Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279360 | AES64821.1 | 89.600 | 125 | 13 | 0 | 4 | 128 | 36 | 160 | 7.97e-74 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279360 | sp|Q6ZAR0|ROC1_ORYSJ | 36.364 | 110 | 61 | 2 | 1 | 101 | 121 | 230 | 1.27e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0279360 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279360 | MtrunA17_Chr2g0292781 | 81.818 | 88 | 13 | 1 | 41 | 128 | 2 | 86 | 2.24e-44 | 139 |
| Msa0279360 | MtrunA17_Chr4g0024351 | 31.884 | 138 | 81 | 4 | 1 | 125 | 75 | 212 | 2.90e-13 | 65.1 |
| Msa0279360 | MtrunA17_Chr2g0322731 | 32.540 | 126 | 73 | 3 | 1 | 114 | 115 | 240 | 7.46e-13 | 63.9 |
| Msa0279360 | MtrunA17_Chr2g0331581 | 32.432 | 111 | 64 | 3 | 1 | 100 | 154 | 264 | 5.09e-12 | 61.6 |
| Msa0279360 | MtrunA17_Chr1g0203671 | 29.412 | 136 | 82 | 4 | 1 | 123 | 110 | 244 | 5.90e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279360 | AT1G05230.8 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.4 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.9 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.10 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.7 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.11 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.2 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.6 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.5 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.1 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 8.68e-13 | 64.3 |
| Msa0279360 | AT1G05230.3 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 9.20e-13 | 63.9 |
| Msa0279360 | AT1G79840.5 | 35.922 | 103 | 62 | 2 | 1 | 100 | 116 | 217 | 1.49e-12 | 63.5 |
| Msa0279360 | AT1G79840.1 | 35.922 | 103 | 62 | 2 | 1 | 100 | 116 | 217 | 2.06e-12 | 63.2 |
| Msa0279360 | AT1G79840.4 | 35.922 | 103 | 62 | 2 | 1 | 100 | 116 | 217 | 2.58e-12 | 62.8 |
| Msa0279360 | AT1G79840.3 | 35.922 | 103 | 62 | 2 | 1 | 100 | 58 | 159 | 2.58e-12 | 62.8 |
| Msa0279360 | AT1G79840.6 | 35.922 | 103 | 62 | 2 | 1 | 100 | 58 | 159 | 2.58e-12 | 62.8 |
| Msa0279360 | AT1G79840.2 | 35.922 | 103 | 62 | 2 | 1 | 100 | 145 | 246 | 2.66e-12 | 62.8 |
| Msa0279360 | AT1G05230.12 | 34.545 | 110 | 63 | 2 | 1 | 101 | 79 | 188 | 2.94e-12 | 62.8 |
| Msa0279360 | AT5G17320.1 | 35.135 | 111 | 61 | 4 | 5 | 105 | 45 | 154 | 7.39e-11 | 58.5 |
Find 23 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGAAATTCAAATGCTTT+TGG | 0.265458 | 2_3:-13200763 | Msa0279360:CDS |
| GTTCCATCTGATGATCTTTC+GGG | 0.269210 | 2_3:+13200441 | None:intergenic |
| AACCACCAGTTCACTTGTTT+TGG | 0.280631 | 2_3:+13200955 | None:intergenic |
| GGTTCCATCTGATGATCTTT+CGG | 0.329348 | 2_3:+13200440 | None:intergenic |
| TCCTCTTCTCCCAAGTAGCT+TGG | 0.386243 | 2_3:+13200492 | None:intergenic |
| AAAATTGAATCCAAGCTACT+TGG | 0.431354 | 2_3:-13200502 | Msa0279360:CDS |
