Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277090 | ONK65199.1 | 43.333 | 300 | 113 | 5 | 3 | 267 | 482 | 759 | 5.66e-62 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277090 | sp|C0LGQ9|GHR1_ARATH | 65.487 | 113 | 34 | 1 | 160 | 267 | 849 | 961 | 2.25e-41 | 155 |
| Msa0277090 | sp|C0LGQ9|GHR1_ARATH | 38.220 | 191 | 87 | 6 | 1 | 188 | 474 | 636 | 1.39e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277090 | A0A5P1EK71 | 43.333 | 300 | 113 | 5 | 3 | 267 | 482 | 759 | 2.70e-62 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277090 | MtrunA17_Chr2g0292521 | 62.434 | 189 | 47 | 4 | 1 | 188 | 478 | 643 | 1.73e-60 | 206 |
| Msa0277090 | MtrunA17_Chr2g0292521 | 70.796 | 113 | 28 | 1 | 160 | 267 | 863 | 975 | 2.32e-45 | 163 |
| Msa0277090 | MtrunA17_Chr2g0316131 | 53.000 | 100 | 30 | 1 | 167 | 266 | 8 | 90 | 4.25e-26 | 99.4 |
| Msa0277090 | MtrunA17_Chr2g0316171 | 53.000 | 100 | 30 | 1 | 167 | 266 | 8 | 90 | 4.25e-26 | 99.4 |
| Msa0277090 | MtrunA17_Chr2g0290031 | 92.308 | 52 | 4 | 0 | 108 | 159 | 13 | 64 | 5.91e-26 | 97.8 |
| Msa0277090 | MtrunA17_Chr3g0129081 | 50.427 | 117 | 50 | 3 | 151 | 267 | 834 | 942 | 1.17e-25 | 106 |
| Msa0277090 | MtrunA17_Chr3g0129081 | 32.386 | 176 | 96 | 6 | 32 | 187 | 411 | 583 | 3.92e-16 | 78.2 |
| Msa0277090 | MtrunA17_Chr5g0440581 | 48.387 | 93 | 48 | 0 | 175 | 267 | 809 | 901 | 8.41e-24 | 100 |
| Msa0277090 | MtrunA17_Chr5g0440581 | 29.412 | 204 | 123 | 6 | 3 | 188 | 374 | 574 | 1.08e-11 | 65.1 |
| Msa0277090 | MtrunA17_Chr5g0437741 | 43.617 | 94 | 50 | 2 | 178 | 271 | 594 | 684 | 7.14e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277090 | AT4G20940.1 | 65.487 | 113 | 34 | 1 | 160 | 267 | 833 | 945 | 2.68e-42 | 154 |
| Msa0277090 | AT4G20940.1 | 38.220 | 191 | 87 | 6 | 1 | 188 | 458 | 620 | 1.66e-26 | 108 |
| Msa0277090 | AT5G10020.1 | 54.839 | 93 | 41 | 1 | 175 | 267 | 867 | 958 | 2.34e-26 | 108 |
| Msa0277090 | AT5G10020.1 | 30.319 | 188 | 111 | 5 | 16 | 186 | 420 | 604 | 6.15e-18 | 84.0 |
| Msa0277090 | AT5G10020.2 | 54.839 | 93 | 41 | 1 | 175 | 267 | 819 | 910 | 2.43e-26 | 108 |
| Msa0277090 | AT5G10020.2 | 30.319 | 188 | 111 | 5 | 16 | 186 | 372 | 556 | 5.04e-18 | 84.3 |
| Msa0277090 | AT2G27060.3 | 48.315 | 89 | 46 | 0 | 179 | 267 | 741 | 829 | 3.46e-21 | 93.6 |
| Msa0277090 | AT2G27060.1 | 48.315 | 89 | 46 | 0 | 179 | 267 | 834 | 922 | 4.58e-21 | 93.2 |
| Msa0277090 | AT3G51740.1 | 40.625 | 96 | 54 | 2 | 176 | 271 | 634 | 726 | 3.29e-11 | 63.9 |
Find 51 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACACATTTATAGCTTTA+AGG | 0.096850 | 2_3:+9444631 | None:intergenic |
| GGTCCCTTTGGCATGTTATT+TGG | 0.175979 | 2_3:+9446007 | None:intergenic |
| CCTAGTTCTTCTTTCTTTCC+TGG | 0.191065 | 2_3:-9445920 | Msa0277090:CDS |
| TTCAGAAGCATTGAAGTCTT+TGG | 0.231551 | 2_3:+9445985 | None:intergenic |
| GTTGATCCAGGAGTACTATT+TGG | 0.268060 | 2_3:+9445878 | None:intergenic |
| CAGCAATGTTGAGCACTCTT+AGG | 0.296171 | 2_3:+9446251 | None:intergenic |
| GCTTCTGAAAATGATATATC+TGG | 0.317824 | 2_3:-9445971 | Msa0277090:CDS |
| ATTGAAAAGATTCTTGATAC+TGG | 0.323331 | 2_3:-9444537 | Msa0277090:CDS |
| GGGGAACAACTCGGTCAAAA+TGG | 0.327539 | 2_3:+9444661 | None:intergenic |
| CTAGTTCTTCTTTCTTTCCT+GGG | 0.337581 | 2_3:-9445919 | Msa0277090:CDS |
| TCAGAAGCATTGAAGTCTTT+GGG | 0.345213 | 2_3:+9445986 | None:intergenic |
| ATTCTTGATACTGGTGCCTT+AGG | 0.351134 | 2_3:-9444528 | Msa0277090:CDS |
| CTTCTTTGAAGCAGCTAACT+TGG | 0.356377 | 2_3:+9444494 | None:intergenic |
