Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278270 | XP_039685680.1 | 90.625 | 800 | 69 | 2 | 1 | 794 | 1 | 800 | 0.0 | 1507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278270 | sp|Q9SZL8|FRS5_ARATH | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 7.31e-68 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278270 | D3YBB9 | 78.889 | 810 | 144 | 5 | 14 | 812 | 54 | 847 | 0.0 | 1319 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0278270 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278270 | MtrunA17_Chr3g0088371 | 84.239 | 184 | 26 | 1 | 632 | 812 | 1 | 184 | 5.05e-105 | 321 |
| Msa0278270 | MtrunA17_Chr2g0324011 | 30.806 | 633 | 364 | 12 | 52 | 679 | 8 | 571 | 1.76e-100 | 323 |
| Msa0278270 | MtrunA17_Chr3g0082121 | 33.610 | 482 | 287 | 8 | 57 | 536 | 49 | 499 | 4.11e-85 | 285 |
| Msa0278270 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 608 | 741 | 529 | 655 | 2.88e-12 | 70.5 |
| Msa0278270 | MtrunA17_Chr1g0202341 | 29.338 | 634 | 367 | 15 | 50 | 676 | 50 | 609 | 1.87e-81 | 275 |
| Msa0278270 | MtrunA17_Chr8g0363841 | 28.708 | 627 | 376 | 14 | 56 | 679 | 22 | 580 | 6.67e-77 | 263 |
| Msa0278270 | MtrunA17_Chr1g0203721 | 26.309 | 783 | 464 | 22 | 13 | 762 | 18 | 720 | 1.23e-76 | 266 |
| Msa0278270 | MtrunA17_Chr5g0448761 | 26.105 | 724 | 458 | 18 | 40 | 755 | 47 | 701 | 3.04e-71 | 249 |
| Msa0278270 | MtrunA17_Chr2g0296781 | 26.883 | 677 | 411 | 17 | 55 | 722 | 1 | 602 | 2.23e-70 | 246 |
| Msa0278270 | MtrunA17_Chr6g0458391 | 27.345 | 629 | 354 | 15 | 57 | 676 | 231 | 765 | 9.98e-67 | 236 |
| Msa0278270 | MtrunA17_Chr6g0477261 | 27.684 | 531 | 334 | 11 | 196 | 722 | 7 | 491 | 2.08e-64 | 228 |
| Msa0278270 | MtrunA17_Chr5g0441581 | 26.113 | 674 | 400 | 18 | 39 | 703 | 25 | 609 | 4.21e-62 | 222 |
| Msa0278270 | MtrunA17_Chr1g0164591 | 34.062 | 320 | 196 | 4 | 147 | 464 | 1 | 307 | 1.16e-61 | 211 |
| Msa0278270 | MtrunA17_Chr2g0287651 | 25.265 | 661 | 416 | 12 | 21 | 676 | 45 | 632 | 1.26e-59 | 218 |
| Msa0278270 | MtrunA17_Chr1g0207551 | 25.243 | 721 | 441 | 19 | 22 | 732 | 9 | 641 | 3.67e-57 | 210 |
| Msa0278270 | MtrunA17_Chr2g0329031 | 25.388 | 709 | 427 | 20 | 39 | 737 | 2 | 618 | 5.82e-57 | 208 |
| Msa0278270 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 7.96e-57 | 204 |
| Msa0278270 | MtrunA17_Chr5g0440451 | 24.439 | 757 | 459 | 20 | 1 | 737 | 1 | 664 | 3.44e-55 | 205 |
| Msa0278270 | MtrunA17_Chr1g0198761 | 27.445 | 634 | 370 | 18 | 56 | 674 | 52 | 610 | 6.66e-55 | 202 |
| Msa0278270 | MtrunA17_Chr7g0258861 | 35.256 | 312 | 178 | 6 | 46 | 352 | 2 | 294 | 4.97e-54 | 189 |
| Msa0278270 | MtrunA17_Chr1g0196541 | 24.640 | 625 | 399 | 13 | 55 | 676 | 1 | 556 | 5.84e-54 | 199 |
| Msa0278270 | MtrunA17_Chr3g0080351 | 24.967 | 757 | 459 | 20 | 15 | 762 | 44 | 700 | 2.88e-53 | 199 |
| Msa0278270 | MtrunA17_Chr3g0118611 | 27.600 | 500 | 306 | 10 | 237 | 733 | 111 | 557 | 9.88e-53 | 196 |
| Msa0278270 | MtrunA17_Chr1g0203051 | 23.769 | 589 | 380 | 10 | 66 | 651 | 94 | 616 | 1.36e-51 | 191 |
| Msa0278270 | MtrunA17_Chr2g0276841 | 26.133 | 662 | 392 | 21 | 65 | 712 | 84 | 662 | 2.24e-48 | 182 |
| Msa0278270 | MtrunA17_Chr2g0287061 | 24.682 | 628 | 356 | 16 | 57 | 679 | 189 | 704 | 3.96e-48 | 183 |
| Msa0278270 | MtrunA17_Chr2g0290391 | 25.862 | 638 | 374 | 19 | 55 | 674 | 55 | 611 | 5.99e-47 | 178 |
| Msa0278270 | MtrunA17_Chr2g0291591 | 26.782 | 519 | 317 | 16 | 14 | 515 | 29 | 501 | 9.26e-44 | 167 |
| Msa0278270 | MtrunA17_Chr5g0448511 | 25.111 | 450 | 285 | 8 | 232 | 679 | 1 | 400 | 6.72e-43 | 164 |
| Msa0278270 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 9.17e-43 | 149 |
| Msa0278270 | MtrunA17_Chr2g0291581 | 24.760 | 626 | 390 | 15 | 54 | 676 | 74 | 621 | 2.64e-42 | 164 |
| Msa0278270 | MtrunA17_Chr5g0431001 | 27.578 | 446 | 288 | 12 | 56 | 489 | 66 | 488 | 2.25e-41 | 159 |
| Msa0278270 | MtrunA17_Chr2g0294841 | 25.827 | 635 | 369 | 22 | 57 | 671 | 51 | 603 | 4.38e-37 | 149 |
| Msa0278270 | MtrunA17_Chr1g0149131 | 28.448 | 116 | 77 | 2 | 349 | 462 | 1 | 112 | 9.47e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278270 | AT4G38180.1 | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 7.43e-69 | 243 |
| Msa0278270 | AT4G15090.1 | 25.240 | 729 | 463 | 17 | 66 | 787 | 66 | 719 | 4.85e-60 | 219 |
| Msa0278270 | AT4G15090.5 | 25.240 | 729 | 463 | 17 | 66 | 787 | 66 | 719 | 4.85e-60 | 219 |
| Msa0278270 | AT4G15090.3 | 25.240 | 729 | 463 | 17 | 66 | 787 | 66 | 719 | 4.85e-60 | 219 |
| Msa0278270 | AT4G15090.2 | 25.240 | 729 | 463 | 17 | 66 | 787 | 66 | 719 | 4.85e-60 | 219 |
| Msa0278270 | AT4G15090.4 | 25.240 | 729 | 463 | 17 | 66 | 787 | 66 | 719 | 4.85e-60 | 219 |
| Msa0278270 | AT3G06250.2 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 2.55e-52 | 196 |
| Msa0278270 | AT3G06250.1 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 2.55e-52 | 196 |
| Msa0278270 | AT3G06250.3 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 2.55e-52 | 196 |
