Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284620 | KEH37561.1 | 94.521 | 365 | 10 | 4 | 2 | 365 | 1 | 356 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284620 | sp|A2XA73|GRF1_ORYSI | 35.427 | 398 | 199 | 13 | 7 | 365 | 17 | 395 | 1.13e-58 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284620 | A0A072V7F0 | 94.521 | 365 | 10 | 4 | 2 | 365 | 1 | 356 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0284620 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284620 | MtrunA17_Chr2g0300511 | 94.490 | 363 | 10 | 4 | 2 | 363 | 1 | 354 | 0.0 | 693 |
| Msa0284620 | MtrunA17_Chr4g0070591 | 64.156 | 385 | 93 | 15 | 1 | 361 | 1 | 364 | 3.71e-146 | 418 |
| Msa0284620 | MtrunA17_Chr8g0343881 | 45.559 | 349 | 155 | 13 | 4 | 334 | 7 | 338 | 2.68e-69 | 221 |
| Msa0284620 | MtrunA17_Chr4g0021261 | 39.437 | 355 | 142 | 13 | 8 | 348 | 25 | 320 | 1.70e-59 | 195 |
| Msa0284620 | MtrunA17_Chr1g0152191 | 57.391 | 115 | 49 | 0 | 6 | 120 | 142 | 256 | 4.86e-41 | 152 |
| Msa0284620 | MtrunA17_Chr5g0409471 | 60.177 | 113 | 29 | 2 | 8 | 120 | 16 | 112 | 1.22e-40 | 145 |
| Msa0284620 | MtrunA17_Chr7g0265931 | 54.198 | 131 | 45 | 4 | 5 | 126 | 68 | 192 | 2.06e-35 | 133 |
| Msa0284620 | MtrunA17_Chr3g0127641 | 48.246 | 114 | 37 | 3 | 8 | 121 | 112 | 203 | 1.60e-27 | 113 |
| Msa0284620 | MtrunA17_Chr8g0351521 | 43.697 | 119 | 45 | 3 | 4 | 120 | 50 | 148 | 1.74e-22 | 98.2 |
| Msa0284620 | MtrunA17_Chr8g0351521 | 46.377 | 69 | 37 | 0 | 76 | 144 | 302 | 370 | 1.85e-13 | 71.2 |
| Msa0284620 | MtrunA17_Chr8g0351291 | 64.103 | 39 | 14 | 0 | 76 | 114 | 51 | 89 | 1.15e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284620 | AT3G13960.1 | 71.681 | 113 | 28 | 2 | 8 | 120 | 16 | 124 | 2.13e-55 | 187 |
| Msa0284620 | AT2G06200.1 | 64.167 | 120 | 36 | 2 | 6 | 118 | 4 | 123 | 2.27e-47 | 161 |
| Msa0284620 | AT2G06200.2 | 61.600 | 125 | 41 | 2 | 1 | 118 | 38 | 162 | 2.61e-47 | 162 |
| Msa0284620 | AT4G37740.1 | 58.120 | 117 | 41 | 4 | 6 | 121 | 162 | 271 | 4.79e-39 | 146 |
| Msa0284620 | AT2G36400.1 | 56.198 | 121 | 50 | 2 | 9 | 128 | 77 | 195 | 1.20e-36 | 137 |
| Msa0284620 | AT3G52910.1 | 55.172 | 116 | 44 | 4 | 9 | 120 | 83 | 194 | 1.04e-33 | 129 |
| Msa0284620 | AT2G22840.1 | 53.719 | 121 | 48 | 4 | 1 | 120 | 126 | 239 | 2.48e-33 | 130 |
| Msa0284620 | AT2G06200.3 | 92.157 | 51 | 2 | 1 | 70 | 118 | 1 | 51 | 2.92e-26 | 103 |
| Msa0284620 | AT5G53660.1 | 49.123 | 114 | 37 | 3 | 7 | 120 | 58 | 150 | 5.74e-26 | 107 |
| Msa0284620 | AT4G24150.1 | 41.007 | 139 | 53 | 3 | 9 | 120 | 150 | 286 | 9.28e-24 | 102 |
| Msa0284620 | AT4G24150.3 | 44.444 | 117 | 55 | 2 | 9 | 120 | 112 | 223 | 1.85e-23 | 101 |