| TTGAAGTCTTTGGGTCCCTT+TGG | 0.373031 | 2_3:+9445995 | None:intergenic |
| GATAATGATCCAAACTCATT+AGG | 0.379748 | 2_3:+9446157 | None:intergenic |
| GATAATGATCCAAACTCATT+AGG | 0.379748 | 2_3:+9446277 | None:intergenic |
| ATTGCTGGAAATAACTTTGT+TGG | 0.394928 | 2_3:-9446115 | Msa0277090:CDS |
| CTAAGAGTGCTCAACATTGC+TGG | 0.401194 | 2_3:-9446250 | Msa0277090:CDS |
| TTAAGAGTGCTCAACATTGC+TGG | 0.413947 | 2_3:-9446130 | Msa0277090:CDS |
| TTCTTTGAAGCAGCTAACTT+GGG | 0.433499 | 2_3:+9444495 | None:intergenic |
| AAACGATATTTGATATGTAA+AGG | 0.440372 | 2_3:+9446043 | None:intergenic |
| AACGATATTTGATATGTAAA+GGG | 0.442609 | 2_3:+9446044 | None:intergenic |
| TTTGGCATGTTATTTGGAAG+TGG | 0.446569 | 2_3:+9446013 | None:intergenic |
| AGCATAAACATCTGAGTTGA+AGG | 0.446971 | 2_3:+9444461 | None:intergenic |
| TTAGGCGAAACGGTTGATCC+AGG | 0.451112 | 2_3:+9445866 | None:intergenic |
| GGAACTTTCGTTAGGCGAAA+CGG | 0.461834 | 2_3:+9445856 | None:intergenic |
| CCAGGAAAGAAAGAAGAACT+AGG | 0.477483 | 2_3:+9445920 | None:intergenic |
| TTTCCCTTGGAACTTTCGTT+AGG | 0.481127 | 2_3:+9445848 | None:intergenic |
| GGTCAAAATGGAGATAGTTC+AGG | 0.486146 | 2_3:+9444673 | None:intergenic |
| TTATAGCTTTAAGGTTTCCA+TGG | 0.490387 | 2_3:+9444640 | None:intergenic |
| AGATGGAGCTCTTGTAATGT+TGG | 0.500488 | 2_3:+9446343 | None:intergenic |
| TATAGCTTTAAGGTTTCCAT+GGG | 0.507066 | 2_3:+9444641 | None:intergenic |
| TACCAGCTTGAGTCATAAGT+TGG | 0.523324 | 2_3:+9444562 | None:intergenic |
| TGTGGACATAGACTTTCCCT+TGG | 0.523714 | 2_3:+9445835 | None:intergenic |
| GTCATGTCAGCAATAGCGGT+TGG | 0.551399 | 2_3:+9446085 | None:intergenic |
| AAATGTAACTTAGCATTCCC+AGG | 0.553430 | 2_3:+9445902 | None:intergenic |
| TTCGCCTAACGAAAGTTCCA+AGG | 0.556968 | 2_3:-9445852 | Msa0277090:CDS |
| CACCAACTTATGACTCAAGC+TGG | 0.557119 | 2_3:-9444564 | Msa0277090:CDS |
| TTTGACCGAGTTGTTCCCCA+TGG | 0.559139 | 2_3:-9444657 | Msa0277090:CDS |
| TCTGAGTTGAAGGAAGGCAT+TGG | 0.567808 | 2_3:+9444471 | None:intergenic |
| CTTGGGTGCGTGATAACCTA+AGG | 0.568146 | 2_3:+9444512 | None:intergenic |
| CATGTTATTTGGAAGTGGAC+TGG | 0.568511 | 2_3:+9446018 | None:intergenic |
| GGTTTCCATGGGGAACAACT+CGG | 0.571507 | 2_3:+9444652 | None:intergenic |
| CTTCCAAATAACATGCCAAA+GGG | 0.574236 | 2_3:-9446010 | Msa0277090:CDS |
| CAGGAAAGAAAGAAGAACTA+GGG | 0.576658 | 2_3:+9445921 | None:intergenic |
| ATGAGTCATGTCAGCAATAG+CGG | 0.589893 | 2_3:+9446081 | None:intergenic |
| TAAACATCTGAGTTGAAGGA+AGG | 0.617654 | 2_3:+9444465 | None:intergenic |
| ACTTCCAAATAACATGCCAA+AGG | 0.629895 | 2_3:-9446011 | Msa0277090:CDS |
| TCGCCTAACGAAAGTTCCAA+GGG | 0.633386 | 2_3:-9445851 | Msa0277090:CDS |
| CTAGCAGTTGACGTAGCATG+TGG | 0.650949 | 2_3:-9444696 | Msa0277090:CDS |
| ATAGCTTTAAGGTTTCCATG+GGG | 0.763929 | 2_3:+9444642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATAAAAATTAGATATA+AGG | + | chr2_3:9445727-9445746 | None:intergenic | 10.0% |
| !! | ATGTATAAAAATTAGATATA+AGG | + | chr2_3:9445727-9445746 | None:intergenic | 10.0% |
| !!! | AGATCAAATTATTTTCAAGA+TGG | + | chr2_3:9444469-9444488 | None:intergenic | 20.0% |
| !!! | AGATCAAATTATTTTCAAGA+TGG | + | chr2_3:9444469-9444488 | None:intergenic | 20.0% |
| !! | AACGATATTTGATATGTAAA+GGG | + | chr2_3:9444751-9444770 | None:intergenic | 20.0% |
| !! | AAACGATATTTGATATGTAA+AGG | + | chr2_3:9444752-9444771 | None:intergenic | 20.0% |
| !!! | GGAATTTTCTAAGAATTTTT+GGG | + | chr2_3:9444853-9444872 | None:intergenic | 20.0% |
| !!! | TCTTTTCATATTAATCTTAC+TGG | - | chr2_3:9445014-9445033 | Msa0277090:intron | 20.0% |