| Msa0278270 | AT3G22170.2 | 24.123 | 684 | 419 | 17 | 48 | 722 | 67 | 659 | 6.62e-51 | 192 |
| Msa0278270 | AT3G22170.1 | 24.123 | 684 | 419 | 17 | 48 | 722 | 67 | 659 | 6.62e-51 | 192 |
| Msa0278270 | AT1G76320.3 | 24.929 | 706 | 431 | 20 | 57 | 756 | 3 | 615 | 9.44e-51 | 189 |
| Msa0278270 | AT1G76320.2 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 1.85e-50 | 189 |
| Msa0278270 | AT1G76320.1 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 2.06e-50 | 189 |
| Msa0278270 | AT1G76320.4 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 2.06e-50 | 189 |
| Msa0278270 | AT2G27110.3 | 24.579 | 594 | 389 | 13 | 229 | 817 | 36 | 575 | 1.61e-49 | 186 |
| Msa0278270 | AT2G27110.2 | 24.579 | 594 | 389 | 13 | 229 | 817 | 181 | 720 | 3.62e-49 | 187 |
| Msa0278270 | AT2G27110.1 | 24.579 | 594 | 389 | 13 | 229 | 817 | 181 | 720 | 3.62e-49 | 187 |
| Msa0278270 | AT5G18960.2 | 24.113 | 705 | 409 | 21 | 37 | 733 | 197 | 783 | 5.48e-47 | 180 |
| Msa0278270 | AT5G18960.1 | 24.113 | 705 | 409 | 21 | 37 | 733 | 197 | 783 | 5.48e-47 | 180 |
| Msa0278270 | AT1G10240.2 | 24.719 | 623 | 375 | 20 | 65 | 673 | 62 | 604 | 4.23e-44 | 170 |
| Msa0278270 | AT1G10240.1 | 24.719 | 623 | 375 | 20 | 65 | 673 | 62 | 604 | 4.23e-44 | 170 |
| Msa0278270 | AT4G38170.1 | 23.944 | 497 | 299 | 14 | 251 | 733 | 24 | 455 | 4.16e-43 | 165 |
| Msa0278270 | AT5G28530.1 | 24.647 | 637 | 385 | 18 | 56 | 674 | 60 | 619 | 1.76e-41 | 162 |
| Msa0278270 | AT1G80010.1 | 24.961 | 637 | 385 | 22 | 57 | 676 | 101 | 661 | 4.99e-41 | 161 |
| Msa0278270 | AT2G32250.5 | 23.816 | 718 | 413 | 21 | 24 | 732 | 13 | 605 | 6.20e-41 | 161 |
| Msa0278270 | AT2G32250.2 | 23.803 | 710 | 407 | 21 | 24 | 724 | 13 | 597 | 8.73e-41 | 161 |
| Msa0278270 | AT2G32250.4 | 23.803 | 710 | 407 | 21 | 24 | 724 | 13 | 597 | 8.73e-41 | 161 |
| Msa0278270 | AT2G32250.6 | 23.803 | 710 | 407 | 21 | 24 | 724 | 13 | 597 | 1.11e-40 | 161 |
| Msa0278270 | AT2G32250.1 | 23.803 | 710 | 407 | 21 | 24 | 724 | 13 | 597 | 1.11e-40 | 161 |
| Msa0278270 | AT2G32250.3 | 23.803 | 710 | 407 | 21 | 24 | 724 | 13 | 597 | 1.11e-40 | 161 |
| Msa0278270 | AT5G28530.3 | 24.490 | 637 | 382 | 19 | 56 | 674 | 60 | 615 | 1.16e-40 | 160 |
| Msa0278270 | AT5G28530.2 | 24.490 | 637 | 382 | 19 | 56 | 674 | 60 | 615 | 1.16e-40 | 160 |
| Msa0278270 | AT2G32250.8 | 23.942 | 685 | 389 | 20 | 57 | 732 | 3 | 564 | 2.84e-40 | 159 |
| Msa0278270 | AT2G32250.7 | 23.942 | 685 | 389 | 20 | 57 | 732 | 3 | 564 | 3.26e-40 | 159 |
| Msa0278270 | AT1G52520.1 | 23.077 | 624 | 400 | 17 | 57 | 676 | 91 | 638 | 1.42e-36 | 147 |
| Msa0278270 | AT4G19990.3 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.76e-31 | 132 |
| Msa0278270 | AT4G19990.3 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.21e-11 | 67.4 |
| Msa0278270 | AT4G19990.4 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.76e-31 | 132 |
| Msa0278270 | AT4G19990.4 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.21e-11 | 67.4 |
| Msa0278270 | AT4G19990.5 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.91e-31 | 132 |
| Msa0278270 | AT4G19990.5 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.47e-11 | 67.0 |
| Msa0278270 | AT4G19990.7 | 24.439 | 446 | 288 | 10 | 57 | 499 | 41 | 440 | 2.06e-31 | 132 |
| Msa0278270 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 607 | 703 | 511 | 597 | 4.41e-11 | 67.0 |
| Msa0278270 | AT4G19990.6 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 2.37e-31 | 132 |
| Msa0278270 | AT4G19990.6 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.21e-11 | 67.4 |
| Msa0278270 | AT4G19990.2 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 2.37e-31 | 132 |
| Msa0278270 | AT4G19990.2 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.21e-11 | 67.4 |
| Msa0278270 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 235 | 499 | 106 | 369 | 6.27e-30 | 127 |
| Msa0278270 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 607 | 703 | 440 | 526 | 4.02e-11 | 67.4 |
| Msa0278270 | AT5G28530.4 | 22.488 | 627 | 348 | 21 | 56 | 674 | 60 | 556 | 9.02e-23 | 104 |
| Msa0278270 | AT5G28530.5 | 22.329 | 627 | 345 | 22 | 56 | 674 | 60 | 552 | 4.42e-22 | 102 |
Find 117 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 2_3:+11243601 | Msa0278270:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 2_3:-11244421 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 2_3:+11243011 | Msa0278270:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_3:+11243559 | Msa0278270:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 2_3:-11243138 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 2_3:-11244415 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 2_3:-11241964 | None:intergenic |
| ATGTATTGATGATTATATTT+TGG | 0.303619 | 2_3:+11244659 | Msa0278270:three_prime_UTR |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 2_3:-11243899 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 2_3:-11242155 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 2_3:+11243850 | Msa0278270:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 2_3:+11242471 | Msa0278270:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 2_3:+11244019 | Msa0278270:CDS |
