Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279380 | AES64817.2 | 88.818 | 626 | 48 | 6 | 3 | 615 | 33 | 649 | 0.0 | 1121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279380 | sp|Q9FX31|HDG11_ARATH | 35.714 | 672 | 361 | 19 | 4 | 613 | 51 | 713 | 1.78e-119 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279380 | G7IKY6 | 88.818 | 626 | 48 | 6 | 3 | 615 | 33 | 649 | 0.0 | 1121 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0279380 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279380 | MtrunA17_Chr2g0292761 | 86.372 | 565 | 41 | 7 | 64 | 615 | 1 | 542 | 0.0 | 964 |
| Msa0279380 | MtrunA17_Chr6g0481041 | 34.214 | 681 | 374 | 14 | 3 | 613 | 47 | 723 | 7.82e-128 | 393 |
| Msa0279380 | MtrunA17_Chr2g0292731 | 40.396 | 505 | 270 | 12 | 138 | 615 | 50 | 550 | 1.38e-112 | 348 |
| Msa0279380 | MtrunA17_Chr2g0292741 | 39.122 | 501 | 277 | 12 | 138 | 615 | 42 | 537 | 8.58e-107 | 332 |
| Msa0279380 | MtrunA17_Chr4g0024351 | 33.739 | 658 | 381 | 16 | 4 | 613 | 79 | 729 | 8.57e-104 | 330 |
| Msa0279380 | MtrunA17_Chr2g0322731 | 33.945 | 654 | 381 | 16 | 4 | 613 | 119 | 765 | 2.17e-100 | 322 |
| Msa0279380 | MtrunA17_Chr8g0350321 | 32.206 | 680 | 386 | 20 | 3 | 613 | 133 | 806 | 3.60e-96 | 312 |
| Msa0279380 | MtrunA17_Chr7g0246631 | 32.143 | 672 | 389 | 20 | 3 | 613 | 109 | 774 | 3.00e-95 | 309 |
| Msa0279380 | MtrunA17_Chr5g0410711 | 32.941 | 680 | 364 | 22 | 3 | 605 | 107 | 771 | 8.92e-95 | 308 |
| Msa0279380 | MtrunA17_Chr1g0203671 | 31.449 | 690 | 379 | 21 | 4 | 613 | 114 | 789 | 9.53e-89 | 292 |
| Msa0279380 | MtrunA17_Chr2g0331581 | 32.175 | 662 | 369 | 23 | 3 | 613 | 157 | 789 | 1.47e-88 | 291 |
| Msa0279380 | MtrunA17_Chr6g0472471 | 29.769 | 692 | 392 | 26 | 3 | 613 | 87 | 765 | 1.21e-81 | 273 |
| Msa0279380 | MtrunA17_Chr7g0224451 | 36.983 | 411 | 214 | 10 | 3 | 399 | 34 | 413 | 1.46e-79 | 258 |
| Msa0279380 | MtrunA17_Chr5g0394111 | 30.388 | 645 | 366 | 18 | 4 | 614 | 52 | 647 | 5.61e-76 | 254 |
| Msa0279380 | MtrunA17_Chr2g0292771 | 85.366 | 123 | 17 | 1 | 494 | 615 | 3 | 125 | 5.60e-58 | 191 |
| Msa0279380 | MtrunA17_Chr7g0224481 | 36.858 | 331 | 169 | 10 | 3 | 318 | 34 | 339 | 2.95e-57 | 196 |
| Msa0279380 | MtrunA17_Chr7g0224491 | 31.715 | 309 | 175 | 8 | 323 | 613 | 3 | 293 | 1.41e-34 | 133 |
| Msa0279380 | MtrunA17_Chr2g0304191 | 50.376 | 133 | 58 | 3 | 161 | 286 | 2 | 133 | 1.97e-31 | 119 |
| Msa0279380 | MtrunA17_Chr2g0319671 | 34.706 | 170 | 105 | 3 | 201 | 370 | 105 | 268 | 4.32e-27 | 112 |
| Msa0279380 | MtrunA17_Chr2g0319691 | 38.889 | 108 | 60 | 3 | 260 | 365 | 1 | 104 | 4.56e-15 | 73.2 |
| Msa0279380 | MtrunA17_Chr5g0419821 | 42.574 | 101 | 51 | 1 | 3 | 96 | 52 | 152 | 9.68e-15 | 72.8 |
| Msa0279380 | MtrunA17_Chr7g0224431 | 31.034 | 145 | 60 | 3 | 184 | 328 | 16 | 120 | 6.65e-14 | 68.6 |
| Msa0279380 | MtrunA17_Chr2g0292781 | 47.253 | 91 | 40 | 3 | 40 | 130 | 2 | 84 | 2.31e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279380 | AT1G73360.1 | 35.714 | 672 | 361 | 19 | 4 | 613 | 51 | 713 | 1.81e-120 | 374 |
| Msa0279380 | AT3G03260.1 | 37.481 | 667 | 349 | 23 | 4 | 615 | 42 | 695 | 9.47e-116 | 361 |
| Msa0279380 | AT1G17920.2 | 34.909 | 656 | 367 | 19 | 4 | 613 | 40 | 681 | 1.69e-110 | 347 |
| Msa0279380 | AT1G17920.1 | 34.909 | 656 | 367 | 19 | 4 | 613 | 40 | 681 | 1.69e-110 | 347 |
| Msa0279380 | AT1G34650.1 | 35.735 | 680 | 363 | 17 | 3 | 615 | 34 | 706 | 1.59e-107 | 340 |
| Msa0279380 | AT5G17320.1 | 34.802 | 681 | 363 | 23 | 4 | 613 | 45 | 715 | 4.00e-106 | 336 |
| Msa0279380 | AT1G05230.3 | 34.633 | 641 | 379 | 15 | 4 | 613 | 83 | 714 | 4.08e-105 | 333 |
| Msa0279380 | AT1G05230.8 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.4 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.9 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.10 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.7 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.11 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.2 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.6 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.5 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT1G05230.1 | 34.526 | 643 | 379 | 16 | 4 | 613 | 83 | 716 | 3.18e-103 | 329 |
| Msa0279380 | AT4G04890.2 | 33.733 | 667 | 373 | 16 | 4 | 613 | 81 | 735 | 3.62e-101 | 324 |
| Msa0279380 | AT4G04890.1 | 33.733 | 667 | 373 | 16 | 4 | 613 | 81 | 735 | 3.62e-101 | 324 |
| Msa0279380 | AT4G21750.2 | 32.897 | 687 | 374 | 18 | 4 | 613 | 81 | 757 | 3.81e-98 | 317 |
| Msa0279380 | AT4G21750.1 | 32.897 | 687 | 374 | 18 | 4 | 613 | 81 | 757 | 3.81e-98 | 317 |
| Msa0279380 | AT4G21750.3 | 32.897 | 687 | 374 | 18 | 4 | 613 | 81 | 757 | 3.81e-98 | 317 |
| Msa0279380 | AT4G21750.4 | 32.897 | 687 | 374 | 18 | 4 | 613 | 81 | 757 | 3.81e-98 | 317 |
