Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277660 | XP_003627159.1 | 77.249 | 189 | 8 | 1 | 1 | 154 | 1 | 189 | 4.26e-93 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277660 | sp|Q9CAI5|CKL2_ARATH | 70.370 | 189 | 21 | 1 | 1 | 154 | 1 | 189 | 3.40e-89 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277660 | G7LI85 | 77.249 | 189 | 8 | 1 | 1 | 154 | 1 | 189 | 2.03e-93 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277660 | MtrunA17_Chr8g0342821 | 77.249 | 189 | 8 | 1 | 1 | 154 | 1 | 189 | 3.91e-97 | 292 |
| Msa0277660 | MtrunA17_Chr4g0071031 | 71.053 | 190 | 19 | 2 | 1 | 154 | 1 | 190 | 8.54e-90 | 272 |
| Msa0277660 | MtrunA17_Chr2g0329981 | 71.053 | 190 | 19 | 2 | 1 | 154 | 1 | 190 | 4.82e-89 | 271 |
| Msa0277660 | MtrunA17_Chr2g0299661 | 66.842 | 190 | 27 | 2 | 1 | 154 | 1 | 190 | 9.88e-83 | 255 |
| Msa0277660 | MtrunA17_Chr1g0166821 | 62.105 | 190 | 36 | 2 | 1 | 154 | 2 | 191 | 1.62e-78 | 243 |
| Msa0277660 | MtrunA17_Chr1g0183631 | 61.579 | 190 | 37 | 2 | 1 | 154 | 1 | 190 | 1.66e-77 | 241 |
| Msa0277660 | MtrunA17_Chr7g0261501 | 61.053 | 190 | 38 | 2 | 1 | 154 | 1 | 190 | 2.69e-77 | 241 |
| Msa0277660 | MtrunA17_Chr6g0486611 | 61.053 | 190 | 38 | 2 | 1 | 154 | 1 | 190 | 4.01e-75 | 234 |
| Msa0277660 | MtrunA17_Chr1g0187571 | 60.526 | 190 | 39 | 2 | 1 | 154 | 2 | 191 | 4.30e-75 | 235 |
| Msa0277660 | MtrunA17_Chr8g0390211 | 57.895 | 190 | 44 | 2 | 1 | 154 | 1 | 190 | 9.54e-70 | 220 |
| Msa0277660 | MtrunA17_Chr3g0140071 | 54.737 | 190 | 50 | 2 | 1 | 154 | 1 | 190 | 2.81e-66 | 211 |
| Msa0277660 | MtrunA17_Chr1g0146151 | 53.158 | 190 | 53 | 2 | 1 | 154 | 1 | 190 | 1.75e-65 | 209 |
| Msa0277660 | MtrunA17_Chr1g0167261 | 52.632 | 190 | 54 | 2 | 1 | 154 | 2 | 191 | 4.47e-63 | 201 |
| Msa0277660 | MtrunA17_Chr7g0214531 | 40.945 | 127 | 71 | 3 | 29 | 151 | 103 | 229 | 1.65e-26 | 107 |
| Msa0277660 | MtrunA17_Chr7g0253211 | 43.307 | 127 | 68 | 3 | 29 | 151 | 389 | 515 | 4.89e-26 | 106 |
| Msa0277660 | MtrunA17_Chr1g0213321 | 40.157 | 127 | 72 | 3 | 29 | 151 | 180 | 306 | 2.33e-25 | 104 |
| Msa0277660 | MtrunA17_Chr3g0140431 | 31.551 | 187 | 84 | 5 | 9 | 151 | 38 | 224 | 8.14e-24 | 99.8 |
| Msa0277660 | MtrunA17_Chr1g0146301 | 29.947 | 187 | 87 | 5 | 9 | 151 | 124 | 310 | 4.12e-23 | 97.8 |
| Msa0277660 | MtrunA17_Chr8g0340491 | 37.008 | 127 | 76 | 3 | 29 | 151 | 195 | 321 | 7.91e-22 | 94.0 |
| Msa0277660 | MtrunA17_Chr7g0251221 | 91.489 | 47 | 4 | 0 | 176 | 222 | 583 | 629 | 1.69e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277660 | AT1G72710.1 | 70.370 | 189 | 21 | 1 | 1 | 154 | 1 | 189 | 3.45e-90 | 274 |
| Msa0277660 | AT4G26100.1 | 70.526 | 190 | 20 | 2 | 1 | 154 | 1 | 190 | 9.27e-89 | 270 |
| Msa0277660 | AT5G57015.1 | 67.895 | 190 | 25 | 2 | 1 | 154 | 1 | 190 | 4.82e-86 | 263 |
| Msa0277660 | AT2G19470.1 | 65.263 | 190 | 30 | 2 | 1 | 154 | 1 | 190 | 7.13e-83 | 254 |
| Msa0277660 | AT1G03930.1 | 63.158 | 190 | 34 | 2 | 1 | 154 | 1 | 190 | 9.68e-80 | 248 |
| Msa0277660 | AT5G44100.1 | 61.579 | 190 | 37 | 2 | 1 | 154 | 1 | 190 | 9.82e-78 | 243 |
| Msa0277660 | AT5G44100.2 | 61.579 | 190 | 37 | 2 | 1 | 154 | 1 | 190 | 9.82e-78 | 243 |
| Msa0277660 | AT4G28540.1 | 60.526 | 190 | 39 | 3 | 1 | 154 | 5 | 194 | 1.35e-74 | 234 |
| Msa0277660 | AT5G43320.1 | 60.000 | 190 | 40 | 3 | 1 | 154 | 1 | 190 | 3.13e-74 | 233 |
| Msa0277660 | AT3G23340.1 | 60.526 | 190 | 39 | 3 | 1 | 154 | 1 | 190 | 3.19e-74 | 232 |
| Msa0277660 | AT5G43320.2 | 60.000 | 190 | 40 | 3 | 1 | 154 | 1 | 190 | 3.57e-74 | 230 |
| Msa0277660 | AT5G43320.3 | 60.000 | 190 | 40 | 3 | 1 | 154 | 1 | 190 | 3.57e-74 | 230 |
| Msa0277660 | AT1G04440.1 | 60.526 | 190 | 39 | 3 | 1 | 154 | 1 | 190 | 1.29e-73 | 231 |
| Msa0277660 | AT4G14340.2 | 58.421 | 190 | 43 | 2 | 1 | 154 | 7 | 196 | 6.40e-72 | 224 |
| Msa0277660 | AT4G14340.1 | 58.421 | 190 | 43 | 2 | 1 | 154 | 7 | 196 | 3.31e-71 | 225 |
| Msa0277660 | AT4G28880.3 | 58.947 | 190 | 42 | 2 | 1 | 154 | 1 | 190 | 2.43e-70 | 221 |
| Msa0277660 | AT4G28880.2 | 58.947 | 190 | 42 | 2 | 1 | 154 | 1 | 190 | 2.43e-70 | 221 |
| Msa0277660 | AT4G28880.1 | 58.947 | 190 | 42 | 2 | 1 | 154 | 1 | 190 | 2.43e-70 | 221 |
| Msa0277660 | AT4G28880.4 | 58.947 | 190 | 42 | 2 | 1 | 154 | 1 | 190 | 2.43e-70 | 221 |
| Msa0277660 | AT4G28860.2 | 57.895 | 190 | 44 | 2 | 1 | 154 | 1 | 190 | 3.11e-70 | 220 |
| Msa0277660 | AT4G28860.1 | 57.895 | 190 | 44 | 2 | 1 | 154 | 1 | 190 | 8.54e-70 | 220 |
