Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282040 | XP_003594864.1 | 91.139 | 158 | 14 | 0 | 1 | 158 | 1 | 158 | 2.26e-89 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282040 | sp|Q9FJK3|AGL80_ARATH | 41.667 | 156 | 87 | 2 | 1 | 154 | 1 | 154 | 6.97e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282040 | G7IND2 | 91.139 | 158 | 14 | 0 | 1 | 158 | 1 | 158 | 1.08e-89 | 267 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0282040 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282040 | MtrunA17_Chr2g0296861 | 91.139 | 158 | 14 | 0 | 1 | 158 | 1 | 158 | 2.08e-93 | 267 |
| Msa0282040 | MtrunA17_Chr3g0107381 | 46.203 | 158 | 85 | 0 | 1 | 158 | 1 | 158 | 2.13e-46 | 150 |
| Msa0282040 | MtrunA17_Chr3g0107461 | 49.351 | 154 | 77 | 1 | 1 | 153 | 1 | 154 | 4.64e-46 | 147 |
| Msa0282040 | MtrunA17_Chr3g0110131 | 44.156 | 154 | 86 | 0 | 1 | 154 | 1 | 154 | 4.13e-38 | 130 |
| Msa0282040 | MtrunA17_Chr4g0014321 | 37.662 | 154 | 95 | 1 | 1 | 153 | 1 | 154 | 6.75e-35 | 121 |
| Msa0282040 | MtrunA17_Chr3g0105791 | 47.541 | 122 | 63 | 1 | 30 | 150 | 2 | 123 | 1.07e-33 | 115 |
| Msa0282040 | MtrunA17_Chr4g0031421 | 46.400 | 125 | 66 | 1 | 30 | 153 | 2 | 126 | 3.21e-33 | 114 |
| Msa0282040 | MtrunA17_Chr2g0283941 | 38.750 | 160 | 93 | 2 | 1 | 157 | 1 | 158 | 5.38e-33 | 117 |
| Msa0282040 | MtrunA17_Chr3g0107331 | 39.597 | 149 | 90 | 0 | 4 | 152 | 3 | 151 | 6.29e-33 | 114 |
| Msa0282040 | MtrunA17_Chr4g0013041 | 35.849 | 159 | 99 | 2 | 1 | 158 | 1 | 157 | 5.87e-32 | 113 |
| Msa0282040 | MtrunA17_Chr5g0432691 | 33.333 | 153 | 102 | 0 | 1 | 153 | 1 | 153 | 1.15e-30 | 108 |
| Msa0282040 | MtrunA17_Chr4g0014031 | 37.179 | 156 | 97 | 1 | 1 | 155 | 1 | 156 | 2.11e-29 | 107 |
| Msa0282040 | MtrunA17_Chr8g0351751 | 37.975 | 158 | 95 | 2 | 1 | 155 | 1 | 158 | 2.40e-29 | 107 |
| Msa0282040 | MtrunA17_Chr3g0107361 | 36.486 | 148 | 94 | 0 | 6 | 153 | 5 | 152 | 3.57e-29 | 104 |
| Msa0282040 | MtrunA17_Chr3g0106421 | 42.308 | 130 | 74 | 1 | 30 | 158 | 2 | 131 | 9.96e-29 | 105 |
| Msa0282040 | MtrunA17_Chr1g0197461 | 33.333 | 153 | 101 | 1 | 6 | 158 | 5 | 156 | 1.41e-28 | 103 |
| Msa0282040 | MtrunA17_Chr3g0107351 | 35.135 | 148 | 96 | 0 | 6 | 153 | 5 | 152 | 2.94e-28 | 102 |
| Msa0282040 | MtrunA17_Chr5g0420351 | 34.194 | 155 | 101 | 1 | 1 | 155 | 1 | 154 | 3.88e-28 | 102 |
| Msa0282040 | MtrunA17_Chr4g0014121 | 36.943 | 157 | 98 | 1 | 1 | 156 | 29 | 185 | 3.34e-27 | 100 |
| Msa0282040 | MtrunA17_Chr1g0188681 | 33.987 | 153 | 100 | 1 | 1 | 153 | 1 | 152 | 4.30e-27 | 99.4 |
| Msa0282040 | MtrunA17_Chr3g0107341 | 35.417 | 144 | 93 | 0 | 6 | 149 | 5 | 148 | 2.21e-26 | 97.8 |
