AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279400 MtrunA17_Chr2g0292731 88.810 563 52 1 148 710 1 552 0.0 1039
Msa0279400 MtrunA17_Chr2g0292741 86.486 555 59 2 156 710 1 539 0.0 994
Msa0279400 MtrunA17_Chr6g0481041 40.541 740 389 16 1 706 1 723 1.01e-172 512
Msa0279400 MtrunA17_Chr2g0322731 37.377 709 409 15 9 706 81 765 2.15e-144 440
Msa0279400 MtrunA17_Chr4g0024351 36.173 716 408 17 7 706 47 729 2.49e-144 439
Msa0279400 MtrunA17_Chr8g0350321 36.176 727 414 20 9 706 101 806 1.50e-137 424
Msa0279400 MtrunA17_Chr7g0246631 35.912 724 412 17 9 706 77 774 8.10e-137 421
Msa0279400 MtrunA17_Chr1g0203671 34.685 715 413 18 25 706 96 789 3.11e-127 396
Msa0279400 MtrunA17_Chr5g0410711 33.737 744 435 22 1 709 61 781 1.24e-125 392
Msa0279400 MtrunA17_Chr2g0331581 32.847 685 416 13 28 706 143 789 2.87e-117 370
Msa0279400 MtrunA17_Chr6g0472471 33.150 727 404 22 28 706 73 765 6.64e-117 369
Msa0279400 MtrunA17_Chr2g0292761 37.175 616 301 17 103 707 1 541 3.08e-115 357
Msa0279400 MtrunA17_Chr5g0394111 32.803 692 364 17 32 707 41 647 1.01e-104 333
Msa0279400 MtrunA17_Chr7g0224451 36.917 493 237 12 25 509 17 443 9.93e-92 293
Msa0279400 MtrunA17_Chr2g0304191 88.971 136 15 0 230 365 1 136 5.64e-81 253
Msa0279400 MtrunA17_Chr7g0224481 36.939 379 175 9 25 395 17 339 6.77e-65 218
Msa0279400 MtrunA17_Chr7g0224491 38.125 320 160 7 398 706 1 293 1.93e-57 197
Msa0279400 MtrunA17_Chr8g0349941 95.556 45 2 0 465 509 67 111 3.30e-23 95.1
Msa0279400 MtrunA17_Chr2g0319671 32.018 228 131 7 226 449 63 270 4.80e-23 100
Msa0279400 MtrunA17_Chr6g0460611 45.055 91 50 0 85 175 2 92 2.41e-22 92.0
Msa0279400 MtrunA17_Chr5g0419821 42.308 130 70 4 23 149 32 159 3.97e-19 85.5
Msa0279400 MtrunA17_Chr2g0319681 27.074 229 159 4 482 706 1 225 2.05e-17 82.4
Msa0279400 MtrunA17_Chr7g0224431 32.468 154 62 3 249 401 4 116 1.08e-12 65.5
Msa0279400 MtrunA17_Chr2g0319691 31.579 114 75 2 336 449 1 111 4.20e-12 64.7
Msa0279400 MtrunA17_Chr2g0319701 26.486 185 116 5 533 706 48 223 6.73e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279400 AT1G73360.1 38.959 711 385 14 20 706 28 713 5.47e-161 482
Msa0279400 AT1G17920.2 38.372 688 384 15 28 706 25 681 2.84e-149 451
Msa0279400 AT1G17920.1 38.372 688 384 15 28 706 25 681 2.84e-149 451
Msa0279400 AT3G03260.1 38.483 725 386 17 7 706 5 694 7.53e-147 444
Msa0279400 AT1G05230.3 36.790 704 400 14 8 706 51 714 1.46e-146 444
Msa0279400 AT1G05230.8 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.4 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.9 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.10 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.7 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.11 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.2 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.6 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.5 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT1G05230.1 36.686 706 400 15 8 706 51 716 1.44e-144 439
Msa0279400 AT4G04890.2 36.712 730 409 17 2 706 34 735 2.66e-143 437
Msa0279400 AT4G04890.1 36.712 730 409 17 2 706 34 735 2.66e-143 437
Msa0279400 AT4G21750.2 36.427 722 408 15 19 706 53 757 6.24e-140 429
Msa0279400 AT4G21750.1 36.427 722 408 15 19 706 53 757 6.24e-140 429
Msa0279400 AT4G21750.3 36.427 722 408 15 19 706 53 757 6.24e-140 429
Msa0279400 AT4G21750.4 36.427 722 408 15 19 706 53 757 6.24e-140 429
Msa0279400 AT5G17320.1 35.180 722 411 18 17 706 19 715 9.54e-127 393
Msa0279400 AT4G00730.1 34.851 703 412 18 20 706 126 798 4.00e-126 394
Msa0279400 AT3G61150.1 33.379 731 428 21 11 706 97 803 1.33e-122 385
Msa0279400 AT1G05230.12 36.021 583 337 10 8 586 51 601 2.77e-120 373
Msa0279400 AT3G03260.2 39.893 559 302 12 7 556 5 538 5.84e-118 365
Msa0279400 AT1G34650.1 35.443 711 394 20 32 706 24 705 5.98e-118 370
Msa0279400 AT5G52170.3 34.298 691 369 19 28 706 61 678 4.01e-115 362
Msa0279400 AT5G52170.1 34.298 691 369 19 28 706 61 678 4.01e-115 362
Msa0279400 AT5G52170.2 34.339 696 367 20 28 706 61 683 1.27e-114 360
Msa0279400 AT5G46880.3 31.607 753 430 21 8 710 93 810 7.53e-110 352
Msa0279400 AT5G46880.1 31.607 753 430 21 8 710 93 810 7.53e-110 352
Msa0279400 AT5G46880.2 31.607 753 430 21 8 710 93 810 7.53e-110 352
Msa0279400 AT2G32370.1 32.192 730 414 22 8 704 37 718 5.38e-106 339
Msa0279400 AT1G79840.3 32.853 694 401 19 25 706 44 684 5.13e-105 335
Msa0279400 AT1G79840.6 32.853 694 401 19 25 706 44 684 5.13e-105 335
Msa0279400 AT1G79840.1 32.853 694 401 19 25 706 102 742 2.09e-104 335
Msa0279400 AT1G79840.2 32.853 694 401 19 25 706 131 771 7.35e-104 335
Msa0279400 AT4G17710.1 30.496 705 389 18 23 710 87 707 2.89e-97 316
Msa0279400 AT4G25530.1 29.677 711 443 17 8 706 17 682 1.26e-88 292
Msa0279400 AT1G79840.4 33.099 568 323 15 25 584 102 620 8.82e-88 288
Msa0279400 AT4G00730.2 35.763 439 249 10 20 447 126 542 6.39e-81 268
Msa0279400 AT1G79840.5 32.812 448 246 13 25 464 102 502 3.19e-60 211
Msa0279400 AT5G07260.1 20.283 636 394 15 83 706 3 537 6.18e-25 110
Msa0279400 AT5G07260.2 20.253 632 394 15 83 706 3 532 6.26e-25 110

Find 163 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCAATCCTGAATATT+TGG 0.136860 2_3:+13261905 None:intergenic
CCAAAGAACAATCACTTTAA+AGG 0.153190 2_3:-13261951 Msa0279400:CDS
AAATTATGGATGTGGCTTTA+AGG 0.186919 2_3:-13259483 Msa0279400:CDS
ATGGACTAGTGCTCAGAATT+TGG 0.187958 2_3:+13259329 None:intergenic
ATCGCTTTGTAGGATCTTTA+AGG 0.190512 2_3:+13260159 None:intergenic