| !!! | GAAGAATTTTTTAATTAAGC+AGG | + | chr2_3:9445681-9445700 | None:intergenic | 20.0% |
| !!! | AGATCAAATTATTTTCAAGA+TGG | + | chr2_3:9444469-9444488 | None:intergenic | 20.0% |
| !!! | AGATCAAATTATTTTCAAGA+TGG | + | chr2_3:9444469-9444488 | None:intergenic | 20.0% |
| !! | AACGATATTTGATATGTAAA+GGG | + | chr2_3:9444751-9444770 | None:intergenic | 20.0% |
| !! | AAACGATATTTGATATGTAA+AGG | + | chr2_3:9444752-9444771 | None:intergenic | 20.0% |
| !!! | GGAATTTTCTAAGAATTTTT+GGG | + | chr2_3:9444853-9444872 | None:intergenic | 20.0% |
| !!! | TCTTTTCATATTAATCTTAC+TGG | - | chr2_3:9445014-9445033 | Msa0277090:intron | 20.0% |
| !!! | GAAGAATTTTTTAATTAAGC+AGG | + | chr2_3:9445681-9445700 | None:intergenic | 20.0% |
| ! | TTAGGAAAAAAGCTACTAAT+TGG | + | chr2_3:9444500-9444519 | None:intergenic | 25.0% |
| ! | TTAGGAAAAAAGCTACTAAT+TGG | + | chr2_3:9444500-9444519 | None:intergenic | 25.0% |
| !!! | GGGAATTTTCTAAGAATTTT+TGG | + | chr2_3:9444854-9444873 | None:intergenic | 25.0% |
| ! | CTATGATTATTACTTAACTG+TGG | + | chr2_3:9444978-9444997 | None:intergenic | 25.0% |
| ! | TCATGGCTAATTATTTATGA+TGG | + | chr2_3:9445213-9445232 | None:intergenic | 25.0% |
| !!! | CATTTTCTTGATGATACTTT+AGG | - | chr2_3:9445374-9445393 | Msa0277090:intron | 25.0% |
| !!! | AAGAGTTTGTTAAAGAGATA+AGG | - | chr2_3:9445531-9445550 | Msa0277090:intron | 25.0% |
| ! | GAAATAAAACTAGAGTTGTT+TGG | - | chr2_3:9445591-9445610 | Msa0277090:intron | 25.0% |
| !!! | AAAAAATCTAAGGCTTTGTT+TGG | + | chr2_3:9445812-9445831 | None:intergenic | 25.0% |
| !!! | CAAAGCCTTAGATTTTTTTT+TGG | - | chr2_3:9445814-9445833 | Msa0277090:intron | 25.0% |
| ! | GGAAACCAAAAAAAAATCTA+AGG | + | chr2_3:9445822-9445841 | None:intergenic | 25.0% |
| !!! | TAGATTTTTTTTTGGTTTCC+AGG | - | chr2_3:9445822-9445841 | Msa0277090:intron | 25.0% |
| !! | ACAACACATTTATAGCTTTA+AGG | + | chr2_3:9446164-9446183 | None:intergenic | 25.0% |
| ! | ATTGAAAAGATTCTTGATAC+TGG | - | chr2_3:9446255-9446274 | Msa0277090:CDS | 25.0% |
| ! | TTAGGAAAAAAGCTACTAAT+TGG | + | chr2_3:9444500-9444519 | None:intergenic | 25.0% |
| ! | TTAGGAAAAAAGCTACTAAT+TGG | + | chr2_3:9444500-9444519 | None:intergenic | 25.0% |
| !!! | GGGAATTTTCTAAGAATTTT+TGG | + | chr2_3:9444854-9444873 | None:intergenic | 25.0% |
| ! | CTATGATTATTACTTAACTG+TGG | + | chr2_3:9444978-9444997 | None:intergenic | 25.0% |
| ! | TCATGGCTAATTATTTATGA+TGG | + | chr2_3:9445213-9445232 | None:intergenic | 25.0% |
| !!! | CATTTTCTTGATGATACTTT+AGG | - | chr2_3:9445374-9445393 | Msa0277090:intron | 25.0% |
| !!! | AAGAGTTTGTTAAAGAGATA+AGG | - | chr2_3:9445531-9445550 | Msa0277090:intron | 25.0% |
| ! | GAAATAAAACTAGAGTTGTT+TGG | - | chr2_3:9445591-9445610 | Msa0277090:intron | 25.0% |
| !!! | AAAAAATCTAAGGCTTTGTT+TGG | + | chr2_3:9445812-9445831 | None:intergenic | 25.0% |
| !!! | CAAAGCCTTAGATTTTTTTT+TGG | - | chr2_3:9445814-9445833 | Msa0277090:intron | 25.0% |
| ! | GGAAACCAAAAAAAAATCTA+AGG | + | chr2_3:9445822-9445841 | None:intergenic | 25.0% |
| !!! | TAGATTTTTTTTTGGTTTCC+AGG | - | chr2_3:9445822-9445841 | Msa0277090:intron | 25.0% |
| !! | ACAACACATTTATAGCTTTA+AGG | + | chr2_3:9446164-9446183 | None:intergenic | 25.0% |
| ! | ATTGAAAAGATTCTTGATAC+TGG | - | chr2_3:9446255-9446274 | Msa0277090:CDS | 25.0% |
| !!! | AGCTTTTTTCCTAATGAGTT+TGG | - | chr2_3:9444506-9444525 | Msa0277090:CDS | 30.0% |
| GATAATGATCCAAACTCATT+AGG | + | chr2_3:9444518-9444537 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTCCTAATGAGTT+TGG | - | chr2_3:9444506-9444525 | Msa0277090:CDS | 30.0% |