| Msa0279380 | AT3G61150.1 | 32.179 | 693 | 371 | 22 | 3 | 613 | 128 | 803 | 3.44e-96 | 312 |
| Msa0279380 | AT4G00730.1 | 32.165 | 656 | 391 | 18 | 3 | 613 | 152 | 798 | 1.37e-94 | 308 |
| Msa0279380 | AT3G03260.2 | 39.078 | 499 | 259 | 15 | 4 | 465 | 42 | 532 | 1.12e-92 | 296 |
| Msa0279380 | AT2G32370.1 | 29.985 | 647 | 390 | 16 | 3 | 605 | 86 | 713 | 9.55e-88 | 288 |
| Msa0279380 | AT5G52170.3 | 30.889 | 641 | 376 | 16 | 3 | 613 | 75 | 678 | 6.91e-86 | 282 |
| Msa0279380 | AT5G52170.1 | 30.889 | 641 | 376 | 16 | 3 | 613 | 75 | 678 | 6.91e-86 | 282 |
| Msa0279380 | AT5G52170.2 | 30.949 | 643 | 378 | 15 | 3 | 613 | 75 | 683 | 1.46e-85 | 281 |
| Msa0279380 | AT1G05230.12 | 34.275 | 531 | 314 | 11 | 3 | 505 | 82 | 605 | 4.08e-85 | 278 |
| Msa0279380 | AT1G79840.3 | 32.353 | 646 | 380 | 23 | 3 | 613 | 61 | 684 | 1.83e-84 | 278 |
| Msa0279380 | AT1G79840.6 | 32.353 | 646 | 380 | 23 | 3 | 613 | 61 | 684 | 1.83e-84 | 278 |
| Msa0279380 | AT1G79840.1 | 32.353 | 646 | 380 | 23 | 3 | 613 | 119 | 742 | 7.77e-84 | 278 |
| Msa0279380 | AT1G79840.2 | 32.353 | 646 | 380 | 23 | 3 | 613 | 148 | 771 | 1.31e-83 | 278 |
| Msa0279380 | AT5G46880.3 | 32.174 | 690 | 381 | 26 | 3 | 615 | 129 | 808 | 1.31e-82 | 276 |
| Msa0279380 | AT5G46880.1 | 32.174 | 690 | 381 | 26 | 3 | 615 | 129 | 808 | 1.31e-82 | 276 |
| Msa0279380 | AT5G46880.2 | 32.174 | 690 | 381 | 26 | 3 | 615 | 129 | 808 | 1.31e-82 | 276 |
| Msa0279380 | AT4G17710.1 | 29.338 | 634 | 393 | 17 | 3 | 615 | 106 | 705 | 1.70e-73 | 249 |
| Msa0279380 | AT4G25530.1 | 27.911 | 627 | 422 | 11 | 9 | 613 | 64 | 682 | 9.67e-69 | 236 |
| Msa0279380 | AT1G79840.4 | 32.054 | 521 | 311 | 16 | 3 | 499 | 119 | 620 | 3.31e-68 | 234 |
| Msa0279380 | AT4G00730.2 | 34.015 | 391 | 229 | 9 | 3 | 367 | 152 | 539 | 1.76e-64 | 222 |
| Msa0279380 | AT1G79840.5 | 33.161 | 386 | 223 | 13 | 3 | 371 | 119 | 486 | 4.12e-53 | 190 |
| Msa0279380 | AT5G07260.2 | 25.599 | 543 | 305 | 24 | 45 | 557 | 11 | 484 | 2.90e-26 | 113 |
| Msa0279380 | AT5G07260.1 | 25.182 | 548 | 306 | 23 | 45 | 557 | 11 | 489 | 6.67e-26 | 112 |
Find 111 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTGGTCGACATGTTTC+TGG | 0.149362 | 2_3:-13222749 | Msa0279380:CDS |
| AAAGCTCCACTTTGACTTTC+TGG | 0.209562 | 2_3:+13222458 | None:intergenic |
| AATAATCTTCACACCATCTT+TGG | 0.210210 | 2_3:+13220603 | None:intergenic |
| TTCAACTCTTGTGTGTTTAC+AGG | 0.236305 | 2_3:+13220535 | None:intergenic |
| GAAGTTCCATGAGCCATCTT+TGG | 0.238463 | 2_3:+13221961 | None:intergenic |
| AGAGTTGACCACTACTTTAA+TGG | 0.241174 | 2_3:-13222829 | Msa0279380:CDS |
| TGAAGTTGTTTCAAACTATT+AGG | 0.271208 | 2_3:+13223384 | None:intergenic |
| TCAAAGTGGAGCTTTGTTAT+TGG | 0.273622 | 2_3:-13222450 | Msa0279380:intron |
| GATTCACAAATGGTGAAAAT+TGG | 0.281622 | 2_3:-13222778 | Msa0279380:CDS |
| GTCAACAATGCTATTGCATT+TGG | 0.284967 | 2_3:-13221987 | Msa0279380:CDS |
| GCGCGGAGAGCATCGTTATC+TGG | 0.316509 | 2_3:+13223486 | None:intergenic |
| GTGGCTCAAGCTCAAGCTCC+TGG | 0.323796 | 2_3:+13223681 | None:intergenic |
| CCACTATGTATCAATTATTC+AGG | 0.339498 | 2_3:-13221318 | Msa0279380:intron |
| TGATGATTCAACATGTGTTT+TGG | 0.340849 | 2_3:+13222804 | None:intergenic |
| GTCTCTTTCAAGCACTTTGA+TGG | 0.342907 | 2_3:+13222484 | None:intergenic |
| AAGTTCCATGAGCCATCTTT+GGG | 0.351674 | 2_3:+13221962 | None:intergenic |
| AGAATGTTTCATAGACCCTT+TGG | 0.370185 | 2_3:-13220578 | Msa0279380:CDS |
| TGAACCTCAAAACGTCTTGC+CGG | 0.371480 | 2_3:+13221499 | None:intergenic |
| TAATAGTTTGAAACAACTTC+AGG | 0.374417 | 2_3:-13223382 | Msa0279380:CDS |
| GGTCGACATGTTTCTGGATT+CGG | 0.374726 | 2_3:-13222743 | Msa0279380:intron |
| TCAGCTTTGCTAACAATAGT+TGG | 0.380163 | 2_3:+13222509 | None:intergenic |
| AACATGCTCTACTTAATTAG+TGG | 0.387024 | 2_3:-13220291 | None:intergenic |
| AAGCTCCACTTTGACTTTCT+GGG | 0.391206 | 2_3:+13222459 | None:intergenic |
| CTCATGGAACTTCAAAGAAT+TGG | 0.391578 | 2_3:-13221951 | Msa0279380:CDS |
| TTTCCGCGATGAGTCCTTAT+GGG | 0.399067 | 2_3:-13222911 | Msa0279380:intron |
| AATTCCCGTGGTTTCACTAA+AGG | 0.399551 | 2_3:+13222321 | None:intergenic |
| AGTCCAGCCACCAACATCAT+TGG | 0.401935 | 2_3:+13222961 | None:intergenic |
| ATTACACATCTCCTTCCTTC+AGG | 0.404458 | 2_3:+13221745 | None:intergenic |
| ATGCTGATGACAGCGGGGTT+AGG | 0.405153 | 2_3:-13221639 | Msa0279380:CDS |
| ATAATCTTCACACCATCTTT+GGG | 0.405420 | 2_3:+13220604 | None:intergenic |
| GAAAATTGGAGCAAGACATT+TGG | 0.407628 | 2_3:-13222764 | Msa0279380:CDS |
| GAAAGAGAACATGGAAATGA+AGG | 0.408587 | 2_3:-13223445 | Msa0279380:CDS |
| AAACACACAAGAGTTGAATA+TGG | 0.410220 | 2_3:-13220530 | Msa0279380:CDS |
| TATTAGGATCATTACATGAT+TGG | 0.413021 | 2_3:+13223400 | None:intergenic |
| GAATGTTTCATAGACCCTTT+GGG | 0.421156 | 2_3:-13220577 | Msa0279380:CDS |