| Msa0277660 | AT3G23340.2 | 59.659 | 176 | 49 | 2 | 1 | 154 | 1 | 176 | 1.43e-68 | 218 |
| Msa0277660 | AT4G08800.1 | 48.947 | 190 | 29 | 4 | 1 | 154 | 1 | 158 | 2.75e-47 | 158 |
| Msa0277660 | AT5G18190.2 | 43.307 | 127 | 68 | 3 | 29 | 151 | 195 | 321 | 9.56e-26 | 105 |
| Msa0277660 | AT5G18190.1 | 43.307 | 127 | 68 | 3 | 29 | 151 | 195 | 321 | 9.56e-26 | 105 |
| Msa0277660 | AT3G03940.1 | 43.307 | 127 | 68 | 3 | 29 | 151 | 205 | 331 | 3.81e-25 | 104 |
| Msa0277660 | AT3G13670.1 | 38.583 | 127 | 74 | 3 | 29 | 151 | 203 | 329 | 2.34e-24 | 102 |
| Msa0277660 | AT2G25760.2 | 30.348 | 201 | 87 | 6 | 4 | 151 | 100 | 300 | 3.12e-24 | 101 |
| Msa0277660 | AT2G25760.1 | 30.348 | 201 | 87 | 6 | 4 | 151 | 100 | 300 | 3.30e-24 | 101 |
Find 67 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGATTGAAGGATATTT+AGG | 0.218210 | 2_3:-10401195 | None:intergenic |
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 2_3:+10402308 | Msa0277660:CDS |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 2_3:+10402105 | Msa0277660:CDS |
| TCTTTCGGAGAGATCTATTT+AGG | 0.249141 | 2_3:+10401413 | Msa0277660:CDS |
| TTCCGTCTTGGGAGGAAAAT+TGG | 0.260322 | 2_3:+10401383 | Msa0277660:CDS |
| TTGAAATATTTATCCACGTT+TGG | 0.293405 | 2_3:-10404689 | None:intergenic |
| AAACAGAGCATAGCATTCTT+TGG | 0.320317 | 2_3:+10405010 | Msa0277660:CDS |
| TGAAATATTTATCCACGTTT+GGG | 0.338383 | 2_3:-10404688 | None:intergenic |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 2_3:+10402309 | Msa0277660:CDS |
| ATTAAACCCTAATTGAAAAT+CGG | 0.386169 | 2_3:-10401338 | None:intergenic |
| GGTTTAATGGAACCTCGAAT+TGG | 0.394217 | 2_3:+10401353 | Msa0277660:exon |
| AAAATTGGTAGCGGATCTTT+CGG | 0.404618 | 2_3:+10401398 | Msa0277660:CDS |
| ATGAATGCTCGTCTTGGAAT+TGG | 0.412158 | 2_3:+10403527 | Msa0277660:CDS |
| CAAAATGCAGATGAATTTCA+CGG | 0.424897 | 2_3:+10403796 | Msa0277660:intron |
| AATATCCTTCAATCTCACTA+TGG | 0.430325 | 2_3:+10401199 | Msa0277660:five_prime_UTR |
| TTGGGAATAAGTTCCGTCTT+GGG | 0.445582 | 2_3:+10401372 | Msa0277660:CDS |
| GTTTAATGGAACCTCGAATT+GGG | 0.447782 | 2_3:+10401354 | Msa0277660:exon |
| GCCTCACTATATTTGCTTCG+AGG | 0.449249 | 2_3:+10404717 | Msa0277660:CDS |
| TCTTATGCTTGCTGATCAAA+TGG | 0.460267 | 2_3:+10402148 | Msa0277660:CDS |
| GTCAGCCTTGCAAAGAATAT+CGG | 0.466990 | 2_3:+10404600 | Msa0277660:CDS |
| AAAGAATGCTATGCTCTGTT+TGG | 0.472006 | 2_3:-10405008 | None:intergenic |
| AACGATTGAGAGTGAGGTTG+AGG | 0.476060 | 2_3:-10401245 | None:intergenic |
| ACACCGGACCATTTCACATT+CGG | 0.480710 | 2_3:-10402029 | None:intergenic |
| CTGGGATACCGAATGTGAAA+TGG | 0.480856 | 2_3:+10402021 | Msa0277660:CDS |
| TAGATGTACATCATTGACTT+TGG | 0.482232 | 2_3:+10402442 | Msa0277660:intron |
| ATTGGGAATAAGTTCCGTCT+TGG | 0.488327 | 2_3:+10401371 | Msa0277660:CDS |
| TTATCCACGTTTGGGAAAAG+TGG | 0.492195 | 2_3:-10404680 | None:intergenic |
| AAACGTGGATAAATATTTCA+AGG | 0.494306 | 2_3:+10404691 | Msa0277660:CDS |
| GCTAGTATGAATGCTCGTCT+TGG | 0.497410 | 2_3:+10403521 | Msa0277660:CDS |
| ATCCTAGTGATGGATTTACT+TGG | 0.499759 | 2_3:+10402068 | Msa0277660:CDS |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 2_3:+10402082 | Msa0277660:CDS |
| CGTCATCATAGAAGAAGAAA+GGG | 0.513357 | 2_3:-10401284 | None:intergenic |
| CGGAACTTATTCCCAATTCG+AGG | 0.514181 | 2_3:-10401365 | None:intergenic |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 2_3:+10402302 | Msa0277660:CDS |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 2_3:-10402092 | None:intergenic |
| GCGTCATCATAGAAGAAGAA+AGG | 0.527415 | 2_3:-10401285 | None:intergenic |
| GTGAGCCATAGTGAGATTGA+AGG | 0.527676 | 2_3:-10401204 | None:intergenic |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 2_3:-10402305 | None:intergenic |
| GTGAAATGGTCCGGTGTCGA+AGG | 0.536640 | 2_3:+10402035 | Msa0277660:CDS |
| CTTCGAGGCAGTCATGGAGA+AGG | 0.536882 | 2_3:+10404732 | Msa0277660:CDS |
| ATTGAGAGTGAGGTTGAGGA+TGG | 0.541513 | 2_3:-10401241 | None:intergenic |
| GGTTTCAATGTTAAATGCAA+AGG | 0.543722 | 2_3:+10403817 | Msa0277660:CDS |
| CACATCAGCATATTCCCTAC+AGG | 0.543817 | 2_3:+10402491 | Msa0277660:CDS |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 2_3:+10402301 | Msa0277660:CDS |
| TGAGGATGGATGTGAGATTG+AGG | 0.544951 | 2_3:-10401227 | None:intergenic |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 2_3:-10402091 | None:intergenic |