| GAAGGCCTACCTTAGACTTT+AGG | 0.334313 | 2_3:+11243384 | Msa0278270:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 2_3:-11243415 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_3:-11242521 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 2_3:-11243024 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 2_3:+11244259 | Msa0278270:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 2_3:-11244483 | None:intergenic |
| GACAAGCCACCTAAAGTCTA+AGG | 0.387327 | 2_3:-11243393 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_3:+11242528 | Msa0278270:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_3:+11242520 | Msa0278270:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 2_3:+11242230 | Msa0278270:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_3:-11244397 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 2_3:+11243733 | Msa0278270:CDS |
| CTTTCTAAAGGTATTCATAC+AGG | 0.402132 | 2_3:+11244304 | Msa0278270:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 2_3:+11243975 | Msa0278270:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 2_3:+11242236 | Msa0278270:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 2_3:+11242243 | Msa0278270:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 2_3:+11241916 | Msa0278270:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 2_3:-11243197 | None:intergenic |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 2_3:+11244358 | Msa0278270:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 2_3:+11242168 | Msa0278270:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 2_3:-11244167 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 2_3:+11244292 | Msa0278270:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 2_3:-11241753 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 2_3:-11241754 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 2_3:-11244389 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_3:+11242033 | Msa0278270:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 2_3:+11243433 | Msa0278270:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 2_3:+11242085 | Msa0278270:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 2_3:+11241628 | Msa0278270:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 2_3:+11243699 | Msa0278270:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 2_3:+11242198 | Msa0278270:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 2_3:-11243653 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 2_3:-11241976 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 2_3:+11242231 | Msa0278270:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 2_3:+11241953 | Msa0278270:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 2_3:-11244076 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 2_3:+11244473 | Msa0278270:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 2_3:+11243912 | Msa0278270:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 2_3:+11243432 | Msa0278270:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 2_3:-11242282 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 2_3:-11243735 | None:intergenic |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 2_3:-11243898 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 2_3:+11244058 | Msa0278270:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 2_3:+11243749 | Msa0278270:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 2_3:-11244143 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 2_3:-11244327 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 2_3:+11244359 | Msa0278270:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_3:+11243573 | Msa0278270:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 2_3:+11241752 | Msa0278270:CDS |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 2_3:-11243695 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 2_3:-11244388 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 2_3:-11242027 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 2_3:+11242050 | Msa0278270:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 2_3:+11243592 | Msa0278270:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 2_3:+11241882 | Msa0278270:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 2_3:-11242138 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 2_3:-11243694 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 2_3:-11241713 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 2_3:+11241820 | Msa0278270:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 2_3:+11241927 | Msa0278270:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 2_3:+11242092 | Msa0278270:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 2_3:-11243730 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 2_3:+11243223 | Msa0278270:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 2_3:-11242126 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 2_3:-11241752 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 2_3:-11241714 | None:intergenic |