| CTATCACTGGAGTTGAAGTT+AGG | 0.433891 | 2_3:-13200468 | Msa0279360:CDS |
| TTTGGAAGCGAAAAGGGAAA+TGG | 0.438892 | 2_3:-13200745 | Msa0279360:CDS |
| ATACAAAAGAGCTCAAGTTA+AGG | 0.476145 | 2_3:-13200929 | Msa0279360:intron |
| TTGAGCCAAAACAAGTGAAC+TGG | 0.483755 | 2_3:-13200960 | Msa0279360:CDS |
| TGGCTCAAGACCAAGCTCTT+CGG | 0.488016 | 2_3:+13200975 | None:intergenic |
| AACGTGAATCACGGCATGCT+TGG | 0.497561 | 2_3:+13200700 | None:intergenic |
| TCTCAAGAATGCTACTCAAA+AGG | 0.498418 | 2_3:-13200805 | Msa0279360:intron |
| AAATGAACTTCTGAAAGAAA+AGG | 0.522170 | 2_3:-13200658 | Msa0279360:intron |
| GGGAGAAGAGGAACTATCAC+TGG | 0.540737 | 2_3:-13200481 | Msa0279360:CDS |
| TCCAAGCTACTTGGGAGAAG+AGG | 0.544024 | 2_3:-13200493 | Msa0279360:CDS |
| AGTGAAATAGCCGAAGAGCT+TGG | 0.563271 | 2_3:-13200985 | Msa0279360:CDS |
| GTTGTTTCAAACGTGAATCA+CGG | 0.584844 | 2_3:+13200691 | None:intergenic |
| CAGGACGTCTAATGATGACC+CGG | 0.598833 | 2_3:-13202545 | None:intergenic |
| AGCCAAAACAAGTGAACTGG+TGG | 0.610770 | 2_3:-13200957 | Msa0279360:CDS |
| AAATTGAATCCAAGCTACTT+GGG | 0.627395 | 2_3:-13200501 | Msa0279360:CDS |
| ATTCACGTTTGAAACAACTT+CGG | 0.629375 | 2_3:-13200686 | Msa0279360:CDS |
| CTTCCCGAAAGATCATCAGA+TGG | 0.663295 | 2_3:-13200444 | Msa0279360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATTAAAAAAAAT+GGG | + | chr2_3:13200502-13200521 | None:intergenic | 0.0% |
| !!! | AATTTTTTAATTAAAAAAAA+TGG | + | chr2_3:13200503-13200522 | None:intergenic | 0.0% |
| !!! | ATTTTTTAATTAAAAAAAAT+GGG | + | chr2_3:13200502-13200521 | None:intergenic | 0.0% |
| !!! | AATTTTTTAATTAAAAAAAA+TGG | + | chr2_3:13200503-13200522 | None:intergenic | 0.0% |
| !!! | TTTACAATTGATTTTTTTTT+TGG | - | chr2_3:13201199-13201218 | Msa0279360:intron | 10.0% |
| !!! | TTTACAATTGATTTTTTTTT+TGG | - | chr2_3:13201199-13201218 | Msa0279360:intron | 10.0% |
| !! | TAATACAAATTACAAAAAAG+GGG | + | chr2_3:13200644-13200663 | None:intergenic | 15.0% |
| !! | GTAATACAAATTACAAAAAA+GGG | + | chr2_3:13200645-13200664 | None:intergenic | 15.0% |
| !! | ACGATTAAATTTATAAAGTT+TGG | - | chr2_3:13200913-13200932 | Msa0279360:intron | 15.0% |
| !!! | AATCTCCAAAAATATTTTTT+TGG | - | chr2_3:13201266-13201285 | Msa0279360:intron | 15.0% |
| !!! | GTATACCAAAAAAATATTTT+TGG | + | chr2_3:13201274-13201293 | None:intergenic | 15.0% |
| !! | ATTAATGATAATATAAGTAC+CGG | - | chr2_3:13201777-13201796 | Msa0279360:intron | 15.0% |
| !! | TAACAAACAAAAATACAATT+AGG | + | chr2_3:13201913-13201932 | None:intergenic | 15.0% |
| !!! | AAGGTAACATATATTTTTTT+TGG | - | chr2_3:13202055-13202074 | Msa0279360:intron | 15.0% |
| !! | TAATACAAATTACAAAAAAG+GGG | + | chr2_3:13200644-13200663 | None:intergenic | 15.0% |
| !! | GTAATACAAATTACAAAAAA+GGG | + | chr2_3:13200645-13200664 | None:intergenic | 15.0% |
| !! | ACGATTAAATTTATAAAGTT+TGG | - | chr2_3:13200913-13200932 | Msa0279360:intron | 15.0% |