| AAACAAAAGAGCACAGGTTA+AGG | 0.425246 | 2_3:-13223636 | Msa0279380:intron |
| ACTTGCACATCAGGTTGTTA+AGG | 0.426416 | 2_3:-13221719 | Msa0279380:intron |
| GTCCAGCCACCAACATCATT+GGG | 0.447296 | 2_3:+13222962 | None:intergenic |
| CTCTTATGATTACTTGAAAG+AGG | 0.447977 | 2_3:-13222241 | Msa0279380:CDS |
| CACTGTCAGCAACGAACCTC+TGG | 0.459310 | 2_3:+13220411 | None:intergenic |
| TTAAAGTAGTGGTCAACTCT+AGG | 0.461640 | 2_3:+13222832 | None:intergenic |
| TTGCTGATGCTGATGACAGC+GGG | 0.466069 | 2_3:-13221645 | Msa0279380:CDS |
| TTTCGACTTCTTAAGAGATC+CGG | 0.468769 | 2_3:-13221518 | Msa0279380:CDS |
| AACCACCACTTCACTTGTTG+TGG | 0.474712 | 2_3:+13223662 | None:intergenic |
| GAAATTGCACACATCTCTAC+TGG | 0.475230 | 2_3:-13221353 | Msa0279380:CDS |
| GTGTCACTTATAATTCCATC+AGG | 0.478904 | 2_3:-13220481 | Msa0279380:CDS |
| CTAGCAACAATAACAATGAA+TGG | 0.482675 | 2_3:+13221574 | None:intergenic |
| AAAATGCACGTCTCAAAGAA+AGG | 0.487725 | 2_3:-13223356 | Msa0279380:CDS |
| GAAATTCACTTCCAAGGTCC+AGG | 0.488853 | 2_3:-13223104 | Msa0279380:CDS |
| TTGCATTTGGAGCCCAAAGA+TGG | 0.489863 | 2_3:-13221974 | Msa0279380:CDS |
| TGAGCCTCTATCTAGATTCA+AGG | 0.490503 | 2_3:+13223014 | None:intergenic |
| TATGATTACTTGAAAGAGGA+TGG | 0.498521 | 2_3:-13222237 | Msa0279380:CDS |
| GTGACACATTTGATAAATCA+TGG | 0.499449 | 2_3:+13220497 | None:intergenic |
| AATAATTGATACATAGTGGT+TGG | 0.500783 | 2_3:+13221322 | None:intergenic |
| ACCTCCTTGAATCTAGATAG+AGG | 0.506046 | 2_3:-13223018 | Msa0279380:CDS |
| GATTCAAAATTTGCAACAAG+AGG | 0.507082 | 2_3:+13220364 | None:intergenic |
| TTGGATTGAGCATGTGGAAG+TGG | 0.507994 | 2_3:-13222048 | Msa0279380:CDS |
| TAGCAACAATAACAATGAAT+GGG | 0.509698 | 2_3:+13221575 | None:intergenic |
| AAATTTGCAACAAGAGGACT+AGG | 0.517166 | 2_3:+13220370 | None:intergenic |
| CCTGAATAATTGATACATAG+TGG | 0.522975 | 2_3:+13221318 | None:intergenic |
| ATCATCAAAAGATTCACAAA+TGG | 0.526011 | 2_3:-13222788 | Msa0279380:CDS |
| TGGCTCAAGCTCAAGCTCCT+GGG | 0.527865 | 2_3:+13223682 | None:intergenic |
| AACCCAATGATGTTGGTGGC+TGG | 0.530454 | 2_3:-13222964 | Msa0279380:CDS |
| TAAAGTAGTGGTCAACTCTA+GGG | 0.531595 | 2_3:+13222833 | None:intergenic |
| CCTCTAGTTTCTCCCAAAGA+TGG | 0.533895 | 2_3:-13220616 | Msa0279380:CDS |
| AAGCTGAGACTTAACCCATA+AGG | 0.535338 | 2_3:+13222897 | None:intergenic |
| TGGAGCCCAAAGATGGCTCA+TGG | 0.538769 | 2_3:-13221967 | Msa0279380:CDS |
| AGCTCCACTTTGACTTTCTG+GGG | 0.544796 | 2_3:+13222460 | None:intergenic |
| CTCTCCGCGCTGAAAATGAA+AGG | 0.545522 | 2_3:-13223473 | Msa0279380:CDS |
| TACAAGTTGAAGCTGGTATG+TGG | 0.546205 | 2_3:-13222278 | Msa0279380:CDS |
| AGTCGAAAACAATATGAGAC+GGG | 0.556073 | 2_3:+13221533 | None:intergenic |
| GGTTTCTTGGATTGAGCATG+TGG | 0.560486 | 2_3:-13222054 | Msa0279380:CDS |
| ATAATTGATACATAGTGGTT+GGG | 0.560512 | 2_3:+13221323 | None:intergenic |
| AATACAAAACCCAATGATGT+TGG | 0.560670 | 2_3:-13222971 | Msa0279380:CDS |
| AAATGCACGTCTCAAAGAAA+GGG | 0.562937 | 2_3:-13223355 | Msa0279380:intron |
| ATGTGTGCAATTTCATGCCA+TGG | 0.566418 | 2_3:+13221362 | None:intergenic |
| GAGTTGAATATGGCAATGAA+TGG | 0.573412 | 2_3:-13220520 | Msa0279380:CDS |
| AATATCTAATGAGACTTCCA+AGG | 0.574407 | 2_3:-13222166 | Msa0279380:intron |
| GACTCCCCAGAAAGTCAAAG+TGG | 0.577198 | 2_3:-13222464 | Msa0279380:CDS |
| TTATGCTACGTACAGATGCA+TGG | 0.588414 | 2_3:-13222363 | Msa0279380:intron |
| AAGTCGAAAACAATATGAGA+CGG | 0.588442 | 2_3:+13221532 | None:intergenic |
| GGTGGCTGGACTTGCCGCCA+CGG | 0.591534 | 2_3:-13222950 | Msa0279380:CDS |
| TGATGGGAAATTCACTTCCA+AGG | 0.591880 | 2_3:-13223110 | Msa0279380:CDS |
| GTTTCAAAACAAAAGAGCAC+AGG | 0.592799 | 2_3:-13223642 | Msa0279380:CDS |
| CAGAGGTTCGTTGCTGACAG+TGG | 0.595573 | 2_3:-13220410 | Msa0279380:CDS |
| AAACAACATAGGATCCCAAA+GGG | 0.596630 | 2_3:+13220563 | None:intergenic |
| AGCCACAACAAGTGAAGTGG+TGG | 0.600152 | 2_3:-13223664 | Msa0279380:CDS |
| TATTGCGTACAAGTTGAAGC+TGG | 0.606947 | 2_3:-13222285 | Msa0279380:CDS |
| AAAACAATATGAGACGGGAG+AGG | 0.618201 | 2_3:+13221538 | None:intergenic |
| TCAGTGGTTACATTACCTGA+AGG | 0.618247 | 2_3:-13221760 | Msa0279380:intron |
| TTCACCTTTAGTGAAACCAC+GGG | 0.619254 | 2_3:-13222325 | Msa0279380:CDS |
| AAATTCACTTCCAAGGTCCA+GGG | 0.620783 | 2_3:-13223103 | Msa0279380:CDS |
| TACAGGAGAATAAACAACAT+AGG | 0.623592 | 2_3:+13220552 | None:intergenic |
| CGAAGAAAGTAAAATTCCCG+TGG | 0.624894 | 2_3:+13222309 | None:intergenic |
| TGGTTACATTACCTGAAGGA+AGG | 0.625611 | 2_3:-13221756 | Msa0279380:CDS |
| CTTCCTAAAAGCTCGACACG+TGG | 0.628257 | 2_3:-13223045 | Msa0279380:CDS |
| AAGCTTAAGCAACTCTTCCG+TGG | 0.628294 | 2_3:+13222933 | None:intergenic |
| TTGAGCCACAACAAGTGAAG+TGG | 0.628334 | 2_3:-13223667 | Msa0279380:CDS |
| TAAACAACATAGGATCCCAA+AGG | 0.631648 | 2_3:+13220562 | None:intergenic |