| ATTGTACTCTCCTTCGACAC+CGG | 0.548807 | 2_3:-10402045 | None:intergenic |
| TCTCTCCGATATTCTTTGCA+AGG | 0.551276 | 2_3:-10404605 | None:intergenic |
| GGCTTCAACGATTGAGAGTG+AGG | 0.560594 | 2_3:-10401251 | None:intergenic |
| ATGCCATAAAAGTACCTGTA+GGG | 0.563109 | 2_3:-10402505 | None:intergenic |
| GAGGATGGATGTGAGATTGA+GGG | 0.569441 | 2_3:-10401226 | None:intergenic |
| CAGAGAGAGTAAGAATCTGA+CGG | 0.570204 | 2_3:+10403484 | Msa0277660:intron |
| AGAGTACAATATCCTAGTGA+TGG | 0.570391 | 2_3:+10402058 | Msa0277660:CDS |
| ATACCGAATGTGAAATGGTC+CGG | 0.578759 | 2_3:+10402026 | Msa0277660:CDS |
| AGAGAGAGTAAGAATCTGAC+GGG | 0.588015 | 2_3:+10403485 | Msa0277660:intron |
| TATTTGCTTCGAGGCAGTCA+TGG | 0.593443 | 2_3:+10404726 | Msa0277660:CDS |
| GGAATAAGTTCCGTCTTGGG+AGG | 0.606788 | 2_3:+10401375 | Msa0277660:CDS |
| TGAGAACAGTGCTGTTCGAG+AGG | 0.614397 | 2_3:+10404628 | Msa0277660:CDS |
| GAGAACAGTGCTGTTCGAGA+GGG | 0.626581 | 2_3:+10404629 | Msa0277660:CDS |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 2_3:+10402312 | Msa0277660:CDS |
| CTTGGGAGGAAAATTGGTAG+CGG | 0.633001 | 2_3:+10401389 | Msa0277660:CDS |
| GGCCAAGTAAATCCATCACT+AGG | 0.640405 | 2_3:-10402070 | None:intergenic |
| GCCTCGAAGCAAATATAGTG+AGG | 0.645471 | 2_3:-10404718 | None:intergenic |
| TCATCATAGAAGAAGAAAGG+GGG | 0.676898 | 2_3:-10401282 | None:intergenic |
| CATCATAGAAGAAGAAAGGG+GGG | 0.700674 | 2_3:-10401281 | None:intergenic |
| CACGCCTCCCTAAACCCATG+AGG | 0.721724 | 2_3:-10402316 | None:intergenic |
| GTCATCATAGAAGAAGAAAG+GGG | 0.746791 | 2_3:-10401283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTGTGAATTTT+AGG | + | chr2_3:10401469-10401488 | Msa0277660:intron | 10.0% |
| !!! | ATTTTTTTTTGTGAATTTTA+GGG | + | chr2_3:10401470-10401489 | Msa0277660:intron | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | + | chr2_3:10401602-10401621 | Msa0277660:intron | 10.0% |
| !! | TTGAATAAAAAGTTATTAAA+AGG | + | chr2_3:10403235-10403254 | Msa0277660:intron | 10.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | - | chr2_3:10401569-10401588 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | - | chr2_3:10401570-10401589 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | + | chr2_3:10402105-10402124 | Msa0277660:CDS | 15.0% |
| !!! | TTTTGTAAAATCTATTATCA+TGG | + | chr2_3:10402615-10402634 | Msa0277660:intron | 15.0% |
| !!! | TGAATCCTTTAATATTATTT+TGG | + | chr2_3:10403015-10403034 | Msa0277660:intron | 15.0% |
| !! | GATTACCAAAATAATATTAA+AGG | - | chr2_3:10403023-10403042 | None:intergenic | 15.0% |
| !! | TTCATTTGAATCTTTATTAT+TGG | + | chr2_3:10404376-10404395 | Msa0277660:intron | 15.0% |
| !!! | ATAATCTTTGACTTATTTTT+AGG | + | chr2_3:10404968-10404987 | Msa0277660:intron | 15.0% |
| !! | ATTAAACCCTAATTGAAAAT+CGG | - | chr2_3:10401341-10401360 | None:intergenic | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | - | chr2_3:10401524-10401543 | None:intergenic | 20.0% |
| !! | ATAAACAAATTCACTAAGTT+GGG | - | chr2_3:10401920-10401939 | None:intergenic | 20.0% |
| !! | AATAAACAAATTCACTAAGT+TGG | - | chr2_3:10401921-10401940 | None:intergenic | 20.0% |
| !!! | CTTAGTGAATTTGTTTATTT+TGG | + | chr2_3:10401922-10401941 | Msa0277660:intron | 20.0% |
| !!! | TTTTTTGATTTTATTCAGCA+TGG | + | chr2_3:10402534-10402553 | Msa0277660:intron | 20.0% |
| !!! | AAAATTCTATATCTGGAATT+TGG | + | chr2_3:10402638-10402657 | Msa0277660:intron | 20.0% |
| !! | AGTTATTATGTTTGTAAGTA+TGG | - | chr2_3:10402961-10402980 | None:intergenic | 20.0% |
| !! | TTGATTGTATACCTATTATA+TGG | - | chr2_3:10403076-10403095 | None:intergenic | 20.0% |
| !! | GAAAAACTAATTGATACTAA+TGG | - | chr2_3:10403142-10403161 | None:intergenic | 20.0% |
| !! | GAATTTATGCCAATTAAATT+TGG | + | chr2_3:10403259-10403278 | Msa0277660:intron | 20.0% |
| !!! | AAGTGATATTTTTTTGAACA+AGG | - | chr2_3:10403341-10403360 | None:intergenic | 20.0% |
| !! | AATAAATAATCGTAAAGACT+AGG | - | chr2_3:10403366-10403385 | None:intergenic | 20.0% |
| !!! | AATATACTCTATTGTGTTTT+CGG | + | chr2_3:10403434-10403453 | Msa0277660:intron | 20.0% |
| !!! | GTTCTTATGTATTTTTTAAG+AGG | + | chr2_3:10403674-10403693 | Msa0277660:intron | 20.0% |
| !!! | TTATGTATTTTTTAAGAGGA+AGG | + | chr2_3:10403678-10403697 | Msa0277660:intron | 20.0% |
| !! | TGAGATTGAAGAATAAAATT+GGG | - | chr2_3:10403958-10403977 | None:intergenic | 20.0% |
| !!! | TATTTTTGACAAATAGCTAA+TGG | + | chr2_3:10404821-10404840 | Msa0277660:intron | 20.0% |