| !!! | AATCTCCAAAAATATTTTTT+TGG | - | chr2_3:13201266-13201285 | Msa0279360:intron | 15.0% |
| !!! | GTATACCAAAAAAATATTTT+TGG | + | chr2_3:13201274-13201293 | None:intergenic | 15.0% |
| !! | ATTAATGATAATATAAGTAC+CGG | - | chr2_3:13201777-13201796 | Msa0279360:intron | 15.0% |
| !! | TAACAAACAAAAATACAATT+AGG | + | chr2_3:13201913-13201932 | None:intergenic | 15.0% |
| !!! | AAGGTAACATATATTTTTTT+TGG | - | chr2_3:13202055-13202074 | Msa0279360:intron | 15.0% |
| !! | CGTAATACAAATTACAAAAA+AGG | + | chr2_3:13200646-13200665 | None:intergenic | 20.0% |
| !! | AACAAATTTCATCAATTTGT+AGG | - | chr2_3:13200685-13200704 | Msa0279360:CDS | 20.0% |
| !! | TTTGTAGGTTAATTGAAAAA+TGG | - | chr2_3:13200700-13200719 | Msa0279360:CDS | 20.0% |
| !! | TCTAAAAAAAATCATATGCA+AGG | + | chr2_3:13200819-13200838 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTTGATAGATTT+TGG | - | chr2_3:13200855-13200874 | Msa0279360:intron | 20.0% |
| !! | ACTTTATAAATTTAATCGTC+CGG | + | chr2_3:13200912-13200931 | None:intergenic | 20.0% |
| !! | AAATCAAAATCTCCTTATTA+CGG | - | chr2_3:13200955-13200974 | Msa0279360:CDS | 20.0% |
| !!! | ATTACTCTATAGTTTTTTGA+AGG | - | chr2_3:13201065-13201084 | Msa0279360:intron | 20.0% |
| !!! | GTAACGATCTTTTTATTATT+AGG | - | chr2_3:13201460-13201479 | Msa0279360:intron | 20.0% |
| !!! | AAGAATATCAATAGTCTTTT+GGG | + | chr2_3:13201516-13201535 | None:intergenic | 20.0% |
| !!! | TAAGAATATCAATAGTCTTT+TGG | + | chr2_3:13201517-13201536 | None:intergenic | 20.0% |
| !! | TTAAATCCATAAAAGTTAGA+TGG | - | chr2_3:13201621-13201640 | Msa0279360:intron | 20.0% |
| !!! | AATAAACCATCTAACTTTTA+TGG | + | chr2_3:13201630-13201649 | None:intergenic | 20.0% |
| !! | ATCAACTTATTTACGTTAAA+GGG | + | chr2_3:13201714-13201733 | None:intergenic | 20.0% |
| !! | TTAACATTTATCGTTTATGT+CGG | + | chr2_3:13201747-13201766 | None:intergenic | 20.0% |
| !! | TATATCTTTCCTAATTAATC+CGG | + | chr2_3:13201799-13201818 | None:intergenic | 20.0% |
| !! | TAGTATGTTATATCAATTAG+TGG | + | chr2_3:13202117-13202136 | None:intergenic | 20.0% |
| !! | CGTAATACAAATTACAAAAA+AGG | + | chr2_3:13200646-13200665 | None:intergenic | 20.0% |
| !! | AACAAATTTCATCAATTTGT+AGG | - | chr2_3:13200685-13200704 | Msa0279360:CDS | 20.0% |
| !! | TTTGTAGGTTAATTGAAAAA+TGG | - | chr2_3:13200700-13200719 | Msa0279360:CDS | 20.0% |
| !! | TCTAAAAAAAATCATATGCA+AGG | + | chr2_3:13200819-13200838 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTTGATAGATTT+TGG | - | chr2_3:13200855-13200874 | Msa0279360:intron | 20.0% |
| !! | ACTTTATAAATTTAATCGTC+CGG | + | chr2_3:13200912-13200931 | None:intergenic | 20.0% |
| !! | AAATCAAAATCTCCTTATTA+CGG | - | chr2_3:13200955-13200974 | Msa0279360:CDS | 20.0% |
| !!! | ATTACTCTATAGTTTTTTGA+AGG | - | chr2_3:13201065-13201084 | Msa0279360:intron | 20.0% |
| !!! | GTAACGATCTTTTTATTATT+AGG | - | chr2_3:13201460-13201479 | Msa0279360:intron | 20.0% |
