTCAGAATA+AGG | + | chr2_3:8928012-8928031 | None:intergenic | 25.0% |
| ! | TTGGTTAGATGATTACTTAA+TGG | - | chr2_3:8928080-8928099 | Msa0276650:CDS | 25.0% |
| !!! | TTTTAATTTCCTAACACTCG+CGG | - | chr2_3:8926744-8926763 | Msa0276650:CDS | 30.0% |
| GTATGCATGATAAAAATGAG+CGG | + | chr2_3:8926845-8926864 | None:intergenic | 30.0% | |
| ! | CAATCAATGTTTAAAACTCG+AGG | + | chr2_3:8927249-8927268 | None:intergenic | 30.0% |
| ! | TAAACATTGATTGTAGGCAT+TGG | - | chr2_3:8927256-8927275 | Msa0276650:intron | 30.0% |
| ! | AAACATTGATTGTAGGCATT+GGG | - | chr2_3:8927257-8927276 | Msa0276650:intron | 30.0% |
| GAAAAATATGGTACACTTAG+AGG | + | chr2_3:8927455-8927474 | None:intergenic | 30.0% | |
| TAGGGGCTTAAAGAAAAATA+TGG | + | chr2_3:8927467-8927486 | None:intergenic | 30.0% | |
| ! | TCAGCATAAACAAATTTTGC+AGG | + | chr2_3:8927530-8927549 | None:intergenic | 30.0% |
| ! | ATAGTTCCATTTCTGGATAA+GGG | + | chr2_3:8927849-8927868 | None:intergenic | 30.0% |
| ! | AATAGTTCCATTTCTGGATA+AGG | + | chr2_3:8927850-8927869 | None:intergenic | 30.0% |
| CTCTATAATAGTTCCATTTC+TGG | + | chr2_3:8927856-8927875 | None:intergenic | 30.0% | |
| ATCCACAAATGTTAGAAACT+TGG | - | chr2_3:8927906-8927925 | Msa0276650:intron | 30.0% | |
| TCCACAAATGTTAGAAACTT+GGG | - | chr2_3:8927907-8927926 | Msa0276650:intron | 30.0% | |
| TGATAACAAACATAACAGCT+TGG | - | chr2_3:8928061-8928080 | Msa0276650:CDS | 30.0% | |
| !!! | TTTTAATTTCCTAACACTCG+CGG | - | chr2_3:8926744-8926763 | Msa0276650:CDS | 30.0% |
| GTATGCATGATAAAAATGAG+CGG | + | chr2_3:8926845-8926864 | None:intergenic | 30.0% | |
| ! | CAATCAATGTTTAAAACTCG+AGG | + | chr2_3:8927249-8927268 | None:intergenic | 30.0% |
| ! | TAAACATTGATTGTAGGCAT+TGG | - | chr2_3:8927256-8927275 | Msa0276650:intron | 30.0% |
| ! | AAACATTGATTGTAGGCATT+GGG | - | chr2_3:8927257-8927276 | Msa0276650:intron | 30.0% |
| GAAAAATATGGTACACTTAG+AGG | + | chr2_3:8927455-8927474 | None:intergenic | 30.0% | |
| TAGGGGCTTAAAGAAAAATA+TGG | + | chr2_3:8927467-8927486 | None:intergenic | 30.0% | |
| ! | TCAGCATAAACAAATTTTGC+AGG | + | chr2_3:8927530-8927549 | None:intergenic | 30.0% |
| ! | ATAGTTCCATTTCTGGATAA+GGG | + | chr2_3:8927849-8927868 | None:intergenic | 30.0% |
| ! | AATAGTTCCATTTCTGGATA+AGG | + | chr2_3:8927850-8927869 | None:intergenic | 30.0% |
| CTCTATAATAGTTCCATTTC+TGG | + | chr2_3:8927856-8927875 | None:intergenic | 30.0% | |
| ATCCACAAATGTTAGAAACT+TGG | - | chr2_3:8927906-8927925 | Msa0276650:intron | 30.0% | |
| TCCACAAATGTTAGAAACTT+GGG | - | chr2_3:8927907-8927926 | Msa0276650:intron | 30.0% | |