| !! | TTCAATTCCGATTTTCAATT+AGG | + | chr2_3:10401331-10401350 | Msa0277660:five_prime_UTR | 25.0% |
| !! | TCAATTCCGATTTTCAATTA+GGG | + | chr2_3:10401332-10401351 | Msa0277660:five_prime_UTR | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | + | chr2_3:10401340-10401359 | Msa0277660:exon | 25.0% |
| ! | TTCACAAAAATGCAAGAAAT+TGG | - | chr2_3:10401451-10401470 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTTTTTGTAGC+AGG | + | chr2_3:10401496-10401515 | Msa0277660:intron | 25.0% |
| !!! | TCAATAACAACGAAAGTATT+CGG | - | chr2_3:10401640-10401659 | None:intergenic | 25.0% |
| ! | TTATTGAAGTTTGATGAGAA+GGG | + | chr2_3:10401653-10401672 | Msa0277660:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | + | chr2_3:10401733-10401752 | Msa0277660:intron | 25.0% |
| ! | TAGGTAATTAGATGATTGAT+TGG | + | chr2_3:10401861-10401880 | Msa0277660:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+GGG | + | chr2_3:10401862-10401881 | Msa0277660:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | + | chr2_3:10401961-10401980 | Msa0277660:intron | 25.0% |
| ! | TTGAGACATTATAAGAAAAG+TGG | - | chr2_3:10402214-10402233 | None:intergenic | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | + | chr2_3:10402273-10402292 | Msa0277660:CDS | 25.0% |
| ! | ATGATAGGGAATATATTGAT+GGG | - | chr2_3:10402586-10402605 | None:intergenic | 25.0% |
| !! | CAAAATAAGAAAGCATGATA+GGG | - | chr2_3:10402600-10402619 | None:intergenic | 25.0% |
| !! | ACAAAATAAGAAAGCATGAT+AGG | - | chr2_3:10402601-10402620 | None:intergenic | 25.0% |
| ! | ATCATGGAAAATTCTATATC+TGG | + | chr2_3:10402631-10402650 | Msa0277660:intron | 25.0% |
| ! | AATTTGGACATCCATATAAT+AGG | + | chr2_3:10403062-10403081 | Msa0277660:intron | 25.0% |
| ! | CCAATGAAACCAAATTTAAT+TGG | - | chr2_3:10403271-10403290 | None:intergenic | 25.0% |
| !! | CCAATTAAATTTGGTTTCAT+TGG | + | chr2_3:10403268-10403287 | Msa0277660:intron | 25.0% |
| !!! | TGATATTTTTTTGAACAAGG+AGG | - | chr2_3:10403338-10403357 | None:intergenic | 25.0% |
| ! | AATCAATGGCTATTAAGAAA+GGG | - | chr2_3:10403582-10403601 | None:intergenic | 25.0% |
| ! | AAATCAATGGCTATTAAGAA+AGG | - | chr2_3:10403583-10403602 | None:intergenic | 25.0% |
| !!! | CATTTTCAGGTAAAAATCAA+TGG | - | chr2_3:10403596-10403615 | None:intergenic | 25.0% |
| ! | AGTCTATCACCTTTATTATT+TGG | + | chr2_3:10403706-10403725 | Msa0277660:intron | 25.0% |
| ! | TGTCAAATGCCAAATAATAA+AGG | - | chr2_3:10403718-10403737 | None:intergenic | 25.0% |
| !! | TTTTTATAGGTCATACTGAA+CGG | - | chr2_3:10403874-10403893 | None:intergenic | 25.0% |
| ! | GTGAGATTGAAGAATAAAAT+TGG | - | chr2_3:10403959-10403978 | None:intergenic | 25.0% |
| ! | CTCAAATTAAGAAATTAACC+AGG | - | chr2_3:10404211-10404230 | None:intergenic | 25.0% |
| ! | TGAAATATTTATCCACGTTT+GGG | - | chr2_3:10404691-10404710 | None:intergenic | 25.0% |
| ! | TTGAAATATTTATCCACGTT+TGG | - | chr2_3:10404692-10404711 | None:intergenic | 25.0% |
| ! | AAACGTGGATAAATATTTCA+AGG | + | chr2_3:10404691-10404710 | Msa0277660:CDS | 25.0% |
| ! | TTTGTCAAAAATAACCACTA+TGG | - | chr2_3:10404852-10404871 | None:intergenic | 25.0% |
| !!! | ATCTTTGACTTATTTTTAGG+TGG | + | chr2_3:10404971-10404990 | Msa0277660:intron | 25.0% |
| AGTGAGATTGAAGGATATTT+AGG | - | chr2_3:10401198-10401217 | None:intergenic | 30.0% | |
| AATATCCTTCAATCTCACTA+TGG | + | chr2_3:10401199-10401218 | Msa0277660:five_prime_UTR | 30.0% | |
| GTTATTGAAGTTTGATGAGA+AGG | + | chr2_3:10401652-10401671 | Msa0277660:intron | 30.0% | |
| TATTGAAGTTTGATGAGAAG+GGG | + | chr2_3:10401654-10401673 | Msa0277660:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | + | chr2_3:10401741-10401760 | Msa0277660:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | + | chr2_3:10401742-10401761 | Msa0277660:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | + | chr2_3:10401759-10401778 | Msa0277660:intron | 30.0% | |
| TATTACTCACTTGGCTTAAA+CGG | + | chr2_3:10401970-10401989 | Msa0277660:intron | 30.0% | |
| ! | GTTTCTTTTCTTTGTTAGCT+GGG | + | chr2_3:10402003-10402022 | Msa0277660:intron | 30.0% |
| TGAATAAATCCTCAAGACTA+GGG | - | chr2_3:10402094-10402113 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | - | chr2_3:10402095-10402114 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | + | chr2_3:10402274-10402293 | Msa0277660:CDS | 30.0% |
| AATTGATACATAACAAGCGT+TGG | - | chr2_3:10402404-10402423 | None:intergenic | 30.0% | |