| !!! | AAGAATATCAATAGTCTTTT+GGG | + | chr2_3:13201516-13201535 | None:intergenic | 20.0% |
| !!! | TAAGAATATCAATAGTCTTT+TGG | + | chr2_3:13201517-13201536 | None:intergenic | 20.0% |
| !! | TTAAATCCATAAAAGTTAGA+TGG | - | chr2_3:13201621-13201640 | Msa0279360:intron | 20.0% |
| !!! | AATAAACCATCTAACTTTTA+TGG | + | chr2_3:13201630-13201649 | None:intergenic | 20.0% |
| !! | ATCAACTTATTTACGTTAAA+GGG | + | chr2_3:13201714-13201733 | None:intergenic | 20.0% |
| !! | TTAACATTTATCGTTTATGT+CGG | + | chr2_3:13201747-13201766 | None:intergenic | 20.0% |
| !! | TATATCTTTCCTAATTAATC+CGG | + | chr2_3:13201799-13201818 | None:intergenic | 20.0% |
| !! | TAGTATGTTATATCAATTAG+TGG | + | chr2_3:13202117-13202136 | None:intergenic | 20.0% |
| ! | TCTTAAGTGATATTTAGTAG+AGG | - | chr2_3:13200578-13200597 | Msa0279360:intron | 25.0% |
| !! | AAATTTTTACCACCGTAATA+AGG | + | chr2_3:13200970-13200989 | None:intergenic | 25.0% |
| ! | TCATTAATCCATAATATGTG+CGG | + | chr2_3:13201125-13201144 | None:intergenic | 25.0% |
| ! | TTGTCTCAAAAAAAAGATCT+AGG | + | chr2_3:13201323-13201342 | None:intergenic | 25.0% |
| ! | TGTCAAATATTATAAATGCG+TGG | - | chr2_3:13201361-13201380 | Msa0279360:intron | 25.0% |
| ! | GTCAAATATTATAAATGCGT+GGG | - | chr2_3:13201362-13201381 | Msa0279360:intron | 25.0% |
| ! | TCAAATATTATAAATGCGTG+GGG | - | chr2_3:13201363-13201382 | Msa0279360:intron | 25.0% |
| ! | GATCAACTTATTTACGTTAA+AGG | + | chr2_3:13201715-13201734 | None:intergenic | 25.0% |
| !!! | ATATAAGTACCGGATTAATT+AGG | - | chr2_3:13201787-13201806 | Msa0279360:intron | 25.0% |
| ! | TTTACATTTGCCATTCAAAT+TGG | - | chr2_3:13201867-13201886 | Msa0279360:intron | 25.0% |
| !! | AAATGAACTTCTGAAAGAAA+AGG | - | chr2_3:13202307-13202326 | Msa0279360:intron | 25.0% |
| ! | TCTTAAGTGATATTTAGTAG+AGG | - | chr2_3:13200578-13200597 | Msa0279360:intron | 25.0% |
| !! | AAATTTTTACCACCGTAATA+AGG | + | chr2_3:13200970-13200989 | None:intergenic | 25.0% |
| ! | TCATTAATCCATAATATGTG+CGG | + | chr2_3:13201125-13201144 | None:intergenic | 25.0% |
| ! | TTGTCTCAAAAAAAAGATCT+AGG | + | chr2_3:13201323-13201342 | None:intergenic | 25.0% |
| ! | TGTCAAATATTATAAATGCG+TGG | - | chr2_3:13201361-13201380 | Msa0279360:intron | 25.0% |
| ! | GTCAAATATTATAAATGCGT+GGG | - | chr2_3:13201362-13201381 | Msa0279360:intron | 25.0% |
| ! | TCAAATATTATAAATGCGTG+GGG | - | chr2_3:13201363-13201382 | Msa0279360:intron | 25.0% |
| ! | GATCAACTTATTTACGTTAA+AGG | + | chr2_3:13201715-13201734 | None:intergenic | 25.0% |
| !!! | ATATAAGTACCGGATTAATT+AGG | - | chr2_3:13201787-13201806 | Msa0279360:intron | 25.0% |
| ! | TTTACATTTGCCATTCAAAT+TGG | - | chr2_3:13201867-13201886 | Msa0279360:intron | 25.0% |
| !! | AAATGAACTTCTGAAAGAAA+AGG | - | chr2_3:13202307-13202326 | Msa0279360:intron | 25.0% |
| AGTAAACTTGATCTTTGAAC+CGG | + | chr2_3:13200442-13200461 | None:intergenic | 30.0% | |