| TGATAACAAACATAACAGCT+TGG | - | chr2_3:8928061-8928080 | Msa0276650:CDS | 30.0% | |
| CACTAAGCAAATCGAGAAAA+AGG | - | chr2_3:8926881-8926900 | Msa0276650:CDS | 35.0% | |
| ACATAATAACCAAACGGCAT+TGG | - | chr2_3:8927037-8927056 | Msa0276650:intron | 35.0% | |
| TATGGACAGAAACCCATTAA+AGG | - | chr2_3:8927113-8927132 | Msa0276650:intron | 35.0% | |
| ATGGACAGAAACCCATTAAA+GGG | - | chr2_3:8927114-8927133 | Msa0276650:intron | 35.0% | |
| ! | TTTTGAATGTGTGTGAACCT+TGG | + | chr2_3:8927149-8927168 | None:intergenic | 35.0% |
| TTTAAATGTGCAGCTCATTG+TGG | + | chr2_3:8927390-8927409 | None:intergenic | 35.0% | |
| ! | TTTTCTACCTTTCTTCTTGC+TGG | + | chr2_3:8927636-8927655 | None:intergenic | 35.0% |
| ! | AAACCTAAATTTGTGATGGG+AGG | + | chr2_3:8927751-8927770 | None:intergenic | 35.0% |
| GGCAAACCTAAATTTGTGAT+GGG | + | chr2_3:8927754-8927773 | None:intergenic | 35.0% | |
| AGGCAAACCTAAATTTGTGA+TGG | + | chr2_3:8927755-8927774 | None:intergenic | 35.0% | |
| ! | AAATTTAGGTTTGCCTAACG+TGG | - | chr2_3:8927759-8927778 | Msa0276650:CDS | 35.0% |
| GATGTTGTAGTTTGATCATC+CGG | - | chr2_3:8927783-8927802 | Msa0276650:CDS | 35.0% | |
| TGATTGATCAACGAGAACAT+GGG | + | chr2_3:8927821-8927840 | None:intergenic | 35.0% | |
| TTGATTGATCAACGAGAACA+TGG | + | chr2_3:8927822-8927841 | None:intergenic | 35.0% | |
| AAACATCCCTTATCCAGAAA+TGG | - | chr2_3:8927840-8927859 | Msa0276650:intron | 35.0% | |
| ACCCAAGTTTCTAACATTTG+TGG | + | chr2_3:8927911-8927930 | None:intergenic | 35.0% | |
| !! | AACTTGCCTTATTCTGAAAC+TGG | - | chr2_3:8928003-8928022 | Msa0276650:CDS | 35.0% |
| CACTAAGCAAATCGAGAAAA+AGG | - | chr2_3:8926881-8926900 | Msa0276650:CDS | 35.0% | |
| ACATAATAACCAAACGGCAT+TGG | - | chr2_3:8927037-8927056 | Msa0276650:intron | 35.0% | |
| TATGGACAGAAACCCATTAA+AGG | - | chr2_3:8927113-8927132 | Msa0276650:intron | 35.0% | |
| ATGGACAGAAACCCATTAAA+GGG | - | chr2_3:8927114-8927133 | Msa0276650:intron | 35.0% | |
| ! | TTTTGAATGTGTGTGAACCT+TGG | + | chr2_3:8927149-8927168 | None:intergenic | 35.0% |
| TTTAAATGTGCAGCTCATTG+TGG | + | chr2_3:8927390-8927409 | None:intergenic | 35.0% | |
| ! | TTTTCTACCTTTCTTCTTGC+TGG | + | chr2_3:8927636-8927655 | None:intergenic | 35.0% |
| ! | AAACCTAAATTTGTGATGGG+AGG | + | chr2_3:8927751-8927770 | None:intergenic | 35.0% |
| GGCAAACCTAAATTTGTGAT+GGG | + | chr2_3:8927754-8927773 | None:intergenic | 35.0% | |
| AGGCAAACCTAAATTTGTGA+TGG | + | chr2_3:8927755-8927774 | None:intergenic | 35.0% | |
| ! | AAATTTAGGTTTGCCTAACG+TGG | - | chr2_3:8927759-8927778 | Msa0276650:CDS | 35.0% |