| GATAATGATCCAAACTCATT+AGG | + | chr2_3:9444518-9444537 | None:intergenic | 30.0% | |
| ATTGCTGGAAATAACTTTGT+TGG | - | chr2_3:9444677-9444696 | Msa0277090:CDS | 30.0% | |
| ! | GCTTCTGAAAATGATATATC+TGG | - | chr2_3:9444821-9444840 | Msa0277090:intron | 30.0% |
| AATAATCATAGTTTCATGCG+TGG | - | chr2_3:9444987-9445006 | Msa0277090:intron | 30.0% | |
| !! | TATAGCTTTAAGGTTTCCAT+GGG | + | chr2_3:9446154-9446173 | None:intergenic | 30.0% |
| !! | TTATAGCTTTAAGGTTTCCA+TGG | + | chr2_3:9446155-9446174 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTCCTAATGAGTT+TGG | - | chr2_3:9444506-9444525 | Msa0277090:CDS | 30.0% |
| GATAATGATCCAAACTCATT+AGG | + | chr2_3:9444518-9444537 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTCCTAATGAGTT+TGG | - | chr2_3:9444506-9444525 | Msa0277090:CDS | 30.0% |
| GATAATGATCCAAACTCATT+AGG | + | chr2_3:9444518-9444537 | None:intergenic | 30.0% | |
| ATTGCTGGAAATAACTTTGT+TGG | - | chr2_3:9444677-9444696 | Msa0277090:CDS | 30.0% | |
| ! | GCTTCTGAAAATGATATATC+TGG | - | chr2_3:9444821-9444840 | Msa0277090:intron | 30.0% |
| AATAATCATAGTTTCATGCG+TGG | - | chr2_3:9444987-9445006 | Msa0277090:intron | 30.0% | |
| !! | TATAGCTTTAAGGTTTCCAT+GGG | + | chr2_3:9446154-9446173 | None:intergenic | 30.0% |
| !! | TTATAGCTTTAAGGTTTCCA+TGG | + | chr2_3:9446155-9446174 | None:intergenic | 30.0% |
| ! | TTTGGCATGTTATTTGGAAG+TGG | + | chr2_3:9444782-9444801 | None:intergenic | 35.0% |
| ACTTCCAAATAACATGCCAA+AGG | - | chr2_3:9444781-9444800 | Msa0277090:intron | 35.0% | |
| CTTCCAAATAACATGCCAAA+GGG | - | chr2_3:9444782-9444801 | Msa0277090:intron | 35.0% | |
| !! | TCAGAAGCATTGAAGTCTTT+GGG | + | chr2_3:9444809-9444828 | None:intergenic | 35.0% |
| !! | TTCAGAAGCATTGAAGTCTT+TGG | + | chr2_3:9444810-9444829 | None:intergenic | 35.0% |
| CAGGAAAGAAAGAAGAACTA+GGG | + | chr2_3:9444874-9444893 | None:intergenic | 35.0% | |
| ! | CTAGTTCTTCTTTCTTTCCT+GGG | - | chr2_3:9444873-9444892 | Msa0277090:intron | 35.0% |
| AAATGTAACTTAGCATTCCC+AGG | + | chr2_3:9444893-9444912 | None:intergenic | 35.0% | |
| ! | CATTTTCCAAATAGTACTCC+TGG | - | chr2_3:9444908-9444927 | Msa0277090:intron | 35.0% |
| !!! | CAACTGCAGTTTTTTCATCA+TGG | + | chr2_3:9445230-9445249 | None:intergenic | 35.0% |
| TGATGAAAAAACTGCAGTTG+TGG | - | chr2_3:9445230-9445249 | Msa0277090:intron | 35.0% | |
| AGTCAATGAATCACCAAACT+CGG | + | chr2_3:9445297-9445316 | None:intergenic | 35.0% | |
| ATCTTACAAGACTAGATACG+AGG | - | chr2_3:9445324-9445343 | Msa0277090:intron | 35.0% | |
| ACTACTTCTTCCCAAAACTT+CGG | + | chr2_3:9445418-9445437 | None:intergenic | 35.0% | |
| TACATGGCAACTTTGGATAA+TGG | - | chr2_3:9445450-9445469 | Msa0277090:intron | 35.0% | |
| CTTTAATTCTCTGATCGACT+AGG | - | chr2_3:9446033-9446052 | Msa0277090:CDS | 35.0% | |
| !! | ATAGCTTTAAGGTTTCCATG+GGG | + | chr2_3:9446153-9446172 | None:intergenic | 35.0% |
| !! | TTCTTTGAAGCAGCTAACTT+GGG | + | chr2_3:9446300-9446319 | None:intergenic | 35.0% |
| ! | TAAACATCTGAGTTGAAGGA+AGG | + | chr2_3:9446330-9446349 | None:intergenic | 35.0% |
| ! | AGCATAAACATCTGAGTTGA+AGG | + | chr2_3:9446334-9446353 | None:intergenic | 35.0% |
| ! | TTTGGCATGTTATTTGGAAG+TGG | + | chr2_3:9444782-9444801 | None:intergenic | 35.0% |
| ACTTCCAAATAACATGCCAA+AGG | - | chr2_3:9444781-9444800 | Msa0277090:intron | 35.0% | |
| CTTCCAAATAACATGCCAAA+GGG | - | chr2_3:9444782-9444801 | Msa0277090:intron | 35.0% | |