| CTCGTGTGATTATATATAAG+AGG | + | chr2_3:13200555-13200574 | None:intergenic | 30.0% | |
| TAAGTGATATTTAGTAGAGG+AGG | - | chr2_3:13200581-13200600 | Msa0279360:intron | 30.0% | |
| ! | TTTCGTTTGATAGATTTTGG+AGG | - | chr2_3:13200858-13200877 | Msa0279360:intron | 30.0% |
| !! | TCCTTTTATTTGATTTCGAC+CGG | - | chr2_3:13200890-13200909 | Msa0279360:intron | 30.0% |
| ! | TTACGGTGGTAAAAATTTTG+TGG | - | chr2_3:13200972-13200991 | Msa0279360:CDS | 30.0% |
| AAATACATTCATGCAGACAA+TGG | + | chr2_3:13201093-13201112 | None:intergenic | 30.0% | |
| TTTGGATAACGATTTGCAAT+TGG | - | chr2_3:13201217-13201236 | Msa0279360:intron | 30.0% | |
| ! | TTGGTTCTCTTTAAAGATCT+AGG | - | chr2_3:13201236-13201255 | Msa0279360:intron | 30.0% |
| ! | CGATCACAATCTCATTTTAT+CGG | - | chr2_3:13201552-13201571 | Msa0279360:intron | 30.0% |
| TATTGCAAGACCAATTTGAA+TGG | + | chr2_3:13201880-13201899 | None:intergenic | 30.0% | |
| !!! | TCACTTTTTTGCTTATGAGT+TGG | + | chr2_3:13201965-13201984 | None:intergenic | 30.0% |
| ATACAAAAGAGCTCAAGTTA+AGG | - | chr2_3:13202036-13202055 | Msa0279360:intron | 30.0% | |
| GGCATGTAAAAAGAATTGAA+TGG | + | chr2_3:13202096-13202115 | None:intergenic | 30.0% | |
| ! | AGCTGAAATTCAAATGCTTT+TGG | - | chr2_3:13202202-13202221 | Msa0279360:intron | 30.0% |
| ! | ATTCACGTTTGAAACAACTT+CGG | - | chr2_3:13202279-13202298 | Msa0279360:intron | 30.0% |
| AAAATTGAATCCAAGCTACT+TGG | - | chr2_3:13202463-13202482 | Msa0279360:intron | 30.0% | |
| AAATTGAATCCAAGCTACTT+GGG | - | chr2_3:13202464-13202483 | Msa0279360:intron | 30.0% | |
| AGTAAACTTGATCTTTGAAC+CGG | + | chr2_3:13200442-13200461 | None:intergenic | 30.0% | |
| CTCGTGTGATTATATATAAG+AGG | + | chr2_3:13200555-13200574 | None:intergenic | 30.0% | |
| TAAGTGATATTTAGTAGAGG+AGG | - | chr2_3:13200581-13200600 | Msa0279360:intron | 30.0% | |
| ! | TTTCGTTTGATAGATTTTGG+AGG | - | chr2_3:13200858-13200877 | Msa0279360:intron | 30.0% |
| !! | TCCTTTTATTTGATTTCGAC+CGG | - | chr2_3:13200890-13200909 | Msa0279360:intron | 30.0% |
| ! | TTACGGTGGTAAAAATTTTG+TGG | - | chr2_3:13200972-13200991 | Msa0279360:CDS | 30.0% |
| AAATACATTCATGCAGACAA+TGG | + | chr2_3:13201093-13201112 | None:intergenic | 30.0% | |
| TTTGGATAACGATTTGCAAT+TGG | - | chr2_3:13201217-13201236 | Msa0279360:intron | 30.0% | |
| ! | TTGGTTCTCTTTAAAGATCT+AGG | - | chr2_3:13201236-13201255 | Msa0279360:intron | 30.0% |
| ! | CGATCACAATCTCATTTTAT+CGG | - | chr2_3:13201552-13201571 | Msa0279360:intron | 30.0% |
| TATTGCAAGACCAATTTGAA+TGG | + | chr2_3:13201880-13201899 | None:intergenic | 30.0% | |
| !!! | TCACTTTTTTGCTTATGAGT+TGG | + | chr2_3:13201965-13201984 | None:intergenic | 30.0% |
| ATACAAAAGAGCTCAAGTTA+AGG | - | chr2_3:13202036-13202055 | Msa0279360:intron | 30.0% | |
| GGCATGTAAAAAGAATTGAA+TGG | + | chr2_3:13202096-13202115 | None:intergenic | 30.0% | |