| Msa0282040 | MtrunA17_Chr1g0197261 | 30.968 | 155 | 106 | 1 | 1 | 155 | 1 | 154 | 9.26e-24 | 90.9 |
| Msa0282040 | MtrunA17_Chr2g0296831 | 36.752 | 117 | 74 | 0 | 1 | 117 | 1 | 117 | 1.84e-23 | 89.0 |
| Msa0282040 | MtrunA17_Chr4g0014131 | 35.032 | 157 | 101 | 1 | 1 | 156 | 1 | 157 | 8.50e-23 | 90.1 |
| Msa0282040 | MtrunA17_Chr3g0106501 | 38.583 | 127 | 77 | 1 | 30 | 155 | 2 | 128 | 4.20e-22 | 86.7 |
| Msa0282040 | MtrunA17_Chr4g0012761 | 35.897 | 156 | 97 | 3 | 1 | 155 | 1 | 154 | 4.58e-22 | 86.7 |
| Msa0282040 | MtrunA17_Chr1g0197321 | 31.210 | 157 | 104 | 3 | 1 | 155 | 1 | 155 | 9.25e-22 | 85.9 |
| Msa0282040 | MtrunA17_Chr7g0218151 | 32.903 | 155 | 103 | 1 | 1 | 155 | 1 | 154 | 1.26e-21 | 85.5 |
| Msa0282040 | MtrunA17_Chr1g0193311 | 34.194 | 155 | 101 | 1 | 1 | 155 | 1 | 154 | 2.27e-21 | 84.7 |
| Msa0282040 | MtrunA17_Chr1g0188661 | 30.323 | 155 | 107 | 1 | 1 | 155 | 1 | 154 | 4.85e-20 | 81.3 |
| Msa0282040 | MtrunA17_Chr1g0188651 | 36.129 | 155 | 92 | 4 | 1 | 153 | 1 | 150 | 4.20e-18 | 76.3 |
| Msa0282040 | MtrunA17_Chr4g0008701 | 28.814 | 118 | 80 | 1 | 11 | 128 | 14 | 127 | 4.10e-11 | 60.1 |
| Msa0282040 | MtrunA17_Chr7g0267601 | 27.273 | 121 | 78 | 2 | 11 | 128 | 14 | 127 | 5.27e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282040 | AT5G48670.1 | 41.667 | 156 | 87 | 2 | 1 | 154 | 1 | 154 | 7.08e-32 | 116 |
| Msa0282040 | AT3G05860.2 | 36.913 | 149 | 94 | 0 | 1 | 149 | 1 | 149 | 2.57e-29 | 107 |
| Msa0282040 | AT1G65300.1 | 37.086 | 151 | 95 | 0 | 4 | 154 | 3 | 153 | 3.13e-29 | 108 |
| Msa0282040 | AT1G65330.1 | 39.333 | 150 | 89 | 2 | 6 | 154 | 5 | 153 | 3.55e-29 | 108 |
| Msa0282040 | AT3G05860.3 | 39.103 | 156 | 81 | 3 | 1 | 149 | 1 | 149 | 1.37e-28 | 106 |
| Msa0282040 | AT3G05860.1 | 39.103 | 156 | 81 | 3 | 1 | 149 | 1 | 149 | 1.52e-28 | 106 |
| Msa0282040 | AT1G31630.1 | 33.333 | 153 | 91 | 3 | 6 | 153 | 5 | 151 | 7.02e-24 | 95.5 |
| Msa0282040 | AT1G31640.1 | 35.915 | 142 | 90 | 1 | 11 | 152 | 10 | 150 | 2.05e-23 | 95.5 |
| Msa0282040 | AT5G27810.1 | 43.182 | 88 | 50 | 0 | 30 | 117 | 2 | 89 | 7.67e-23 | 87.8 |
| Msa0282040 | AT5G26650.1 | 32.237 | 152 | 103 | 0 | 4 | 155 | 2 | 153 | 1.74e-22 | 92.0 |
| Msa0282040 | AT5G27960.1 | 31.579 | 152 | 104 | 0 | 4 | 155 | 2 | 153 | 1.39e-21 | 89.0 |
| Msa0282040 | AT1G22590.2 | 36.111 | 108 | 69 | 0 | 11 | 118 | 11 | 118 | 5.23e-21 | 84.3 |
| Msa0282040 | AT2G28700.1 | 32.680 | 153 | 95 | 3 | 1 | 149 | 1 | 149 | 6.04e-20 | 84.7 |
| Msa0282040 | AT2G40210.1 | 32.479 | 117 | 79 | 0 | 1 | 117 | 1 | 117 | 9.62e-15 | 70.5 |
| Msa0282040 | AT5G26580.1 | 28.571 | 154 | 96 | 3 | 1 | 154 | 1 | 140 | 2.97e-14 | 69.3 |
| Msa0282040 | AT5G26630.1 | 26.623 | 154 | 113 | 0 | 1 | 154 | 1 | 154 | 3.35e-14 | 67.8 |