| !! | TCAGAAGCATTGAAGTCTTT+GGG | + | chr2_3:9444809-9444828 | None:intergenic | 35.0% |
| !! | TTCAGAAGCATTGAAGTCTT+TGG | + | chr2_3:9444810-9444829 | None:intergenic | 35.0% |
| CAGGAAAGAAAGAAGAACTA+GGG | + | chr2_3:9444874-9444893 | None:intergenic | 35.0% | |
| ! | CTAGTTCTTCTTTCTTTCCT+GGG | - | chr2_3:9444873-9444892 | Msa0277090:intron | 35.0% |
| AAATGTAACTTAGCATTCCC+AGG | + | chr2_3:9444893-9444912 | None:intergenic | 35.0% | |
| ! | CATTTTCCAAATAGTACTCC+TGG | - | chr2_3:9444908-9444927 | Msa0277090:intron | 35.0% |
| !!! | CAACTGCAGTTTTTTCATCA+TGG | + | chr2_3:9445230-9445249 | None:intergenic | 35.0% |
| TGATGAAAAAACTGCAGTTG+TGG | - | chr2_3:9445230-9445249 | Msa0277090:intron | 35.0% | |
| AGTCAATGAATCACCAAACT+CGG | + | chr2_3:9445297-9445316 | None:intergenic | 35.0% | |
| ATCTTACAAGACTAGATACG+AGG | - | chr2_3:9445324-9445343 | Msa0277090:intron | 35.0% | |
| ACTACTTCTTCCCAAAACTT+CGG | + | chr2_3:9445418-9445437 | None:intergenic | 35.0% | |
| TACATGGCAACTTTGGATAA+TGG | - | chr2_3:9445450-9445469 | Msa0277090:intron | 35.0% | |
| CTTTAATTCTCTGATCGACT+AGG | - | chr2_3:9446033-9446052 | Msa0277090:CDS | 35.0% | |
| !! | ATAGCTTTAAGGTTTCCATG+GGG | + | chr2_3:9446153-9446172 | None:intergenic | 35.0% |
| !! | TTCTTTGAAGCAGCTAACTT+GGG | + | chr2_3:9446300-9446319 | None:intergenic | 35.0% |
| ! | TAAACATCTGAGTTGAAGGA+AGG | + | chr2_3:9446330-9446349 | None:intergenic | 35.0% |
| ! | AGCATAAACATCTGAGTTGA+AGG | + | chr2_3:9446334-9446353 | None:intergenic | 35.0% |
| AGATGGAGCTCTTGTAATGT+TGG | + | chr2_3:9444452-9444471 | None:intergenic | 40.0% | |
| !! | TTAAGAGTGCTCAACATTGC+TGG | - | chr2_3:9444662-9444681 | Msa0277090:CDS | 40.0% |
| ATGAGTCATGTCAGCAATAG+CGG | + | chr2_3:9444714-9444733 | None:intergenic | 40.0% | |
| ! | CATGTTATTTGGAAGTGGAC+TGG | + | chr2_3:9444777-9444796 | None:intergenic | 40.0% |
| CCAGGAAAGAAAGAAGAACT+AGG | + | chr2_3:9444875-9444894 | None:intergenic | 40.0% | |
| ! | CCTAGTTCTTCTTTCTTTCC+TGG | - | chr2_3:9444872-9444891 | Msa0277090:intron | 40.0% |
| !! | GTTGATCCAGGAGTACTATT+TGG | + | chr2_3:9444917-9444936 | None:intergenic | 40.0% |
| TTTCCCTTGGAACTTTCGTT+AGG | + | chr2_3:9444947-9444966 | None:intergenic | 40.0% | |
| GAAAAGTGGTTGTGCTTTGA+TGG | + | chr2_3:9445267-9445286 | None:intergenic | 40.0% | |
| !! | CAAAGCACAACCACTTTTCA+TGG | - | chr2_3:9445268-9445287 | Msa0277090:intron | 40.0% |
| TCAATGAATCACCAAACTCG+GGG | + | chr2_3:9445295-9445314 | None:intergenic | 40.0% | |
| GTCAATGAATCACCAAACTC+GGG | + | chr2_3:9445296-9445315 | None:intergenic | 40.0% | |
| AAGACTAGATACGAGGTTGT+CGG | - | chr2_3:9445331-9445350 | Msa0277090:intron | 40.0% | |
| AGGTTGTCGGATAGATTGAT+TGG | - | chr2_3:9445344-9445363 | Msa0277090:intron | 40.0% | |
| !!! | GTTTTGGGAAGAAGTAGTCA+CGG | - | chr2_3:9445420-9445439 | Msa0277090:intron | 40.0% |
| TACCTCTTACATGGCAACTT+TGG | - | chr2_3:9445443-9445462 | Msa0277090:intron | 40.0% | |
| ATCCAAAGTTGCCATGTAAG+AGG | + | chr2_3:9445448-9445467 | None:intergenic | 40.0% | |
| TTGAGAGTGAAGTGATTGTC+TGG | - | chr2_3:9445480-9445499 | Msa0277090:intron | 40.0% | |
| ATCTTGTGATCAAAAGCTCC+TGG | + | chr2_3:9445843-9445862 | None:intergenic | 40.0% | |
| GGTCAAAATGGAGATAGTTC+AGG | + | chr2_3:9446122-9446141 | None:intergenic | 40.0% | |
| TACCAGCTTGAGTCATAAGT+TGG | + | chr2_3:9446233-9446252 | None:intergenic | 40.0% | |
| ATTCTTGATACTGGTGCCTT+AGG | - | chr2_3:9446264-9446283 | Msa0277090:CDS | 40.0% | |
| !! | CTTCTTTGAAGCAGCTAACT+TGG | + | chr2_3:9446301-9446320 | None:intergenic | 40.0% |