| GATGTTGTAGTTTGATCATC+CGG | - | chr2_3:8927783-8927802 | Msa0276650:CDS | 35.0% | |
| TGATTGATCAACGAGAACAT+GGG | + | chr2_3:8927821-8927840 | None:intergenic | 35.0% | |
| TTGATTGATCAACGAGAACA+TGG | + | chr2_3:8927822-8927841 | None:intergenic | 35.0% | |
| AAACATCCCTTATCCAGAAA+TGG | - | chr2_3:8927840-8927859 | Msa0276650:intron | 35.0% | |
| ACCCAAGTTTCTAACATTTG+TGG | + | chr2_3:8927911-8927930 | None:intergenic | 35.0% | |
| !! | AACTTGCCTTATTCTGAAAC+TGG | - | chr2_3:8928003-8928022 | Msa0276650:CDS | 35.0% |
| TCAATGCATGCAACAGGTTT+GGG | + | chr2_3:8926814-8926833 | None:intergenic | 40.0% | |
| ATCAATGCATGCAACAGGTT+TGG | + | chr2_3:8926815-8926834 | None:intergenic | 40.0% | |
| GTGATATCAATGCATGCAAC+AGG | + | chr2_3:8926820-8926839 | None:intergenic | 40.0% | |
| ! | GATTTGCTTAGTGCAACTGA+TGG | + | chr2_3:8926874-8926893 | None:intergenic | 40.0% |
| ATGAGCTTTCAAAAGACTCG+TGG | - | chr2_3:8927078-8927097 | Msa0276650:intron | 40.0% | |
| TGAGCTTTCAAAAGACTCGT+GGG | - | chr2_3:8927079-8927098 | Msa0276650:intron | 40.0% | |
| ! | ATGTTTAAAACTCGAGGGTG+CGG | + | chr2_3:8927243-8927262 | None:intergenic | 40.0% |
| GCTCATTGTGGATAATTGAG+TGG | + | chr2_3:8927378-8927397 | None:intergenic | 40.0% | |
| AGATTGTCCAGCAAGAAGAA+AGG | - | chr2_3:8927626-8927645 | Msa0276650:intron | 40.0% | |
| GTACCTCCCATCACAAATTT+AGG | - | chr2_3:8927745-8927764 | Msa0276650:CDS | 40.0% | |
| AACTACAACATCACCACGTT+AGG | + | chr2_3:8927775-8927794 | None:intergenic | 40.0% | |
| ! | AGCAATGCTCAAGTTGTTGT+CGG | - | chr2_3:8927973-8927992 | Msa0276650:CDS | 40.0% |
| TCAATGCATGCAACAGGTTT+GGG | + | chr2_3:8926814-8926833 | None:intergenic | 40.0% | |
| ATCAATGCATGCAACAGGTT+TGG | + | chr2_3:8926815-8926834 | None:intergenic | 40.0% | |
| GTGATATCAATGCATGCAAC+AGG | + | chr2_3:8926820-8926839 | None:intergenic | 40.0% | |
| ! | GATTTGCTTAGTGCAACTGA+TGG | + | chr2_3:8926874-8926893 | None:intergenic | 40.0% |
| ATGAGCTTTCAAAAGACTCG+TGG | - | chr2_3:8927078-8927097 | Msa0276650:intron | 40.0% | |
| TGAGCTTTCAAAAGACTCGT+GGG | - | chr2_3:8927079-8927098 | Msa0276650:intron | 40.0% | |
| ! | ATGTTTAAAACTCGAGGGTG+CGG | + | chr2_3:8927243-8927262 | None:intergenic | 40.0% |
| GCTCATTGTGGATAATTGAG+TGG | + | chr2_3:8927378-8927397 | None:intergenic | 40.0% | |
| AGATTGTCCAGCAAGAAGAA+AGG | - | chr2_3:8927626-8927645 | Msa0276650:intron | 40.0% | |
| GTACCTCCCATCACAAATTT+AGG | - | chr2_3:8927745-8927764 | Msa0276650:CDS | 40.0% | |
| AACTACAACATCACCACGTT+AGG | + | chr2_3:8927775-8927794 | None:intergenic | 40.0% | |