| Msa0282040 | AT5G06500.1 | 28.182 | 110 | 75 | 1 | 1 | 110 | 1 | 106 | 4.39e-13 | 65.1 |
Find 26 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATCTATCATTGCTTAT+TGG | 0.201999 | 2_3:-17746885 | Msa0282040:CDS |
| CTTCTCTTTCGATTTCATTA+TGG | 0.221424 | 2_3:+17747013 | None:intergenic |
| ATTCATACTGGTGAATTTGA+TGG | 0.332075 | 2_3:-17746930 | Msa0282040:CDS |
| AGATGGTGTTGGACAAGTTT+AGG | 0.350542 | 2_3:-17747097 | Msa0282040:CDS |
| CTTGGTGAATTCATTCATAC+TGG | 0.375906 | 2_3:-17746942 | Msa0282040:CDS |
| GTTTAGGAGCTTTCCTGAAT+CGG | 0.417309 | 2_3:-17747081 | Msa0282040:CDS |
| TAAACTTGTCCAACACCATC+TGG | 0.418271 | 2_3:+17747099 | None:intergenic |
| AGTGAAATCACCACACTTTG+TGG | 0.451943 | 2_3:-17747194 | Msa0282040:CDS |
| GGAAGACAACATTCAACAAA+AGG | 0.464060 | 2_3:-17747625 | Msa0282040:CDS |
| ATCTATGATGAAAACAATGA+TGG | 0.489972 | 2_3:-17747152 | Msa0282040:CDS |
| AGAGAAGTTGAAGAAACAAA+AGG | 0.500916 | 2_3:-17746997 | Msa0282040:CDS |
| CCTGAATCGGAACAAAGAAA+AGG | 0.516491 | 2_3:-17747068 | Msa0282040:CDS |
| GGAACAAAGAAAAGGAAAGC+TGG | 0.520124 | 2_3:-17747060 | Msa0282040:CDS |
| AGTTGAAGAAACAAAAGGAC+AGG | 0.532305 | 2_3:-17746992 | Msa0282040:CDS |
| AAAAGGAAAGCTGGATCATG+AGG | 0.532487 | 2_3:-17747051 | Msa0282040:CDS |
| AAGAAAATGAATGATCTACT+TGG | 0.551967 | 2_3:-17746960 | Msa0282040:CDS |
| ACGGTTTATCCATCAAAAGA+AGG | 0.566324 | 2_3:-17747125 | Msa0282040:CDS |
| ACATAACTGATGACTTGAAG+AGG | 0.573872 | 2_3:-17747646 | Msa0282040:CDS |
| AGAAGGAGTCCAGATGGTGT+TGG | 0.590630 | 2_3:-17747108 | Msa0282040:CDS |
| ACCGAAAAGAAGTCGATGAG+AGG | 0.615793 | 2_3:-17746857 | Msa0282040:CDS |
| ATCAAAAGAAGGAGTCCAGA+TGG | 0.615817 | 2_3:-17747114 | Msa0282040:CDS |
| TGCATCAATTCCACAAAGTG+TGG | 0.616904 | 2_3:+17747184 | None:intergenic |
| TGAAAACAATGATGGAGCAA+CGG | 0.627126 | 2_3:-17747144 | Msa0282040:CDS |
| ACATTCAACAAAAGGAAGCA+TGG | 0.630577 | 2_3:-17747617 | Msa0282040:intron |
| AAAGGAAAGCTGGATCATGA+GGG | 0.661580 | 2_3:-17747050 | Msa0282040:CDS |
| CTTTGTGGAATTGATGCATG+TGG | 0.684212 | 2_3:-17747179 | Msa0282040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTGTTCTTTATAGAAATAA+AGG | + | chr2_3:17746936-17746955 | None:intergenic | 20.0% |
| !!! | TTTCATATTTTTAGTATCCA+TGG | + | chr2_3:17747026-17747045 | None:intergenic | 20.0% |
| !! | TCATATTGATAAATTCCTAA+TGG | + | chr2_3:17747062-17747081 | None:intergenic | 20.0% |
| !! | TCATAACTGATATGTTATTA+TGG | + | chr2_3:17747162-17747181 | None:intergenic | 20.0% |
| !! | GAAAATAACGATAATTTCAA+AGG | + | chr2_3:17747185-17747204 | None:intergenic | 20.0% |
| !! | GAAAAAATTTATACTATAGC+TGG | + | chr2_3:17747227-17747246 | None:intergenic | 20.0% |