| GGCCTACCTTAGACTTTAGG+TGG | 0.541554 | 2_3:+11243387 | Msa0278270:CDS |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 2_3:+11243750 | Msa0278270:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 2_3:-11243536 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_3:+11241928 | Msa0278270:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 2_3:+11242246 | Msa0278270:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 2_3:-11243169 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 2_3:+11244022 | Msa0278270:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 2_3:+11243976 | Msa0278270:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 2_3:+11244343 | Msa0278270:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 2_3:-11243654 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 2_3:+11244516 | Msa0278270:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 2_3:-11244328 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 2_3:-11243897 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 2_3:+11244133 | Msa0278270:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 2_3:+11243651 | Msa0278270:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 2_3:+11243420 | Msa0278270:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 2_3:+11243827 | Msa0278270:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 2_3:+11242086 | Msa0278270:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 2_3:+11241673 | Msa0278270:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 2_3:-11243851 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 2_3:+11243736 | Msa0278270:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 2_3:+11242237 | Msa0278270:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 2_3:+11241975 | Msa0278270:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 2_3:+11243828 | Msa0278270:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 2_3:-11241991 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 2_3:+11244360 | Msa0278270:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_3:+11243574 | Msa0278270:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 2_3:+11244517 | Msa0278270:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 2_3:-11243149 | None:intergenic |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 2_3:-11244118 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 2_3:+11243977 | Msa0278270:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 2_3:-11243541 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 2_3:-11244392 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 2_3:-11243693 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 2_3:-11241712 | None:intergenic |
| AGCCACCTAAAGTCTAAGGT+AGG | 0.690144 | 2_3:-11243389 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 2_3:-11243675 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 2_3:+11243151 | Msa0278270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTGATATGATTTAT+TGG | + | chr2_3:11244606-11244625 | Msa0278270:three_prime_UTR | 10.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr2_3:11243292-11243311 | Msa0278270:CDS | 15.0% |
| !!! | ATTGATTGTTTTTATAAGTT+TGG | + | chr2_3:11244546-11244565 | Msa0278270:exon | 15.0% |
| !!! | TTTTATAAGTTTGGTTTTTT+AGG | + | chr2_3:11244555-11244574 | Msa0278270:three_prime_UTR | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr2_3:11241799-11241818 | Msa0278270:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr2_3:11242085-11242104 | Msa0278270:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr2_3:11242086-11242105 | Msa0278270:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr2_3:11242399-11242418 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr2_3:11242589-11242608 | Msa0278270:intron | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr2_3:11242819-11242838 | Msa0278270:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr2_3:11242882-11242901 | Msa0278270:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr2_3:11243333-11243352 | Msa0278270:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr2_3:11243334-11243353 | Msa0278270:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr2_3:11243362-11243381 | Msa0278270:CDS | 20.0% |
| !! | CTTATAAAAACAATCAATCA+GGG | - | chr2_3:11244544-11244563 | None:intergenic | 20.0% |