| ! | AGCAATGCTCAAGTTGTTGT+CGG | - | chr2_3:8927973-8927992 | Msa0276650:CDS | 40.0% |
| TATAGCACACCAATGCCGTT+TGG | + | chr2_3:8927049-8927068 | None:intergenic | 45.0% | |
| TTTCAAAAGACTCGTGGGCA+TGG | - | chr2_3:8927084-8927103 | Msa0276650:intron | 45.0% | |
| GGATGTGGAGACCCTTTAAT+GGG | + | chr2_3:8927128-8927147 | None:intergenic | 45.0% | |
| TGGATGTGGAGACCCTTTAA+TGG | + | chr2_3:8927129-8927148 | None:intergenic | 45.0% | |
| TTAAAGGGTCTCCACATCCA+AGG | - | chr2_3:8927129-8927148 | Msa0276650:intron | 45.0% | |
| ATGTGTGTGAACCTTGGATG+TGG | + | chr2_3:8927143-8927162 | None:intergenic | 45.0% | |
| !! | AGGGTGCGGTTGTTTGTTTT+AGG | + | chr2_3:8927229-8927248 | None:intergenic | 45.0% |
| ! | ACTTGAGCATTGCTACTCTG+TGG | + | chr2_3:8927967-8927986 | None:intergenic | 45.0% |
| ! | AGAATAGAGCACCACCATTG+AGG | + | chr2_3:8928116-8928135 | None:intergenic | 45.0% |
| TATAGCACACCAATGCCGTT+TGG | + | chr2_3:8927049-8927068 | None:intergenic | 45.0% | |
| TTTCAAAAGACTCGTGGGCA+TGG | - | chr2_3:8927084-8927103 | Msa0276650:intron | 45.0% | |
| GGATGTGGAGACCCTTTAAT+GGG | + | chr2_3:8927128-8927147 | None:intergenic | 45.0% | |
| TGGATGTGGAGACCCTTTAA+TGG | + | chr2_3:8927129-8927148 | None:intergenic | 45.0% | |
| TTAAAGGGTCTCCACATCCA+AGG | - | chr2_3:8927129-8927148 | Msa0276650:intron | 45.0% | |
| ATGTGTGTGAACCTTGGATG+TGG | + | chr2_3:8927143-8927162 | None:intergenic | 45.0% | |
| !! | AGGGTGCGGTTGTTTGTTTT+AGG | + | chr2_3:8927229-8927248 | None:intergenic | 45.0% |
| ! | ACTTGAGCATTGCTACTCTG+TGG | + | chr2_3:8927967-8927986 | None:intergenic | 45.0% |
| ! | AGAATAGAGCACCACCATTG+AGG | + | chr2_3:8928116-8928135 | None:intergenic | 45.0% |
| !! | AAATAATATCAATTTATTAT+TGG | - | chr2_3:8927410-8927429 | Msa0276650:intron | 5.0% |
| !! | ATTAAAAAAGTTATTTATTA+GGG | + | chr2_3:8927485-8927504 | None:intergenic | 5.0% |
| !! | AAATAATATCAATTTATTAT+TGG | - | chr2_3:8927410-8927429 | Msa0276650:intron | 5.0% |
| !! | ATTAAAAAAGTTATTTATTA+GGG | + | chr2_3:8927485-8927504 | None:intergenic | 5.0% |
| ! | GTTGTTGTTCCGCGAGTGTT+AGG | + | chr2_3:8926756-8926775 | None:intergenic | 50.0% |
| TCGTGGGCATGGAGGAAATA+TGG | - | chr2_3:8927095-8927114 | Msa0276650:intron | 50.0% | |
| TTACCCGTTGTCGAAGAAGC+TGG | - | chr2_3:8927880-8927899 | Msa0276650:intron | 50.0% | |
| TACCCGTTGTCGAAGAAGCT+GGG | - | chr2_3:8927881-8927900 | Msa0276650:intron | 50.0% | |
| TGACCCAGCTTCTTCGACAA+CGG | + | chr2_3:8927887-8927906 | None:intergenic | 50.0% | |
| ATGGACTTCAACCGCCTCAA+TGG | - | chr2_3:8928099-8928118 | Msa0276650:CDS | 50.0% | |
