Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277540 | XP_003593962.1 | 83.422 | 374 | 53 | 2 | 1 | 373 | 1 | 366 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277540 | G7IPZ5 | 83.422 | 374 | 53 | 2 | 1 | 373 | 1 | 366 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0277540 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277540 | MtrunA17_Chr2g0286191 | 83.422 | 374 | 53 | 2 | 1 | 373 | 1 | 366 | 0.0 | 613 |
| Msa0277540 | MtrunA17_Chr2g0295761 | 48.406 | 345 | 163 | 5 | 30 | 366 | 52 | 389 | 1.10e-103 | 311 |
| Msa0277540 | MtrunA17_Chr2g0295731 | 46.018 | 339 | 177 | 4 | 32 | 366 | 41 | 377 | 3.37e-99 | 299 |
| Msa0277540 | MtrunA17_Chr4g0067121 | 46.588 | 337 | 175 | 4 | 33 | 366 | 46 | 380 | 1.79e-97 | 295 |
| Msa0277540 | MtrunA17_Chr2g0295741 | 45.706 | 361 | 184 | 6 | 12 | 366 | 22 | 376 | 1.24e-96 | 293 |
| Msa0277540 | MtrunA17_Chr2g0296151 | 44.474 | 371 | 199 | 5 | 1 | 366 | 2 | 370 | 1.44e-94 | 287 |
| Msa0277540 | MtrunA17_Chr2g0296121 | 45.028 | 362 | 193 | 4 | 9 | 366 | 97 | 456 | 7.56e-94 | 288 |
| Msa0277540 | MtrunA17_Chr2g0296111 | 45.699 | 372 | 180 | 7 | 6 | 366 | 10 | 370 | 1.25e-90 | 277 |
| Msa0277540 | MtrunA17_Chr2g0296301 | 42.450 | 351 | 199 | 3 | 18 | 365 | 15 | 365 | 1.93e-89 | 275 |
| Msa0277540 | MtrunA17_Chr2g0286221 | 76.074 | 163 | 39 | 0 | 208 | 370 | 11 | 173 | 2.10e-86 | 259 |
| Msa0277540 | MtrunA17_Chr2g0296711 | 41.954 | 348 | 183 | 7 | 38 | 373 | 53 | 393 | 1.17e-81 | 256 |
| Msa0277540 | MtrunA17_Chr2g0296291 | 39.572 | 374 | 184 | 6 | 33 | 366 | 27 | 398 | 1.46e-78 | 247 |
| Msa0277540 | MtrunA17_Chr4g0067671 | 41.573 | 356 | 186 | 8 | 7 | 349 | 9 | 355 | 3.29e-77 | 242 |
| Msa0277540 | MtrunA17_Chr2g0296251 | 38.791 | 397 | 189 | 7 | 16 | 366 | 10 | 398 | 1.35e-76 | 241 |
| Msa0277540 | MtrunA17_Chr2g0296191 | 40.710 | 366 | 200 | 5 | 7 | 365 | 154 | 509 | 1.70e-76 | 255 |
| Msa0277540 | MtrunA17_Chr2g0296191 | 40.401 | 349 | 187 | 8 | 29 | 363 | 653 | 994 | 1.42e-66 | 227 |
| Msa0277540 | MtrunA17_Chr4g0067141 | 39.459 | 370 | 209 | 5 | 8 | 370 | 14 | 375 | 3.62e-76 | 240 |
| Msa0277540 | MtrunA17_Chr2g0296741 | 39.782 | 367 | 192 | 9 | 14 | 366 | 52 | 403 | 2.23e-74 | 236 |
| Msa0277540 | MtrunA17_Chr2g0315731 | 40.055 | 362 | 198 | 8 | 14 | 366 | 52 | 403 | 4.53e-74 | 236 |
| Msa0277540 | MtrunA17_Chr2g0296221 | 40.431 | 371 | 197 | 9 | 13 | 366 | 51 | 414 | 3.48e-73 | 234 |
| Msa0277540 | MtrunA17_Chr2g0296721 | 39.554 | 359 | 203 | 6 | 14 | 366 | 32 | 382 | 3.02e-72 | 230 |
| Msa0277540 | MtrunA17_Chr2g0296231 | 40.870 | 345 | 183 | 8 | 34 | 366 | 45 | 380 | 4.28e-72 | 230 |
| Msa0277540 | MtrunA17_Chr2g0296171 | 40.580 | 345 | 184 | 8 | 38 | 368 | 60 | 397 | 1.74e-70 | 226 |
| Msa0277540 | MtrunA17_Chr4g0001831 | 36.648 | 352 | 216 | 4 | 22 | 367 | 21 | 371 | 4.98e-67 | 216 |
| Msa0277540 | MtrunA17_Chr2g0296181 | 38.416 | 341 | 176 | 6 | 32 | 366 | 45 | 357 | 2.31e-63 | 207 |
| Msa0277540 | MtrunA17_Chr2g0296131 | 48.366 | 153 | 77 | 2 | 215 | 365 | 9 | 161 | 2.13e-42 | 146 |
| Msa0277540 | MtrunA17_Chr2g0296551 | 44.505 | 182 | 97 | 3 | 187 | 366 | 5 | 184 | 3.92e-42 | 146 |
| Msa0277540 | MtrunA17_Chr2g0296161 | 50.000 | 156 | 76 | 2 | 213 | 366 | 3 | 158 | 4.66e-42 | 145 |
| Msa0277540 | MtrunA17_Chr2g0296211 | 34.708 | 291 | 159 | 8 | 98 | 366 | 77 | 358 | 1.11e-40 | 147 |
| Msa0277540 | MtrunA17_Chr2g0296211 | 37.190 | 121 | 67 | 3 | 5 | 122 | 90 | 204 | 5.32e-11 | 63.5 |