TAGTGGGATGGTCTTTCTTA+TGG 0.230215 2_3:-13259811 Msa0279400:CDS
GTGTACCCATCTTGAGTATT+TGG 0.232783 2_3:+13262005 None:intergenic
ACTATCAAAGTGTTTGAAAT+AGG 0.250867 2_3:-13261566 Msa0279400:CDS
AAACCAAAACTTGATTTGTT+TGG 0.252374 2_3:+13263217 None:intergenic
TTTGGAGATTTGACCCAAAA+AGG 0.264891 2_3:+13262023 None:intergenic
CCTTTAAAGTGATTGTTCTT+TGG 0.271566 2_3:+13261951 None:intergenic
AACCAAAACTTGATTTGTTT+GGG 0.288547 2_3:+13263218 None:intergenic
GAAGAATCTTCCAAATATTC+AGG 0.291428 2_3:-13261915 Msa0279400:CDS
GTTACCTGTGATCGCTTTGT+AGG 0.304101 2_3:+13260149 None:intergenic
AGCCCAAACAAATCAAGTTT+TGG 0.306856 2_3:-13263220 Msa0279400:CDS
TATTCCTCCCTTCAAGTGTT+TGG 0.321521 2_3:+13260402 None:intergenic
GTTGGCGACTATAATTTATA+CGG 0.324947 2_3:-13260642 Msa0279400:CDS
TGACGTCGTTCTGCCTCGTC+TGG 0.329592 2_3:+13263266 None:intergenic
AAAGCTCCATCTCGACTTCC+TGG 0.342734 2_3:+13261539 None:intergenic
AATTATGGATGTGGCTTTAA+GGG 0.342930 2_3:-13259482 Msa0279400:CDS
CGGAGCTGAAAGCTGGATTA+AGG 0.349348 2_3:-13260622 Msa0279400:CDS
CCTCCTATGGTTTCTTCAAC+AGG 0.351635 2_3:+13260549 None:intergenic
TGAAATGCAGTTGCCATGAT+AGG 0.356217 2_3:+13259750 None:intergenic
CAATGCTATCAAGAGTTAAA+TGG 0.356804 2_3:+13260303 None:intergenic
TCAGCTTTGGTAACAATTGT+AGG 0.366355 2_3:+13261590 None:intergenic
TTACTGCTGCTACCACCATT+TGG 0.373536 2_3:-13260214 Msa0279400:CDS
CCAAATCTTAATGCACCATT+TGG 0.373891 2_3:-13259397 Msa0279400:CDS
TCGAGATGGAGCTTTATTAC+TGG 0.373995 2_3:-13261531 Msa0279400:intron
TGGACTAGTGCTCAGAATTT+GGG 0.378235 2_3:+13259330 None:intergenic
CACTTTGATAGTTTCAGCTT+TGG 0.378308 2_3:+13261577 None:intergenic
ATTAGTAACTTTCAAGATGA+TGG 0.390244 2_3:-13264355 Msa0279400:CDS
CTCTATACATGTAATGTGTA+TGG 0.392878 2_3:+13260670 None:intergenic
CCAAATGGTGCATTAAGATT+TGG 0.397130 2_3:+13259397 None:intergenic
GTCAATTGGCTGTGAAAGTT+GGG 0.402996 2_3:-13263247 Msa0279400:CDS
ATGGGAGGTGGCGGTGAGTC+TGG 0.407588 2_3:-13264388 Msa0279400:CDS
GAGTGCTCAAATCATGTTCA+TGG 0.409107 2_3:-13262176 Msa0279400:CDS
ACAAAACCATTTGGAAGGAT+TGG 0.409375 2_3:+13259439 None:intergenic
TTAGAATAGTAGCTGCCAAT+TGG 0.411318 2_3:+13259257 None:intergenic
CACTCATAAACCGTTCGGTT+TGG 0.412582 2_3:+13262194 None:intergenic
GAACAAATTACAAAACCATT+TGG 0.415955 2_3:+13259430 None:intergenic
AGCACTTGGTCAACTGCATA+TGG 0.416823 2_3:+13259310 None:intergenic
CCACAATTTGCGAAGCTTGT+GGG 0.416831 2_3:-13262523 Msa0279400:CDS
CGTCAATTGGCTGTGAAAGT+TGG 0.419536 2_3:-13263248 Msa0279400:CDS
GAAATTGCACACATTTCAAA+TGG 0.421250 2_3:-13259775 Msa0279400:CDS
AGCGGAGGTAAGACGTTTGT+AGG 0.421913 2_3:+13264321 None:intergenic
AGAATGTGCGAGAGATCTTT+AGG 0.428437 2_3:-13260591 Msa0279400:CDS
CGAGGCAGAACGACGTCAAT+TGG 0.430389 2_3:-13263261 Msa0279400:CDS
CGAGAAAGAGGTGCAGTGTT+TGG 0.431308 2_3:+13261285 None:intergenic
AAATCTCCAAATACTCAAGA+TGG 0.432047 2_3:-13262011 Msa0279400:CDS
GAAGATTAGTGGCATAGATT+TGG 0.434141 2_3:-13261886 Msa0279400:CDS
TCAGGATTGGTGAAGATTAG+TGG 0.444549 2_3:-13261897 Msa0279400:CDS
TAGAATAGTAGCTGCCAATT+GGG 0.446699 2_3:+13259258 None:intergenic
ATTTATACGGAGCTGAAAGC+TGG 0.450930 2_3:-13260629 Msa0279400:CDS
AGATGCTGCAATGGATGAAT+TGG 0.453548 2_3:-13262069 Msa0279400:CDS
TCTCCTGCACGAAATGTTGA+TGG 0.453739 2_3:+13262477 None:intergenic
TACTTATATCAACACCCAAT+TGG 0.455805 2_3:-13259272 Msa0279400:CDS
GCAGTAACAACAGTGCCATT+TGG 0.456929 2_3:+13260230 None:intergenic
CACAATTTGCGAAGCTTGTG+GGG 0.460810 2_3:-13262522 Msa0279400:CDS
TTGAGAAATGGATTACTCAA+TGG 0.460842 2_3:-13264407 None:intergenic
AAAGTGTGATTAACCTCCTA+TGG 0.462791 2_3:+13260536 None:intergenic
CAACTGCATTTCAATTATCA+AGG 0.467731 2_3:-13259740 Msa0279400:intron
CATCTTCCACATTAAGCACT+TGG 0.467910 2_3:+13259296 None:intergenic
TCATAAACCGTTCGGTTTGG+TGG 0.470954 2_3:+13262197 None:intergenic
GAACAAGAGAACTCTGTTGA+AGG 0.473464 2_3:-13263192 Msa0279400:intron
CATTTAACTCTTGATAGCAT+TGG 0.474351 2_3:-13260302 Msa0279400:CDS
GAAAAGTTGATGCTGGTGTA+TGG 0.477684 2_3:-13261341 Msa0279400:CDS
CTGCACCTCTTTCTCGTGGT+TGG 0.478289 2_3:-13261278 Msa0279400:CDS
TAACAACAGTGCCATTTGGC+TGG 0.481596 2_3:+13260234 None:intergenic
TCAGTGATCCAAACACTTGA+AGG 0.482426 2_3:-13260410 Msa0279400:intron
TTAAGAGCTTGCTCAAACTC+CGG 0.486029 2_3:+13262260 None:intergenic
TTGAGCACTCATAAACCGTT+CGG 0.491484 2_3:+13262189 None:intergenic
TGTGAATGCTTAACAATGCC+TGG 0.491755 2_3:-13260341 Msa0279400:CDS
TGATGGTCTTCCACAGGAAA+TGG 0.495341 2_3:+13262494 None:intergenic
CCCACAAGCTTCGCAAATTG+TGG 0.495588 2_3:+13262523 None:intergenic
ATGTGTGCAATTTCATGCAT+TGG 0.495739 2_3:+13259784 None:intergenic
TGAGAAATGGATTACTCAAT+GGG 0.495986 2_3:-13264406 None:intergenic
GTGTTTGAAATAGGTTCGCC+AGG 0.496409 2_3:-13261557 Msa0279400:CDS
TCATTCGTGAAATGCCTCAT+GGG 0.496695 2_3:-13261236 Msa0279400:CDS
GAGTTACCAATCCTTCCAAA+TGG 0.500630 2_3:-13259445 Msa0279400:CDS
TACATGTATAGAGATCTTGT+TGG 0.502405 2_3:-13260660 Msa0279400:CDS
CAGCTTTGGTAACAATTGTA+GGG 0.502451 2_3:+13261591 None:intergenic
GGTTGGCATGTTTCTCGACT+CGG 0.505106 2_3:-13261865 Msa0279400:intron
TATATAATGTATGATCCTAC+AGG 0.508050 2_3:+13259523 None:intergenic
CGTGGTTGGAAACATCCCTC+TGG 0.513481 2_3:-13261264 Msa0279400:CDS
GTCGTTCTGCCTCGTCTGGA+TGG 0.514221 2_3:+13263270 None:intergenic
CGAAAATCTCAAAATAAAAG+AGG 0.514839 2_3:-13262555 Msa0279400:CDS
ATTTCAAATGGACCCTATCA+TGG 0.514869 2_3:-13259763 Msa0279400:CDS
TTAACTCTTGATAGCATTGG+TGG 0.517292 2_3:-13260299 Msa0279400:CDS
CTGCAATGGATGAATTGGTT+AGG 0.518596 2_3:-13262064 Msa0279400:CDS