| AGATGGAGCTCTTGTAATGT+TGG | + | chr2_3:9444452-9444471 | None:intergenic | 40.0% | |
| !! | TTAAGAGTGCTCAACATTGC+TGG | - | chr2_3:9444662-9444681 | Msa0277090:CDS | 40.0% |
| ATGAGTCATGTCAGCAATAG+CGG | + | chr2_3:9444714-9444733 | None:intergenic | 40.0% | |
| ! | CATGTTATTTGGAAGTGGAC+TGG | + | chr2_3:9444777-9444796 | None:intergenic | 40.0% |
| CCAGGAAAGAAAGAAGAACT+AGG | + | chr2_3:9444875-9444894 | None:intergenic | 40.0% | |
| ! | CCTAGTTCTTCTTTCTTTCC+TGG | - | chr2_3:9444872-9444891 | Msa0277090:intron | 40.0% |
| !! | GTTGATCCAGGAGTACTATT+TGG | + | chr2_3:9444917-9444936 | None:intergenic | 40.0% |
| TTTCCCTTGGAACTTTCGTT+AGG | + | chr2_3:9444947-9444966 | None:intergenic | 40.0% | |
| GAAAAGTGGTTGTGCTTTGA+TGG | + | chr2_3:9445267-9445286 | None:intergenic | 40.0% | |
| !! | CAAAGCACAACCACTTTTCA+TGG | - | chr2_3:9445268-9445287 | Msa0277090:intron | 40.0% |
| TCAATGAATCACCAAACTCG+GGG | + | chr2_3:9445295-9445314 | None:intergenic | 40.0% | |
| GTCAATGAATCACCAAACTC+GGG | + | chr2_3:9445296-9445315 | None:intergenic | 40.0% | |
| AAGACTAGATACGAGGTTGT+CGG | - | chr2_3:9445331-9445350 | Msa0277090:intron | 40.0% | |
| AGGTTGTCGGATAGATTGAT+TGG | - | chr2_3:9445344-9445363 | Msa0277090:intron | 40.0% | |
| !!! | GTTTTGGGAAGAAGTAGTCA+CGG | - | chr2_3:9445420-9445439 | Msa0277090:intron | 40.0% |
| TACCTCTTACATGGCAACTT+TGG | - | chr2_3:9445443-9445462 | Msa0277090:intron | 40.0% | |
| ATCCAAAGTTGCCATGTAAG+AGG | + | chr2_3:9445448-9445467 | None:intergenic | 40.0% | |
| TTGAGAGTGAAGTGATTGTC+TGG | - | chr2_3:9445480-9445499 | Msa0277090:intron | 40.0% | |
| ATCTTGTGATCAAAAGCTCC+TGG | + | chr2_3:9445843-9445862 | None:intergenic | 40.0% | |
| GGTCAAAATGGAGATAGTTC+AGG | + | chr2_3:9446122-9446141 | None:intergenic | 40.0% | |
| TACCAGCTTGAGTCATAAGT+TGG | + | chr2_3:9446233-9446252 | None:intergenic | 40.0% | |
| ATTCTTGATACTGGTGCCTT+AGG | - | chr2_3:9446264-9446283 | Msa0277090:CDS | 40.0% | |
| !! | CTTCTTTGAAGCAGCTAACT+TGG | + | chr2_3:9446301-9446320 | None:intergenic | 40.0% |
| CAGCAATGTTGAGCACTCTT+AGG | + | chr2_3:9444544-9444563 | None:intergenic | 45.0% | |
| !! | CTAAGAGTGCTCAACATTGC+TGG | - | chr2_3:9444542-9444561 | Msa0277090:CDS | 45.0% |
| GGTCCCTTTGGCATGTTATT+TGG | + | chr2_3:9444788-9444807 | None:intergenic | 45.0% | |
| TTGAAGTCTTTGGGTCCCTT+TGG | + | chr2_3:9444800-9444819 | None:intergenic | 45.0% | |
| GGAACTTTCGTTAGGCGAAA+CGG | + | chr2_3:9444939-9444958 | None:intergenic | 45.0% | |
| TTCGCCTAACGAAAGTTCCA+AGG | - | chr2_3:9444940-9444959 | Msa0277090:intron | 45.0% | |
| TCGCCTAACGAAAGTTCCAA+GGG | - | chr2_3:9444941-9444960 | Msa0277090:intron | 45.0% | |
| TGTGGACATAGACTTTCCCT+TGG | + | chr2_3:9444960-9444979 | None:intergenic | 45.0% | |
| CGAATTGGTCCAGAGATAAC+TGG | + | chr2_3:9445128-9445147 | None:intergenic | 45.0% | |
| !!! | AAGAGCACCAACCGAAGTTT+TGG | - | chr2_3:9445404-9445423 | Msa0277090:intron | 45.0% |
| !! | AGAGCACCAACCGAAGTTTT+GGG | - | chr2_3:9445405-9445424 | Msa0277090:intron | 45.0% |
| CTTCTTCCCAAAACTTCGGT+TGG | + | chr2_3:9445414-9445433 | None:intergenic | 45.0% | |
| TAGTCACGGTACCTCTTACA+TGG | - | chr2_3:9445434-9445453 | Msa0277090:intron | 45.0% | |
| GTGATTGTCTGGTTGAGAGA+AGG | - | chr2_3:9445491-9445510 | Msa0277090:intron | 45.0% | |
| AAACGATCCACCACTGACAT+GGG | - | chr2_3:9446059-9446078 | Msa0277090:CDS | 45.0% | |
| CACCAACTTATGACTCAAGC+TGG | - | chr2_3:9446228-9446247 | Msa0277090:CDS | 45.0% | |
| ! | TCTGAGTTGAAGGAAGGCAT+TGG | + | chr2_3:9446324-9446343 | None:intergenic | 45.0% |