| ATGATGTACATCTACATAAG+AGG | - | chr2_3:10402436-10402455 | None:intergenic | 30.0% | |
| !! | TAGATGTACATCATTGACTT+TGG | + | chr2_3:10402442-10402461 | Msa0277660:intron | 30.0% |
| TGATAGGGAATATATTGATG+GGG | - | chr2_3:10402585-10402604 | None:intergenic | 30.0% | |
| CATGATAGGGAATATATTGA+TGG | - | chr2_3:10402587-10402606 | None:intergenic | 30.0% | |
| GCTGATTACTACTATTTAGT+AGG | + | chr2_3:10402694-10402713 | Msa0277660:intron | 30.0% | |
| GATTACTACTATTTAGTAGG+AGG | + | chr2_3:10402697-10402716 | Msa0277660:intron | 30.0% | |
| AAGAAAATAGAATCAATGCC+AGG | - | chr2_3:10402822-10402841 | None:intergenic | 30.0% | |
| AATGGATCTTAGTTCAAACA+AGG | - | chr2_3:10402934-10402953 | None:intergenic | 30.0% | |
| ATAACTTATGTTGCTGTAAG+TGG | + | chr2_3:10403404-10403423 | Msa0277660:intron | 30.0% | |
| ! | AGCAAAAAACTCACATTTTC+AGG | - | chr2_3:10403609-10403628 | None:intergenic | 30.0% |
| CAAAATGCAGATGAATTTCA+CGG | + | chr2_3:10403796-10403815 | Msa0277660:intron | 30.0% | |
| GGTTTCAATGTTAAATGCAA+AGG | + | chr2_3:10403817-10403836 | Msa0277660:CDS | 30.0% | |
| GAAGAATAAAATTGGGCTTA+GGG | - | chr2_3:10403951-10403970 | None:intergenic | 30.0% | |
| TGAAGAATAAAATTGGGCTT+AGG | - | chr2_3:10403952-10403971 | None:intergenic | 30.0% | |
| !! | TGAGACATAGAGTATTTTGA+GGG | - | chr2_3:10404080-10404099 | None:intergenic | 30.0% |
| ! | CAATCAACTTACATTTTTCC+TGG | + | chr2_3:10404190-10404209 | Msa0277660:intron | 30.0% |
| GATATCAGTTATGTGCAATT+GGG | + | chr2_3:10404294-10404313 | Msa0277660:intron | 30.0% | |
| TGCAGAAAGAATCAAATGAA+TGG | + | chr2_3:10404399-10404418 | Msa0277660:intron | 30.0% | |
| GCAGAAAGAATCAAATGAAT+GGG | + | chr2_3:10404400-10404419 | Msa0277660:intron | 30.0% | |
| ! | AAGAATCAAATGAATGGGTT+TGG | + | chr2_3:10404405-10404424 | Msa0277660:intron | 30.0% |
| AGCACAACATACATTCATTT+AGG | - | chr2_3:10404511-10404530 | None:intergenic | 30.0% | |
| TATTTCTTCTTGTGAACGTT+TGG | + | chr2_3:10404539-10404558 | Msa0277660:intron | 30.0% | |
| ! | AATTTACCTGTCATCTTTTC+AGG | + | chr2_3:10404572-10404591 | Msa0277660:intron | 30.0% |
| TACAATGTAAGCTATAGAAC+AGG | + | chr2_3:10404775-10404794 | Msa0277660:intron | 30.0% | |
| !!! | TTATTTTTAGGTGGAAGACT+TGG | + | chr2_3:10404980-10404999 | Msa0277660:intron | 30.0% |
| TCATCATAGAAGAAGAAAGG+GGG | - | chr2_3:10401285-10401304 | None:intergenic | 35.0% | |
| GTCATCATAGAAGAAGAAAG+GGG | - | chr2_3:10401286-10401305 | None:intergenic | 35.0% | |
| CGTCATCATAGAAGAAGAAA+GGG | - | chr2_3:10401287-10401306 | None:intergenic | 35.0% | |
| GTTTAATGGAACCTCGAATT+GGG | + | chr2_3:10401354-10401373 | Msa0277660:exon | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | + | chr2_3:10401398-10401417 | Msa0277660:CDS | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | + | chr2_3:10401413-10401432 | Msa0277660:CDS | 35.0% | |
| ! | GTTTTCGATACTGAACTTGT+TGG | + | chr2_3:10401791-10401810 | Msa0277660:intron | 35.0% |
| GATTACAGAAGCAGGTAATT+AGG | + | chr2_3:10401842-10401861 | Msa0277660:intron | 35.0% | |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | + | chr2_3:10401980-10401999 | Msa0277660:intron | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | + | chr2_3:10401981-10402000 | Msa0277660:intron | 35.0% |
| ! | GGTTTCTTTTCTTTGTTAGC+TGG | + | chr2_3:10402002-10402021 | Msa0277660:intron | 35.0% |
| AGAGTACAATATCCTAGTGA+TGG | + | chr2_3:10402058-10402077 | Msa0277660:CDS | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | + | chr2_3:10402068-10402087 | Msa0277660:CDS | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | + | chr2_3:10402148-10402167 | Msa0277660:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | + | chr2_3:10402309-10402328 | Msa0277660:CDS | 35.0% | |
| ! | ATTCCCTACAGGTACTTTTA+TGG | + | chr2_3:10402502-10402521 | Msa0277660:intron | 35.0% |
| !! | ATGCCATAAAAGTACCTGTA+GGG | - | chr2_3:10402508-10402527 | None:intergenic | 35.0% |
| ! | AGGTACTTTTATGGCATCAA+TGG | + | chr2_3:10402511-10402530 | Msa0277660:intron | 35.0% |
| GGACAAATAACTTAACGAAC+TGG | - | chr2_3:10402892-10402911 | None:intergenic | 35.0% | |
| GGCTAACAAAACTATCATCA+AGG | - | chr2_3:10402913-10402932 | None:intergenic | 35.0% | |
| GTTTGTAAGTATGGCATCAA+TGG | - | chr2_3:10402952-10402971 | None:intergenic | 35.0% | |
| TTTAATAGAGCAAAGCCGTA+GGG | + | chr2_3:10403628-10403647 | Msa0277660:intron | 35.0% | |