| Msa0277540 | MtrunA17_Chr2g0296701 | 48.684 | 152 | 76 | 2 | 217 | 366 | 5 | 156 | 7.69e-39 | 136 |
| Msa0277540 | MtrunA17_Chr2g0295711 | 44.872 | 156 | 84 | 1 | 32 | 185 | 40 | 195 | 4.64e-37 | 133 |
| Msa0277540 | MtrunA17_Chr8g0377781 | 30.655 | 336 | 225 | 6 | 31 | 360 | 35 | 368 | 1.24e-36 | 136 |
| Msa0277540 | MtrunA17_Chr2g0295751 | 47.742 | 155 | 75 | 3 | 12 | 164 | 25 | 175 | 3.90e-35 | 134 |
| Msa0277540 | MtrunA17_Chr8g0377801 | 28.529 | 340 | 235 | 6 | 31 | 364 | 48 | 385 | 1.31e-34 | 131 |
| Msa0277540 | MtrunA17_Chr2g0296751 | 50.394 | 127 | 62 | 1 | 241 | 366 | 3 | 129 | 1.74e-33 | 122 |
| Msa0277540 | MtrunA17_Chr2g0295721 | 51.754 | 114 | 54 | 1 | 213 | 325 | 3 | 116 | 3.59e-32 | 117 |
| Msa0277540 | MtrunA17_Chr2g0296561 | 42.029 | 138 | 74 | 2 | 7 | 140 | 3 | 138 | 2.17e-24 | 97.8 |
| Msa0277540 | MtrunA17_Chr4g0067131 | 46.914 | 81 | 42 | 1 | 283 | 362 | 1 | 81 | 4.55e-17 | 75.5 |
| Msa0277540 | MtrunA17_Chr8g0339041 | 20.833 | 360 | 252 | 12 | 28 | 367 | 5 | 351 | 1.22e-12 | 68.6 |
| Msa0277540 | MtrunA17_Chr4g0067681 | 50.000 | 58 | 29 | 0 | 272 | 329 | 1 | 58 | 3.33e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277540 | AT5G07900.1 | 38.024 | 334 | 201 | 4 | 36 | 363 | 66 | 399 | 3.10e-75 | 239 |
| Msa0277540 | AT1G21150.1 | 34.821 | 336 | 213 | 3 | 38 | 367 | 55 | 390 | 1.27e-59 | 197 |
| Msa0277540 | AT1G21150.2 | 34.821 | 336 | 213 | 3 | 38 | 367 | 119 | 454 | 8.71e-59 | 197 |
| Msa0277540 | AT1G21150.3 | 34.030 | 335 | 215 | 3 | 39 | 367 | 20 | 354 | 8.39e-58 | 192 |
| Msa0277540 | AT1G61980.3 | 29.178 | 377 | 208 | 11 | 36 | 363 | 49 | 415 | 1.04e-41 | 151 |
| Msa0277540 | AT1G61980.2 | 29.178 | 377 | 208 | 11 | 36 | 363 | 49 | 415 | 1.04e-41 | 151 |
| Msa0277540 | AT1G61980.1 | 29.178 | 377 | 208 | 11 | 36 | 363 | 49 | 415 | 1.04e-41 | 151 |
| Msa0277540 | AT1G62120.1 | 27.604 | 384 | 227 | 11 | 30 | 367 | 47 | 425 | 3.03e-40 | 147 |
| Msa0277540 | AT1G61970.2 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61970.7 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61970.6 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61970.3 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61970.5 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61970.4 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61970.1 | 27.513 | 378 | 213 | 10 | 36 | 363 | 49 | 415 | 1.12e-38 | 143 |
| Msa0277540 | AT1G61990.2 | 28.455 | 369 | 214 | 10 | 36 | 363 | 49 | 408 | 1.11e-37 | 140 |
| Msa0277540 | AT1G61990.1 | 28.455 | 369 | 214 | 10 | 36 | 363 | 49 | 408 | 1.11e-37 | 140 |
| Msa0277540 | AT1G62110.1 | 28.074 | 431 | 209 | 14 | 30 | 370 | 43 | 462 | 4.04e-36 | 137 |
| Msa0277540 | AT1G62085.1 | 27.751 | 418 | 220 | 12 | 29 | 367 | 45 | 459 | 1.76e-35 | 135 |
| Msa0277540 | AT1G62085.2 | 27.751 | 418 | 220 | 12 | 29 | 367 | 45 | 459 | 1.76e-35 | 135 |
| Msa0277540 | AT1G61960.1 | 27.494 | 411 | 211 | 13 | 34 | 363 | 47 | 451 | 3.18e-35 | 134 |
| Msa0277540 | AT5G23930.1 | 28.463 | 397 | 204 | 9 | 36 | 359 | 52 | 441 | 4.62e-35 | 134 |
| Msa0277540 | AT1G62010.1 | 27.794 | 349 | 197 | 9 | 65 | 367 | 64 | 403 | 1.08e-34 | 132 |
| Msa0277540 | AT3G46950.1 | 32.411 | 253 | 161 | 5 | 30 | 279 | 43 | 288 | 3.89e-34 | 131 |
| Msa0277540 | AT1G62150.1 | 25.845 | 414 | 224 | 11 | 33 | 367 | 52 | 461 | 3.20e-33 | 129 |