GATGATACAAGCCAGCCAAA+TGG 0.520622 2_3:-13260245 Msa0279400:CDS
CTTAACAATGCCTGGTCAAG+TGG 0.522028 2_3:-13260333 Msa0279400:CDS
ATCTTCCAAATATTCAGGAT+TGG 0.522094 2_3:-13261910 Msa0279400:CDS
AAATTACAAAACCATTTGGA+AGG 0.523071 2_3:+13259434 None:intergenic
AGGTGCAGTGTTTGGTCGAG+AGG 0.523583 2_3:+13261293 None:intergenic
CATCCCTACTCAGAGGCAAA+TGG 0.525201 2_3:-13259572 Msa0279400:CDS
TCACCATTTGCCTCTGAGTA+GGG 0.526700 2_3:+13259569 None:intergenic
AACTCTTGATAGCATTGGTG+GGG 0.529682 2_3:-13260297 Msa0279400:CDS
ACTATGAGGAGAGGTGTGCT+AGG 0.529898 2_3:-13262146 Msa0279400:CDS
GCCACAATTTGCGAAGCTTG+TGG 0.529984 2_3:-13262524 Msa0279400:CDS
GAGGTAAGACGTTTGTAGGA+AGG 0.532797 2_3:+13264325 None:intergenic
ATTAGTGGCATAGATTTGGT+TGG 0.532831 2_3:-13261882 Msa0279400:CDS
AAAACTTTCTGAGCAGGCAG+AGG 0.539007 2_3:+13260188 None:intergenic
TGGCTGGCTTGTATCATCGT+CGG 0.539237 2_3:+13260250 None:intergenic
TAACTCTTGATAGCATTGGT+GGG 0.540658 2_3:-13260298 Msa0279400:CDS
GAAATGCAGTTGCCATGATA+GGG 0.544552 2_3:+13259751 None:intergenic
ATCATTCGTGAAATGCCTCA+TGG 0.548977 2_3:-13261237 Msa0279400:CDS
GCATCTGACGGTATTGAAGA+TGG 0.549299 2_3:-13259373 Msa0279400:CDS
TTTCTGATGAAGTTTCATGA+AGG 0.549807 2_3:-13263300 Msa0279400:intron
GGTCACTTGGGTTGAACATG+TGG 0.552782 2_3:-13260709 Msa0279400:CDS
ATACCGTCAGATGCTCCAAA+TGG 0.553819 2_3:+13259382 None:intergenic
GAAAGTTTCACTTCTCCTGT+AGG 0.556978 2_3:-13259538 Msa0279400:CDS
TACTGCAGAAAAGTTGATGC+TGG 0.557695 2_3:-13261348 Msa0279400:CDS
ATTATGGATGTGGCTTTAAG+GGG 0.559199 2_3:-13259481 Msa0279400:CDS
GATAAAGCTTGCTGATAGAA+TGG 0.559844 2_3:-13260375 Msa0279400:CDS
TTCAAGTATGGATGTTTGAG+CGG 0.568957 2_3:+13264303 None:intergenic
ATGTGAAGGATGCTCTTATG+AGG 0.569555 2_3:-13259234 Msa0279400:CDS
TTGGGTTGAACATGTGGAAG+TGG 0.571125 2_3:-13260703 Msa0279400:CDS
TGGTTAAACTCCACTTGACC+AGG 0.571210 2_3:+13260323 None:intergenic
TTCATGGTAATCTAACTATG+AGG 0.572450 2_3:-13262160 Msa0279400:CDS
AGATCCTACAAAGCGATCAC+AGG 0.573425 2_3:-13260153 Msa0279400:intron
TGTTTCCAACCACGAGAAAG+AGG 0.576681 2_3:+13261273 None:intergenic
AGATGGCTCGTTGTTAACAT+TGG 0.578589 2_3:-13259356 Msa0279400:CDS
AGCTACTATTCTAAATGTGA+AGG 0.578993 2_3:-13259248 Msa0279400:CDS
AGACCATCAACATTTCGTGC+AGG 0.579781 2_3:-13262480 Msa0279400:CDS
TCTGCATGTAGCTTGCAAGA+AGG 0.582722 2_3:+13262297 None:intergenic
AATCTCCAAATACTCAAGAT+GGG 0.583747 2_3:-13262010 Msa0279400:CDS
AAAAGTTGATGCTGGTGTAT+GGG 0.585328 2_3:-13261340 Msa0279400:CDS
AGCAGGCAGAGGGAGCCAAA+TGG 0.585985 2_3:+13260199 None:intergenic
AAATGTTGATGGTCTTCCAC+AGG 0.587353 2_3:+13262488 None:intergenic
GATTACTCAATGGGAGGTGG+CGG 0.589387 2_3:-13264397 Msa0279400:CDS
CTATGAGGAGAGGTGTGCTA+GGG 0.589969 2_3:-13262145 Msa0279400:CDS
TGAAATTCCACCAAACCGAA+CGG 0.595042 2_3:-13262204 Msa0279400:CDS
ATGGATTACTCAATGGGAGG+TGG 0.596619 2_3:-13264400 Msa0279400:CDS
ATGGTGCATTAAGATTTGGT+TGG 0.601403 2_3:+13259401 None:intergenic
ATCACCATTTGCCTCTGAGT+AGG 0.601759 2_3:+13259568 None:intergenic
AACACTGCACCTCTTTCTCG+TGG 0.603163 2_3:-13261282 Msa0279400:CDS
GGTTCGCCAGGAAGTCGAGA+TGG 0.603521 2_3:-13261545 Msa0279400:CDS
CAGTGATCCAAACACTTGAA+GGG 0.609013 2_3:-13260409 Msa0279400:CDS
CATTCGTGAAATGCCTCATG+GGG 0.609503 2_3:-13261235 Msa0279400:CDS
AAACTTTCTGAGCAGGCAGA+GGG 0.610006 2_3:+13260189 None:intergenic
AAATGCTCAGCTGAAACAAG+AGG 0.615067 2_3:-13262444 Msa0279400:intron
AAGTATGGATGTTTGAGCGG+AGG 0.615778 2_3:+13264306 None:intergenic
TGGTCTTCCACAGGAAATGG+TGG 0.617088 2_3:+13262497 None:intergenic
TCAAGTTGTAGATGCTGCAA+TGG 0.619732 2_3:-13262078 Msa0279400:CDS
GCACCATTTGGAGCATCTGA+CGG 0.621671 2_3:-13259385 Msa0279400:CDS
GCAGAAAGAGATAACACTAC+CGG 0.621791 2_3:-13262279 Msa0279400:CDS
GTTCTGCCTCGTCTGGATGG+TGG 0.624308 2_3:+13263273 None:intergenic
ATACCTGTTGAAGAAACCAT+AGG 0.625785 2_3:-13260552 Msa0279400:CDS
AGGCAGAGGGAGCCAAATGG+TGG 0.636325 2_3:+13260202 None:intergenic
AATTCGCGAGGCCTCACTAG+AGG 0.637219 2_3:+13261384 None:intergenic
CCTGTTGAAGAAACCATAGG+AGG 0.639101 2_3:-13260549 Msa0279400:intron
TCACGAATGATGCATCCAGA+GGG 0.641603 2_3:+13261249 None:intergenic
CTGGCTTGTATCATCGTCGG+TGG 0.642130 2_3:+13260253 None:intergenic
ACAATTTGCGAAGCTTGTGG+GGG 0.652499 2_3:-13262521 Msa0279400:CDS
TTCACGAATGATGCATCCAG+AGG 0.657086 2_3:+13261248 None:intergenic
GGTAATCTAACTATGAGGAG+AGG 0.673701 2_3:-13262155 Msa0279400:CDS
GGAATGCCACCATCCAGACG+AGG 0.674051 2_3:-13263279 Msa0279400:CDS
CGAATGATGTTAAATTCGCG+AGG 0.685235 2_3:+13261372 None:intergenic
TGATCCAAACACTTGAAGGG+AGG 0.696996 2_3:-13260406 Msa0279400:CDS
GAAATGGATTACTCAATGGG+AGG 0.699453 2_3:-13264403 Msa0279400:CDS
AGTCATTCATCCCTACTCAG+AGG 0.722493 2_3:-13259579 Msa0279400:CDS
ATTCGTGAAATGCCTCATGG+GGG 0.745536 2_3:-13261234 Msa0279400:CDS
AGTTGACCAAGTGCTTAATG+TGG 0.750936 2_3:-13259302 Msa0279400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATATATAAAAAAATA+AGG + chr2_3:13259832-13259851 None:intergenic 0.0%
!!! AGTTTTTTTTTTTTTTTTTG+TGG - chr2_3:13259689-13259708 Msa0279400:intron 10.0%
!!! TGTTTTTATCTATAATTTTT+CGG - chr2_3:13261883-13261902 Msa0279400:CDS 10.0%
!!! AAAAAAAGCATTTAAAATTT+GGG + chr2_3:13262186-13262205 None:intergenic 10.0%
!! AAAAAGAATCTAATATAATT+TGG + chr2_3:13262823-13262842 None:intergenic 10.0%
!!! TATATATACTAAACATTTTT+AGG - chr2_3:13262895-13262914 Msa0279400:intron 10.0%
!! TAATTAATTATATAAGTGAT+TGG + chr2_3:13264009-13264028 None:intergenic 10.0%
!!! AATTAATTATTTTTTTCATG+TGG - chr2_3:13264020-13264039 Msa0279400:intron 10.0%
