AlfalfaGEDB | Msa0285140

M. sativa cultivar zhongmu-4 / Msa0285140

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285140	XP_013463581.1	97.166	1129	16	4	1	1128	1	1114	0.0	2225

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285140	sp\|Q8RYC8\|ARFS_ARATH	80.808	495	89	4	1	494	1	490	0.0	819

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0285140	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285140	MtrunA17_Chr2g0301251	97.166	1129	16	4	1	1128	1	1114	0.0	2225
Msa0285140	MtrunA17_Chr4g0070181	77.419	651	107	10	1	631	1	631	0.0	927
Msa0285140	MtrunA17_Chr8g0389081	62.105	570	179	12	15	566	21	571	0.0	592
Msa0285140	MtrunA17_Chr8g0389081	43.360	369	160	19	788	1113	735	1097	1.15e-57	217
Msa0285140	MtrunA17_Chr2g0285461	59.878	491	161	14	14	491	14	481	9.46e-179	547
Msa0285140	MtrunA17_Chr2g0285461	42.453	212	97	8	904	1105	688	884	1.72e-33	140
Msa0285140	MtrunA17_Chr8g0376771	56.870	524	182	12	1	504	1	500	3.14e-176	541
Msa0285140	MtrunA17_Chr8g0376771	40.385	208	97	7	891	1092	687	873	1.35e-32	137
Msa0285140	MtrunA17_Chr5g0433301	59.657	466	161	10	15	467	16	467	4.11e-176	538
Msa0285140	MtrunA17_Chr5g0433301	59.341	91	37	0	1002	1092	717	807	4.37e-30	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285140	AT1G19220.1	80.808	495	89	4	1	494	1	490	0.0	819
Msa0285140	AT5G20730.2	78.112	498	106	3	1	495	1	498	0.0	795
Msa0285140	AT5G20730.3	77.956	499	106	4	1	495	1	499	0.0	790
Msa0285140	AT5G20730.1	77.956	499	106	4	1	495	1	499	0.0	789
Msa0285140	AT1G30330.1	65.258	426	136	9	1	420	1	420	4.42e-178	547
Msa0285140	AT1G30330.1	59.596	99	40	0	994	1092	788	886	6.63e-32	135
Msa0285140	AT1G30330.3	66.505	412	126	9	15	420	17	422	1.77e-176	543
Msa0285140	AT1G30330.3	59.596	99	40	0	994	1092	790	888	6.48e-32	135
Msa0285140	AT1G30330.2	66.505	412	126	9	15	420	17	422	1.77e-176	543
Msa0285140	AT1G30330.2	59.596	99	40	0	994	1092	790	888	6.48e-32	135