| ! | AGCTGAAATTCAAATGCTTT+TGG | - | chr2_3:13202202-13202221 | Msa0279360:intron | 30.0% |
| ! | ATTCACGTTTGAAACAACTT+CGG | - | chr2_3:13202279-13202298 | Msa0279360:intron | 30.0% |
| AAAATTGAATCCAAGCTACT+TGG | - | chr2_3:13202463-13202482 | Msa0279360:intron | 30.0% | |
| AAATTGAATCCAAGCTACTT+GGG | - | chr2_3:13202464-13202483 | Msa0279360:intron | 30.0% | |
| GTAAACTTGATCTTTGAACC+GGG | + | chr2_3:13200441-13200460 | None:intergenic | 35.0% | |
| GGTCGAAATCAAATAAAAGG+AGG | + | chr2_3:13200891-13200910 | None:intergenic | 35.0% | |
| TCCGGTCGAAATCAAATAAA+AGG | + | chr2_3:13200894-13200913 | None:intergenic | 35.0% | |
| TCAAAATCTCCTTATTACGG+TGG | - | chr2_3:13200958-13200977 | Msa0279360:CDS | 35.0% | |
| TCAATCATGTGCAATCCAAT+TGG | + | chr2_3:13201042-13201061 | None:intergenic | 35.0% | |
| AATTGGATTGCACATGATTG+AGG | - | chr2_3:13201041-13201060 | Msa0279360:intron | 35.0% | |
| TTGTCTAGATTTGTGCTTCA+TGG | - | chr2_3:13201823-13201842 | Msa0279360:intron | 35.0% | |
| TCTCAAGAATGCTACTCAAA+AGG | - | chr2_3:13202160-13202179 | Msa0279360:intron | 35.0% | |
| !! | AAATGCTTTTGGAAGCGAAA+AGG | - | chr2_3:13202213-13202232 | Msa0279360:intron | 35.0% |
| !! | AATGCTTTTGGAAGCGAAAA+GGG | - | chr2_3:13202214-13202233 | Msa0279360:intron | 35.0% |
| ! | GTTGTTTCAAACGTGAATCA+CGG | + | chr2_3:13202277-13202296 | None:intergenic | 35.0% |
| GTAAACTTGATCTTTGAACC+GGG | + | chr2_3:13200441-13200460 | None:intergenic | 35.0% | |
| GGTCGAAATCAAATAAAAGG+AGG | + | chr2_3:13200891-13200910 | None:intergenic | 35.0% | |
| TCCGGTCGAAATCAAATAAA+AGG | + | chr2_3:13200894-13200913 | None:intergenic | 35.0% | |
| TCAAAATCTCCTTATTACGG+TGG | - | chr2_3:13200958-13200977 | Msa0279360:CDS | 35.0% | |
| TCAATCATGTGCAATCCAAT+TGG | + | chr2_3:13201042-13201061 | None:intergenic | 35.0% | |
| AATTGGATTGCACATGATTG+AGG | - | chr2_3:13201041-13201060 | Msa0279360:intron | 35.0% | |
| TTGTCTAGATTTGTGCTTCA+TGG | - | chr2_3:13201823-13201842 | Msa0279360:intron | 35.0% | |
| TCTCAAGAATGCTACTCAAA+AGG | - | chr2_3:13202160-13202179 | Msa0279360:intron | 35.0% | |
| !! | AAATGCTTTTGGAAGCGAAA+AGG | - | chr2_3:13202213-13202232 | Msa0279360:intron | 35.0% |
| !! | AATGCTTTTGGAAGCGAAAA+GGG | - | chr2_3:13202214-13202233 | Msa0279360:intron | 35.0% |
| ! | GTTGTTTCAAACGTGAATCA+CGG | + | chr2_3:13202277-13202296 | None:intergenic | 35.0% |
| AGATTAGCGCCACCTAAAAA+TGG | - | chr2_3:13200734-13200753 | Msa0279360:CDS | 40.0% | |
| !! | GGAAAAGCTCCATTTTTAGG+TGG | + | chr2_3:13200746-13200765 | None:intergenic | 40.0% |
| !! | CGAGGAAAAGCTCCATTTTT+AGG | + | chr2_3:13200749-13200768 | None:intergenic | 40.0% |
| ATTCTGCTGCTCAAAGATCT+AGG | - | chr2_3:13200771-13200790 | Msa0279360:CDS | 40.0% | |
| TCCATAATATGTGCGGTCAT+TGG | + | chr2_3:13201118-13201137 | None:intergenic | 40.0% | |
| ! | TTATCGTTTATGTCGGTGCT+AGG | + | chr2_3:13201740-13201759 | None:intergenic | 40.0% |