!!! TATTCAATTTTTGATTTTGA+AGG - chr2_3:13259402-13259421 Msa0279400:CDS 15.0%
!!! TATTCAATTTTTGATTTTGA+AGG - chr2_3:13259402-13259421 Msa0279400:CDS 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - chr2_3:13259692-13259711 Msa0279400:intron 15.0%
!! TATTTCAAACCTATATAAAA+AGG + chr2_3:13259862-13259881 None:intergenic 15.0%
!! TACTAACTATATTTAATGTA+TGG - chr2_3:13259999-13260018 Msa0279400:intron 15.0%
!!! GTTTTCTATTAGTAATTTTA+TGG + chr2_3:13260673-13260692 None:intergenic 15.0%
!! CCAAATTTACAAATATAATT+AGG + chr2_3:13261278-13261297 None:intergenic 15.0%
!! CCTAATTATATTTGTAAATT+TGG - chr2_3:13261275-13261294 Msa0279400:CDS 15.0%
!!! GATATATAACTCATTTTTAT+AGG - chr2_3:13261992-13262011 Msa0279400:CDS 15.0%
!!! CAAAAAAAGCATTTAAAATT+TGG + chr2_3:13262187-13262206 None:intergenic 15.0%
!!! CAAATTTTAAATGCTTTTTT+TGG - chr2_3:13262185-13262204 Msa0279400:CDS 15.0%
!!! AAGAATTATTTTAAGCTAAA+AGG - chr2_3:13262659-13262678 Msa0279400:intron 15.0%
!! GGATATTAAAAATAAAAGAT+CGG - chr2_3:13262680-13262699 Msa0279400:intron 15.0%
!!! TAATATAATTTGGAGTATAA+GGG + chr2_3:13262813-13262832 None:intergenic 15.0%
!! AGCTAAATATAAAATTTACA+AGG + chr2_3:13263159-13263178 None:intergenic 15.0%
!!! AGTTCACATATAATTTTTAA+TGG - chr2_3:13263769-13263788 Msa0279400:intron 15.0%
!!! TGTTAATAATTTTGTTATAG+TGG - chr2_3:13263797-13263816 Msa0279400:intron 15.0%
!!! GTTAATAATTTTGTTATAGT+GGG - chr2_3:13263798-13263817 Msa0279400:intron 15.0%
!!! AGCATAAATTTTAAAAGAAA+TGG + chr2_3:13263917-13263936 None:intergenic 15.0%
!!! AAGATTACTCATTTTGTTAA+CGG - chr2_3:13259349-13259368 Msa0279400:CDS 20.0%
!!! TTTTGAGTTTTTGATTTTGA+AGG - chr2_3:13259517-13259536 Msa0279400:CDS 20.0%
!! CAAAAAAAAAAAAAAGGTGA+TGG + chr2_3:13259617-13259636 None:intergenic 20.0%
!!! CATCACCTTTTTTTTTTTTT+TGG - chr2_3:13259615-13259634 Msa0279400:intron 20.0%
!! CCAAACCAAAAAAAAAAAAA+AGG + chr2_3:13259623-13259642 None:intergenic 20.0%
!!! CCTTTTTTTTTTTTTTGGTT+TGG - chr2_3:13259620-13259639 Msa0279400:intron 20.0%
!!! TTCACAAAACCTTTTTATAT+AGG - chr2_3:13259850-13259869 Msa0279400:intron 20.0%
!!! TGTTTTAATTTTCCTTTGTT+TGG - chr2_3:13259944-13259963 Msa0279400:intron 20.0%
!!! TTCGAAGAATTAATTTTGTA+TGG - chr2_3:13260030-13260049 Msa0279400:intron 20.0%
!!! GTTGAATTTAAAATCATGAA+TGG - chr2_3:13260052-13260071 Msa0279400:intron 20.0%
!! ACGATGAAATTAAACTAAAA+TGG + chr2_3:13260087-13260106 None:intergenic 20.0%
!! CTTAAACACTTATGAATATA+TGG - chr2_3:13260136-13260155 Msa0279400:intron 20.0%
!!! ATTTTGACTATAAAGTGAAA+AGG + chr2_3:13260468-13260487 None:intergenic 20.0%
!! AACTTATTCAAATATCCAAA+TGG + chr2_3:13260503-13260522 None:intergenic 20.0%
!! ATATAAAATTATTAGCACCA+AGG + chr2_3:13260976-13260995 None:intergenic 20.0%
!! ATAATTAGGTATTTATGCAT+GGG + chr2_3:13261264-13261283 None:intergenic 20.0%
!! TATAATTAGGTATTTATGCA+TGG + chr2_3:13261265-13261284 None:intergenic 20.0%
!! TCACAAAATATTAATGAAAG+AGG + chr2_3:13261941-13261960 None:intergenic 20.0%
!!! TGGGAAAAATTTTTATAATC+AGG + chr2_3:13262167-13262186 None:intergenic 20.0%
!!! TATATTTCTAAGAGAATTGA+TGG - chr2_3:13262435-13262454 Msa0279400:intron 20.0%
!! ATATGGATATAATTTAGGAA+AGG + chr2_3:13262514-13262533 None:intergenic 20.0%
!!! TAGTTTAACTTCTGTTTTTA+GGG - chr2_3:13262720-13262739 Msa0279400:intron 20.0%
!!! TTTTTCTTGGTTGTATATAT+GGG - chr2_3:13262779-13262798 Msa0279400:intron 20.0%
!!! CTAATATAATTTGGAGTATA+AGG + chr2_3:13262814-13262833 None:intergenic 20.0%
!! AATAGATGAATAGAGATATT+TGG + chr2_3:13263134-13263153 None:intergenic 20.0%
!! TTATAGAGTAAACAATCATT+TGG + chr2_3:13263708-13263727 None:intergenic 20.0%
! ATTAGTAACTTTCAAGATGA+TGG - chr2_3:13259270-13259289 Msa0279400:CDS 25.0%
!!! GTAATCTTACTTTTCAAGTA+TGG + chr2_3:13259337-13259356 None:intergenic 25.0%
!!! GGTTTGGTACAATTTTTTTT+TGG - chr2_3:13259636-13259655 Msa0279400:intron 25.0%
!!! TGGTACAATTTTTTTTTGGT+TGG - chr2_3:13259640-13259659 Msa0279400:intron 25.0%
!!! TTTTTTTTTTTTGTGGTGGT+CGG - chr2_3:13259696-13259715 Msa0279400:intron 25.0%
! GATAACGCATAATATATACA+AGG + chr2_3:13259737-13259756 None:intergenic 25.0%
! ATATATGGAAGCTAATTAGA+TGG - chr2_3:13260151-13260170 Msa0279400:intron 25.0%
! AGATGGATATGTATTTAAAG+TGG - chr2_3:13260168-13260187 Msa0279400:CDS 25.0%
!! GATATAGCCTTTTTAATAAG+TGG + chr2_3:13260216-13260235 None:intergenic 25.0%
!!! AACCAAAACTTGATTTGTTT+GGG + chr2_3:13260410-13260429 None:intergenic 25.0%
!!! AAACCAAAACTTGATTTGTT+TGG + chr2_3:13260411-13260430 None:intergenic 25.0%
! AATTTGAGTAAACATCCATT+TGG - chr2_3:13260485-13260504 Msa0279400:intron 25.0%
! GGATATTTGAATAAGTTAGA+AGG - chr2_3:13260506-13260525 Msa0279400:intron 25.0%
! TATTTGAATAAGTTAGAAGG+TGG - chr2_3:13260509-13260528 Msa0279400:intron 25.0%
!!! GATTGTGTTTTTTTTTCTTC+AGG - chr2_3:13260701-13260720 Msa0279400:CDS 25.0%
! ATTACACATGCTTTCATATA+CGG - chr2_3:13260783-13260802 Msa0279400:intron 25.0%
!!! GTGTAGTTTTTGAAAAATCA+CGG + chr2_3:13260850-13260869 None:intergenic 25.0%
! AAAAACTACACTATCTATCA+TGG - chr2_3:13260859-13260878 Msa0279400:intron 25.0%
! TATTAGCACTAAGCATATAT+TGG + chr2_3:13260919-13260938 None:intergenic 25.0%
! CGAAAATCTCAAAATAAAAG+AGG - chr2_3:13261070-13261089 Msa0279400:intron 25.0%
!!! ACTCATTTTTATAGGTCAAA+TGG - chr2_3:13262000-13262019 Msa0279400:CDS 25.0%
!! ACTATCAAAGTGTTTGAAAT+AGG - chr2_3:13262059-13262078 Msa0279400:CDS 25.0%
!!! GTAGTTTAACTTCTGTTTTT+AGG - chr2_3:13262719-13262738 Msa0279400:intron 25.0%