| Msa0277540 | AT5G64950.1 | 27.424 | 361 | 241 | 9 | 20 | 364 | 21 | 376 | 1.09e-27 | 112 |
| Msa0277540 | AT1G56380.1 | 25.668 | 374 | 222 | 12 | 40 | 363 | 17 | 384 | 1.11e-23 | 101 |
| Msa0277540 | AT1G56380.2 | 25.668 | 374 | 222 | 12 | 40 | 363 | 28 | 395 | 1.54e-23 | 101 |
| Msa0277540 | AT1G79220.1 | 25.000 | 300 | 182 | 6 | 75 | 368 | 119 | 381 | 1.18e-14 | 75.1 |
Find 55 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCCCATACGGATTT+TGG | 0.131006 | 2_3:-10127966 | None:intergenic |
| CATAAGAAGTATTGGATATT+TGG | 0.165459 | 2_3:-10128141 | None:intergenic |
| GAAAGAAGGAAATTGAATTT+AGG | 0.170730 | 2_3:-10127573 | None:intergenic |
| AGACAACATTAGAGGATTTC+TGG | 0.170792 | 2_3:-10127634 | None:intergenic |
| TGACTGTAAAAGAGTGATTT+TGG | 0.173839 | 2_3:-10127353 | None:intergenic |
| ATTCAATTTCCTTCTTTCTA+AGG | 0.183402 | 2_3:+10127578 | Msa0277540:CDS |
| AAAGAAGGAAATTGAATTTA+GGG | 0.185509 | 2_3:-10127572 | None:intergenic |
| GATGCTTCAACTTTCAAATA+AGG | 0.222209 | 2_3:+10128350 | Msa0277540:CDS |
| ATTCAATCCCTGCTTCAAAA+TGG | 0.240883 | 2_3:+10127786 | Msa0277540:CDS |
| GAGAGTTTAGAAGCAGTTTC+TGG | 0.245687 | 2_3:-10127405 | None:intergenic |
| AATACTTCTTATGCTGAGTT+TGG | 0.261332 | 2_3:+10128151 | Msa0277540:CDS |
| TCAATCCAAAGGTTTGATTA+AGG | 0.262442 | 2_3:+10128214 | Msa0277540:CDS |
| GAGATGGGAATTTAGAATAA+AGG | 0.311834 | 2_3:-10127758 | None:intergenic |
| TTCAATCCCTGCTTCAAAAT+GGG | 0.343027 | 2_3:+10127787 | Msa0277540:CDS |
| AAGCTTTGAGACAACATTAG+AGG | 0.354334 | 2_3:-10127642 | None:intergenic |
| AATAAGGCGATGACTGAATC+AGG | 0.360376 | 2_3:-10127459 | None:intergenic |
| GAAACCATATGATTTGAATA+AGG | 0.365532 | 2_3:-10127475 | None:intergenic |
| AGTATTTGAGAAGGCAGTTT+TGG | 0.367653 | 2_3:+10127875 | Msa0277540:CDS |
| GATTAATGCGTATAAGAAAT+GGG | 0.369032 | 2_3:+10127989 | Msa0277540:CDS |
| ATCGCCTTATTCAAATCATA+TGG | 0.377167 | 2_3:+10127471 | Msa0277540:CDS |
| TTTGATGAGAGATGATAATT+GGG | 0.380318 | 2_3:-10127505 | None:intergenic |
| AGATTAATGCGTATAAGAAA+TGG | 0.381339 | 2_3:+10127988 | Msa0277540:CDS |
| GAAATTGAATTTAGGGAGAA+TGG | 0.403378 | 2_3:-10127565 | None:intergenic |
| TTCAATTTCCTTCTTTCTAA+GGG | 0.407285 | 2_3:+10127579 | Msa0277540:CDS |
| AGCATCCTTAATCAAACCTT+TGG | 0.408692 | 2_3:-10128219 | None:intergenic |
| AACTACCTCATTCAAAATTG+TGG | 0.437653 | 2_3:+10127375 | Msa0277540:CDS |
| AAGAAGATGAAGAGTTATTG+AGG | 0.449182 | 2_3:-10127304 | None:intergenic |
| TTGAAGCACCCTTAGAAAGA+AGG | 0.450723 | 2_3:-10127587 | None:intergenic |
| AAACTCAGCATAAGAAGTAT+TGG | 0.453268 | 2_3:-10128149 | None:intergenic |
| ACTACCTCATTCAAAATTGT+GGG | 0.457092 | 2_3:+10127376 | Msa0277540:CDS |
| TCTTAGCATGCAGCGCGATA+AGG | 0.457183 | 2_3:-10127938 | None:intergenic |
| TCTAATGTTGTCTCAAAGCT+TGG | 0.460382 | 2_3:+10127644 | Msa0277540:CDS |
| TTGAAATTTCTTCAATCCAA+AGG | 0.481678 | 2_3:+10128203 | Msa0277540:CDS |
| CAGAGACTTTGAAAGGTGTA+GGG | 0.502615 | 2_3:-10128247 | None:intergenic |
| ATTAATCTTCCTTTCCCATA+CGG | 0.515016 | 2_3:-10127973 | None:intergenic |
| GTCCAAAATCCGTATGGGAA+AGG | 0.543559 | 2_3:+10127964 | Msa0277540:CDS |
| ACTGCCTTCTCAAATACTGC+AGG | 0.547454 | 2_3:-10127870 | None:intergenic |
| AGATTAGTCCAAAATCCGTA+TGG | 0.549136 | 2_3:+10127958 | Msa0277540:CDS |
| TCAATCCCTGCTTCAAAATG+GGG | 0.550397 | 2_3:+10127788 | Msa0277540:CDS |
| GAAGTATCCATGGTGTATGT+TGG | 0.562557 | 2_3:+10128046 | Msa0277540:CDS |
| ATGGTGTATGTTGGCATCTG+TGG | 0.563796 | 2_3:+10128055 | Msa0277540:CDS |