| CAGCAATGTTGAGCACTCTT+AGG | + | chr2_3:9444544-9444563 | None:intergenic | 45.0% | |
| !! | CTAAGAGTGCTCAACATTGC+TGG | - | chr2_3:9444542-9444561 | Msa0277090:CDS | 45.0% |
| GGTCCCTTTGGCATGTTATT+TGG | + | chr2_3:9444788-9444807 | None:intergenic | 45.0% | |
| TTGAAGTCTTTGGGTCCCTT+TGG | + | chr2_3:9444800-9444819 | None:intergenic | 45.0% | |
| GGAACTTTCGTTAGGCGAAA+CGG | + | chr2_3:9444939-9444958 | None:intergenic | 45.0% | |
| TTCGCCTAACGAAAGTTCCA+AGG | - | chr2_3:9444940-9444959 | Msa0277090:intron | 45.0% | |
| TCGCCTAACGAAAGTTCCAA+GGG | - | chr2_3:9444941-9444960 | Msa0277090:intron | 45.0% | |
| TGTGGACATAGACTTTCCCT+TGG | + | chr2_3:9444960-9444979 | None:intergenic | 45.0% | |
| CGAATTGGTCCAGAGATAAC+TGG | + | chr2_3:9445128-9445147 | None:intergenic | 45.0% | |
| !!! | AAGAGCACCAACCGAAGTTT+TGG | - | chr2_3:9445404-9445423 | Msa0277090:intron | 45.0% |
| !! | AGAGCACCAACCGAAGTTTT+GGG | - | chr2_3:9445405-9445424 | Msa0277090:intron | 45.0% |
| CTTCTTCCCAAAACTTCGGT+TGG | + | chr2_3:9445414-9445433 | None:intergenic | 45.0% | |
| TAGTCACGGTACCTCTTACA+TGG | - | chr2_3:9445434-9445453 | Msa0277090:intron | 45.0% | |
| GTGATTGTCTGGTTGAGAGA+AGG | - | chr2_3:9445491-9445510 | Msa0277090:intron | 45.0% | |
| AAACGATCCACCACTGACAT+GGG | - | chr2_3:9446059-9446078 | Msa0277090:CDS | 45.0% | |
| CACCAACTTATGACTCAAGC+TGG | - | chr2_3:9446228-9446247 | Msa0277090:CDS | 45.0% | |
| ! | TCTGAGTTGAAGGAAGGCAT+TGG | + | chr2_3:9446324-9446343 | None:intergenic | 45.0% |
| GTCATGTCAGCAATAGCGGT+TGG | + | chr2_3:9444710-9444729 | None:intergenic | 50.0% | |
| TTAGGCGAAACGGTTGATCC+AGG | + | chr2_3:9444929-9444948 | None:intergenic | 50.0% | |
| CGTCCTCAACCAGTTATCTC+TGG | - | chr2_3:9445116-9445135 | Msa0277090:intron | 50.0% | |
| GGTCCAGAGATAACTGGTTG+AGG | + | chr2_3:9445122-9445141 | None:intergenic | 50.0% | |
| TGGACCAATTCGTTCGACGA+AGG | - | chr2_3:9445136-9445155 | Msa0277090:intron | 50.0% | |
| GGACCAATTCGTTCGACGAA+GGG | - | chr2_3:9445137-9445156 | Msa0277090:intron | 50.0% | |
| GACCAATTCGTTCGACGAAG+GGG | - | chr2_3:9445138-9445157 | Msa0277090:intron | 50.0% | |
| ACCAATTCGTTCGACGAAGG+GGG | - | chr2_3:9445139-9445158 | Msa0277090:intron | 50.0% | |
| ! | GGCTTTGGTTGTATCAGCTG+AGG | - | chr2_3:9445161-9445180 | Msa0277090:intron | 50.0% |
| TGTATCAGCTGAGGATCTCG+TGG | - | chr2_3:9445170-9445189 | Msa0277090:intron | 50.0% | |
| AACTCGGGGACCATGAAAAG+TGG | + | chr2_3:9445281-9445300 | None:intergenic | 50.0% | |
| ! | CTTTTCATGGTCCCCGAGTT+TGG | - | chr2_3:9445281-9445300 | Msa0277090:intron | 50.0% |
| TGTCTGGTTGAGAGAAGGAG+TGG | - | chr2_3:9445496-9445515 | Msa0277090:intron | 50.0% | |
| GAGAAGGAGTGGCGAAACAA+AGG | - | chr2_3:9445507-9445526 | Msa0277090:intron | 50.0% | |
| GAAACGATCCACCACTGACA+TGG | - | chr2_3:9446058-9446077 | Msa0277090:CDS | 50.0% | |
| CTAGCAGTTGACGTAGCATG+TGG | - | chr2_3:9446096-9446115 | Msa0277090:CDS | 50.0% | |
| GGGGAACAACTCGGTCAAAA+TGG | + | chr2_3:9446134-9446153 | None:intergenic | 50.0% | |
| TTTGACCGAGTTGTTCCCCA+TGG | - | chr2_3:9446135-9446154 | Msa0277090:CDS | 50.0% | |
| GGTTTCCATGGGGAACAACT+CGG | + | chr2_3:9446143-9446162 | None:intergenic | 50.0% | |
| CTTGGGTGCGTGATAACCTA+AGG | + | chr2_3:9446283-9446302 | None:intergenic | 50.0% | |
| GTCATGTCAGCAATAGCGGT+TGG | + | chr2_3:9444710-9444729 | None:intergenic | 50.0% | |
| TTAGGCGAAACGGTTGATCC+AGG | + | chr2_3:9444929-9444948 | None:intergenic | 50.0% | |