| Msa0284620 | AT4G24150.2 | 44.444 | 117 | 55 | 2 | 9 | 120 | 150 | 261 | 2.77e-23 | 101 |
| Msa0284620 | AT2G45480.2 | 39.669 | 121 | 56 | 3 | 4 | 117 | 19 | 129 | 5.11e-18 | 84.0 |
| Msa0284620 | AT2G45480.1 | 39.669 | 121 | 56 | 3 | 4 | 117 | 17 | 127 | 2.22e-17 | 83.6 |
| Msa0284620 | AT2G45480.1 | 50.685 | 73 | 24 | 3 | 73 | 145 | 301 | 361 | 1.01e-12 | 69.3 |
| Msa0284620 | AT2G45480.3 | 39.669 | 121 | 56 | 3 | 4 | 117 | 19 | 129 | 2.37e-17 | 83.6 |
| Msa0284620 | AT2G45480.3 | 50.685 | 73 | 24 | 3 | 73 | 145 | 303 | 363 | 1.03e-12 | 69.3 |
Find 72 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGGATTGTTGCAAAT+TGG | 0.210488 | 2_3:+22979947 | None:intergenic |
| TTCTTTGATAGTACTGTTCT+AGG | 0.239249 | 2_3:-22978687 | Msa0284620:three_prime_UTR |
| TGCCATTGTGATGGAGTAAA+AGG | 0.243712 | 2_3:+22981087 | None:intergenic |
| CTTTCACAATATTTAGAATC+TGG | 0.287060 | 2_3:+22980182 | None:intergenic |
| ATTTACAAGTACATGGCTTC+TGG | 0.322552 | 2_3:-22981042 | Msa0284620:CDS |
| GAGAGATCAATGGCTTGATT+TGG | 0.343166 | 2_3:-22978839 | Msa0284620:CDS |
| CTCAGAATAACACTGATTAC+AGG | 0.358203 | 2_3:-22979827 | Msa0284620:intron |
| ATGGTTAGTCATCATTTATC+AGG | 0.365999 | 2_3:-22978601 | Msa0284620:three_prime_UTR |
| TTTGATGAATGGCCACATAA+AGG | 0.368324 | 2_3:-22978862 | Msa0284620:CDS |
| AACTATCTGCAAATGGGTTT+AGG | 0.375973 | 2_3:-22980281 | Msa0284620:CDS |
| GCATTCTTCAAAGAACCTTC+TGG | 0.390445 | 2_3:-22979105 | Msa0284620:CDS |
| ATTAATAATGCTTCATCACT+TGG | 0.397780 | 2_3:-22980080 | Msa0284620:CDS |
| TCAACTTTGTCATCTGGTAT+TGG | 0.398620 | 2_3:-22979903 | Msa0284620:CDS |
| ACTTTACTAGCCACGATTCT+CGG | 0.402005 | 2_3:+22978551 | None:intergenic |
| GAAGAACAGATGGAAAGAAA+TGG | 0.403362 | 2_3:-22980226 | Msa0284620:CDS |
| TTGATGAATGGCCACATAAA+GGG | 0.413091 | 2_3:-22978861 | Msa0284620:CDS |
| AGGAAGGAAGTGGAACCATT+AGG | 0.419979 | 2_3:+22981299 | None:intergenic |
| CTTTACTAGCCACGATTCTC+GGG | 0.420240 | 2_3:+22978552 | None:intergenic |
| GAAGAATTAGTTAATGATGC+AGG | 0.421290 | 2_3:+22980032 | None:intergenic |
| TTCATCGCTTCTTTGATGAA+TGG | 0.422547 | 2_3:-22978873 | Msa0284620:CDS |
| ATAATAGAATAGAATAGAAT+AGG | 0.422706 | 2_3:+22981200 | None:intergenic |
| TCAAGGTCAACTTTGTCATC+TGG | 0.430096 | 2_3:-22979909 | Msa0284620:CDS |
| TGTATCCTCATACAACTTCA+AGG | 0.438634 | 2_3:-22979926 | Msa0284620:CDS |
| GGAAGTGGAACCATTAGGTT+AGG | 0.441836 | 2_3:+22981304 | None:intergenic |
| GATGGATAAAATAAAACTAA+TGG | 0.442644 | 2_3:+22981353 | None:intergenic |
| AAGCTTCTCTGCTTCATCAA+TGG | 0.443492 | 2_3:-22979067 | Msa0284620:CDS |
| CTTCTACATCTACCTGGCTC+TGG | 0.445022 | 2_3:+22980245 | None:intergenic |
| TGGATGGAACTATCTGCAAA+TGG | 0.447963 | 2_3:-22980288 | Msa0284620:CDS |