!!! TTTCCTATTTCTCTTTTTCT+TGG - chr2_3:13262766-13262785 Msa0279400:intron 25.0%
!! CTTTTTCTTGGTTGTATATA+TGG - chr2_3:13262778-13262797 Msa0279400:intron 25.0%
!!! TAAACATTTTTAGGTCACTT+GGG - chr2_3:13262904-13262923 Msa0279400:intron 25.0%
! ATGAATAGAGATATTTGGAA+GGG + chr2_3:13263129-13263148 None:intergenic 25.0%
!! TTATAATTTAGAGCAAACTG+TGG - chr2_3:13263509-13263528 Msa0279400:intron 25.0%
!!! ATAATTTTGTTATAGTGGGA+TGG - chr2_3:13263802-13263821 Msa0279400:intron 25.0%
! TATATACCGAACAATTTCTA+GGG + chr2_3:13263975-13263994 None:intergenic 25.0%
! TATATAATGTATGATCCTAC+AGG + chr2_3:13264105-13264124 None:intergenic 25.0%
! TCCAACTGATAGAAAAATTA+TGG - chr2_3:13264128-13264147 Msa0279400:intron 25.0%
!! TCCATAATTTTTCTATCAGT+TGG + chr2_3:13264132-13264151 None:intergenic 25.0%
! TGATAGAAAAATTATGGATG+TGG - chr2_3:13264134-13264153 Msa0279400:intron 25.0%
! AAATTACAAAACCATTTGGA+AGG + chr2_3:13264194-13264213 None:intergenic 25.0%
! GAACAAATTACAAAACCATT+TGG + chr2_3:13264198-13264217 None:intergenic 25.0%
!! AAAAAAAAAGGTGATGGACT+TGG + chr2_3:13259611-13259630 None:intergenic 30.0%
!!! TTTTTTTTTTTGTGGTGGTC+GGG - chr2_3:13259697-13259716 Msa0279400:intron 30.0%
CATAATATATACAAGGTCCA+GGG + chr2_3:13259730-13259749 None:intergenic 30.0%
AAAGGAATTAAGCCAAACAA+AGG + chr2_3:13259959-13259978 None:intergenic 30.0%
! TTTGTTTGGCTTAATTCCTT+TGG - chr2_3:13259958-13259977 Msa0279400:intron 30.0%
GACTGAACCACTTATTAAAA+AGG - chr2_3:13260206-13260225 Msa0279400:CDS 30.0%
TTTCTGATGAAGTTTCATGA+AGG - chr2_3:13260325-13260344 Msa0279400:CDS 30.0%
AAGCATATATTGGTATCATG+TGG + chr2_3:13260909-13260928 None:intergenic 30.0%
TTCATGGTAATCTAACTATG+AGG - chr2_3:13261465-13261484 Msa0279400:intron 30.0%
AAATCTCCAAATACTCAAGA+TGG - chr2_3:13261614-13261633 Msa0279400:CDS 30.0%
AATCTCCAAATACTCAAGAT+GGG - chr2_3:13261615-13261634 Msa0279400:intron 30.0%
!! CCTTTAAAGTGATTGTTCTT+TGG + chr2_3:13261677-13261696 None:intergenic 30.0%
CCAAAGAACAATCACTTTAA+AGG - chr2_3:13261674-13261693 Msa0279400:intron 30.0%
GAAGAATCTTCCAAATATTC+AGG - chr2_3:13261710-13261729 Msa0279400:intron 30.0%
ATCTTCCAAATATTCAGGAT+TGG - chr2_3:13261715-13261734 Msa0279400:intron 30.0%
! ATATTTTATCACCTCTAGTG+AGG - chr2_3:13262230-13262249 Msa0279400:CDS 30.0%
GGAGGATATGGATATAATTT+AGG + chr2_3:13262519-13262538 None:intergenic 30.0%
CGGCTAAGAAGAAATTTAAT+TGG - chr2_3:13262548-13262567 Msa0279400:CDS 30.0%
AAGATCGGAATTGTCTTAAT+AGG - chr2_3:13262695-13262714 Msa0279400:intron 30.0%
AGATCGGAATTGTCTTAATA+GGG - chr2_3:13262696-13262715 Msa0279400:intron 30.0%
CAACCAAGAAAAAGAGAAAT+AGG + chr2_3:13262772-13262791 None:intergenic 30.0%
!!! CTAAACATTTTTAGGTCACT+TGG - chr2_3:13262903-13262922 Msa0279400:intron 30.0%
CTCTATACATGTAATGTGTA+TGG + chr2_3:13262958-13262977 None:intergenic 30.0%
TACATGTATAGAGATCTTGT+TGG - chr2_3:13262965-13262984 Msa0279400:intron 30.0%
GTTGGCGACTATAATTTATA+CGG - chr2_3:13262983-13263002 Msa0279400:intron 30.0%
GATGAATAGAGATATTTGGA+AGG + chr2_3:13263130-13263149 None:intergenic 30.0%
CAATGCTATCAAGAGTTAAA+TGG + chr2_3:13263325-13263344 None:intergenic 30.0%
! CATTTAACTCTTGATAGCAT+TGG - chr2_3:13263323-13263342 Msa0279400:intron 30.0%
AATTCAAAAACTTTCTGAGC+AGG + chr2_3:13263446-13263465 None:intergenic 30.0%
! TTGGTCCTCAAATATGATTT+TGG - chr2_3:13263596-13263615 Msa0279400:intron 30.0%
GCTAACCAAAATCATATTTG+AGG + chr2_3:13263604-13263623 None:intergenic 30.0%
GAAATTGCACACATTTCAAA+TGG - chr2_3:13263850-13263869 Msa0279400:intron 30.0%
CAACTGCATTTCAATTATCA+AGG - chr2_3:13263885-13263904 Msa0279400:intron 30.0%
CTATATACCGAACAATTTCT+AGG + chr2_3:13263976-13263995 None:intergenic 30.0%
! AAATTATGGATGTGGCTTTA+AGG - chr2_3:13264142-13264161 Msa0279400:intron 30.0%
!! AATTATGGATGTGGCTTTAA+GGG - chr2_3:13264143-13264162 Msa0279400:intron 30.0%
TACTTATATCAACACCCAAT+TGG - chr2_3:13264353-13264372 Msa0279400:CDS 30.0%
AGCTACTATTCTAAATGTGA+AGG - chr2_3:13264377-13264396 Msa0279400:CDS 30.0%
TTCAAGTATGGATGTTTGAG+CGG + chr2_3:13259325-13259344 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGTCG+GGG - chr2_3:13259698-13259717 Msa0279400:intron 35.0%
GCATAATATATACAAGGTCC+AGG + chr2_3:13259731-13259750 None:intergenic 35.0%
TTATATAGTAGCGTCACCAA+AGG + chr2_3:13259977-13259996 None:intergenic 35.0%
! AGCCCAAACAAATCAAGTTT+TGG - chr2_3:13260405-13260424 Msa0279400:CDS 35.0%
AACTACACTATCTATCATGG+TGG - chr2_3:13260862-13260881 Msa0279400:intron 35.0%
CCAAGGAAATTCGATTCTTT+AGG + chr2_3:13260959-13260978 None:intergenic 35.0%
CCTAAAGAATCGAATTTCCT+TGG - chr2_3:13260956-13260975 Msa0279400:intron 35.0%
CAACATGAACGAGAGAAAAA+CGG - chr2_3:13261014-13261033 Msa0279400:intron 35.0%
TTTGGAGATTTGACCCAAAA+AGG + chr2_3:13261605-13261624 None:intergenic 35.0%
CTTCACCAATCCTGAATATT+TGG + chr2_3:13261723-13261742 None:intergenic 35.0%
GAAGATTAGTGGCATAGATT+TGG - chr2_3:13261739-13261758 Msa0279400:intron 35.0%
! ATTAGTGGCATAGATTTGGT+TGG - chr2_3:13261743-13261762 Msa0279400:intron 35.0%
! CAGCTTTGGTAACAATTGTA+GGG + chr2_3:13262037-13262056 None:intergenic 35.0%
! TCAGCTTTGGTAACAATTGT+AGG + chr2_3:13262038-13262057 None:intergenic 35.0%
! CACTTTGATAGTTTCAGCTT+TGG + chr2_3:13262051-13262070 None:intergenic 35.0%
!! AAAAGTTGATGCTGGTGTAT+GGG - chr2_3:13262285-13262304 Msa0279400:CDS 35.0%
TCTTCTTAGCCGAAAATCAA+GGG + chr2_3:13262540-13262559 None:intergenic 35.0%
TTCTTCTTAGCCGAAAATCA+AGG + chr2_3:13262541-13262560 None:intergenic 35.0%