| ! | TAGGGTTTGAAGTTGTAGAA+GGG | - | chr2_3:10403933-10403952 | None:intergenic | 35.0% |
| ! | TTAGGGTTTGAAGTTGTAGA+AGG | - | chr2_3:10403934-10403953 | None:intergenic | 35.0% |
| !! | GTGAGACATAGAGTATTTTG+AGG | - | chr2_3:10404081-10404100 | None:intergenic | 35.0% |
| TAGTGAGAGACTTAGATTGA+CGG | - | chr2_3:10404103-10404122 | None:intergenic | 35.0% | |
| GATTGAATTTCTGCGATTGA+GGG | - | chr2_3:10404175-10404194 | None:intergenic | 35.0% | |
| TGATTGAATTTCTGCGATTG+AGG | - | chr2_3:10404176-10404195 | None:intergenic | 35.0% | |
| CGATATCAGTTATGTGCAAT+TGG | + | chr2_3:10404293-10404312 | Msa0277660:intron | 35.0% | |
| ! | ATGAATGGGTTTGGATTGTT+AGG | + | chr2_3:10404414-10404433 | Msa0277660:intron | 35.0% |
| TTTGGATTGTTAGGCTCATA+AGG | + | chr2_3:10404423-10404442 | Msa0277660:intron | 35.0% | |
| AAGATGCAATGATTCTGAAC+AGG | + | chr2_3:10404468-10404487 | Msa0277660:intron | 35.0% | |
| TAGAACAGGCTAACAAAACA+TGG | + | chr2_3:10404789-10404808 | Msa0277660:intron | 35.0% | |
| AGCTAATGGTTATTCCATAG+TGG | + | chr2_3:10404835-10404854 | Msa0277660:intron | 35.0% | |
| AAAGAATGCTATGCTCTGTT+TGG | - | chr2_3:10405011-10405030 | None:intergenic | 35.0% | |
| AAACAGAGCATAGCATTCTT+TGG | + | chr2_3:10405010-10405029 | Msa0277660:CDS | 35.0% | |
| CATCATAGAAGAAGAAAGGG+GGG | - | chr2_3:10401284-10401303 | None:intergenic | 40.0% | |
| GCGTCATCATAGAAGAAGAA+AGG | - | chr2_3:10401288-10401307 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | + | chr2_3:10401353-10401372 | Msa0277660:exon | 40.0% | |
| ATTGGGAATAAGTTCCGTCT+TGG | + | chr2_3:10401371-10401390 | Msa0277660:CDS | 40.0% | |
| TTGGGAATAAGTTCCGTCTT+GGG | + | chr2_3:10401372-10401391 | Msa0277660:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | - | chr2_3:10401388-10401407 | None:intergenic | 40.0% |
| !! | GAAGTATCGATTACAGAAGC+AGG | + | chr2_3:10401834-10401853 | Msa0277660:intron | 40.0% |
| !! | GATGATTGATTGGGTTAGTC+TGG | + | chr2_3:10401871-10401890 | Msa0277660:intron | 40.0% |
| ATACCGAATGTGAAATGGTC+CGG | + | chr2_3:10402026-10402045 | Msa0277660:CDS | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | + | chr2_3:10402151-10402170 | Msa0277660:intron | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | + | chr2_3:10402152-10402171 | Msa0277660:intron | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | - | chr2_3:10402279-10402298 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | + | chr2_3:10402301-10402320 | Msa0277660:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | + | chr2_3:10402302-10402321 | Msa0277660:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | - | chr2_3:10402308-10402327 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | + | chr2_3:10402308-10402327 | Msa0277660:CDS | 40.0% | |
| !! | GATGCCATAAAAGTACCTGT+AGG | - | chr2_3:10402509-10402528 | None:intergenic | 40.0% |
| ! | CTAATTTTGAGCTTTGCGCA+AGG | + | chr2_3:10402776-10402795 | Msa0277660:intron | 40.0% |
| ACTTAACGAACTGGTGTAAC+AGG | - | chr2_3:10402883-10402902 | None:intergenic | 40.0% | |
| TATGTTGCTGTAAGTGGTCA+AGG | + | chr2_3:10403410-10403429 | Msa0277660:intron | 40.0% | |
| GATTCTTACTCTCTCTGCAA+GGG | - | chr2_3:10403481-10403500 | None:intergenic | 40.0% | |
| AGATTCTTACTCTCTCTGCA+AGG | - | chr2_3:10403482-10403501 | None:intergenic | 40.0% | |
| CAGAGAGAGTAAGAATCTGA+CGG | + | chr2_3:10403484-10403503 | Msa0277660:intron | 40.0% | |
| AGAGAGAGTAAGAATCTGAC+GGG | + | chr2_3:10403485-10403504 | Msa0277660:intron | 40.0% | |
| ATGAATGCTCGTCTTGGAAT+TGG | + | chr2_3:10403527-10403546 | Msa0277660:CDS | 40.0% | |
| CTTTAATAGAGCAAAGCCGT+AGG | + | chr2_3:10403627-10403646 | Msa0277660:intron | 40.0% | |
| ! | GGGAGTGACGAACTTTTTAT+AGG | - | chr2_3:10403887-10403906 | None:intergenic | 40.0% |
| GAGACGTACATTGAGAAAGA+GGG | - | chr2_3:10403911-10403930 | None:intergenic | 40.0% | |
| ATGAAGATCTGGGTTTCAGA+TGG | - | chr2_3:10403989-10404008 | None:intergenic | 40.0% | |
| TGTGAGAGTGATGAAGATCT+GGG | - | chr2_3:10403999-10404018 | None:intergenic | 40.0% | |
| TCACTTTCCTTCAATCTCAC+CGG | + | chr2_3:10404026-10404045 | Msa0277660:intron | 40.0% | |
| TCACCCTCAATCTTACATCT+CGG | + | chr2_3:10404052-10404071 | Msa0277660:intron | 40.0% | |
| GAACCGAGATGTAAGATTGA+GGG | - | chr2_3:10404058-10404077 | None:intergenic | 40.0% | |
| CAGTCTACTTCAGTTTCTCA+AGG | + | chr2_3:10404344-10404363 | Msa0277660:intron | 40.0% | |