| TCAGAGACTTTGAAAGGTGT+AGG | 0.564549 | 2_3:-10128248 | None:intergenic |
| GCAATGTTTGAGAGCTGCAA+TGG | 0.572268 | 2_3:-10127727 | None:intergenic |
| ATCTCTCATCAAAACTCGCA+CGG | 0.575191 | 2_3:+10127515 | Msa0277540:CDS |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | 2_3:-10127679 | None:intergenic |
| AATTTCAACGCAAAAGCCCT+AGG | 0.586081 | 2_3:-10128188 | None:intergenic |
| GATTAGTCCAAAATCCGTAT+GGG | 0.594092 | 2_3:+10127959 | Msa0277540:CDS |
| ATTAATGCGTATAAGAAATG+GGG | 0.599170 | 2_3:+10127990 | Msa0277540:CDS |
| GAAACCTGCAGTATTTGAGA+AGG | 0.606941 | 2_3:+10127866 | Msa0277540:CDS |
| AGATCCTCAGAGACTTTGAA+AGG | 0.621290 | 2_3:-10128254 | None:intergenic |
| ATGCGTATAAGAAATGGGGT+TGG | 0.624037 | 2_3:+10127994 | Msa0277540:CDS |
| AGAGACTTTGAAAGGTGTAG+GGG | 0.645255 | 2_3:-10128246 | None:intergenic |
| TACACCTTTCAAAGTCTCTG+AGG | 0.664130 | 2_3:+10128250 | Msa0277540:CDS |
| ACAGATGCCAACATACACCA+TGG | 0.670800 | 2_3:-10128053 | None:intergenic |
| GAGATATGTGAATTGCTACG+AGG | 0.748097 | 2_3:+10128286 | Msa0277540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAAAATGATAACAA+GGG | - | chr2_3:10127683-10127702 | None:intergenic | 15.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | - | chr2_3:10127683-10127702 | None:intergenic | 15.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | chr2_3:10127575-10127594 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | chr2_3:10127682-10127701 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | chr2_3:10127684-10127703 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | chr2_3:10127816-10127835 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | chr2_3:10127823-10127842 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | chr2_3:10127826-10127845 | Msa0277540:CDS | 20.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | chr2_3:10127575-10127594 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | chr2_3:10127682-10127701 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | chr2_3:10127684-10127703 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | chr2_3:10127816-10127835 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | chr2_3:10127823-10127842 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | chr2_3:10127826-10127845 | Msa0277540:CDS | 20.0% |
| ! | GAAACCATATGATTTGAATA+AGG | - | chr2_3:10127478-10127497 | None:intergenic | 25.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | chr2_3:10127508-10127527 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | chr2_3:10127509-10127528 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | chr2_3:10127576-10127595 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | chr2_3:10127578-10127597 | Msa0277540:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | chr2_3:10127579-10127598 | Msa0277540:CDS | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | chr2_3:10127891-10127910 | Msa0277540:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | chr2_3:10127924-10127943 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | chr2_3:10127988-10128007 | Msa0277540:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | chr2_3:10127989-10128008 | Msa0277540:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | chr2_3:10127990-10128009 | Msa0277540:CDS | 25.0% |