GATCGGAATTGTCTTAATAG+GGG - chr2_3:13262697-13262716 Msa0279400:intron 35.0%
ATACCTGTTGAAGAAACCAT+AGG - chr2_3:13263073-13263092 Msa0279400:intron 35.0%
AAAGTGTGATTAACCTCCTA+TGG + chr2_3:13263092-13263111 None:intergenic 35.0%
!! GATAAAGCTTGCTGATAGAA+TGG - chr2_3:13263250-13263269 Msa0279400:CDS 35.0%
! TTAACTCTTGATAGCATTGG+TGG - chr2_3:13263326-13263345 Msa0279400:intron 35.0%
!! TAACTCTTGATAGCATTGGT+GGG - chr2_3:13263327-13263346 Msa0279400:intron 35.0%
ATCGCTTTGTAGGATCTTTA+AGG + chr2_3:13263469-13263488 None:intergenic 35.0%
ATGTGTGCAATTTCATGCAT+TGG + chr2_3:13263844-13263863 None:intergenic 35.0%
ATTTCAAATGGACCCTATCA+TGG - chr2_3:13263862-13263881 Msa0279400:intron 35.0%
CTTATGCCCTAGAAATTGTT+CGG - chr2_3:13263966-13263985 Msa0279400:intron 35.0%
!! ATTATGGATGTGGCTTTAAG+GGG - chr2_3:13264144-13264163 Msa0279400:intron 35.0%
ACAAAACCATTTGGAAGGAT+TGG + chr2_3:13264189-13264208 None:intergenic 35.0%
! ATGGTGCATTAAGATTTGGT+TGG + chr2_3:13264227-13264246 None:intergenic 35.0%
CCAAATGGTGCATTAAGATT+TGG + chr2_3:13264231-13264250 None:intergenic 35.0%
CCAAATCTTAATGCACCATT+TGG - chr2_3:13264228-13264247 Msa0279400:intron 35.0%
TAGAATAGTAGCTGCCAATT+GGG + chr2_3:13264370-13264389 None:intergenic 35.0%
TTAGAATAGTAGCTGCCAAT+TGG + chr2_3:13264371-13264390 None:intergenic 35.0%
GTCAATTGGCTGTGAAAGTT+GGG - chr2_3:13260378-13260397 Msa0279400:CDS 40.0%
GAACAAGAGAACTCTGTTGA+AGG - chr2_3:13260433-13260452 Msa0279400:intron 40.0%
!! AAATGTTGATGGTCTTCCAC+AGG + chr2_3:13261140-13261159 None:intergenic 40.0%
AAATGCTCAGCTGAAACAAG+AGG - chr2_3:13261181-13261200 Msa0279400:intron 40.0%
GCAGAAAGAGATAACACTAC+CGG - chr2_3:13261346-13261365 Msa0279400:CDS 40.0%
! TTAAGAGCTTGCTCAAACTC+CGG + chr2_3:13261368-13261387 None:intergenic 40.0%
TGAAATTCCACCAAACCGAA+CGG - chr2_3:13261421-13261440 Msa0279400:intron 40.0%
TTGAGCACTCATAAACCGTT+CGG + chr2_3:13261439-13261458 None:intergenic 40.0%
GAGTGCTCAAATCATGTTCA+TGG - chr2_3:13261449-13261468 Msa0279400:intron 40.0%
GGTAATCTAACTATGAGGAG+AGG - chr2_3:13261470-13261489 Msa0279400:intron 40.0%
! TCAAGTTGTAGATGCTGCAA+TGG - chr2_3:13261547-13261566 Msa0279400:CDS 40.0%
AGATGCTGCAATGGATGAAT+TGG - chr2_3:13261556-13261575 Msa0279400:CDS 40.0%
CTGCAATGGATGAATTGGTT+AGG - chr2_3:13261561-13261580 Msa0279400:CDS 40.0%
!!! TGAGAGTTGATGAGCCTTTT+TGG - chr2_3:13261588-13261607 Msa0279400:CDS 40.0%
!!! GAGAGTTGATGAGCCTTTTT+GGG - chr2_3:13261589-13261608 Msa0279400:CDS 40.0%
GTGTACCCATCTTGAGTATT+TGG + chr2_3:13261623-13261642 None:intergenic 40.0%
! TCAGGATTGGTGAAGATTAG+TGG - chr2_3:13261728-13261747 Msa0279400:intron 40.0%
!! TCGAGATGGAGCTTTATTAC+TGG - chr2_3:13262094-13262113 Msa0279400:CDS 40.0%
CGAATGATGTTAAATTCGCG+AGG + chr2_3:13262256-13262275 None:intergenic 40.0%
!! TACTGCAGAAAAGTTGATGC+TGG - chr2_3:13262277-13262296 Msa0279400:CDS 40.0%
!! GAAAAGTTGATGCTGGTGTA+TGG - chr2_3:13262284-13262303 Msa0279400:CDS 40.0%
ATCATTCGTGAAATGCCTCA+TGG - chr2_3:13262388-13262407 Msa0279400:intron 40.0%
TCATTCGTGAAATGCCTCAT+GGG - chr2_3:13262389-13262408 Msa0279400:intron 40.0%
! CCATATCCTCCCTTGATTTT+CGG - chr2_3:13262528-13262547 Msa0279400:CDS 40.0%
ATCCTAAGCTGATCACGAAA+AGG + chr2_3:13262580-13262599 None:intergenic 40.0%
ATTTATACGGAGCTGAAAGC+TGG - chr2_3:13262996-13263015 Msa0279400:intron 40.0%
AGAATGTGCGAGAGATCTTT+AGG - chr2_3:13263034-13263053 Msa0279400:intron 40.0%
TCAGTGATCCAAACACTTGA+AGG - chr2_3:13263215-13263234 Msa0279400:CDS 40.0%
CAGTGATCCAAACACTTGAA+GGG - chr2_3:13263216-13263235 Msa0279400:CDS 40.0%
TATTCCTCCCTTCAAGTGTT+TGG + chr2_3:13263226-13263245 None:intergenic 40.0%
TGTGAATGCTTAACAATGCC+TGG - chr2_3:13263284-13263303 Msa0279400:CDS 40.0%
!! AACTCTTGATAGCATTGGTG+GGG - chr2_3:13263328-13263347 Msa0279400:intron 40.0%
AATATTCTCGAATGTGCCTC+TGG - chr2_3:13263565-13263584 Msa0279400:intron 40.0%
TAGTGGGATGGTCTTTCTTA+TGG - chr2_3:13263814-13263833 Msa0279400:intron 40.0%
GAAATGCAGTTGCCATGATA+GGG + chr2_3:13263877-13263896 None:intergenic 40.0%
TGAAATGCAGTTGCCATGAT+AGG + chr2_3:13263878-13263897 None:intergenic 40.0%
GAAAGTTTCACTTCTCCTGT+AGG - chr2_3:13264087-13264106 Msa0279400:intron 40.0%
GAGTTACCAATCCTTCCAAA+TGG - chr2_3:13264180-13264199 Msa0279400:intron 40.0%
AGATGGCTCGTTGTTAACAT+TGG - chr2_3:13264269-13264288 Msa0279400:intron 40.0%
!! TGGACTAGTGCTCAGAATTT+GGG + chr2_3:13264298-13264317 None:intergenic 40.0%
!! ATGGACTAGTGCTCAGAATT+TGG + chr2_3:13264299-13264318 None:intergenic 40.0%
AGTTGACCAAGTGCTTAATG+TGG - chr2_3:13264323-13264342 Msa0279400:CDS 40.0%
CATCTTCCACATTAAGCACT+TGG + chr2_3:13264332-13264351 None:intergenic 40.0%
ATGTGAAGGATGCTCTTATG+AGG - chr2_3:13264391-13264410 Msa0279400:CDS 40.0%
! ATGGATTACTCAATGGGAGG+TGG - chr2_3:13259225-13259244 Msa0279400:CDS 45.0%
GAGGTAAGACGTTTGTAGGA+AGG + chr2_3:13259303-13259322 None:intergenic 45.0%
AAGTATGGATGTTTGAGCGG+AGG + chr2_3:13259322-13259341 None:intergenic 45.0%
TCTCGTGAGCTTAGCTCAAT+TGG + chr2_3:13259764-13259783 None:intergenic 45.0%
CGTCAATTGGCTGTGAAAGT+TGG - chr2_3:13260377-13260396 Msa0279400:CDS 45.0%
ATGTGGACGTGTCAGAATCA+CGG + chr2_3:13260892-13260911 None:intergenic 45.0%
AGAAAAACGGTGCTCTTCGT+CGG - chr2_3:13261027-13261046 Msa0279400:intron 45.0%
CCACAATTTGCGAAGCTTGT+GGG - chr2_3:13261102-13261121 Msa0279400:intron 45.0%
CACAATTTGCGAAGCTTGTG+GGG - chr2_3:13261103-13261122 Msa0279400:intron 45.0%
ACAATTTGCGAAGCTTGTGG+GGG - chr2_3:13261104-13261123 Msa0279400:intron 45.0%