| ! | ATAGAGCACCACCATTGAGG+CGG | + | chr2_3:8928113-8928132 | None:intergenic | 50.0% |
| ! | GTTGTTGTTCCGCGAGTGTT+AGG | + | chr2_3:8926756-8926775 | None:intergenic | 50.0% |
| TCGTGGGCATGGAGGAAATA+TGG | - | chr2_3:8927095-8927114 | Msa0276650:intron | 50.0% | |
| TTACCCGTTGTCGAAGAAGC+TGG | - | chr2_3:8927880-8927899 | Msa0276650:intron | 50.0% | |
| TACCCGTTGTCGAAGAAGCT+GGG | - | chr2_3:8927881-8927900 | Msa0276650:intron | 50.0% | |
| TGACCCAGCTTCTTCGACAA+CGG | + | chr2_3:8927887-8927906 | None:intergenic | 50.0% | |
| ATGGACTTCAACCGCCTCAA+TGG | - | chr2_3:8928099-8928118 | Msa0276650:CDS | 50.0% | |
| ! | ATAGAGCACCACCATTGAGG+CGG | + | chr2_3:8928113-8928132 | None:intergenic | 50.0% |
| CAAAAGACTCGTGGGCATGG+AGG | - | chr2_3:8927087-8927106 | Msa0276650:intron | 55.0% | |
| ! | ACATGGGCATTGCTGCTCTC+CGG | + | chr2_3:8927805-8927824 | None:intergenic | 55.0% |
| GACCCAGCTTCTTCGACAAC+GGG | + | chr2_3:8927886-8927905 | None:intergenic | 55.0% | |
| GACTTCAACCGCCTCAATGG+TGG | - | chr2_3:8928102-8928121 | Msa0276650:CDS | 55.0% | |
| CAAAAGACTCGTGGGCATGG+AGG | - | chr2_3:8927087-8927106 | Msa0276650:intron | 55.0% | |
| ! | ACATGGGCATTGCTGCTCTC+CGG | + | chr2_3:8927805-8927824 | None:intergenic | 55.0% |
| GACCCAGCTTCTTCGACAAC+GGG | + | chr2_3:8927886-8927905 | None:intergenic | 55.0% | |
| GACTTCAACCGCCTCAATGG+TGG | - | chr2_3:8928102-8928121 | Msa0276650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8926700 | 8928140 | 8926700 | ID=Msa0276650;Name=Msa0276650 |
| chr2_3 | mRNA | 8926700 | 8928140 | 8926700 | ID=Msa0276650-mRNA-1;Parent=Msa0276650;Name=Msa0276650-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|4|0|211 |
| chr2_3 | exon | 8927938 | 8928140 | 8927938 | ID=Msa0276650-mRNA-1:exon:4116;Parent=Msa0276650-mRNA-1 |
| chr2_3 | exon | 8927690 | 8927806 | 8927690 | ID=Msa0276650-mRNA-1:exon:4115;Parent=Msa0276650-mRNA-1 |
| chr2_3 | exon | 8927193 | 8927241 | 8927193 | ID=Msa0276650-mRNA-1:exon:4114;Parent=Msa0276650-mRNA-1 |
| chr2_3 | exon | 8926700 | 8926966 | 8926700 | ID=Msa0276650-mRNA-1:exon:4113;Parent=Msa0276650-mRNA-1 |
| chr2_3 | CDS | 8927938 | 8928140 | 8927938 | ID=Msa0276650-mRNA-1:cds;Parent=Msa0276650-mRNA-1 |
| chr2_3 | CDS | 8927690 | 8927806 | 8927690 | ID=Msa0276650-mRNA-1:cds;Parent=Msa0276650-mRNA-1 |
| chr2_3 | CDS | 8927193 | 8927241 | 8927193 | ID=Msa0276650-mRNA-1:cds;Parent=Msa0276650-mRNA-1 |
| chr2_3 | CDS | 8926700 | 8926966 | 8926700 | ID=Msa0276650-mRNA-1:cds;Parent=Msa0276650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