| GTCAGCCTTGCAAAGAATAT+CGG | + | chr2_3:10404600-10404619 | Msa0277660:CDS | 40.0% | |
| TCTCTCCGATATTCTTTGCA+AGG | - | chr2_3:10404608-10404627 | None:intergenic | 40.0% | |
| TTATCCACGTTTGGGAAAAG+TGG | - | chr2_3:10404683-10404702 | None:intergenic | 40.0% | |
| AGGCTAACAAAACATGGTCT+AGG | + | chr2_3:10404795-10404814 | Msa0277660:intron | 40.0% | |
| GGCTAACAAAACATGGTCTA+GGG | + | chr2_3:10404796-10404815 | Msa0277660:intron | 40.0% | |
| GTGAGCCATAGTGAGATTGA+AGG | - | chr2_3:10401207-10401226 | None:intergenic | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | - | chr2_3:10401229-10401248 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | - | chr2_3:10401230-10401249 | None:intergenic | 45.0% | |
| ATTGAGAGTGAGGTTGAGGA+TGG | - | chr2_3:10401244-10401263 | None:intergenic | 45.0% | |
| AACGATTGAGAGTGAGGTTG+AGG | - | chr2_3:10401248-10401267 | None:intergenic | 45.0% | |
| CGGAACTTATTCCCAATTCG+AGG | - | chr2_3:10401368-10401387 | None:intergenic | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | + | chr2_3:10401383-10401402 | Msa0277660:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | + | chr2_3:10401389-10401408 | Msa0277660:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | + | chr2_3:10401888-10401907 | Msa0277660:intron | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | + | chr2_3:10402021-10402040 | Msa0277660:CDS | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | - | chr2_3:10402032-10402051 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | - | chr2_3:10402048-10402067 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | - | chr2_3:10402073-10402092 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | + | chr2_3:10402082-10402101 | Msa0277660:CDS | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | + | chr2_3:10402312-10402331 | Msa0277660:CDS | 45.0% | |
| CACATCAGCATATTCCCTAC+AGG | + | chr2_3:10402491-10402510 | Msa0277660:CDS | 45.0% | |
| !!! | CTTTCCTGGTTTTGCATTCC+TGG | + | chr2_3:10402801-10402820 | Msa0277660:intron | 45.0% |
| AATGCCAGGAATGCAAAACC+AGG | - | chr2_3:10402808-10402827 | None:intergenic | 45.0% | |
| CAGACTCTTTCCTTCTCTCT+GGG | + | chr2_3:10403294-10403313 | Msa0277660:intron | 45.0% | |
| AGACTCTTTCCTTCTCTCTG+GGG | + | chr2_3:10403295-10403314 | Msa0277660:intron | 45.0% | |
| TATTACACACCCCAGAGAGA+AGG | - | chr2_3:10403307-10403326 | None:intergenic | 45.0% | |
| GCTAGTATGAATGCTCGTCT+TGG | + | chr2_3:10403521-10403540 | Msa0277660:CDS | 45.0% | |
| GCGACTCTAAATCATCCCTA+CGG | - | chr2_3:10403646-10403665 | None:intergenic | 45.0% | |
| ! | AGGGATGATTTAGAGTCGCT+CGG | + | chr2_3:10403647-10403666 | Msa0277660:intron | 45.0% |
| CGTACATTGAGAAAGAGGGA+GGG | - | chr2_3:10403907-10403926 | None:intergenic | 45.0% | |
| ACGTACATTGAGAAAGAGGG+AGG | - | chr2_3:10403908-10403927 | None:intergenic | 45.0% | |
| GGAGACGTACATTGAGAAAG+AGG | - | chr2_3:10403912-10403931 | None:intergenic | 45.0% | |
| GTGTGAGAGTGATGAAGATC+TGG | - | chr2_3:10404000-10404019 | None:intergenic | 45.0% | |
| GGAACCGAGATGTAAGATTG+AGG | - | chr2_3:10404059-10404078 | None:intergenic | 45.0% | |
| TTTCTGCGATTGAGGGTGAT+AGG | - | chr2_3:10404168-10404187 | None:intergenic | 45.0% | |
| !! | TGTGCAATTGGGTTTTGTCG+TGG | + | chr2_3:10404305-10404324 | Msa0277660:intron | 45.0% |
| !! | GTGCAATTGGGTTTTGTCGT+GGG | + | chr2_3:10404306-10404325 | Msa0277660:intron | 45.0% |
| CTGAAGTAGACTGCAAACCA+CGG | - | chr2_3:10404337-10404356 | None:intergenic | 45.0% | |
| CACATGCCTGAAAAGATGAC+AGG | - | chr2_3:10404581-10404600 | None:intergenic | 45.0% | |
| GCCTCACTATATTTGCTTCG+AGG | + | chr2_3:10404717-10404736 | Msa0277660:CDS | 45.0% | |
| GCCTCGAAGCAAATATAGTG+AGG | - | chr2_3:10404721-10404740 | None:intergenic | 45.0% | |
| TATTTGCTTCGAGGCAGTCA+TGG | + | chr2_3:10404726-10404745 | Msa0277660:CDS | 45.0% | |
| !!! | TATTATTTTTTTAGATAATT+TGG | + | chr2_3:10403046-10403065 | Msa0277660:intron | 5.0% |
| GGCTTCAACGATTGAGAGTG+AGG | - | chr2_3:10401254-10401273 | None:intergenic | 50.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | + | chr2_3:10401375-10401394 | Msa0277660:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | - | chr2_3:10401903-10401922 | None:intergenic | 50.0% | |
| CTTTGCGCAAGGAACTTTCC+TGG | + | chr2_3:10402787-10402806 | Msa0277660:intron | 50.0% | |
| CTGGTGTAACAGGTCATGCA+AGG | - | chr2_3:10402873-10402892 | None:intergenic | 50.0% | |