| CGTCCTCAACCAGTTATCTC+TGG | - | chr2_3:9445116-9445135 | Msa0277090:intron | 50.0% | |
| GGTCCAGAGATAACTGGTTG+AGG | + | chr2_3:9445122-9445141 | None:intergenic | 50.0% | |
| TGGACCAATTCGTTCGACGA+AGG | - | chr2_3:9445136-9445155 | Msa0277090:intron | 50.0% | |
| GGACCAATTCGTTCGACGAA+GGG | - | chr2_3:9445137-9445156 | Msa0277090:intron | 50.0% | |
| GACCAATTCGTTCGACGAAG+GGG | - | chr2_3:9445138-9445157 | Msa0277090:intron | 50.0% | |
| ACCAATTCGTTCGACGAAGG+GGG | - | chr2_3:9445139-9445158 | Msa0277090:intron | 50.0% | |
| ! | GGCTTTGGTTGTATCAGCTG+AGG | - | chr2_3:9445161-9445180 | Msa0277090:intron | 50.0% |
| TGTATCAGCTGAGGATCTCG+TGG | - | chr2_3:9445170-9445189 | Msa0277090:intron | 50.0% | |
| AACTCGGGGACCATGAAAAG+TGG | + | chr2_3:9445281-9445300 | None:intergenic | 50.0% | |
| ! | CTTTTCATGGTCCCCGAGTT+TGG | - | chr2_3:9445281-9445300 | Msa0277090:intron | 50.0% |
| TGTCTGGTTGAGAGAAGGAG+TGG | - | chr2_3:9445496-9445515 | Msa0277090:intron | 50.0% | |
| GAGAAGGAGTGGCGAAACAA+AGG | - | chr2_3:9445507-9445526 | Msa0277090:intron | 50.0% | |
| GAAACGATCCACCACTGACA+TGG | - | chr2_3:9446058-9446077 | Msa0277090:CDS | 50.0% | |
| CTAGCAGTTGACGTAGCATG+TGG | - | chr2_3:9446096-9446115 | Msa0277090:CDS | 50.0% | |
| GGGGAACAACTCGGTCAAAA+TGG | + | chr2_3:9446134-9446153 | None:intergenic | 50.0% | |
| TTTGACCGAGTTGTTCCCCA+TGG | - | chr2_3:9446135-9446154 | Msa0277090:CDS | 50.0% | |
| GGTTTCCATGGGGAACAACT+CGG | + | chr2_3:9446143-9446162 | None:intergenic | 50.0% | |
| CTTGGGTGCGTGATAACCTA+AGG | + | chr2_3:9446283-9446302 | None:intergenic | 50.0% | |
| CCAATTCGTTCGACGAAGGG+GGG | - | chr2_3:9445140-9445159 | Msa0277090:intron | 55.0% | |
| GATCTCGTGGCTTCACGCAA+AGG | - | chr2_3:9445183-9445202 | Msa0277090:intron | 55.0% | |
| CCAATTCGTTCGACGAAGGG+GGG | - | chr2_3:9445140-9445159 | Msa0277090:intron | 55.0% | |
| GATCTCGTGGCTTCACGCAA+AGG | - | chr2_3:9445183-9445202 | Msa0277090:intron | 55.0% | |
| CCCCCCTTCGTCGAACGAAT+TGG | + | chr2_3:9445143-9445162 | None:intergenic | 60.0% | |
| CTCTACGCCCATGTCAGTGG+TGG | + | chr2_3:9446069-9446088 | None:intergenic | 60.0% | |
| CACCACTGACATGGGCGTAG+AGG | - | chr2_3:9446067-9446086 | Msa0277090:CDS | 60.0% | |
| AGCCTCTACGCCCATGTCAG+TGG | + | chr2_3:9446072-9446091 | None:intergenic | 60.0% | |
| CCCCCCTTCGTCGAACGAAT+TGG | + | chr2_3:9445143-9445162 | None:intergenic | 60.0% | |
| CTCTACGCCCATGTCAGTGG+TGG | + | chr2_3:9446069-9446088 | None:intergenic | 60.0% | |
| CACCACTGACATGGGCGTAG+AGG | - | chr2_3:9446067-9446086 | Msa0277090:CDS | 60.0% | |
| AGCCTCTACGCCCATGTCAG+TGG | + | chr2_3:9446072-9446091 | None:intergenic | 60.0% | |
| CGTTCGACGAAGGGGGGCTT+TGG | - | chr2_3:9445146-9445165 | Msa0277090:intron | 65.0% | |
| CGTTCGACGAAGGGGGGCTT+TGG | - | chr2_3:9445146-9445165 | Msa0277090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 9444446 | 9446368 | 9444446 | ID=Msa0277090;Name=Msa0277090 |
| chr2_3 | mRNA | 9444446 | 9446368 | 9444446 | ID=Msa0277090-mRNA-1;Parent=Msa0277090;Name=Msa0277090-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0|0.5|2|0|271 |
| chr2_3 | exon | 9445835 | 9446368 | 9445835 | ID=Msa0277090-mRNA-1:exon:4320;Parent=Msa0277090-mRNA-1 |
| chr2_3 | exon | 9444446 | 9444727 | 9444446 | ID=Msa0277090-mRNA-1:exon:4319;Parent=Msa0277090-mRNA-1 |
| chr2_3 | CDS | 9445835 | 9446368 | 9445835 | ID=Msa0277090-mRNA-1:cds;Parent=Msa0277090-mRNA-1 |
| chr2_3 | CDS | 9444446 | 9444727 | 9444446 | ID=Msa0277090-mRNA-1:cds;Parent=Msa0277090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