| GATTCTGTAACCTAACCTAA+TGG | 0.456910 | 2_3:-22981314 | Msa0284620:five_prime_UTR |
| TCGATTTCGATTCCATCCTC+TGG | 0.461357 | 2_3:-22978790 | Msa0284620:CDS |
| CATAGAGATTCATATCCATT+CGG | 0.462117 | 2_3:-22978716 | Msa0284620:three_prime_UTR |
| CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | 2_3:+22980138 | None:intergenic |
| TATCCTCAAAATTCTTGCTA+TGG | 0.474491 | 2_3:-22979972 | Msa0284620:CDS |
| CATTGATCTCTCCCTTTATG+TGG | 0.488068 | 2_3:+22978850 | None:intergenic |
| GTTGACCTTGAAGTTGTATG+AGG | 0.489086 | 2_3:+22979921 | None:intergenic |
| AAAAGGAACAGGTATGTGTA+TGG | 0.489899 | 2_3:-22979153 | Msa0284620:intron |
| CAGTGTTGGTGTTGTTGAGT+AGG | 0.494839 | 2_3:+22980943 | None:intergenic |
| TAGAATAGAATAGGTGTTGG+TGG | 0.499953 | 2_3:+22981209 | None:intergenic |
| AGTTGTATGAGGATACATAA+AGG | 0.504350 | 2_3:+22979932 | None:intergenic |
| GTATTTCTAGAAGTGAAAGT+TGG | 0.508645 | 2_3:+22978757 | None:intergenic |
| GGATGGAACTATCTGCAAAT+GGG | 0.512539 | 2_3:-22980287 | Msa0284620:CDS |
| TCTTGTTCTTGTGTGTAAGA+TGG | 0.516895 | 2_3:+22981335 | None:intergenic |
| CATCAATGGAACATGATCCT+TGG | 0.521187 | 2_3:-22979053 | Msa0284620:CDS |
| AGCTCTTATTTACAAGTACA+TGG | 0.521532 | 2_3:-22981049 | Msa0284620:CDS |
| CAAAGAAGTAGAAGATGATG+AGG | 0.529690 | 2_3:+22979002 | None:intergenic |
| CACATAAAGGGAGAGATCAA+TGG | 0.535742 | 2_3:-22978849 | Msa0284620:CDS |
| ATCAAAGAAATTGAGCCGAA+TGG | 0.551716 | 2_3:+22978701 | None:intergenic |
| GTAAGTGGTGTTAGTTGCCA+AGG | 0.556427 | 2_3:+22979036 | None:intergenic |
| AGAGAAGAGGAGAAGAGAAG+AGG | 0.563111 | 2_3:+22981151 | None:intergenic |
| CTATGAAAGTTCAATTACCA+TGG | 0.563963 | 2_3:+22978734 | None:intergenic |
| GGTAGATGTAGAAGAACAGA+TGG | 0.565829 | 2_3:-22980236 | Msa0284620:CDS |
| TCAAGTTCTTGCCATTGTGA+TGG | 0.567945 | 2_3:+22981078 | None:intergenic |
| AAGAATTAGTTAATGATGCA+GGG | 0.570085 | 2_3:+22980033 | None:intergenic |
| GAGGAAGAACTCATAGTAAG+TGG | 0.573735 | 2_3:+22979021 | None:intergenic |
| TCTGTTCTTCTACATCTACC+TGG | 0.588963 | 2_3:+22980239 | None:intergenic |
| ATTATCAAGCACAAGAGAAG+AGG | 0.589117 | 2_3:+22981138 | None:intergenic |
| GCTGCTTTGAGTGTTCACTA+AGG | 0.590411 | 2_3:+22978923 | None:intergenic |
| TGTGAAAGACACATGCATAG+AGG | 0.590712 | 2_3:-22980167 | Msa0284620:CDS |
| AGAGTTGCTATCAAGAAACA+AGG | 0.594941 | 2_3:+22979854 | None:intergenic |
| GGAAAATCATGACCAGAGGA+TGG | 0.595251 | 2_3:+22978778 | None:intergenic |
| GAATAGAATAGAATAGGTGT+TGG | 0.595917 | 2_3:+22981206 | None:intergenic |
| TTCATAGTACTGCTACCAGA+AGG | 0.597595 | 2_3:+22979090 | None:intergenic |
| TTCACTTCTAGAAATACCCA+TGG | 0.600872 | 2_3:-22978751 | Msa0284620:CDS |