| CCAGAGAGAAGGAAAGAGTC+TGG | - | chr2_3:10403296-10403315 | None:intergenic | 50.0% | |
| CCAGACTCTTTCCTTCTCTC+TGG | + | chr2_3:10403293-10403312 | Msa0277660:intron | 50.0% | |
| !! | ACGAACGATTTGGTGGTGAC+AGG | - | chr2_3:10404135-10404154 | None:intergenic | 50.0% |
| ! | GGGTGAAACGAACGATTTGG+TGG | - | chr2_3:10404142-10404161 | None:intergenic | 50.0% |
| CGTGGGTGAAACGAACGATT+TGG | - | chr2_3:10404145-10404164 | None:intergenic | 50.0% | |
| ! | TGAGAACAGTGCTGTTCGAG+AGG | + | chr2_3:10404628-10404647 | Msa0277660:CDS | 50.0% |
| ! | GAGAACAGTGCTGTTCGAGA+GGG | + | chr2_3:10404629-10404648 | Msa0277660:CDS | 50.0% |
| !! | GCTTCCACTTTTCCCAAACG+TGG | + | chr2_3:10404676-10404695 | Msa0277660:CDS | 50.0% |
| AGAAGAAAGGGGGGAGAGTG+AGG | - | chr2_3:10401275-10401294 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | + | chr2_3:10402035-10402054 | Msa0277660:CDS | 55.0% |
| GTAAGATTGAGGGTGAGCGC+CGG | - | chr2_3:10404048-10404067 | None:intergenic | 55.0% | |
| !! | GATTTGGTGGTGACAGGCGA+GGG | - | chr2_3:10404129-10404148 | None:intergenic | 55.0% |
| CGATTGAGGGTGATAGGCGT+GGG | - | chr2_3:10404162-10404181 | None:intergenic | 55.0% | |
| ! | TTTTGTCGTGGGTTTCGCCG+TGG | + | chr2_3:10404317-10404336 | Msa0277660:intron | 55.0% |
| CTTCGAGGCAGTCATGGAGA+AGG | + | chr2_3:10404732-10404751 | Msa0277660:CDS | 55.0% | |
| CACGCCTCCCTAAACCCATG+AGG | - | chr2_3:10402319-10402338 | None:intergenic | 60.0% | |
| !! | GTGAGCGCCGGTGAGATTGA+AGG | - | chr2_3:10404036-10404055 | None:intergenic | 60.0% |
| !! | CGATTTGGTGGTGACAGGCG+AGG | - | chr2_3:10404130-10404149 | None:intergenic | 60.0% |
| GCGATTGAGGGTGATAGGCG+TGG | - | chr2_3:10404163-10404182 | None:intergenic | 60.0% | |
| !! | TTGGTGGTGACAGGCGAGGG+TGG | - | chr2_3:10404126-10404145 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 10401181 | 10405070 | 10401181 | ID=Msa0277660;Name=Msa0277660 |
| chr2_3 | mRNA | 10401181 | 10405070 | 10401181 | ID=Msa0277660-mRNA-1;Parent=Msa0277660;Name=Msa0277660-mRNA-1;_AED=0.16;_eAED=0.16;_QI=178|0.55|0.7|1|0.55|0.9|10|17|248 |
| chr2_3 | exon | 10401181 | 10401434 | 10401181 | ID=Msa0277660-mRNA-1:exon:4608;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10401850 | 10401855 | 10401850 | ID=Msa0277660-mRNA-1:exon:4609;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10402021 | 10402169 | 10402021 | ID=Msa0277660-mRNA-1:exon:4610;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10402251 | 10402346 | 10402251 | ID=Msa0277660-mRNA-1:exon:4611;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10402445 | 10402512 | 10402445 | ID=Msa0277660-mRNA-1:exon:4612;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10403487 | 10403548 | 10403487 | ID=Msa0277660-mRNA-1:exon:4613;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10403694 | 10403699 | 10403694 | ID=Msa0277660-mRNA-1:exon:4614;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10403806 | 10403838 | 10403806 | ID=Msa0277660-mRNA-1:exon:4615;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10404594 | 10404780 | 10404594 | ID=Msa0277660-mRNA-1:exon:4616;Parent=Msa0277660-mRNA-1 |
| chr2_3 | exon | 10404990 | 10405070 | 10404990 | ID=Msa0277660-mRNA-1:exon:4617;Parent=Msa0277660-mRNA-1 |
| chr2_3 | five_prime_UTR | 10401181 | 10401358 | 10401181 | ID=Msa0277660-mRNA-1:five_prime_utr;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10401359 | 10401434 | 10401359 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10401850 | 10401855 | 10401850 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10402021 | 10402169 | 10402021 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10402251 | 10402346 | 10402251 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10402445 | 10402512 | 10402445 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10403487 | 10403548 | 10403487 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10403694 | 10403699 | 10403694 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10403806 | 10403838 | 10403806 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10404594 | 10404780 | 10404594 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | CDS | 10404990 | 10405053 | 10404990 | ID=Msa0277660-mRNA-1:cds;Parent=Msa0277660-mRNA-1 |
| chr2_3 | three_prime_UTR | 10405054 | 10405070 | 10405054 | ID=Msa0277660-mRNA-1:three_prime_utr;Parent=Msa0277660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