| !!! | CATAAGAAGTATTGGATATT+TGG | - | chr2_3:10128144-10128163 | None:intergenic | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | chr2_3:10128203-10128222 | Msa0277540:CDS | 25.0% |
| ! | GAAACCATATGATTTGAATA+AGG | - | chr2_3:10127478-10127497 | None:intergenic | 25.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | chr2_3:10127508-10127527 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | chr2_3:10127509-10127528 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | chr2_3:10127576-10127595 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | chr2_3:10127578-10127597 | Msa0277540:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | chr2_3:10127579-10127598 | Msa0277540:CDS | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | chr2_3:10127891-10127910 | Msa0277540:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | chr2_3:10127924-10127943 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | chr2_3:10127988-10128007 | Msa0277540:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | chr2_3:10127989-10128008 | Msa0277540:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | chr2_3:10127990-10128009 | Msa0277540:CDS | 25.0% |
| !!! | CATAAGAAGTATTGGATATT+TGG | - | chr2_3:10128144-10128163 | None:intergenic | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | chr2_3:10128203-10128222 | Msa0277540:CDS | 25.0% |
| !!! | TATTGAGGTTTTGAATGAGA+GGG | - | chr2_3:10127292-10127311 | None:intergenic | 30.0% |
| !!! | TTATTGAGGTTTTGAATGAG+AGG | - | chr2_3:10127293-10127312 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | chr2_3:10127307-10127326 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | chr2_3:10127355-10127374 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | chr2_3:10127356-10127375 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | chr2_3:10127375-10127394 | Msa0277540:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | chr2_3:10127376-10127395 | Msa0277540:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | chr2_3:10127383-10127402 | None:intergenic | 30.0% |
| ! | ATCGCCTTATTCAAATCATA+TGG | + | chr2_3:10127471-10127490 | Msa0277540:CDS | 30.0% |
| GAAATTGAATTTAGGGAGAA+TGG | - | chr2_3:10127568-10127587 | None:intergenic | 30.0% | |
| ! | GAGATGGGAATTTAGAATAA+AGG | - | chr2_3:10127761-10127780 | None:intergenic | 30.0% |
| !!! | GGGATTGAATATTTTGAGAT+GGG | - | chr2_3:10127776-10127795 | None:intergenic | 30.0% |
| !! | AGGGATTGAATATTTTGAGA+TGG | - | chr2_3:10127777-10127796 | None:intergenic | 30.0% |
| ATTAATCTTCCTTTCCCATA+CGG | - | chr2_3:10127976-10127995 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | chr2_3:10128098-10128117 | Msa0277540:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | chr2_3:10128152-10128171 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | chr2_3:10128151-10128170 | Msa0277540:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | chr2_3:10128159-10128178 | Msa0277540:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | chr2_3:10128160-10128179 | Msa0277540:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | chr2_3:10128214-10128233 | Msa0277540:CDS | 30.0% | |
| !!! | TATTGAGGTTTTGAATGAGA+GGG | - | chr2_3:10127292-10127311 | None:intergenic | 30.0% |