| !! | AGTGTTCTTTATAGAAATAA+AGG | + | chr2_3:17746936-17746955 | None:intergenic | 20.0% |
| !!! | TTTCATATTTTTAGTATCCA+TGG | + | chr2_3:17747026-17747045 | None:intergenic | 20.0% |
| !! | TCATATTGATAAATTCCTAA+TGG | + | chr2_3:17747062-17747081 | None:intergenic | 20.0% |
| !! | TCATAACTGATATGTTATTA+TGG | + | chr2_3:17747162-17747181 | None:intergenic | 20.0% |
| !! | GAAAATAACGATAATTTCAA+AGG | + | chr2_3:17747185-17747204 | None:intergenic | 20.0% |
| !! | GAAAAAATTTATACTATAGC+TGG | + | chr2_3:17747227-17747246 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTATCACTACCA+TGG | - | chr2_3:17747006-17747025 | Msa0282040:CDS | 25.0% |
| ! | ATCTATGATGAAAACAATGA+TGG | - | chr2_3:17747358-17747377 | Msa0282040:intron | 25.0% |
| !! | ATCATTCATTTTCTTCTTCT+TGG | + | chr2_3:17747545-17747564 | None:intergenic | 25.0% |
| ! | AAGAAAATGAATGATCTACT+TGG | - | chr2_3:17747550-17747569 | Msa0282040:intron | 25.0% |
| !!! | GTTTTTTTTTATCACTACCA+TGG | - | chr2_3:17747006-17747025 | Msa0282040:CDS | 25.0% |
| ! | ATCTATGATGAAAACAATGA+TGG | - | chr2_3:17747358-17747377 | Msa0282040:intron | 25.0% |
| !! | ATCATTCATTTTCTTCTTCT+TGG | + | chr2_3:17747545-17747564 | None:intergenic | 25.0% |
| ! | AAGAAAATGAATGATCTACT+TGG | - | chr2_3:17747550-17747569 | Msa0282040:intron | 25.0% |
| !! | GTTTTGTTGTGTTTTTCAAC+AGG | - | chr2_3:17747277-17747296 | Msa0282040:intron | 30.0% |
| CTTCTCTTTCGATTTCATTA+TGG | + | chr2_3:17747500-17747519 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGAAACAAA+AGG | - | chr2_3:17747513-17747532 | Msa0282040:intron | 30.0% | |
| ATTCATACTGGTGAATTTGA+TGG | - | chr2_3:17747580-17747599 | Msa0282040:intron | 30.0% | |
| GAAGATCTATCATTGCTTAT+TGG | - | chr2_3:17747625-17747644 | Msa0282040:CDS | 30.0% | |
| !! | GTTTTGTTGTGTTTTTCAAC+AGG | - | chr2_3:17747277-17747296 | Msa0282040:intron | 30.0% |
| CTTCTCTTTCGATTTCATTA+TGG | + | chr2_3:17747500-17747519 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGAAACAAA+AGG | - | chr2_3:17747513-17747532 | Msa0282040:intron | 30.0% | |
| ATTCATACTGGTGAATTTGA+TGG | - | chr2_3:17747580-17747599 | Msa0282040:intron | 30.0% | |
| GAAGATCTATCATTGCTTAT+TGG | - | chr2_3:17747625-17747644 | Msa0282040:CDS | 30.0% | |
| ACATAACTGATGACTTGAAG+AGG | - | chr2_3:17746864-17746883 | Msa0282040:CDS | 35.0% | |
| GGAAGACAACATTCAACAAA+AGG | - | chr2_3:17746885-17746904 | Msa0282040:CDS | 35.0% | |
| ACATTCAACAAAAGGAAGCA+TGG | - | chr2_3:17746893-17746912 | Msa0282040:CDS | 35.0% | |
| AAGTTGACTGCATAACCATT+AGG | - | chr2_3:17747044-17747063 | Msa0282040:CDS | 35.0% | |
| ! | TGAAAACAATGATGGAGCAA+CGG | - | chr2_3:17747366-17747385 | Msa0282040:intron | 35.0% |