| TATGAAAGTTCAATTACCAT+GGG | 0.607834 | 2_3:+22978735 | None:intergenic |
| AGAGAAAGGACTTACAGTGT+TGG | 0.629687 | 2_3:+22980929 | None:intergenic |
| AATCGAAATCGATAATTGAG+TGG | 0.635985 | 2_3:+22978801 | None:intergenic |
| TTACATCGTGAATTCGAACA+TGG | 0.636750 | 2_3:-22978620 | Msa0284620:three_prime_UTR |
| ATTTGAACACCCGAGAATCG+TGG | 0.637965 | 2_3:-22978561 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 2_3:-22980141 | Msa0284620:CDS |
| AGTTGGAAAATCATGACCAG+AGG | 0.663324 | 2_3:+22978774 | None:intergenic |
| TAGTACTAGAGAGAAAGAGT+AGG | 0.664208 | 2_3:+22981249 | None:intergenic |
| GAGTTGCTATCAAGAAACAA+GGG | 0.701728 | 2_3:+22979855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTATTTTTTGTTAG+AGG | + | chr2_3:22978686-22978705 | None:intergenic | 10.0% |
| !! | ATAATAGAATAGAATAGAAT+AGG | + | chr2_3:22978765-22978784 | None:intergenic | 15.0% |
| !! | TATAGAGATAATTTAGTTAA+AGG | - | chr2_3:22979580-22979599 | Msa0284620:intron | 15.0% |
| !!! | TTATTTTGATTTTTTTCAGT+TGG | - | chr2_3:22979654-22979673 | Msa0284620:intron | 15.0% |
| !! | AAAAAAAAAAGAGATCAAAA+TGG | - | chr2_3:22980692-22980711 | Msa0284620:intron | 15.0% |
| !! | GATGGATAAAATAAAACTAA+TGG | + | chr2_3:22978612-22978631 | None:intergenic | 20.0% |
| !!! | ATTTATTTTTTGTTAGAGGA+AGG | + | chr2_3:22978682-22978701 | None:intergenic | 20.0% |
| !!! | TTTAAAGCAAATTTAGAAAG+TGG | - | chr2_3:22979242-22979261 | Msa0284620:intron | 20.0% |
| !!! | TATATTATATCAAAGGTGTT+AGG | + | chr2_3:22979364-22979383 | None:intergenic | 20.0% |
| !! | GAAGATGTATATTATATCAA+AGG | + | chr2_3:22979371-22979390 | None:intergenic | 20.0% |
| !!! | CTATACATTCATAATCTTTT+AGG | + | chr2_3:22979565-22979584 | None:intergenic | 20.0% |
| !! | AAAAAATCAAAATAACCCTT+TGG | + | chr2_3:22979649-22979668 | None:intergenic | 20.0% |
| !!! | TTTTGATAAATAGTCGTTTT+TGG | - | chr2_3:22980197-22980216 | Msa0284620:CDS | 20.0% |
| !!! | TTTTTTGTTAGTTAGTTTGT+TGG | - | chr2_3:22980313-22980332 | Msa0284620:intron | 20.0% |
| !! | GAAATTACAAAAAGAATCAA+CGG | + | chr2_3:22980610-22980629 | None:intergenic | 20.0% |
| !! | GATACATTCAAAGAATATAA+TGG | - | chr2_3:22980630-22980649 | Msa0284620:intron | 20.0% |
| ! | ACATATGAATATAGAGAGAA+AGG | + | chr2_3:22979050-22979069 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTTTCAGTTGGA+TGG | - | chr2_3:22979658-22979677 | Msa0284620:intron | 25.0% |
| !! | CTTTCACAATATTTAGAATC+TGG | + | chr2_3:22979783-22979802 | None:intergenic | 25.0% |
| ! | ATTAATAATGCTTCATCACT+TGG | - | chr2_3:22979882-22979901 | Msa0284620:CDS | 25.0% |
| ! | AAGAATTAGTTAATGATGCA+GGG | + | chr2_3:22979932-22979951 | None:intergenic | 25.0% |