| !! | ACTTATAAAAACAATCAATC+AGG | - | chr2_3:11244545-11244564 | None:intergenic | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr2_3:11241833-11241852 | Msa0278270:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr2_3:11241882-11241901 | Msa0278270:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr2_3:11242433-11242452 | Msa0278270:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr2_3:11242471-11242490 | Msa0278270:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr2_3:11242520-11242539 | Msa0278270:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr2_3:11242546-11242565 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr2_3:11242665-11242684 | Msa0278270:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr2_3:11242689-11242708 | Msa0278270:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr2_3:11242690-11242709 | Msa0278270:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr2_3:11242743-11242762 | Msa0278270:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr2_3:11242767-11242786 | Msa0278270:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr2_3:11242982-11243001 | Msa0278270:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr2_3:11243027-11243046 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr2_3:11243366-11243385 | Msa0278270:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr2_3:11243559-11243578 | Msa0278270:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr2_3:11243733-11243752 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr2_3:11243733-11243752 | Msa0278270:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr2_3:11243780-11243799 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr2_3:11243793-11243812 | Msa0278270:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | - | chr2_3:11244241-11244260 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr2_3:11244244-11244263 | Msa0278270:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr2_3:11244418-11244437 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr2_3:11244452-11244471 | Msa0278270:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | - | chr2_3:11241756-11241775 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr2_3:11241757-11241776 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr2_3:11241820-11241839 | Msa0278270:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr2_3:11241916-11241935 | Msa0278270:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr2_3:11241927-11241946 | Msa0278270:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr2_3:11241928-11241947 | Msa0278270:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr2_3:11241953-11241972 | Msa0278270:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr2_3:11242092-11242111 | Msa0278270:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr2_3:11242158-11242177 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr2_3:11242198-11242217 | Msa0278270:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr2_3:11242231-11242250 | Msa0278270:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr2_3:11242285-11242304 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr2_3:11242524-11242543 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr2_3:11242528-11242547 | Msa0278270:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr2_3:11242552-11242571 | Msa0278270:intron | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | + | chr2_3:11242666-11242685 | Msa0278270:intron | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr2_3:11242697-11242716 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr2_3:11242731-11242750 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr2_3:11243011-11243030 | Msa0278270:intron | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | - | chr2_3:11243200-11243219 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr2_3:11243248-11243267 | Msa0278270:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr2_3:11243696-11243715 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr2_3:11243697-11243716 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr2_3:11243698-11243717 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr2_3:11243738-11243757 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr2_3:11243736-11243755 | Msa0278270:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr2_3:11243827-11243846 | Msa0278270:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr2_3:11243900-11243919 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr2_3:11243901-11243920 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr2_3:11243912-11243931 | Msa0278270:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr2_3:11244080-11244099 | Msa0278270:CDS | 30.0% |