| TTGAGCCAAAACAAGTGAAC+TGG | - | chr2_3:13202005-13202024 | Msa0279360:intron | 40.0% | |
| ! | AACCACCAGTTCACTTGTTT+TGG | + | chr2_3:13202013-13202032 | None:intergenic | 40.0% |
| TTTGGAAGCGAAAAGGGAAA+TGG | - | chr2_3:13202220-13202239 | Msa0279360:intron | 40.0% | |
| CTATCACTGGAGTTGAAGTT+AGG | - | chr2_3:13202497-13202516 | Msa0279360:intron | 40.0% | |
| GTTCCATCTGATGATCTTTC+GGG | + | chr2_3:13202527-13202546 | None:intergenic | 40.0% | |
| GGTTCCATCTGATGATCTTT+CGG | + | chr2_3:13202528-13202547 | None:intergenic | 40.0% | |
| AGATTAGCGCCACCTAAAAA+TGG | - | chr2_3:13200734-13200753 | Msa0279360:CDS | 40.0% | |
| !! | GGAAAAGCTCCATTTTTAGG+TGG | + | chr2_3:13200746-13200765 | None:intergenic | 40.0% |
| !! | CGAGGAAAAGCTCCATTTTT+AGG | + | chr2_3:13200749-13200768 | None:intergenic | 40.0% |
| ATTCTGCTGCTCAAAGATCT+AGG | - | chr2_3:13200771-13200790 | Msa0279360:CDS | 40.0% | |
| TCCATAATATGTGCGGTCAT+TGG | + | chr2_3:13201118-13201137 | None:intergenic | 40.0% | |
| ! | TTATCGTTTATGTCGGTGCT+AGG | + | chr2_3:13201740-13201759 | None:intergenic | 40.0% |
| TTGAGCCAAAACAAGTGAAC+TGG | - | chr2_3:13202005-13202024 | Msa0279360:intron | 40.0% | |
| ! | AACCACCAGTTCACTTGTTT+TGG | + | chr2_3:13202013-13202032 | None:intergenic | 40.0% |
| TTTGGAAGCGAAAAGGGAAA+TGG | - | chr2_3:13202220-13202239 | Msa0279360:intron | 40.0% | |
| CTATCACTGGAGTTGAAGTT+AGG | - | chr2_3:13202497-13202516 | Msa0279360:intron | 40.0% | |
| GTTCCATCTGATGATCTTTC+GGG | + | chr2_3:13202527-13202546 | None:intergenic | 40.0% | |
| GGTTCCATCTGATGATCTTT+CGG | + | chr2_3:13202528-13202547 | None:intergenic | 40.0% | |
| ! | GTGGAGAGTTTTTCGCCAAT+TGG | - | chr2_3:13201024-13201043 | Msa0279360:CDS | 45.0% |
| GCCAATGACCGCACATATTA+TGG | - | chr2_3:13201114-13201133 | Msa0279360:intron | 45.0% | |
| AGTGAAATAGCCGAAGAGCT+TGG | - | chr2_3:13201980-13201999 | Msa0279360:intron | 45.0% | |
| AGCCAAAACAAGTGAACTGG+TGG | - | chr2_3:13202008-13202027 | Msa0279360:intron | 45.0% | |
| CTTCCCGAAAGATCATCAGA+TGG | - | chr2_3:13202521-13202540 | Msa0279360:intron | 45.0% | |
| ! | GTGGAGAGTTTTTCGCCAAT+TGG | - | chr2_3:13201024-13201043 | Msa0279360:CDS | 45.0% |
| GCCAATGACCGCACATATTA+TGG | - | chr2_3:13201114-13201133 | Msa0279360:intron | 45.0% | |
| AGTGAAATAGCCGAAGAGCT+TGG | - | chr2_3:13201980-13201999 | Msa0279360:intron | 45.0% | |
| AGCCAAAACAAGTGAACTGG+TGG | - | chr2_3:13202008-13202027 | Msa0279360:intron | 45.0% | |
| CTTCCCGAAAGATCATCAGA+TGG | - | chr2_3:13202521-13202540 | Msa0279360:intron | 45.0% | |
| !!! | TTTTTTAATTAAAAAAAATG+GGG | + | chr2_3:13200501-13200520 | None:intergenic | 5.0% |
| !! | TTAATTAAAAAATTAATCTT+TGG | - | chr2_3:13200509-13200528 | Msa0279360:CDS | 5.0% |
| !!! | ACAAAATTTTTTTTTTTTTT+TGG | + | chr2_3:13201006-13201025 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAAAAAATTTTG+TGG | - | chr2_3:13201005-13201024 | Msa0279360:CDS | 5.0% |