| !!! | AAGAATTTTGAGGATAGTTT+TGG | + | chr2_3:22979986-22980005 | None:intergenic | 25.0% |
| !! | ATAGTGTTTGAACTTTGTTT+CGG | - | chr2_3:22980172-22980191 | Msa0284620:CDS | 25.0% |
| !!! | TTTGGAGTAAATAGTCATTT+TGG | - | chr2_3:22980215-22980234 | Msa0284620:CDS | 25.0% |
| ! | TTTGAATTACTAACAAAGAC+AGG | - | chr2_3:22980344-22980363 | Msa0284620:intron | 25.0% |
| !! | CTTCAAGTAAATAGTCATTT+TGG | - | chr2_3:22980487-22980506 | Msa0284620:intron | 25.0% |
| !! | GTTTTCTTCCTTTGTAAAAA+AGG | - | chr2_3:22980792-22980811 | Msa0284620:intron | 25.0% |
| ! | TATGAAAGTTCAATTACCAT+GGG | + | chr2_3:22981230-22981249 | None:intergenic | 25.0% |
| GAATAGAATAGAATAGGTGT+TGG | + | chr2_3:22978759-22978778 | None:intergenic | 30.0% | |
| ! | AGCTCTTATTTACAAGTACA+TGG | - | chr2_3:22978913-22978932 | Msa0284620:CDS | 30.0% |
| TACCATCAGAAAAAGCTATT+TGG | - | chr2_3:22978970-22978989 | Msa0284620:CDS | 30.0% | |
| !! | ATCCAAATAGCTTTTTCTGA+TGG | + | chr2_3:22978975-22978994 | None:intergenic | 30.0% |
| !! | GTATTTTTGTGTGTTGCAAA+CGG | + | chr2_3:22979410-22979429 | None:intergenic | 30.0% |
| TTAGCAAAGAAGCTAGTATT+TGG | + | chr2_3:22979478-22979497 | None:intergenic | 30.0% | |
| GAAGAATTAGTTAATGATGC+AGG | + | chr2_3:22979933-22979952 | None:intergenic | 30.0% | |
| TATCCTCAAAATTCTTGCTA+TGG | - | chr2_3:22979990-22980009 | Msa0284620:CDS | 30.0% | |
| CATAAAGGATTGTTGCAAAT+TGG | + | chr2_3:22980018-22980037 | None:intergenic | 30.0% | |
| AGTTGTATGAGGATACATAA+AGG | + | chr2_3:22980033-22980052 | None:intergenic | 30.0% | |
| GAAACAAAGTTCAAACACTA+TGG | + | chr2_3:22980173-22980192 | None:intergenic | 30.0% | |
| TGACATTGTCTTACACATTT+CGG | - | chr2_3:22980410-22980429 | Msa0284620:intron | 30.0% | |
| ! | TTTTGATCTCTTAATGTGTG+AGG | + | chr2_3:22980658-22980677 | None:intergenic | 30.0% |
| CACACATTAAGAGATCAAAA+TGG | - | chr2_3:22980658-22980677 | Msa0284620:intron | 30.0% | |
| ! | GAATTGTGATTGATTCTCTT+TGG | - | chr2_3:22980764-22980783 | Msa0284620:intron | 30.0% |
| TTCCTTTGTAAAAAAGGAAC+AGG | - | chr2_3:22980798-22980817 | Msa0284620:intron | 30.0% | |
| !!! | TACCTGTTCCTTTTTTACAA+AGG | + | chr2_3:22980803-22980822 | None:intergenic | 30.0% |
| AATCGAAATCGATAATTGAG+TGG | + | chr2_3:22981164-22981183 | None:intergenic | 30.0% | |
| !! | GTATTTCTAGAAGTGAAAGT+TGG | + | chr2_3:22981208-22981227 | None:intergenic | 30.0% |
| CTATGAAAGTTCAATTACCA+TGG | + | chr2_3:22981231-22981250 | None:intergenic | 30.0% | |
| CATAGAGATTCATATCCATT+CGG | - | chr2_3:22981246-22981265 | Msa0284620:five_prime_UTR | 30.0% | |
| ! | TTCTTTGATAGTACTGTTCT+AGG | - | chr2_3:22981275-22981294 | Msa0284620:five_prime_UTR | 30.0% |
| ! | ATGGTTAGTCATCATTTATC+AGG | - | chr2_3:22981361-22981380 | Msa0284620:five_prime_UTR | 30.0% |