| !!! | TTATTGAGGTTTTGAATGAG+AGG | - | chr2_3:10127293-10127312 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | chr2_3:10127307-10127326 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | chr2_3:10127355-10127374 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | chr2_3:10127356-10127375 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | chr2_3:10127375-10127394 | Msa0277540:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | chr2_3:10127376-10127395 | Msa0277540:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | chr2_3:10127383-10127402 | None:intergenic | 30.0% |
| ! | ATCGCCTTATTCAAATCATA+TGG | + | chr2_3:10127471-10127490 | Msa0277540:CDS | 30.0% |
| GAAATTGAATTTAGGGAGAA+TGG | - | chr2_3:10127568-10127587 | None:intergenic | 30.0% | |
| ! | GAGATGGGAATTTAGAATAA+AGG | - | chr2_3:10127761-10127780 | None:intergenic | 30.0% |
| !!! | GGGATTGAATATTTTGAGAT+GGG | - | chr2_3:10127776-10127795 | None:intergenic | 30.0% |
| !! | AGGGATTGAATATTTTGAGA+TGG | - | chr2_3:10127777-10127796 | None:intergenic | 30.0% |
| ATTAATCTTCCTTTCCCATA+CGG | - | chr2_3:10127976-10127995 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | chr2_3:10128098-10128117 | Msa0277540:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | chr2_3:10128152-10128171 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | chr2_3:10128151-10128170 | Msa0277540:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | chr2_3:10128159-10128178 | Msa0277540:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | chr2_3:10128160-10128179 | Msa0277540:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | chr2_3:10128214-10128233 | Msa0277540:CDS | 30.0% | |
| !!! | ATTGAGGTTTTGAATGAGAG+GGG | - | chr2_3:10127291-10127310 | None:intergenic | 35.0% |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | chr2_3:10127558-10127577 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | chr2_3:10127559-10127578 | None:intergenic | 35.0% |
| AGACAACATTAGAGGATTTC+TGG | - | chr2_3:10127637-10127656 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATTAG+AGG | - | chr2_3:10127645-10127664 | None:intergenic | 35.0% |
| TCTAATGTTGTCTCAAAGCT+TGG | + | chr2_3:10127644-10127663 | Msa0277540:CDS | 35.0% | |
| ATTCAATCCCTGCTTCAAAA+TGG | + | chr2_3:10127786-10127805 | Msa0277540:CDS | 35.0% | |
| TTCAATCCCTGCTTCAAAAT+GGG | + | chr2_3:10127787-10127806 | Msa0277540:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | chr2_3:10127875-10127894 | Msa0277540:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | chr2_3:10127958-10127977 | Msa0277540:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | chr2_3:10127959-10127978 | Msa0277540:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | chr2_3:10128036-10128055 | Msa0277540:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | chr2_3:10128097-10128116 | Msa0277540:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | chr2_3:10128102-10128121 | Msa0277540:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | chr2_3:10128103-10128122 | Msa0277540:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | chr2_3:10128171-10128190 | Msa0277540:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | chr2_3:10128172-10128191 | Msa0277540:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | chr2_3:10128222-10128241 | None:intergenic | 35.0% | |
| !!! | ATTGAGGTTTTGAATGAGAG+GGG | - | chr2_3:10127291-10127310 | None:intergenic | 35.0% |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | chr2_3:10127558-10127577 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | chr2_3:10127559-10127578 | None:intergenic | 35.0% |