TGATGGTCTTCCACAGGAAA+TGG + chr2_3:13261134-13261153 None:intergenic 45.0%
AGACCATCAACATTTCGTGC+AGG - chr2_3:13261145-13261164 Msa0279400:intron 45.0%
TCTCCTGCACGAAATGTTGA+TGG + chr2_3:13261151-13261170 None:intergenic 45.0%
! TCTGCATGTAGCTTGCAAGA+AGG + chr2_3:13261331-13261350 None:intergenic 45.0%
!! TCATAAACCGTTCGGTTTGG+TGG + chr2_3:13261431-13261450 None:intergenic 45.0%
CACTCATAAACCGTTCGGTT+TGG + chr2_3:13261434-13261453 None:intergenic 45.0%
! GTGTTTGAAATAGGTTCGCC+AGG - chr2_3:13262068-13262087 Msa0279400:CDS 45.0%
TGTTTCCAACCACGAGAAAG+AGG + chr2_3:13262355-13262374 None:intergenic 45.0%
TCACGAATGATGCATCCAGA+GGG + chr2_3:13262379-13262398 None:intergenic 45.0%
TTCACGAATGATGCATCCAG+AGG + chr2_3:13262380-13262399 None:intergenic 45.0%
CATTCGTGAAATGCCTCATG+GGG - chr2_3:13262390-13262409 Msa0279400:intron 45.0%
ATTCGTGAAATGCCTCATGG+GGG - chr2_3:13262391-13262410 Msa0279400:intron 45.0%
CCGAAAATCAAGGGAGGATA+TGG + chr2_3:13262531-13262550 None:intergenic 45.0%
TCTTAGCCGAAAATCAAGGG+AGG + chr2_3:13262537-13262556 None:intergenic 45.0%
! AGCTGATCACGAAAAGGTGT+TGG + chr2_3:13262574-13262593 None:intergenic 45.0%
! CACCTTTTCGTGATCAGCTT+AGG - chr2_3:13262575-13262594 Msa0279400:CDS 45.0%
!! TTGGGTTGAACATGTGGAAG+TGG - chr2_3:13262922-13262941 Msa0279400:intron 45.0%
CCTCCTATGGTTTCTTCAAC+AGG + chr2_3:13263079-13263098 None:intergenic 45.0%
CCTGTTGAAGAAACCATAGG+AGG - chr2_3:13263076-13263095 Msa0279400:intron 45.0%
TGATCCAAACACTTGAAGGG+AGG - chr2_3:13263219-13263238 Msa0279400:CDS 45.0%
CTTAACAATGCCTGGTCAAG+TGG - chr2_3:13263292-13263311 Msa0279400:intron 45.0%
TGGTTAAACTCCACTTGACC+AGG + chr2_3:13263305-13263324 None:intergenic 45.0%
GATGATACAAGCCAGCCAAA+TGG - chr2_3:13263380-13263399 Msa0279400:intron 45.0%
!! TAACAACAGTGCCATTTGGC+TGG + chr2_3:13263394-13263413 None:intergenic 45.0%
! GCAGTAACAACAGTGCCATT+TGG + chr2_3:13263398-13263417 None:intergenic 45.0%
TTACTGCTGCTACCACCATT+TGG - chr2_3:13263411-13263430 Msa0279400:intron 45.0%
AAACTTTCTGAGCAGGCAGA+GGG + chr2_3:13263439-13263458 None:intergenic 45.0%
AAAACTTTCTGAGCAGGCAG+AGG + chr2_3:13263440-13263459 None:intergenic 45.0%
AGATCCTACAAAGCGATCAC+AGG - chr2_3:13263472-13263491 Msa0279400:intron 45.0%
GTTACCTGTGATCGCTTTGT+AGG + chr2_3:13263479-13263498 None:intergenic 45.0%
TCTGAGTAGGGATGAATGAC+TGG + chr2_3:13264047-13264066 None:intergenic 45.0%
AGTCATTCATCCCTACTCAG+AGG - chr2_3:13264046-13264065 Msa0279400:intron 45.0%
TCACCATTTGCCTCTGAGTA+GGG + chr2_3:13264059-13264078 None:intergenic 45.0%
ATCACCATTTGCCTCTGAGT+AGG + chr2_3:13264060-13264079 None:intergenic 45.0%
ATACCGTCAGATGCTCCAAA+TGG + chr2_3:13264246-13264265 None:intergenic 45.0%
! GCATCTGACGGTATTGAAGA+TGG - chr2_3:13264252-13264271 Msa0279400:intron 45.0%
AGCACTTGGTCAACTGCATA+TGG + chr2_3:13264318-13264337 None:intergenic 45.0%
!! AAAAATAAATATTAAAAGTT+CGG + chr2_3:13260635-13260654 None:intergenic 5.0%
GATTACTCAATGGGAGGTGG+CGG - chr2_3:13259228-13259247 Msa0279400:CDS 50.0%
AGCGGAGGTAAGACGTTTGT+AGG + chr2_3:13259307-13259326 None:intergenic 50.0%
GAAAAACGGTGCTCTTCGTC+GGG - chr2_3:13261028-13261047 Msa0279400:intron 50.0%
GCCACAATTTGCGAAGCTTG+TGG - chr2_3:13261101-13261120 Msa0279400:intron 50.0%
CCCACAAGCTTCGCAAATTG+TGG + chr2_3:13261105-13261124 None:intergenic 50.0%
TGGTCTTCCACAGGAAATGG+TGG + chr2_3:13261131-13261150 None:intergenic 50.0%
! ACTATGAGGAGAGGTGTGCT+AGG - chr2_3:13261479-13261498 Msa0279400:intron 50.0%
! CTATGAGGAGAGGTGTGCTA+GGG - chr2_3:13261480-13261499 Msa0279400:intron 50.0%
GGTTGGCATGTTTCTCGACT+CGG - chr2_3:13261760-13261779 Msa0279400:intron 50.0%
AAAGCTCCATCTCGACTTCC+TGG + chr2_3:13262089-13262108 None:intergenic 50.0%
! CGAGAAAGAGGTGCAGTGTT+TGG + chr2_3:13262343-13262362 None:intergenic 50.0%
AACACTGCACCTCTTTCTCG+TGG - chr2_3:13262343-13262362 Msa0279400:intron 50.0%
!! GGTCACTTGGGTTGAACATG+TGG - chr2_3:13262916-13262935 Msa0279400:intron 50.0%
CGGAGCTGAAAGCTGGATTA+AGG - chr2_3:13263003-13263022 Msa0279400:intron 50.0%
!! TGGCTGGCTTGTATCATCGT+CGG + chr2_3:13263378-13263397 None:intergenic 50.0%
ATTCTCGAATGTGCCTCTGG+TGG - chr2_3:13263568-13263587 Msa0279400:intron 50.0%
CATCCCTACTCAGAGGCAAA+TGG - chr2_3:13264053-13264072 Msa0279400:intron 50.0%
! GCACCATTTGGAGCATCTGA+CGG - chr2_3:13264240-13264259 Msa0279400:intron 50.0%
CGAGGCAGAACGACGTCAAT+TGG - chr2_3:13260364-13260383 Msa0279400:CDS 55.0%
AATTCGCGAGGCCTCACTAG+AGG + chr2_3:13262244-13262263 None:intergenic 55.0%
AGGTGCAGTGTTTGGTCGAG+AGG + chr2_3:13262335-13262354 None:intergenic 55.0%
CTGCACCTCTTTCTCGTGGT+TGG - chr2_3:13262347-13262366 Msa0279400:intron 55.0%
CGTGGTTGGAAACATCCCTC+TGG - chr2_3:13262361-13262380 Msa0279400:intron 55.0%
AATGCCTCATGGGGGTTGTC+TGG - chr2_3:13262399-13262418 Msa0279400:intron 55.0%
CTAACCAGACAACCCCCATG+AGG + chr2_3:13262406-13262425 None:intergenic 55.0%
! CTGGCTTGTATCATCGTCGG+TGG + chr2_3:13263375-13263394 None:intergenic 55.0%
! TGTGCCTCTGGTGGTGACTT+TGG - chr2_3:13263577-13263596 Msa0279400:intron 55.0%
AGGACCAAAGTCACCACCAG+AGG + chr2_3:13263584-13263603 None:intergenic 55.0%
GGAATGCCACCATCCAGACG+AGG - chr2_3:13260346-13260365 Msa0279400:CDS 60.0%
GTTCTGCCTCGTCTGGATGG+TGG + chr2_3:13260355-13260374 None:intergenic 60.0%
GTCGTTCTGCCTCGTCTGGA+TGG + chr2_3:13260358-13260377 None:intergenic 60.0%
TGACGTCGTTCTGCCTCGTC+TGG + chr2_3:13260362-13260381 None:intergenic 60.0%
TGGGGGTCCACCATTTCCTG+TGG - chr2_3:13261121-13261140 Msa0279400:intron 60.0%