| TCTTGTTCTTGTGTGTAAGA+TGG | + | chr2_3:22978630-22978649 | None:intergenic | 35.0% | |
| GATTCTGTAACCTAACCTAA+TGG | - | chr2_3:22978648-22978667 | Msa0284620:three_prime_UTR | 35.0% | |
| ! | TTTTTGTTAGAGGAAGGAAG+TGG | + | chr2_3:22978676-22978695 | None:intergenic | 35.0% |
| TAGTACTAGAGAGAAAGAGT+AGG | + | chr2_3:22978716-22978735 | None:intergenic | 35.0% | |
| !! | TAGAATAGAATAGGTGTTGG+TGG | + | chr2_3:22978756-22978775 | None:intergenic | 35.0% |
| ATTATCAAGCACAAGAGAAG+AGG | + | chr2_3:22978827-22978846 | None:intergenic | 35.0% | |
| ! | TTCCTTTTACTCCATCACAA+TGG | - | chr2_3:22978873-22978892 | Msa0284620:CDS | 35.0% |
| ATTTACAAGTACATGGCTTC+TGG | - | chr2_3:22978920-22978939 | Msa0284620:CDS | 35.0% | |
| ATGGTAAAAAGAAGATCAGG+TGG | + | chr2_3:22978956-22978975 | None:intergenic | 35.0% | |
| CTGATGGTAAAAAGAAGATC+AGG | + | chr2_3:22978959-22978978 | None:intergenic | 35.0% | |
| GGAAAAAGTCTTGAAGAAAG+AGG | + | chr2_3:22979001-22979020 | None:intergenic | 35.0% | |
| TATACATCTTCCTCTGTGTT+TGG | - | chr2_3:22979380-22979399 | Msa0284620:intron | 35.0% | |
| TGCAACACACAAAAATACGT+TGG | - | chr2_3:22979412-22979431 | Msa0284620:intron | 35.0% | |
| ATATGAGTCTCTTTGACCAA+AGG | - | chr2_3:22979630-22979649 | Msa0284620:intron | 35.0% | |
| TATGAGTCTCTTTGACCAAA+GGG | - | chr2_3:22979631-22979650 | Msa0284620:intron | 35.0% | |
| ! | AACTATCTGCAAATGGGTTT+AGG | - | chr2_3:22979681-22979700 | Msa0284620:intron | 35.0% |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr2_3:22979736-22979755 | Msa0284620:intron | 35.0% | |
| !!! | GTTGTTTTTACAACTTCCAC+AGG | + | chr2_3:22979840-22979859 | None:intergenic | 35.0% |
| !! | TAATGATGCAGGGCTATTTT+TGG | + | chr2_3:22979922-22979941 | None:intergenic | 35.0% |
| ! | GAACCATAGCAAGAATTTTG+AGG | + | chr2_3:22979996-22980015 | None:intergenic | 35.0% |
| TGTATCCTCATACAACTTCA+AGG | - | chr2_3:22980036-22980055 | Msa0284620:CDS | 35.0% | |
| TCAACTTTGTCATCTGGTAT+TGG | - | chr2_3:22980059-22980078 | Msa0284620:CDS | 35.0% | |
| GAGTTGCTATCAAGAAACAA+GGG | + | chr2_3:22980110-22980129 | None:intergenic | 35.0% | |
| AGAGTTGCTATCAAGAAACA+AGG | + | chr2_3:22980111-22980130 | None:intergenic | 35.0% | |
| ! | CTCAGAATAACACTGATTAC+AGG | - | chr2_3:22980135-22980154 | Msa0284620:CDS | 35.0% |
| ! | TGGTTTGTAGATGTGTAACT+CGG | - | chr2_3:22980507-22980526 | Msa0284620:intron | 35.0% |
| ! | TCGGAAGTTAGTTTGGTAAT+CGG | - | chr2_3:22980526-22980545 | Msa0284620:intron | 35.0% |
| AAAAGGAACAGGTATGTGTA+TGG | - | chr2_3:22980809-22980828 | Msa0284620:intron | 35.0% | |
| TGTGTATGGACAAAAAGAAG+AGG | - | chr2_3:22980823-22980842 | Msa0284620:intron | 35.0% | |
