AlfalfaGEDB | Msa0279360

M. sativa cultivar zhongmu-4 / Msa0279360

KEGG: -
GO: -
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279360	AES64821.1	89.600	125	13	0	4	128	36	160	7.97e-74	227

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279360	sp\|Q6ZAR0\|ROC1_ORYSJ	36.364	110	61	2	1	101	121	230	1.27e-13	69.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0279360	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279360	MtrunA17_Chr2g0292781	81.818	88	13	1	41	128	2	86	2.24e-44	139
Msa0279360	MtrunA17_Chr4g0024351	31.884	138	81	4	1	125	75	212	2.90e-13	65.1
Msa0279360	MtrunA17_Chr2g0322731	32.540	126	73	3	1	114	115	240	7.46e-13	63.9
Msa0279360	MtrunA17_Chr2g0331581	32.432	111	64	3	1	100	154	264	5.09e-12	61.6
Msa0279360	MtrunA17_Chr1g0203671	29.412	136	82	4	1	123	110	244	5.90e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279360	AT1G05230.8	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.4	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.9	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.10	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.7	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.11	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.2	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.6	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.5	34.545	110	63	2	1	101	79	188	8.68e-13	64.3
Msa0279360	AT1G05230.1	34.545	110	63	2	1	101	79	188	8.68e-13	64.3

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Find 23 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAATCCAAGCTACT+TGG	0.431354	2_3:-13200502	Msa0279360:CDS
AAATGAACTTCTGAAAGAAA+AGG	0.522170	2_3:-13200658	Msa0279360:intron
AAATTGAATCCAAGCTACTT+GGG	0.627395	2_3:-13200501	Msa0279360:CDS
AACCACCAGTTCACTTGTTT+TGG	0.280631	2_3:+13200955	None:intergenic
AACGTGAATCACGGCATGCT+TGG	0.497561	2_3:+13200700	None:intergenic
AGCCAAAACAAGTGAACTGG+TGG	0.610770	2_3:-13200957	Msa0279360:CDS
AGCTGAAATTCAAATGCTTT+TGG	0.265458	2_3:-13200763	Msa0279360:CDS
AGTGAAATAGCCGAAGAGCT+TGG	0.563271	2_3:-13200985	Msa0279360:CDS
ATACAAAAGAGCTCAAGTTA+AGG	0.476145	2_3:-13200929	Msa0279360:intron
ATTCACGTTTGAAACAACTT+CGG	0.629375	2_3:-13200686	Msa0279360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAAACTTGATCTTTGAAC+CGG	+	chr2_3:13200442-13200461	None:intergenic	30.0%
CTCGTGTGATTATATATAAG+AGG	+	chr2_3:13200555-13200574	None:intergenic	30.0%
TAAGTGATATTTAGTAGAGG+AGG	-	chr2_3:13200581-13200600	Msa0279360:intron	30.0%
AAATACATTCATGCAGACAA+TGG	+	chr2_3:13201093-13201112	None:intergenic	30.0%
TTTGGATAACGATTTGCAAT+TGG	-	chr2_3:13201217-13201236	Msa0279360:intron	30.0%
TATTGCAAGACCAATTTGAA+TGG	+	chr2_3:13201880-13201899	None:intergenic	30.0%
ATACAAAAGAGCTCAAGTTA+AGG	-	chr2_3:13202036-13202055	Msa0279360:intron	30.0%
GGCATGTAAAAAGAATTGAA+TGG	+	chr2_3:13202096-13202115	None:intergenic	30.0%
AAAATTGAATCCAAGCTACT+TGG	-	chr2_3:13202463-13202482	Msa0279360:intron	30.0%
AAATTGAATCCAAGCTACTT+GGG	-	chr2_3:13202464-13202483	Msa0279360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	13200434	13202553	13200434	ID=Msa0279360;Name=Msa0279360
chr2_3	mRNA	13200434	13202553	13200434	ID=Msa0279360-mRNA-1;Parent=Msa0279360;Name=Msa0279360-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|0.75\|0.66\|0.5\|4\|0\|128
chr2_3	exon	13202546	13202553	13202546	ID=Msa0279360-mRNA-1:exon:5694;Parent=Msa0279360-mRNA-1
chr2_3	exon	13200930	13201047	13200930	ID=Msa0279360-mRNA-1:exon:5693;Parent=Msa0279360-mRNA-1
chr2_3	exon	13200659	13200820	13200659	ID=Msa0279360-mRNA-1:exon:5692;Parent=Msa0279360-mRNA-1
chr2_3	exon	13200434	13200529	13200434	ID=Msa0279360-mRNA-1:exon:5691;Parent=Msa0279360-mRNA-1
chr2_3	CDS	13202546	13202553	13202546	ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1
chr2_3	CDS	13200930	13201047	13200930	ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1
chr2_3	CDS	13200659	13200820	13200659	ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1
chr2_3	CDS	13200434	13200529	13200434	ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1

Gene Sequence

>Msa0279360

ATGACCCGAATATTTCAAACTCTCAAATATCCAACTCATAAGCAAAAAAGTGAAATAGCCGAAGAGCTTGGTCTTGAGCCAAAACAAGTGAACTGGTGGTTTACATACAAAAGAGCTCAAGTTAAGAATGCTACTCAAAAGGAAGTTAACGCTGCGCTTCGAGCTGAAATTCAAATGCTTTTGGAAGCGAAAAGGGAAATGGAGAGACAAAATAGTGTATCTTGCCAAGCATGCCGTGATTCACGTTTGAAACAACTTCGGCTTGAAAATGAACTTCTGAAAGAAAAGCTGTCAAAATTGAATCCAAGCTACTTGGGAGAAGAGGAACTATCACTGGAGTTGAAGTTAGGTCTTCCCGAAAGATCATCAGATGGAACCTATCTT

Protein sequence

>Msa0279360

MTRIFQTLKYPTHKQKSEIAEELGLEPKQVNWWFTYKRAQVKNATQKEVNAALRAEIQMLLEAKREMERQNSVSCQACRDSRLKQLRLENELLKEKLSKLNPSYLGEEELSLELKLGLPERSSDGTYL