| TCAGCATCAGCAAAGTATTG+TGG | 0.632074 | 2_3:+13221655 | None:intergenic |
| TTTCACCTTTAGTGAAACCA+CGG | 0.633802 | 2_3:-13222326 | Msa0279380:CDS |
| ACAAAACCCAATGATGTTGG+TGG | 0.641799 | 2_3:-13222968 | Msa0279380:CDS |
| TCAAAAGATAGTAAATCCAG+AGG | 0.643636 | 2_3:-13220427 | Msa0279380:CDS |
| AGACGGGAGAGGTATCAAAA+CGG | 0.645863 | 2_3:+13221549 | None:intergenic |
| CCATCTTTGGGAGAAACTAG+AGG | 0.657543 | 2_3:+13220616 | None:intergenic |
| ACAAGTTGAAGCTGGTATGT+GGG | 0.664498 | 2_3:-13222277 | Msa0279380:CDS |
| TTTGCTGATGCTGATGACAG+CGG | 0.677579 | 2_3:-13221646 | Msa0279380:CDS |
| TGCTGATGCTGATGACAGCG+GGG | 0.703574 | 2_3:-13221644 | Msa0279380:CDS |
| GCCTCTATCTAGATTCAAGG+AGG | 0.723251 | 2_3:+13223017 | None:intergenic |
| CTTAAGCAACTCTTCCGTGG+CGG | 0.730831 | 2_3:+13222936 | None:intergenic |
| TAACCCATAAGGACTCATCG+CGG | 0.774250 | 2_3:+13222908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTTTTTTTTTTG+TGG | - | chr2_3:13220344-13220363 | Msa0279380:CDS | 10.0% |
| !!! | AATATATGGTTTTTTTTTAA+TGG | + | chr2_3:13220762-13220781 | None:intergenic | 10.0% |
| !! | TGATGAATATTTAATTAATT+AGG | - | chr2_3:13220825-13220844 | Msa0279380:intron | 10.0% |
| !! | ATTCTCTTATAAATAAAATA+TGG | + | chr2_3:13223428-13223447 | None:intergenic | 10.0% |
| !! | ACTTTATATATATAAAAATG+TGG | + | chr2_3:13223964-13223983 | None:intergenic | 10.0% |
| !! | CATTATAGAAACTTAATATA+TGG | + | chr2_3:13220776-13220795 | None:intergenic | 15.0% |
| !!! | TTTTAAACTTATCATTCAAT+TGG | - | chr2_3:13220908-13220927 | Msa0279380:intron | 15.0% |
| !! | TTATTAGTACTTGAAATTAA+TGG | - | chr2_3:13222142-13222161 | Msa0279380:intron | 15.0% |
| !!! | GAAACATATGTTTAATTTTT+AGG | - | chr2_3:13222639-13222658 | Msa0279380:intron | 15.0% |
| !! | TAGTTAAATAGGTTAAATAA+TGG | + | chr2_3:13222857-13222876 | None:intergenic | 15.0% |
| !! | GAATACTAAAGAAAATTATA+AGG | + | chr2_3:13222888-13222907 | None:intergenic | 15.0% |
| !! | AAAGTTTCATAAAATACAAT+AGG | - | chr2_3:13223979-13223998 | Msa0279380:intron | 15.0% |
| !!! | AATTTTTTTTTCTTTCTATG+TGG | - | chr2_3:13224070-13224089 | Msa0279380:intron | 15.0% |
| !!! | TTTTGTTTTTTTTTTTGTGG+TGG | - | chr2_3:13220347-13220366 | Msa0279380:CDS | 20.0% |
| !!! | AAGTTTTTTTTTCTTTCGAA+AGG | + | chr2_3:13220475-13220494 | None:intergenic | 20.0% |
| !! | AAAAAAATTCAATGCAACAA+TGG | + | chr2_3:13220541-13220560 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTCATGTTTCAAA+AGG | - | chr2_3:13220588-13220607 | Msa0279380:CDS | 20.0% |
| !! | TAGTATGTTATATCAATTAG+TGG | + | chr2_3:13221160-13221179 | None:intergenic | 20.0% |
| !! | AAACGAAGAAAAATATTTGA+AGG | + | chr2_3:13222298-13222317 | None:intergenic | 20.0% |
| !!! | TTGAATTTTGATAACATGTT+AGG | - | chr2_3:13222326-13222345 | Msa0279380:CDS | 20.0% |
| !!! | TGAATTTTGATAACATGTTA+GGG | - | chr2_3:13222327-13222346 | Msa0279380:CDS | 20.0% |
| !!! | TGTTTAATTTTTAGGTTTCT+TGG | - | chr2_3:13222647-13222666 | Msa0279380:intron | 20.0% |
| !!! | TTCATTTATATACTTTTCAG+TGG | - | chr2_3:13222938-13222957 | Msa0279380:CDS | 20.0% |
| !!! | TAGGATTGTTTCAATTATTT+TGG | - | chr2_3:13223593-13223612 | Msa0279380:intron | 20.0% |
| !! | TTTCAAAATTTAGGCTTATT+AGG | - | chr2_3:13223624-13223643 | Msa0279380:intron | 20.0% |
| !! | TTCAAAATTTAGGCTTATTA+GGG | - | chr2_3:13223625-13223644 | Msa0279380:intron | 20.0% |
| !!! | ACAAAAGTACAAGAATAAAA+GGG | + | chr2_3:13223663-13223682 | None:intergenic | 20.0% |
| !!! | TACAAAAGTACAAGAATAAA+AGG | + | chr2_3:13223664-13223683 | None:intergenic | 20.0% |
| !! | TATCAAGTCAATAAATGAAT+CGG | + | chr2_3:13223862-13223881 | None:intergenic | 20.0% |
| !!! | TTTTGATGTGTAATTTGTTT+AGG | - | chr2_3:13224035-13224054 | Msa0279380:intron | 20.0% |
| ! | AGTTGGATTAATTAGTTGTA+AGG | + | chr2_3:13220316-13220335 | None:intergenic | 25.0% |
| ! | ACAAAAAAAGAATGATCAGT+TGG | + | chr2_3:13220333-13220352 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGTGGTGGTT+GGG | - | chr2_3:13220352-13220371 | Msa0279380:CDS | 25.0% |
| !! | TCAATACAATCTCGTTTTAT+TGG | - | chr2_3:13220640-13220659 | Msa0279380:intron | 25.0% |
| !!! | TGATATTTTTGGTTATCATC+TGG | + | chr2_3:13221007-13221026 | None:intergenic | 25.0% |
| ! | TATTAGGATCATTACATGAT+TGG | + | chr2_3:13221317-13221336 | None:intergenic | 25.0% |
| !! | TGAAGTTGTTTCAAACTATT+AGG | + | chr2_3:13221333-13221352 | None:intergenic | 25.0% |
| !! | TAATAGTTTGAAACAACTTC+AGG | - | chr2_3:13221332-13221351 | Msa0279380:CDS | 25.0% |
| !!! | TTCTTTTTAGTATGAGATGA+TGG | - | chr2_3:13221587-13221606 | Msa0279380:CDS | 25.0% |
| !!! | TCTTTTTAGTATGAGATGAT+GGG | - | chr2_3:13221588-13221607 | Msa0279380:CDS | 25.0% |
| ! | ATCATCAAAAGATTCACAAA+TGG | - | chr2_3:13221926-13221945 | Msa0279380:CDS | 25.0% |