| ACGGTTTATCCATCAAAAGA+AGG | - | chr2_3:17747385-17747404 | Msa0282040:intron | 35.0% | |
| AGTTGAAGAAACAAAAGGAC+AGG | - | chr2_3:17747518-17747537 | Msa0282040:intron | 35.0% | |
| CTTGGTGAATTCATTCATAC+TGG | - | chr2_3:17747568-17747587 | Msa0282040:intron | 35.0% | |
| ACATAACTGATGACTTGAAG+AGG | - | chr2_3:17746864-17746883 | Msa0282040:CDS | 35.0% | |
| GGAAGACAACATTCAACAAA+AGG | - | chr2_3:17746885-17746904 | Msa0282040:CDS | 35.0% | |
| ACATTCAACAAAAGGAAGCA+TGG | - | chr2_3:17746893-17746912 | Msa0282040:CDS | 35.0% | |
| AAGTTGACTGCATAACCATT+AGG | - | chr2_3:17747044-17747063 | Msa0282040:CDS | 35.0% | |
| ! | TGAAAACAATGATGGAGCAA+CGG | - | chr2_3:17747366-17747385 | Msa0282040:intron | 35.0% |
| ACGGTTTATCCATCAAAAGA+AGG | - | chr2_3:17747385-17747404 | Msa0282040:intron | 35.0% | |
| AGTTGAAGAAACAAAAGGAC+AGG | - | chr2_3:17747518-17747537 | Msa0282040:intron | 35.0% | |
| CTTGGTGAATTCATTCATAC+TGG | - | chr2_3:17747568-17747587 | Msa0282040:intron | 35.0% | |
| AGTGAAATCACCACACTTTG+TGG | - | chr2_3:17747316-17747335 | Msa0282040:intron | 40.0% | |
| TGCATCAATTCCACAAAGTG+TGG | + | chr2_3:17747329-17747348 | None:intergenic | 40.0% | |
| CTTTGTGGAATTGATGCATG+TGG | - | chr2_3:17747331-17747350 | Msa0282040:intron | 40.0% | |
| ! | ATCTGGACTCCTTCTTTTGA+TGG | + | chr2_3:17747397-17747416 | None:intergenic | 40.0% |
| ATCAAAAGAAGGAGTCCAGA+TGG | - | chr2_3:17747396-17747415 | Msa0282040:intron | 40.0% | |
| TAAACTTGTCCAACACCATC+TGG | + | chr2_3:17747414-17747433 | None:intergenic | 40.0% | |
| ! | AGATGGTGTTGGACAAGTTT+AGG | - | chr2_3:17747413-17747432 | Msa0282040:intron | 40.0% |
| GTTTAGGAGCTTTCCTGAAT+CGG | - | chr2_3:17747429-17747448 | Msa0282040:intron | 40.0% | |
| ! | CCTTTTCTTTGTTCCGATTC+AGG | + | chr2_3:17747445-17747464 | None:intergenic | 40.0% |
| CCTGAATCGGAACAAAGAAA+AGG | - | chr2_3:17747442-17747461 | Msa0282040:intron | 40.0% | |
| GGAACAAAGAAAAGGAAAGC+TGG | - | chr2_3:17747450-17747469 | Msa0282040:intron | 40.0% | |
| AAAAGGAAAGCTGGATCATG+AGG | - | chr2_3:17747459-17747478 | Msa0282040:intron | 40.0% | |
| AAAGGAAAGCTGGATCATGA+GGG | - | chr2_3:17747460-17747479 | Msa0282040:intron | 40.0% | |
| !!! | TCCTCTCATCGACTTCTTTT+CGG | + | chr2_3:17747657-17747676 | None:intergenic | 40.0% |
| AGTGAAATCACCACACTTTG+TGG | - | chr2_3:17747316-17747335 | Msa0282040:intron | 40.0% | |
| TGCATCAATTCCACAAAGTG+TGG | + | chr2_3:17747329-17747348 | None:intergenic | 40.0% | |
| CTTTGTGGAATTGATGCATG+TGG | - | chr2_3:17747331-17747350 | Msa0282040:intron | 40.0% | |
| ! | ATCTGGACTCCTTCTTTTGA+TGG | + | chr2_3:17747397-17747416 | None:intergenic | 40.0% |
| ATCAAAAGAAGGAGTCCAGA+TGG | - | chr2_3:17747396-17747415 | Msa0282040:intron | 40.0% | |