GGTTCGCCAGGAAGTCGAGA+TGG - chr2_3:13262080-13262099 Msa0279400:CDS 60.0%
AGGCAGAGGGAGCCAAATGG+TGG + chr2_3:13263426-13263445 None:intergenic 60.0%
AGCAGGCAGAGGGAGCCAAA+TGG + chr2_3:13263429-13263448 None:intergenic 60.0%
! ATGGGAGGTGGCGGTGAGTC+TGG - chr2_3:13259237-13259256 Msa0279400:CDS 65.0%
GGTGGTCGGGGTTTGAACCC+TGG - chr2_3:13259710-13259729 Msa0279400:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 13259225 13264422 13259225 ID=Msa0279400;Name=Msa0279400
chr2_3 mRNA 13259225 13264422 13259225 ID=Msa0279400-mRNA-1;Parent=Msa0279400;Name=Msa0279400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|10|0|710
chr2_3 exon 13264301 13264422 13264301 ID=Msa0279400-mRNA-1:exon:5689;Parent=Msa0279400-mRNA-1
chr2_3 exon 13263193 13263310 13263193 ID=Msa0279400-mRNA-1:exon:5688;Parent=Msa0279400-mRNA-1
chr2_3 exon 13262445 13262636 13262445 ID=Msa0279400-mRNA-1:exon:5687;Parent=Msa0279400-mRNA-1
chr2_3 exon 13261866 13262336 13261866 ID=Msa0279400-mRNA-1:exon:5686;Parent=Msa0279400-mRNA-1
chr2_3 exon 13261532 13261633 13261532 ID=Msa0279400-mRNA-1:exon:5685;Parent=Msa0279400-mRNA-1
chr2_3 exon 13261227 13261433 13261227 ID=Msa0279400-mRNA-1:exon:5684;Parent=Msa0279400-mRNA-1
chr2_3 exon 13260550 13260730 13260550 ID=Msa0279400-mRNA-1:exon:5683;Parent=Msa0279400-mRNA-1
chr2_3 exon 13260154 13260428 13260154 ID=Msa0279400-mRNA-1:exon:5682;Parent=Msa0279400-mRNA-1
chr2_3 exon 13259741 13259830 13259741 ID=Msa0279400-mRNA-1:exon:5681;Parent=Msa0279400-mRNA-1
chr2_3 exon 13259225 13259599 13259225 ID=Msa0279400-mRNA-1:exon:5680;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13264301 13264422 13264301 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13263193 13263310 13263193 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13262445 13262636 13262445 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13261866 13262336 13261866 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13261532 13261633 13261532 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13261227 13261433 13261227 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13260550 13260730 13260550 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13260154 13260428 13260154 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13259741 13259830 13259741 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
chr2_3 CDS 13259225 13259599 13259225 ID=Msa0279400-mRNA-1:cds;Parent=Msa0279400-mRNA-1
Gene Sequence

>Msa0279400

ATGGATTACTCAATGGGAGGTGGCGGTGAGTCTGGTGATGAAGACATTAGTAACTTTCAAGATGATGGAAACAAACCTTCCTACAAACGTCTTACCTCCGCTCAAACATCCATACTTGAAAATTTCATGAAGGAATGCCACCATCCAGACGAGGCAGAACGACGTCAATTGGCTGTGAAAGTTGGGCTTGAGCCCAAACAAATCAAGTTTTGGTTTCAGAACAAGAGAACTCTGTTGAAGCATCAACATGAACGAGAGAAAAACGGTGCTCTTCGTCGGGAGAATGACAAGATTCGTAACGAAAATCTCAAAATAAAAGAGGTACTGAAAGCCACAATTTGCGAAGCTTGTGGGGGTCCACCATTTCCTGTGGAAGACCATCAACATTTCGTGCAGGAGATGCAGCACGAAAATGCTCAGCTGAAACAAGAGTGTGAAAAAATGTCTAGCCTTCTTGCAAGCTACATGCAGAAAGAGATAACACTACCGGAGTTTGAGCAAGCTCTTAAGTCTATAAAATCATTTTCACGTGACAGAGAACTTGAAATTCCACCAAACCGAACGGTTTATGAGTGCTCAAATCATGTTCATGGTAATCTAACTATGAGGAGAGGTGTGCTAGGGCTCAACTTAACACAAAACTATGATGCACAAAAGATAACTATGTCTCAAGTTGTAGATGCTGCAATGGATGAATTGGTTAGGCTTGTGAGAGTTGATGAGCCTTTTTGGGTCAAATCTCCAAATACTCAAGATGGGTACACTCTTCATCGCGAAAGTTATGAGCAAGTTTTTCCAAAGAACAATCACTTTAAAGGTGCGTATGTGTGCGAAGAATCTTCCAAATATTCAGGATTGGTGAAGATTAGTGGCATAGATTTGGTTGGCATGTTTCTCGACTCGGTCAAATGGACAAACTTGTTCCCTACAATTGTTACCAAAGCTGAAACTATCAAAGTGTTTGAAATAGGTTCGCCAGGAAGTCGAGATGGAGCTTTATTACTGATGAATGAAGAAATGCATATTTTATCACCTCTAGTGAGGCCTCGCGAATTTAACATCATTCGCTACTGCAGAAAAGTTGATGCTGGTGTATGGGTGATAACTGATGTCTCATTTGACTCCTCTCGACCAAACACTGCACCTCTTTCTCGTGGTTGGAAACATCCCTCTGGATGCATCATTCGTGAAATGCCTCATGGGGGTTGTCTGGTCACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATCCATACACATTACATGTATAGAGATCTTGTTGGCGACTATAATTTATACGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGCGAGAGATCTTTAGGCTCTTATGTTAAAGCAATACCTGTTGAAGAAACCATAGGAGTGATCCAAACACTTGAAGGGAGGAATAGTGTGATAAAGCTTGCTGATAGAATGGTGAAAATGTTTTGTGAATGCTTAACAATGCCTGGTCAAGTGGAGTTTAACCATTTAACTCTTGATAGCATTGGTGGGGTTAGAGTCTCTCTTCGCAATACCACCGACGATGATACAAGCCAGCCAAATGGCACTGTTGTTACTGCTGCTACCACCATTTGGCTCCCTCTGCCTGCTCAGAAAGTTTTTGAATTCCTTAAAGATCCTACAAAGCGATCACAGTGGGATGGTCTTTCTTATGGAAATCCAATGCATGAAATTGCACACATTTCAAATGGACCCTATCATGGCAACTGCATTTCAATTATCAAGTCATTCATCCCTACTCAGAGGCAAATGGTGATTCTACAAGAAAGTTTCACTTCTCCTGTAGGATCATACATTATATATGCTCCAACTGATAGAAAAATTATGGATGTGGCTTTAAGGGGTGAAGACTGTAAAGAGTTACCAATCCTTCCAAATGGTTTTGTAATTTGTTCAAAGAGCCAACCAAATCTTAATGCACCATTTGGAGCATCTGACGGTATTGAAGATGGCTCGTTGTTAACATTGGCAGCCCAAATTCTGAGCACTAGTCCATATGCAGTTGACCAAGTGCTTAATGTGGAAGATGTTACTTATATCAACACCCAATTGGCAGCTACTATTCTAAATGTGAAGGATGCTCTTATGAGGTCTATTTAA
Protein sequence

>Msa0279400

MDYSMGGGGESGDEDISNFQDDGNKPSYKRLTSAQTSILENFMKECHHPDEAERRQLAVKVGLEPKQIKFWFQNKRTLLKHQHEREKNGALRRENDKIRNENLKIKEVLKATICEACGGPPFPVEDHQHFVQEMQHENAQLKQECEKMSSLLASYMQKEITLPEFEQALKSIKSFSRDRELEIPPNRTVYECSNHVHGNLTMRRGVLGLNLTQNYDAQKITMSQVVDAAMDELVRLVRVDEPFWVKSPNTQDGYTLHRESYEQVFPKNNHFKGAYVCEESSKYSGLVKISGIDLVGMFLDSVKWTNLFPTIVTKAETIKVFEIGSPGSRDGALLLMNEEMHILSPLVRPREFNIIRYCRKVDAGVWVITDVSFDSSRPNTAPLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVEDKIHTHYMYRDLVGDYNLYGAESWIKELQRMCERSLGSYVKAIPVEETIGVIQTLEGRNSVIKLADRMVKMFCECLTMPGQVEFNHLTLDSIGGVRVSLRNTTDDDTSQPNGTVVTAATTIWLPLPAQKVFEFLKDPTKRSQWDGLSYGNPMHEIAHISNGPYHGNCISIIKSFIPTQRQMVILQESFTSPVGSYIIYAPTDRKIMDVALRGEDCKELPILPNGFVICSKSQPNLNAPFGASDGIEDGSLLTLAAQILSTSPYAVDQVLNVEDVTYINTQLAATILNVKDALMRSI*