| ! | GATCTCAATAAAAATCATTG+TGG | + | chr2_3:13222023-13222042 | None:intergenic | 25.0% |
| ! | TTAGTACTTGAAATTAATGG+TGG | - | chr2_3:13222145-13222164 | Msa0279380:intron | 25.0% |
| !! | AATTTTCTGTCTAGGAAAAA+TGG | - | chr2_3:13222170-13222189 | Msa0279380:CDS | 25.0% |
| !! | ATTTTCTGTCTAGGAAAAAT+GGG | - | chr2_3:13222171-13222190 | Msa0279380:CDS | 25.0% |
| ! | TATTATATACGTACTAACCT+TGG | + | chr2_3:13222568-13222587 | None:intergenic | 25.0% |
| !! | TACAAGCATTTTTATGACAA+TGG | - | chr2_3:13222814-13222833 | Msa0279380:CDS | 25.0% |
| !! | AGGAGTTTTCTTAGTTAAAT+AGG | + | chr2_3:13222868-13222887 | None:intergenic | 25.0% |
| ! | TAGCAACAATAACAATGAAT+GGG | + | chr2_3:13223142-13223161 | None:intergenic | 25.0% |
| !! | TGTTAATTATTTTCATGCAG+TGG | - | chr2_3:13223308-13223327 | Msa0279380:intron | 25.0% |
| !! | GTTAATTATTTTCATGCAGT+GGG | - | chr2_3:13223309-13223328 | Msa0279380:intron | 25.0% |
| ! | ATAATTGATACATAGTGGTT+GGG | + | chr2_3:13223394-13223413 | None:intergenic | 25.0% |
| ! | AATAATTGATACATAGTGGT+TGG | + | chr2_3:13223395-13223414 | None:intergenic | 25.0% |
| !! | TATGTTCATTTGAAATGACA+TGG | + | chr2_3:13223525-13223544 | None:intergenic | 25.0% |
| !!! | AAGCCTAAATTTTGAAAAGT+TGG | + | chr2_3:13223621-13223640 | None:intergenic | 25.0% |
| !! | CAAAAGTACAAGAATAAAAG+GGG | + | chr2_3:13223662-13223681 | None:intergenic | 25.0% |
| ! | ACATACAAAAACACAAGTTA+GGG | - | chr2_3:13223929-13223948 | Msa0279380:intron | 25.0% |
| !!! | TGTAATTTGTTTAGGTCTTT+TGG | - | chr2_3:13224043-13224062 | Msa0279380:intron | 25.0% |
| !!! | GTTTTTTTTTTTGTGGTGGT+TGG | - | chr2_3:13220351-13220370 | Msa0279380:CDS | 30.0% |
| !!! | TTTTTTTTTTGTGGTGGTTG+GGG | - | chr2_3:13220353-13220372 | Msa0279380:CDS | 30.0% |
| AATTCAATGCAACAATGGAA+TGG | + | chr2_3:13220536-13220555 | None:intergenic | 30.0% | |
| !! | AATCCAACTTAGGTTGATTT+AGG | + | chr2_3:13220688-13220707 | None:intergenic | 30.0% |
| CAATTCTTCAAATCCAACTT+AGG | + | chr2_3:13220698-13220717 | None:intergenic | 30.0% | |
| GTTTCTATAATGATGCTTCA+TGG | - | chr2_3:13220784-13220803 | Msa0279380:intron | 30.0% | |
| !! | AAGGATTTTGAAAGAGAACA+TGG | - | chr2_3:13221260-13221279 | Msa0279380:intron | 30.0% |
| AATACAAAACCCAATGATGT+TGG | - | chr2_3:13221743-13221762 | Msa0279380:intron | 30.0% | |
| ! | TGATGATTCAACATGTGTTT+TGG | + | chr2_3:13221913-13221932 | None:intergenic | 30.0% |
| GATTCACAAATGGTGAAAAT+TGG | - | chr2_3:13221936-13221955 | Msa0279380:CDS | 30.0% | |
| CTCTTATGATTACTTGAAAG+AGG | - | chr2_3:13222473-13222492 | Msa0279380:CDS | 30.0% | |
| TATGATTACTTGAAAGAGGA+TGG | - | chr2_3:13222477-13222496 | Msa0279380:CDS | 30.0% | |
| ! | TTTTGAATCAAACATCCAGA+AGG | + | chr2_3:13222528-13222547 | None:intergenic | 30.0% |
| AATATCTAATGAGACTTCCA+AGG | - | chr2_3:13222548-13222567 | Msa0279380:intron | 30.0% | |
| ! | AAGCATTTTTATGACAATGG+AGG | - | chr2_3:13222817-13222836 | Msa0279380:CDS | 30.0% |
| CTAGCAACAATAACAATGAA+TGG | + | chr2_3:13223143-13223162 | None:intergenic | 30.0% | |
| AAGTCGAAAACAATATGAGA+CGG | + | chr2_3:13223185-13223204 | None:intergenic | 30.0% | |
| CCTGAATAATTGATACATAG+TGG | + | chr2_3:13223399-13223418 | None:intergenic | 30.0% | |
| CCACTATGTATCAATTATTC+AGG | - | chr2_3:13223396-13223415 | Msa0279380:CDS | 30.0% | |
| ! | TTCATTTGAAATGACATGGA+AGG | + | chr2_3:13223521-13223540 | None:intergenic | 30.0% |
| TGTGTGATCAAAATGAATCT+AGG | - | chr2_3:13223574-13223593 | Msa0279380:intron | 30.0% | |
| ! | GTGCCAACTTTTCAAAATTT+AGG | - | chr2_3:13223615-13223634 | Msa0279380:intron | 30.0% |
| !! | AACTTGTTGATTTACAACTC+AGG | - | chr2_3:13223687-13223706 | Msa0279380:CDS | 30.0% |
| !! | ACTTGTTGATTTACAACTCA+GGG | - | chr2_3:13223688-13223707 | Msa0279380:CDS | 30.0% |
| TTGATGCCTTTCTTATATCT+CGG | - | chr2_3:13223711-13223730 | Msa0279380:CDS | 30.0% | |
| TCAAAGTGAAACAGTTACTT+AGG | + | chr2_3:13223755-13223774 | None:intergenic | 30.0% | |
| TTGTGAAGAACGTTTAACAT+AGG | + | chr2_3:13223780-13223799 | None:intergenic | 30.0% | |
| ! | TCACAATAGACTTAGGTTTT+TGG | - | chr2_3:13223794-13223813 | Msa0279380:intron | 30.0% |
| !!! | ACTTAGGTTTTTGGCATAAT+AGG | - | chr2_3:13223803-13223822 | Msa0279380:intron | 30.0% |
| GACATACAAAAACACAAGTT+AGG | - | chr2_3:13223928-13223947 | Msa0279380:intron | 30.0% | |
| ATAATCTTCACACCATCTTT+GGG | + | chr2_3:13224113-13224132 | None:intergenic | 30.0% | |
| AATAATCTTCACACCATCTT+TGG | + | chr2_3:13224114-13224133 | None:intergenic | 30.0% | |
| TACAGGAGAATAAACAACAT+AGG | + | chr2_3:13224165-13224184 | None:intergenic | 30.0% | |
| AAACACACAAGAGTTGAATA+TGG | - | chr2_3:13224184-13224203 | Msa0279380:intron | 30.0% | |
| GTGACACATTTGATAAATCA+TGG | + | chr2_3:13224220-13224239 | None:intergenic | 30.0% | |