| AGACAACATTAGAGGATTTC+TGG | - | chr2_3:10127637-10127656 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATTAG+AGG | - | chr2_3:10127645-10127664 | None:intergenic | 35.0% |
| TCTAATGTTGTCTCAAAGCT+TGG | + | chr2_3:10127644-10127663 | Msa0277540:CDS | 35.0% | |
| ATTCAATCCCTGCTTCAAAA+TGG | + | chr2_3:10127786-10127805 | Msa0277540:CDS | 35.0% | |
| TTCAATCCCTGCTTCAAAAT+GGG | + | chr2_3:10127787-10127806 | Msa0277540:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | chr2_3:10127875-10127894 | Msa0277540:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | chr2_3:10127958-10127977 | Msa0277540:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | chr2_3:10127959-10127978 | Msa0277540:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | chr2_3:10128036-10128055 | Msa0277540:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | chr2_3:10128097-10128116 | Msa0277540:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | chr2_3:10128102-10128121 | Msa0277540:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | chr2_3:10128103-10128122 | Msa0277540:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | chr2_3:10128171-10128190 | Msa0277540:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | chr2_3:10128172-10128191 | Msa0277540:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | chr2_3:10128222-10128241 | None:intergenic | 35.0% | |
| ! | TTTTGAATGAGAGGGGGTTA+GGG | - | chr2_3:10127284-10127303 | None:intergenic | 40.0% |
| !!! | TTGAGGTTTTGAATGAGAGG+GGG | - | chr2_3:10127290-10127309 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | chr2_3:10127408-10127427 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | chr2_3:10127462-10127481 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | chr2_3:10127515-10127534 | Msa0277540:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | chr2_3:10127590-10127609 | None:intergenic | 40.0% |
| TCAATCCCTGCTTCAAAATG+GGG | + | chr2_3:10127788-10127807 | Msa0277540:CDS | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | chr2_3:10127866-10127885 | Msa0277540:CDS | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | chr2_3:10127969-10127988 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | chr2_3:10127994-10128013 | Msa0277540:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | chr2_3:10128046-10128065 | Msa0277540:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | chr2_3:10128191-10128210 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | chr2_3:10128249-10128268 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | chr2_3:10128250-10128269 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | chr2_3:10128251-10128270 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | chr2_3:10128250-10128269 | Msa0277540:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | chr2_3:10128257-10128276 | None:intergenic | 40.0% | |
| GAGATATGTGAATTGCTACG+AGG | + | chr2_3:10128286-10128305 | Msa0277540:CDS | 40.0% | |
| ! | TTTTGAATGAGAGGGGGTTA+GGG | - | chr2_3:10127284-10127303 | None:intergenic | 40.0% |
| !!! | TTGAGGTTTTGAATGAGAGG+GGG | - | chr2_3:10127290-10127309 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | chr2_3:10127408-10127427 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | chr2_3:10127462-10127481 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | chr2_3:10127515-10127534 | Msa0277540:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | chr2_3:10127590-10127609 | None:intergenic | 40.0% |