| CAAAGAAGTAGAAGATGATG+AGG | + | chr2_3:22980963-22980982 | None:intergenic | 35.0% | |
| TTCATCGCTTCTTTGATGAA+TGG | - | chr2_3:22981089-22981108 | Msa0284620:CDS | 35.0% | |
| TTTGATGAATGGCCACATAA+AGG | - | chr2_3:22981100-22981119 | Msa0284620:CDS | 35.0% | |
| TTGATGAATGGCCACATAAA+GGG | - | chr2_3:22981101-22981120 | Msa0284620:CDS | 35.0% | |
| ! | TTCACTTCTAGAAATACCCA+TGG | - | chr2_3:22981211-22981230 | Msa0284620:five_prime_UTR | 35.0% |
| ATCAAAGAAATTGAGCCGAA+TGG | + | chr2_3:22981264-22981283 | None:intergenic | 35.0% | |
| TTACATCGTGAATTCGAACA+TGG | - | chr2_3:22981342-22981361 | Msa0284620:five_prime_UTR | 35.0% | |
| ! | TGCCATTGTGATGGAGTAAA+AGG | + | chr2_3:22978878-22978897 | None:intergenic | 40.0% |
| TCAAGTTCTTGCCATTGTGA+TGG | + | chr2_3:22978887-22978906 | None:intergenic | 40.0% | |
| AGAGAAAGGACTTACAGTGT+TGG | + | chr2_3:22979036-22979055 | None:intergenic | 40.0% | |
| !! | TATCAAAGGTGTTAGGTCAG+TGG | + | chr2_3:22979357-22979376 | None:intergenic | 40.0% |
| AAACGGATAACCAAACACAG+AGG | + | chr2_3:22979393-22979412 | None:intergenic | 40.0% | |
| ! | TACTAGCTTCTTTGCTAACG+TGG | - | chr2_3:22979480-22979499 | Msa0284620:intron | 40.0% |
| GTTTGCAAAACGGTGTTTGA+TGG | + | chr2_3:22979522-22979541 | None:intergenic | 40.0% | |
| TTCGTACAGCGTTTGCAAAA+CGG | + | chr2_3:22979532-22979551 | None:intergenic | 40.0% | |
| TGGATGGAACTATCTGCAAA+TGG | - | chr2_3:22979674-22979693 | Msa0284620:intron | 40.0% | |
| GGATGGAACTATCTGCAAAT+GGG | - | chr2_3:22979675-22979694 | Msa0284620:intron | 40.0% | |
| AGAAAAATAGATCCAGAGCC+AGG | - | chr2_3:22979705-22979724 | Msa0284620:intron | 40.0% | |
| TCTGTTCTTCTACATCTACC+TGG | + | chr2_3:22979726-22979745 | None:intergenic | 40.0% | |
| GGTAGATGTAGAAGAACAGA+TGG | - | chr2_3:22979726-22979745 | Msa0284620:intron | 40.0% | |
| TGTGAAAGACACATGCATAG+AGG | - | chr2_3:22979795-22979814 | Msa0284620:intron | 40.0% | |
| GTTGACCTTGAAGTTGTATG+AGG | + | chr2_3:22980044-22980063 | None:intergenic | 40.0% | |
| TCAAGGTCAACTTTGTCATC+TGG | - | chr2_3:22980053-22980072 | Msa0284620:CDS | 40.0% | |
| GCTTCACTGCAAAAATGACA+TGG | + | chr2_3:22980263-22980282 | None:intergenic | 40.0% | |
| GTGTAACTCGGAAGTTAGTT+TGG | - | chr2_3:22980519-22980538 | Msa0284620:intron | 40.0% | |
| GCATTCTTCAAAGAACCTTC+TGG | - | chr2_3:22980857-22980876 | Msa0284620:intron | 40.0% | |
| TTCATAGTACTGCTACCAGA+AGG | + | chr2_3:22980875-22980894 | None:intergenic | 40.0% | |
| AAGCTTCTCTGCTTCATCAA+TGG | - | chr2_3:22980895-22980914 | Msa0284620:intron | 40.0% | |
| CATCAATGGAACATGATCCT+TGG | - | chr2_3:22980909-22980928 | Msa0284620:intron | 40.0% | |
| GAGGAAGAACTCATAGTAAG+TGG | + | chr2_3:22980944-22980963 | None:intergenic | 40.0% | |