| TCAAAAGATAGTAAATCCAG+AGG | - | chr2_3:13224287-13224306 | Msa0279380:intron | 30.0% | |
| GATTCAAAATTTGCAACAAG+AGG | + | chr2_3:13224353-13224372 | None:intergenic | 30.0% | |
| AGGACAATGCAATATATGCA+AGG | + | chr2_3:13220392-13220411 | None:intergenic | 35.0% | |
| ! | TGAGTTTAACTCAGTTGGTA+AGG | + | chr2_3:13220412-13220431 | None:intergenic | 35.0% |
| CTTCATGAGTTTAACTCAGT+TGG | + | chr2_3:13220417-13220436 | None:intergenic | 35.0% | |
| GTGTTGCAAACATGATCAAT+TGG | + | chr2_3:13220445-13220464 | None:intergenic | 35.0% | |
| ACGAGATTGTATTGAAGTCA+TGG | + | chr2_3:13220635-13220654 | None:intergenic | 35.0% | |
| GTAAAACTCACAGATTACAC+AGG | - | chr2_3:13220662-13220681 | Msa0279380:intron | 35.0% | |
| ! | CCTGGGCTATTTGATATTTT+TGG | + | chr2_3:13221018-13221037 | None:intergenic | 35.0% |
| CCAAAAATATCAAATAGCCC+AGG | - | chr2_3:13221015-13221034 | Msa0279380:intron | 35.0% | |
| ! | GTTTCAAAACAAAAGAGCAC+AGG | - | chr2_3:13221072-13221091 | Msa0279380:intron | 35.0% |
| ! | AAACAAAAGAGCACAGGTTA+AGG | - | chr2_3:13221078-13221097 | Msa0279380:intron | 35.0% |
| ! | AAATCCTTTCATTTTCAGCG+CGG | + | chr2_3:13221248-13221267 | None:intergenic | 35.0% |
| GAAAGAGAACATGGAAATGA+AGG | - | chr2_3:13221269-13221288 | Msa0279380:intron | 35.0% | |
| AAAATGCACGTCTCAAAGAA+AGG | - | chr2_3:13221358-13221377 | Msa0279380:CDS | 35.0% | |
| AAATGCACGTCTCAAAGAAA+GGG | - | chr2_3:13221359-13221378 | Msa0279380:CDS | 35.0% | |
| TAAAGTAGTGGTCAACTCTA+GGG | + | chr2_3:13221884-13221903 | None:intergenic | 35.0% | |
| TTAAAGTAGTGGTCAACTCT+AGG | + | chr2_3:13221885-13221904 | None:intergenic | 35.0% | |
| AGAGTTGACCACTACTTTAA+TGG | - | chr2_3:13221885-13221904 | Msa0279380:intron | 35.0% | |
| GAAAATTGGAGCAAGACATT+TGG | - | chr2_3:13221950-13221969 | Msa0279380:CDS | 35.0% | |
| !! | TGGTGGATAATTTTCTGTCT+AGG | - | chr2_3:13222162-13222181 | Msa0279380:intron | 35.0% |
| TCAGCTTTGCTAACAATAGT+TGG | + | chr2_3:13222208-13222227 | None:intergenic | 35.0% | |
| !! | TCAAAGTGGAGCTTTGTTAT+TGG | - | chr2_3:13222264-13222283 | Msa0279380:CDS | 35.0% |
| TTTCACCTTTAGTGAAACCA+CGG | - | chr2_3:13222388-13222407 | Msa0279380:intron | 35.0% | |
| ! | ATGGACCTCATTCTTCTTTT+TGG | - | chr2_3:13222496-13222515 | Msa0279380:CDS | 35.0% |
| AACCTCCAAAAAGAAGAATG+AGG | + | chr2_3:13222504-13222523 | None:intergenic | 35.0% | |
| GTCAACAATGCTATTGCATT+TGG | - | chr2_3:13222727-13222746 | Msa0279380:intron | 35.0% | |
| CTCATGGAACTTCAAAGAAT+TGG | - | chr2_3:13222763-13222782 | Msa0279380:CDS | 35.0% | |
| TGTAATGAAACTTGCACATC+AGG | - | chr2_3:13222986-13223005 | Msa0279380:CDS | 35.0% | |
| AGTCGAAAACAATATGAGAC+GGG | + | chr2_3:13223184-13223203 | None:intergenic | 35.0% | |
| TTTCGACTTCTTAAGAGATC+CGG | - | chr2_3:13223196-13223215 | Msa0279380:intron | 35.0% | |
| ATATGTTCTCCACACAAATG+AGG | + | chr2_3:13223555-13223574 | None:intergenic | 35.0% | |
| TGATGCCTTTCTTATATCTC+GGG | - | chr2_3:13223712-13223731 | Msa0279380:CDS | 35.0% | |
| ACGTTCTTCACAATAGACTT+AGG | - | chr2_3:13223787-13223806 | Msa0279380:intron | 35.0% | |
| ! | TAGGTATGTCAGTCTTATAG+CGG | - | chr2_3:13223822-13223841 | Msa0279380:intron | 35.0% |
| ! | TATGTCGTGACATTTTCAGA+TGG | + | chr2_3:13223914-13223933 | None:intergenic | 35.0% |
| AACACAAGTTAGGGATTTCT+TGG | - | chr2_3:13223938-13223957 | Msa0279380:intron | 35.0% | |
| AGAATGTTTCATAGACCCTT+TGG | - | chr2_3:13224136-13224155 | Msa0279380:intron | 35.0% | |
| GAATGTTTCATAGACCCTTT+GGG | - | chr2_3:13224137-13224156 | Msa0279380:intron | 35.0% | |
| AAACAACATAGGATCCCAAA+GGG | + | chr2_3:13224154-13224173 | None:intergenic | 35.0% | |
| TAAACAACATAGGATCCCAA+AGG | + | chr2_3:13224155-13224174 | None:intergenic | 35.0% | |
| TTCAACTCTTGTGTGTTTAC+AGG | + | chr2_3:13224182-13224201 | None:intergenic | 35.0% | |
| GAGTTGAATATGGCAATGAA+TGG | - | chr2_3:13224194-13224213 | Msa0279380:intron | 35.0% | |
| !! | GTGTCACTTATAATTCCATC+AGG | - | chr2_3:13224233-13224252 | Msa0279380:intron | 35.0% |
| AAATTTGCAACAAGAGGACT+AGG | + | chr2_3:13224347-13224366 | None:intergenic | 35.0% | |
| AGGCCTAAATCAACCTAAGT+TGG | - | chr2_3:13220682-13220701 | Msa0279380:intron | 40.0% | |
| GTCCTAAGATTTGTGCTTCA+TGG | - | chr2_3:13220863-13220882 | Msa0279380:intron | 40.0% | |
| AGCCATGAAGCACAAATCTT+AGG | + | chr2_3:13220868-13220887 | None:intergenic | 40.0% | |
| TGATGGGAAATTCACTTCCA+AGG | - | chr2_3:13221604-13221623 | Msa0279380:CDS | 40.0% | |
| AAATTCACTTCCAAGGTCCA+GGG | - | chr2_3:13221611-13221630 | Msa0279380:CDS | 40.0% | |
| ! | TGATACTTCCTCTTTTTCCC+TGG | + | chr2_3:13221631-13221650 | None:intergenic | 40.0% |
| ACCTCCTTGAATCTAGATAG+AGG | - | chr2_3:13221696-13221715 | Msa0279380:CDS | 40.0% | |
| TGAGCCTCTATCTAGATTCA+AGG | + | chr2_3:13221703-13221722 | None:intergenic | 40.0% | |