| TAAACTTGTCCAACACCATC+TGG | + | chr2_3:17747414-17747433 | None:intergenic | 40.0% | |
| ! | AGATGGTGTTGGACAAGTTT+AGG | - | chr2_3:17747413-17747432 | Msa0282040:intron | 40.0% |
| GTTTAGGAGCTTTCCTGAAT+CGG | - | chr2_3:17747429-17747448 | Msa0282040:intron | 40.0% | |
| ! | CCTTTTCTTTGTTCCGATTC+AGG | + | chr2_3:17747445-17747464 | None:intergenic | 40.0% |
| CCTGAATCGGAACAAAGAAA+AGG | - | chr2_3:17747442-17747461 | Msa0282040:intron | 40.0% | |
| GGAACAAAGAAAAGGAAAGC+TGG | - | chr2_3:17747450-17747469 | Msa0282040:intron | 40.0% | |
| AAAAGGAAAGCTGGATCATG+AGG | - | chr2_3:17747459-17747478 | Msa0282040:intron | 40.0% | |
| AAAGGAAAGCTGGATCATGA+GGG | - | chr2_3:17747460-17747479 | Msa0282040:intron | 40.0% | |
| !!! | TCCTCTCATCGACTTCTTTT+CGG | + | chr2_3:17747657-17747676 | None:intergenic | 40.0% |
| ATTTCCCTCAACTCGCTCAT+GGG | - | chr2_3:17747255-17747274 | Msa0282040:intron | 45.0% | |
| ! | AAAACCCATGAGCGAGTTGA+GGG | + | chr2_3:17747262-17747281 | None:intergenic | 45.0% |
| ACCGAAAAGAAGTCGATGAG+AGG | - | chr2_3:17747653-17747672 | Msa0282040:CDS | 45.0% | |
| ATTTCCCTCAACTCGCTCAT+GGG | - | chr2_3:17747255-17747274 | Msa0282040:intron | 45.0% | |
| ! | AAAACCCATGAGCGAGTTGA+GGG | + | chr2_3:17747262-17747281 | None:intergenic | 45.0% |
| ACCGAAAAGAAGTCGATGAG+AGG | - | chr2_3:17747653-17747672 | Msa0282040:CDS | 45.0% | |
| CATTTCCCTCAACTCGCTCA+TGG | - | chr2_3:17747254-17747273 | Msa0282040:intron | 50.0% | |
| CAAAACCCATGAGCGAGTTG+AGG | + | chr2_3:17747263-17747282 | None:intergenic | 50.0% | |
| AGAAGGAGTCCAGATGGTGT+TGG | - | chr2_3:17747402-17747421 | Msa0282040:intron | 50.0% | |
| CATTTCCCTCAACTCGCTCA+TGG | - | chr2_3:17747254-17747273 | Msa0282040:intron | 50.0% | |
| CAAAACCCATGAGCGAGTTG+AGG | + | chr2_3:17747263-17747282 | None:intergenic | 50.0% | |
| AGAAGGAGTCCAGATGGTGT+TGG | - | chr2_3:17747402-17747421 | Msa0282040:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 17746836 | 17747696 | 17746836 | ID=Msa0282040;Name=Msa0282040 |
| chr2_3 | mRNA | 17746836 | 17747696 | 17746836 | ID=Msa0282040-mRNA-1;Parent=Msa0282040;Name=Msa0282040-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|158 |
| chr2_3 | exon | 17747618 | 17747696 | 17747618 | ID=Msa0282040-mRNA-1:exon:7308;Parent=Msa0282040-mRNA-1 |
| chr2_3 | exon | 17746836 | 17747233 | 17746836 | ID=Msa0282040-mRNA-1:exon:7307;Parent=Msa0282040-mRNA-1 |
| chr2_3 | CDS | 17747618 | 17747696 | 17747618 | ID=Msa0282040-mRNA-1:cds;Parent=Msa0282040-mRNA-1 |
| chr2_3 | CDS | 17746836 | 17747233 | 17746836 | ID=Msa0282040-mRNA-1:cds;Parent=Msa0282040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