| ! | AAGCGATGAACAGTTTTCTG+AGG | + | chr2_3:22981079-22981098 | None:intergenic | 40.0% |
| CATTGATCTCTCCCTTTATG+TGG | + | chr2_3:22981115-22981134 | None:intergenic | 40.0% | |
| CACATAAAGGGAGAGATCAA+TGG | - | chr2_3:22981113-22981132 | Msa0284620:exon | 40.0% | |
| GAGAGATCAATGGCTTGATT+TGG | - | chr2_3:22981123-22981142 | Msa0284620:exon | 40.0% | |
| AGTTGGAAAATCATGACCAG+AGG | + | chr2_3:22981191-22981210 | None:intergenic | 40.0% | |
| GGAAGTGGAACCATTAGGTT+AGG | + | chr2_3:22978661-22978680 | None:intergenic | 45.0% | |
| AGGAAGGAAGTGGAACCATT+AGG | + | chr2_3:22978666-22978685 | None:intergenic | 45.0% | |
| AGAGAAGAGGAGAAGAGAAG+AGG | + | chr2_3:22978814-22978833 | None:intergenic | 45.0% | |
| !! | CAGTGTTGGTGTTGTTGAGT+AGG | + | chr2_3:22979022-22979041 | None:intergenic | 45.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr2_3:22979821-22979840 | Msa0284620:intron | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr2_3:22979827-22979846 | None:intergenic | 45.0% | |
| ! | GTAAGTGGTGTTAGTTGCCA+AGG | + | chr2_3:22980929-22980948 | None:intergenic | 45.0% |
| ! | GCTGCTTTGAGTGTTCACTA+AGG | + | chr2_3:22981042-22981061 | None:intergenic | 45.0% |
| TCGATTTCGATTCCATCCTC+TGG | - | chr2_3:22981172-22981191 | Msa0284620:five_prime_UTR | 45.0% | |
| GGAAAATCATGACCAGAGGA+TGG | + | chr2_3:22981187-22981206 | None:intergenic | 45.0% | |
| CTTCTACATCTACCTGGCTC+TGG | + | chr2_3:22979720-22979739 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 22978562 | 22981422 | 22978562 | ID=Msa0284620;Name=Msa0284620 |
| chr2_3 | mRNA | 22978562 | 22981422 | 22978562 | ID=Msa0284620-mRNA-1;Parent=Msa0284620;Name=Msa0284620-mRNA-1;_AED=0.17;_eAED=0.17;_QI=292|1|1|1|1|1|3|182|365 |
| chr2_3 | exon | 22978562 | 22979170 | 22978562 | ID=Msa0284620-mRNA-1:exon:8869;Parent=Msa0284620-mRNA-1 |
| chr2_3 | exon | 22979828 | 22980311 | 22979828 | ID=Msa0284620-mRNA-1:exon:8868;Parent=Msa0284620-mRNA-1 |
| chr2_3 | exon | 22980944 | 22981422 | 22980944 | ID=Msa0284620-mRNA-1:exon:8867;Parent=Msa0284620-mRNA-1 |
| chr2_3 | five_prime_UTR | 22981131 | 22981422 | 22981131 | ID=Msa0284620-mRNA-1:five_prime_utr;Parent=Msa0284620-mRNA-1 |
| chr2_3 | CDS | 22980944 | 22981130 | 22980944 | ID=Msa0284620-mRNA-1:cds;Parent=Msa0284620-mRNA-1 |
| chr2_3 | CDS | 22979828 | 22980311 | 22979828 | ID=Msa0284620-mRNA-1:cds;Parent=Msa0284620-mRNA-1 |
| chr2_3 | CDS | 22978744 | 22979170 | 22978744 | ID=Msa0284620-mRNA-1:cds;Parent=Msa0284620-mRNA-1 |
| chr2_3 | three_prime_UTR | 22978562 | 22978743 | 22978562 | ID=Msa0284620-mRNA-1:three_prime_utr;Parent=Msa0284620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