| ACAAAACCCAATGATGTTGG+TGG | - | chr2_3:13221746-13221765 | Msa0279380:intron | 40.0% | |
| AAGCTGAGACTTAACCCATA+AGG | + | chr2_3:13221820-13221839 | None:intergenic | 40.0% | |
| ! | TTTTGGCGCCATTAAAGTAG+TGG | + | chr2_3:13221896-13221915 | None:intergenic | 40.0% |
| ACATTTGGTCGACATGTTTC+TGG | - | chr2_3:13221965-13221984 | Msa0279380:CDS | 40.0% | |
| GTCTCTTTCAAGCACTTTGA+TGG | + | chr2_3:13222233-13222252 | None:intergenic | 40.0% | |
| ! | AAGCTCCACTTTGACTTTCT+GGG | + | chr2_3:13222258-13222277 | None:intergenic | 40.0% |
| ! | AAAGCTCCACTTTGACTTTC+TGG | + | chr2_3:13222259-13222278 | None:intergenic | 40.0% |
| TTATGCTACGTACAGATGCA+TGG | - | chr2_3:13222351-13222370 | Msa0279380:CDS | 40.0% | |
| TTCACCTTTAGTGAAACCAC+GGG | - | chr2_3:13222389-13222408 | Msa0279380:intron | 40.0% | |
| AATTCCCGTGGTTTCACTAA+AGG | + | chr2_3:13222396-13222415 | None:intergenic | 40.0% | |
| CGAAGAAAGTAAAATTCCCG+TGG | + | chr2_3:13222408-13222427 | None:intergenic | 40.0% | |
| ! | TATTGCGTACAAGTTGAAGC+TGG | - | chr2_3:13222429-13222448 | Msa0279380:intron | 40.0% |
| ! | TACAAGTTGAAGCTGGTATG+TGG | - | chr2_3:13222436-13222455 | Msa0279380:intron | 40.0% |
| ! | ACAAGTTGAAGCTGGTATGT+GGG | - | chr2_3:13222437-13222456 | Msa0279380:intron | 40.0% |
| ! | GACCTCATTCTTCTTTTTGG+AGG | - | chr2_3:13222499-13222518 | Msa0279380:CDS | 40.0% |
| !! | TCTTTTTGGAGGTTTCCTTC+TGG | - | chr2_3:13222510-13222529 | Msa0279380:CDS | 40.0% |
| AAGTTCCATGAGCCATCTTT+GGG | + | chr2_3:13222755-13222774 | None:intergenic | 40.0% | |
| TCAGTGGTTACATTACCTGA+AGG | - | chr2_3:13222954-13222973 | Msa0279380:CDS | 40.0% | |
| TGGTTACATTACCTGAAGGA+AGG | - | chr2_3:13222958-13222977 | Msa0279380:CDS | 40.0% | |
| ATTACACATCTCCTTCCTTC+AGG | + | chr2_3:13222972-13222991 | None:intergenic | 40.0% | |
| ! | ACTTGCACATCAGGTTGTTA+AGG | - | chr2_3:13222995-13223014 | Msa0279380:CDS | 40.0% |
| !! | TCAGCATCAGCAAAGTATTG+TGG | + | chr2_3:13223062-13223081 | None:intergenic | 40.0% |
| AAAACAATATGAGACGGGAG+AGG | + | chr2_3:13223179-13223198 | None:intergenic | 40.0% | |
| !! | CGTTTTGTGATGGAAATCCA+TGG | - | chr2_3:13223335-13223354 | Msa0279380:intron | 40.0% |
| ATGTGTGCAATTTCATGCCA+TGG | + | chr2_3:13223355-13223374 | None:intergenic | 40.0% | |
| GAAATTGCACACATCTCTAC+TGG | - | chr2_3:13223361-13223380 | Msa0279380:CDS | 40.0% | |
| ! | TGGAAGGAAGTGTAGGAAAA+TGG | + | chr2_3:13223505-13223524 | None:intergenic | 40.0% |
| ! | AATGACATGGAAGGAAGTGT+AGG | + | chr2_3:13223512-13223531 | None:intergenic | 40.0% |
| TATGATGCACCTCATTTGTG+TGG | - | chr2_3:13223543-13223562 | Msa0279380:intron | 40.0% | |
| GAAAGCCCGAGATATAAGAA+AGG | + | chr2_3:13223720-13223739 | None:intergenic | 40.0% | |
| TCAGAGATGAAAAAGCCTGA+TGG | + | chr2_3:13224251-13224270 | None:intergenic | 40.0% | |
| TGCAATATATGCAAGGTCCG+AGG | + | chr2_3:13220385-13220404 | None:intergenic | 45.0% | |
| TTGAGCCACAACAAGTGAAG+TGG | - | chr2_3:13221047-13221066 | Msa0279380:intron | 45.0% | |
| ! | AACCACCACTTCACTTGTTG+TGG | + | chr2_3:13221055-13221074 | None:intergenic | 45.0% |
| GAAATTCACTTCCAAGGTCC+AGG | - | chr2_3:13221610-13221629 | Msa0279380:CDS | 45.0% | |
| GCCTCTATCTAGATTCAAGG+AGG | + | chr2_3:13221700-13221719 | None:intergenic | 45.0% | |
| AAGCTTAAGCAACTCTTCCG+TGG | + | chr2_3:13221784-13221803 | None:intergenic | 45.0% | |
| ! | TTTTCCGCGATGAGTCCTTA+TGG | - | chr2_3:13221802-13221821 | Msa0279380:intron | 45.0% |
| TTTCCGCGATGAGTCCTTAT+GGG | - | chr2_3:13221803-13221822 | Msa0279380:intron | 45.0% | |
| TAACCCATAAGGACTCATCG+CGG | + | chr2_3:13221809-13221828 | None:intergenic | 45.0% | |
| !! | GGTCGACATGTTTCTGGATT+CGG | - | chr2_3:13221971-13221990 | Msa0279380:CDS | 45.0% |
| ! | AGCTCCACTTTGACTTTCTG+GGG | + | chr2_3:13222257-13222276 | None:intergenic | 45.0% |
| GGTTTCTTGGATTGAGCATG+TGG | - | chr2_3:13222660-13222679 | Msa0279380:intron | 45.0% | |
| TTGGATTGAGCATGTGGAAG+TGG | - | chr2_3:13222666-13222685 | Msa0279380:intron | 45.0% | |
| ! | TTGCATTTGGAGCCCAAAGA+TGG | - | chr2_3:13222740-13222759 | Msa0279380:intron | 45.0% |
| GAAGTTCCATGAGCCATCTT+TGG | + | chr2_3:13222756-13222775 | None:intergenic | 45.0% | |
| TTTGCTGATGCTGATGACAG+CGG | - | chr2_3:13223068-13223087 | Msa0279380:CDS | 45.0% | |
| !! | AGACGGGAGAGGTATCAAAA+CGG | + | chr2_3:13223168-13223187 | None:intergenic | 45.0% |
| TGAACCTCAAAACGTCTTGC+CGG | + | chr2_3:13223218-13223237 | None:intergenic | 45.0% | |
| ! | CAGTGGGATACGTTTTGTGA+TGG | - | chr2_3:13223325-13223344 | Msa0279380:intron | 45.0% |
| ! | CCATCTTTGGGAGAAACTAG+AGG | + | chr2_3:13224101-13224120 | None:intergenic | 45.0% |
| ! | CCTCTAGTTTCTCCCAAAGA+TGG | - | chr2_3:13224098-13224117 | Msa0279380:intron | 45.0% |
| AGCCACAACAAGTGAAGTGG+TGG | - | chr2_3:13221050-13221069 | Msa0279380:intron | 50.0% | |