| !! | TTTAAAAAAAATAAAACTAA+TGG | + | chr2_3:13201299-13201318 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTAAAAAAAATG+GGG | + | chr2_3:13200501-13200520 | None:intergenic | 5.0% |
| !! | TTAATTAAAAAATTAATCTT+TGG | - | chr2_3:13200509-13200528 | Msa0279360:CDS | 5.0% |
| !!! | ACAAAATTTTTTTTTTTTTT+TGG | + | chr2_3:13201006-13201025 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAAAAAATTTTG+TGG | - | chr2_3:13201005-13201024 | Msa0279360:CDS | 5.0% |
| !! | TTTAAAAAAAATAAAACTAA+TGG | + | chr2_3:13201299-13201318 | None:intergenic | 5.0% |
| CTTTGAGCAGCAGAATGACG+AGG | + | chr2_3:13200767-13200786 | None:intergenic | 50.0% | |
| TGGCTCAAGACCAAGCTCTT+CGG | + | chr2_3:13201993-13202012 | None:intergenic | 50.0% | |
| AACGTGAATCACGGCATGCT+TGG | + | chr2_3:13202268-13202287 | None:intergenic | 50.0% | |
| TCCAAGCTACTTGGGAGAAG+AGG | - | chr2_3:13202472-13202491 | Msa0279360:intron | 50.0% | |
| TCCTCTTCTCCCAAGTAGCT+TGG | + | chr2_3:13202476-13202495 | None:intergenic | 50.0% | |
| GGGAGAAGAGGAACTATCAC+TGG | - | chr2_3:13202484-13202503 | Msa0279360:intron | 50.0% | |
| CTTTGAGCAGCAGAATGACG+AGG | + | chr2_3:13200767-13200786 | None:intergenic | 50.0% | |
| TGGCTCAAGACCAAGCTCTT+CGG | + | chr2_3:13201993-13202012 | None:intergenic | 50.0% | |
| AACGTGAATCACGGCATGCT+TGG | + | chr2_3:13202268-13202287 | None:intergenic | 50.0% | |
| TCCAAGCTACTTGGGAGAAG+AGG | - | chr2_3:13202472-13202491 | Msa0279360:intron | 50.0% | |
| TCCTCTTCTCCCAAGTAGCT+TGG | + | chr2_3:13202476-13202495 | None:intergenic | 50.0% | |
| GGGAGAAGAGGAACTATCAC+TGG | - | chr2_3:13202484-13202503 | Msa0279360:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13200434 | 13202553 | 13200434 | ID=Msa0279360;Name=Msa0279360 |
| chr2_3 | mRNA | 13200434 | 13202553 | 13200434 | ID=Msa0279360-mRNA-1;Parent=Msa0279360;Name=Msa0279360-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.75|0.66|0.5|4|0|128 |
| chr2_3 | exon | 13202546 | 13202553 | 13202546 | ID=Msa0279360-mRNA-1:exon:5694;Parent=Msa0279360-mRNA-1 |
| chr2_3 | exon | 13200930 | 13201047 | 13200930 | ID=Msa0279360-mRNA-1:exon:5693;Parent=Msa0279360-mRNA-1 |
| chr2_3 | exon | 13200659 | 13200820 | 13200659 | ID=Msa0279360-mRNA-1:exon:5692;Parent=Msa0279360-mRNA-1 |
| chr2_3 | exon | 13200434 | 13200529 | 13200434 | ID=Msa0279360-mRNA-1:exon:5691;Parent=Msa0279360-mRNA-1 |
| chr2_3 | CDS | 13202546 | 13202553 | 13202546 | ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1 |
| chr2_3 | CDS | 13200930 | 13201047 | 13200930 | ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1 |
| chr2_3 | CDS | 13200659 | 13200820 | 13200659 | ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1 |
| chr2_3 | CDS | 13200434 | 13200529 | 13200434 | ID=Msa0279360-mRNA-1:cds;Parent=Msa0279360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