| TCAATCCCTGCTTCAAAATG+GGG | + | chr2_3:10127788-10127807 | Msa0277540:CDS | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | chr2_3:10127866-10127885 | Msa0277540:CDS | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | chr2_3:10127969-10127988 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | chr2_3:10127994-10128013 | Msa0277540:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | chr2_3:10128046-10128065 | Msa0277540:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | chr2_3:10128191-10128210 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | chr2_3:10128249-10128268 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | chr2_3:10128250-10128269 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | chr2_3:10128251-10128270 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | chr2_3:10128250-10128269 | Msa0277540:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | chr2_3:10128257-10128276 | None:intergenic | 40.0% | |
| GAGATATGTGAATTGCTACG+AGG | + | chr2_3:10128286-10128305 | Msa0277540:CDS | 40.0% | |
| !! | GTTTTGAATGAGAGGGGGTT+AGG | - | chr2_3:10127285-10127304 | None:intergenic | 45.0% |
| GCAATGTTTGAGAGCTGCAA+TGG | - | chr2_3:10127730-10127749 | None:intergenic | 45.0% | |
| !!! | AGGAACCCCATTTTGAAGCA+GGG | - | chr2_3:10127796-10127815 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | chr2_3:10127873-10127892 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | chr2_3:10127964-10127983 | Msa0277540:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | chr2_3:10128056-10128075 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | chr2_3:10128055-10128074 | Msa0277540:CDS | 45.0% | |
| !! | GTTTTGAATGAGAGGGGGTT+AGG | - | chr2_3:10127285-10127304 | None:intergenic | 45.0% |
| GCAATGTTTGAGAGCTGCAA+TGG | - | chr2_3:10127730-10127749 | None:intergenic | 45.0% | |
| !!! | AGGAACCCCATTTTGAAGCA+GGG | - | chr2_3:10127796-10127815 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | chr2_3:10127873-10127892 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | chr2_3:10127964-10127983 | Msa0277540:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | chr2_3:10128056-10128075 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | chr2_3:10128055-10128074 | Msa0277540:CDS | 45.0% | |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | chr2_3:10127797-10127816 | None:intergenic | 50.0% |
| TCTTAGCATGCAGCGCGATA+AGG | - | chr2_3:10127941-10127960 | None:intergenic | 50.0% | |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | chr2_3:10127797-10127816 | None:intergenic | 50.0% |
| TCTTAGCATGCAGCGCGATA+AGG | - | chr2_3:10127941-10127960 | None:intergenic | 50.0% | |
| AGGGGGTTAGGGCAGAGTAA+TGG | - | chr2_3:10127273-10127292 | None:intergenic | 55.0% | |
| AGGGGGTTAGGGCAGAGTAA+TGG | - | chr2_3:10127273-10127292 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 10127249 | 10128370 | 10127249 | ID=Msa0277540;Name=Msa0277540 |
| chr2_3 | mRNA | 10127249 | 10128370 | 10127249 | ID=Msa0277540-mRNA-1;Parent=Msa0277540;Name=Msa0277540-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|373 |
| chr2_3 | exon | 10127249 | 10128370 | 10127249 | ID=Msa0277540-mRNA-1:exon:4506;Parent=Msa0277540-mRNA-1 |
| chr2_3 | CDS | 10127249 | 10128370 | 10127249 | ID=Msa0277540-mRNA-1:cds;Parent=Msa0277540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