| CTCTCCGCGCTGAAAATGAA+AGG | - | chr2_3:13221241-13221260 | Msa0279380:intron | 50.0% | |
| TCCAAGGTCCAGGGAAAAAG+AGG | - | chr2_3:13221620-13221639 | Msa0279380:CDS | 50.0% | |
| ! | TCCTCTTTTTCCCTGGACCT+TGG | + | chr2_3:13221624-13221643 | None:intergenic | 50.0% |
| CTTCCTAAAAGCTCGACACG+TGG | - | chr2_3:13221669-13221688 | Msa0279380:CDS | 50.0% | |
| ! | CTTCCACGTGTCGAGCTTTT+AGG | + | chr2_3:13221675-13221694 | None:intergenic | 50.0% |
| !! | AACCCAATGATGTTGGTGGC+TGG | - | chr2_3:13221750-13221769 | Msa0279380:CDS | 50.0% |
| GTCCAGCCACCAACATCATT+GGG | + | chr2_3:13221755-13221774 | None:intergenic | 50.0% | |
| AGTCCAGCCACCAACATCAT+TGG | + | chr2_3:13221756-13221775 | None:intergenic | 50.0% | |
| CTTAAGCAACTCTTCCGTGG+CGG | + | chr2_3:13221781-13221800 | None:intergenic | 50.0% | |
| GACTCCCCAGAAAGTCAAAG+TGG | - | chr2_3:13222250-13222269 | Msa0279380:CDS | 50.0% | |
| TTGCTGATGCTGATGACAGC+GGG | - | chr2_3:13223069-13223088 | Msa0279380:CDS | 50.0% | |
| ! | AGATCCGGCAAGACGTTTTG+AGG | - | chr2_3:13223211-13223230 | Msa0279380:intron | 50.0% |
| TGGCTCAAGCTCAAGCTCCT+GGG | + | chr2_3:13221035-13221054 | None:intergenic | 55.0% | |
| TGGAGCCCAAAGATGGCTCA+TGG | - | chr2_3:13222747-13222766 | Msa0279380:CDS | 55.0% | |
| TGCTGATGCTGATGACAGCG+GGG | - | chr2_3:13223070-13223089 | Msa0279380:CDS | 55.0% | |
| ATGCTGATGACAGCGGGGTT+AGG | - | chr2_3:13223075-13223094 | Msa0279380:CDS | 55.0% | |
| CACTGTCAGCAACGAACCTC+TGG | + | chr2_3:13224306-13224325 | None:intergenic | 55.0% | |
| CAGAGGTTCGTTGCTGACAG+TGG | - | chr2_3:13224304-13224323 | Msa0279380:intron | 55.0% | |
| GGTGGTTGGGGTTTGAGCCT+CGG | - | chr2_3:13220365-13220384 | Msa0279380:CDS | 60.0% | |
| GTGGCTCAAGCTCAAGCTCC+TGG | + | chr2_3:13221036-13221055 | None:intergenic | 60.0% | |
| !! | GCGCGGAGAGCATCGTTATC+TGG | + | chr2_3:13221231-13221250 | None:intergenic | 60.0% |
| GGTGGCTGGACTTGCCGCCA+CGG | - | chr2_3:13221764-13221783 | Msa0279380:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13220294 | 13224442 | 13220294 | ID=Msa0279380;Name=Msa0279380 |
| chr2_3 | mRNA | 13220294 | 13224442 | 13220294 | ID=Msa0279380-mRNA-1;Parent=Msa0279380;Name=Msa0279380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.91|0.72|0.58|12|0|615 |
| chr2_3 | exon | 13224438 | 13224442 | 13224438 | ID=Msa0279380-mRNA-1:exon:5679;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13223637 | 13223754 | 13223637 | ID=Msa0279380-mRNA-1:exon:5678;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13223356 | 13223523 | 13223356 | ID=Msa0279380-mRNA-1:exon:5677;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13222912 | 13223139 | 13222912 | ID=Msa0279380-mRNA-1:exon:5676;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13222744 | 13222899 | 13222744 | ID=Msa0279380-mRNA-1:exon:5675;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13222451 | 13222552 | 13222451 | ID=Msa0279380-mRNA-1:exon:5674;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13222167 | 13222370 | 13222167 | ID=Msa0279380-mRNA-1:exon:5673;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13221898 | 13222075 | 13221898 | ID=Msa0279380-mRNA-1:exon:5672;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13221750 | 13221778 | 13221750 | ID=Msa0279380-mRNA-1:exon:5671;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13221504 | 13221728 | 13221504 | ID=Msa0279380-mRNA-1:exon:5670;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13221319 | 13221408 | 13221319 | ID=Msa0279380-mRNA-1:exon:5669;Parent=Msa0279380-mRNA-1 |
| chr2_3 | exon | 13220294 | 13220638 | 13220294 | ID=Msa0279380-mRNA-1:exon:5668;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13224438 | 13224442 | 13224438 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13223637 | 13223754 | 13223637 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13223356 | 13223523 | 13223356 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13222912 | 13223139 | 13222912 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13222744 | 13222899 | 13222744 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13222451 | 13222552 | 13222451 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13222167 | 13222370 | 13222167 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13221898 | 13222075 | 13221898 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13221750 | 13221778 | 13221750 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13221504 | 13221728 | 13221504 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13221319 | 13221408 | 13221319 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| chr2_3 | CDS | 13220294 | 13220638 | 13220294 | ID=Msa0279380-mRNA-1:cds;Parent=Msa0279380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