| !! | CTTTCTAAAGGTATTCATAC+AGG | + | chr2_3:11244304-11244323 | Msa0278270:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr2_3:11244400-11244419 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | - | chr2_3:11244486-11244505 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | + | chr2_3:11241628-11241647 | Msa0278270:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr2_3:11241755-11241774 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr2_3:11241994-11242013 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr2_3:11242011-11242030 | Msa0278270:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr2_3:11242016-11242035 | Msa0278270:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr2_3:11242017-11242036 | Msa0278270:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr2_3:11242050-11242069 | Msa0278270:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr2_3:11242129-11242148 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr2_3:11242168-11242187 | Msa0278270:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr2_3:11242230-11242249 | Msa0278270:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | chr2_3:11242237-11242256 | Msa0278270:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr2_3:11242317-11242336 | Msa0278270:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr2_3:11242320-11242339 | Msa0278270:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr2_3:11242388-11242407 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr2_3:11242389-11242408 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr2_3:11242441-11242460 | Msa0278270:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | - | chr2_3:11242650-11242669 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | chr2_3:11242853-11242872 | Msa0278270:intron | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr2_3:11243044-11243063 | Msa0278270:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr2_3:11243141-11243160 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr2_3:11243191-11243210 | Msa0278270:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr2_3:11243203-11243222 | Msa0278270:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr2_3:11243204-11243223 | Msa0278270:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr2_3:11243216-11243235 | Msa0278270:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr2_3:11243503-11243522 | Msa0278270:CDS | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr2_3:11243544-11243563 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr2_3:11243573-11243592 | Msa0278270:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr2_3:11243574-11243593 | Msa0278270:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr2_3:11243699-11243718 | Msa0278270:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr2_3:11243828-11243847 | Msa0278270:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | - | chr2_3:11243854-11243873 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr2_3:11243902-11243921 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr2_3:11243976-11243995 | Msa0278270:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr2_3:11244009-11244028 | Msa0278270:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr2_3:11244019-11244038 | Msa0278270:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr2_3:11244058-11244077 | Msa0278270:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr2_3:11244079-11244098 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | - | chr2_3:11244121-11244140 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | + | chr2_3:11244267-11244286 | Msa0278270:CDS | 35.0% | |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr2_3:11244337-11244356 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | - | chr2_3:11244395-11244414 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | - | chr2_3:11244424-11244443 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | + | chr2_3:11244473-11244492 | Msa0278270:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | + | chr2_3:11244516-11244535 | Msa0278270:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | + | chr2_3:11244517-11244536 | Msa0278270:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | - | chr2_3:11241715-11241734 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr2_3:11241716-11241735 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr2_3:11241717-11241736 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr2_3:11241752-11241771 | Msa0278270:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | chr2_3:11242236-11242255 | Msa0278270:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr2_3:11242268-11242287 | Msa0278270:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr2_3:11242630-11242649 | Msa0278270:intron | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr2_3:11242642-11242661 | Msa0278270:intron | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr2_3:11242713-11242732 | Msa0278270:intron | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | - | chr2_3:11242787-11242806 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr2_3:11243087-11243106 | Msa0278270:CDS | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr2_3:11243152-11243171 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr2_3:11243151-11243170 | Msa0278270:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr2_3:11243418-11243437 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr2_3:11243420-11243439 | Msa0278270:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr2_3:11243433-11243452 | Msa0278270:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr2_3:11243455-11243474 | Msa0278270:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr2_3:11243601-11243620 | Msa0278270:CDS | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr2_3:11243678-11243697 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr2_3:11243749-11243768 | Msa0278270:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr2_3:11243750-11243769 | Msa0278270:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr2_3:11243850-11243869 | Msa0278270:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr2_3:11243975-11243994 | Msa0278270:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr2_3:11243977-11243996 | Msa0278270:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr2_3:11244022-11244041 | Msa0278270:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | + | chr2_3:11244133-11244152 | Msa0278270:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | - | chr2_3:11244170-11244189 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr2_3:11244292-11244311 | Msa0278270:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | - | chr2_3:11244331-11244350 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | + | chr2_3:11244343-11244362 | Msa0278270:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr2_3:11241673-11241692 | Msa0278270:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr2_3:11241967-11241986 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr2_3:11242021-11242040 | Msa0278270:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr2_3:11242030-11242049 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr2_3:11242033-11242052 | Msa0278270:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | - | chr2_3:11242141-11242160 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr2_3:11242324-11242343 | Msa0278270:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr2_3:11243172-11243191 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr2_3:11243212-11243231 | None:intergenic | 45.0% | |
| GAAGGCCTACCTTAGACTTT+AGG | + | chr2_3:11243384-11243403 | Msa0278270:CDS | 45.0% | |
| ! | AGCCACCTAAAGTCTAAGGT+AGG | - | chr2_3:11243392-11243411 | None:intergenic | 45.0% |
| GACAAGCCACCTAAAGTCTA+AGG | - | chr2_3:11243396-11243415 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr2_3:11243432-11243451 | Msa0278270:CDS | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr2_3:11243539-11243558 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr2_3:11243592-11243611 | Msa0278270:CDS | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | - | chr2_3:11244146-11244165 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | + | chr2_3:11244273-11244292 | Msa0278270:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | - | chr2_3:11244330-11244349 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | + | chr2_3:11244359-11244378 | Msa0278270:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | + | chr2_3:11244360-11244379 | Msa0278270:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr2_3:11244391-11244410 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr2_3:11244392-11244411 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr2_3:11241979-11241998 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | + | chr2_3:11242243-11242262 | Msa0278270:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr2_3:11243223-11243242 | Msa0278270:CDS | 50.0% |
| GGCCTACCTTAGACTTTAGG+TGG | + | chr2_3:11243387-11243406 | Msa0278270:CDS | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr2_3:11243651-11243670 | Msa0278270:CDS | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | + | chr2_3:11244358-11244377 | Msa0278270:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | + | chr2_3:11241975-11241994 | Msa0278270:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | chr2_3:11242246-11242265 | Msa0278270:CDS | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | - | chr2_3:11243656-11243675 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr2_3:11244259-11244278 | Msa0278270:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr2_3:11243657-11243676 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 11241619 | 11244681 | 11241619 | ID=Msa0278270;Name=Msa0278270 |
| chr2_3 | mRNA | 11241619 | 11244681 | 11241619 | ID=Msa0278270-mRNA-1;Parent=Msa0278270;Name=Msa0278270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|135|818 |
| chr2_3 | exon | 11241619 | 11242549 | 11241619 | ID=Msa0278270-mRNA-1:exon:4954;Parent=Msa0278270-mRNA-1 |
| chr2_3 | exon | 11243021 | 11244681 | 11243021 | ID=Msa0278270-mRNA-1:exon:4955;Parent=Msa0278270-mRNA-1 |
| chr2_3 | CDS | 11241619 | 11242549 | 11241619 | ID=Msa0278270-mRNA-1:cds;Parent=Msa0278270-mRNA-1 |
| chr2_3 | CDS | 11243021 | 11244546 | 11243021 | ID=Msa0278270-mRNA-1:cds;Parent=Msa0278270-mRNA-1 |
| chr2_3 | three_prime_UTR | 11244547 | 11244681 | 11244547 | ID=Msa0278270-mRNA-1:three_prime_utr;Parent=Msa0278270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