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Find 300 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTCTGAGGGTTGT+TGG	0.430251	2_3:+24476857	None:intergenic
AAAAGCAAAGCAGGTTTGAG+AGG	0.510706	2_3:+24479315	None:intergenic
AAACAACTCATTAAAGATGT+AGG	0.414924	2_3:+24479505	None:intergenic
AAAGATACTATCATCTGCTG+AGG	0.674256	2_3:-24472439	Msa0285140:CDS
AAAGTTAAACAAGATTAACA+TGG	0.637310	2_3:+24479585	None:intergenic
AACAAGCTGGTCTCTTACAG+CGG	0.612463	2_3:-24474257	Msa0285140:CDS
AACCACGAATAATATGATGC+AGG	0.584459	2_3:-24473659	Msa0285140:CDS
AACTAAAACAAGTGAAACTA+AGG	0.430778	2_3:+24479097	None:intergenic
AACTTGTTGTCTAATTATGG+CGG	0.625496	2_3:-24473343	Msa0285140:CDS
AAGAAAGCATGTTCTAAAGT+AGG	0.477542	2_3:+24472024	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAGCTCATATTTCAATGT+CGG	-	chr2_3:24471981-24472000	Msa0285140:three_prime_UTR	30.0%
AAAAAGCAGAAGCAGAAAAT+GGG	+	chr2_3:24472148-24472167	None:intergenic	30.0%
AAAAAAGCAGAAGCAGAAAA+TGG	+	chr2_3:24472149-24472168	None:intergenic	30.0%
ACTTTGTGGTAAGAATCAAA+AGG	-	chr2_3:24472481-24472500	Msa0285140:intron	30.0%
CTTTGTGGTAAGAATCAAAA+GGG	-	chr2_3:24472482-24472501	Msa0285140:intron	30.0%
TTGATATTGTGGAATACTTG+AGG	-	chr2_3:24472568-24472587	Msa0285140:intron	30.0%
TGTTCAGAGATTAATGAAAC+AGG	+	chr2_3:24472774-24472793	None:intergenic	30.0%
AACCCCTTACTCATATTTAT+TGG	+	chr2_3:24472878-24472897	None:intergenic	30.0%
ACATTTGCACAAAGTACATT+TGG	+	chr2_3:24473001-24473020	None:intergenic	30.0%
GCAAATGTGTAACAGATTTA+TGG	-	chr2_3:24473013-24473032	Msa0285140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	24471813	24479637	24471813	ID=Msa0285140;Name=Msa0285140
chr2_3	mRNA	24471813	24479637	24471813	ID=Msa0285140-mRNA-1;Parent=Msa0285140;Name=Msa0285140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=758\|1\|1\|1\|0.92\|0.85\|14\|492\|1128
chr2_3	exon	24471813	24472488	24471813	ID=Msa0285140-mRNA-1:exon:9236;Parent=Msa0285140-mRNA-1
chr2_3	exon	24472616	24472806	24472616	ID=Msa0285140-mRNA-1:exon:9235;Parent=Msa0285140-mRNA-1
chr2_3	exon	24473165	24475035	24473165	ID=Msa0285140-mRNA-1:exon:9234;Parent=Msa0285140-mRNA-1
chr2_3	exon	24475326	24475464	24475326	ID=Msa0285140-mRNA-1:exon:9233;Parent=Msa0285140-mRNA-1
chr2_3	exon	24475886	24476081	24475886	ID=Msa0285140-mRNA-1:exon:9232;Parent=Msa0285140-mRNA-1
chr2_3	exon	24476175	24476339	24476175	ID=Msa0285140-mRNA-1:exon:9231;Parent=Msa0285140-mRNA-1
chr2_3	exon	24476421	24476511	24476421	ID=Msa0285140-mRNA-1:exon:9230;Parent=Msa0285140-mRNA-1
chr2_3	exon	24476600	24476684	24476600	ID=Msa0285140-mRNA-1:exon:9229;Parent=Msa0285140-mRNA-1
chr2_3	exon	24476771	24476926	24476771	ID=Msa0285140-mRNA-1:exon:9228;Parent=Msa0285140-mRNA-1
chr2_3	exon	24477047	24477103	24477047	ID=Msa0285140-mRNA-1:exon:9227;Parent=Msa0285140-mRNA-1
chr2_3	exon	24477794	24477889	24477794	ID=Msa0285140-mRNA-1:exon:9226;Parent=Msa0285140-mRNA-1
chr2_3	exon	24477966	24478078	24477966	ID=Msa0285140-mRNA-1:exon:9225;Parent=Msa0285140-mRNA-1
chr2_3	exon	24478735	24479138	24478735	ID=Msa0285140-mRNA-1:exon:9224;Parent=Msa0285140-mRNA-1
chr2_3	exon	24479241	24479637	24479241	ID=Msa0285140-mRNA-1:exon:9223;Parent=Msa0285140-mRNA-1
chr2_3	five_prime_UTR	24479241	24479637	24479241	ID=Msa0285140-mRNA-1:five_prime_utr;Parent=Msa0285140-mRNA-1
chr2_3	five_prime_UTR	24478778	24479138	24478778	ID=Msa0285140-mRNA-1:five_prime_utr;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24478735	24478777	24478735	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24477966	24478078	24477966	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24477794	24477889	24477794	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24477047	24477103	24477047	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24476771	24476926	24476771	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24476600	24476684	24476600	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24476421	24476511	24476421	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24476175	24476339	24476175	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24475886	24476081	24475886	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24475326	24475464	24475326	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24473165	24475035	24473165	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24472616	24472806	24472616	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	CDS	24472305	24472488	24472305	ID=Msa0285140-mRNA-1:cds;Parent=Msa0285140-mRNA-1
chr2_3	three_prime_UTR	24471813	24472304	24471813	ID=Msa0285140-mRNA-1:three_prime_utr;Parent=Msa0285140-mRNA-1

Gene Sequence

>Msa0285140

ATGAAGGCTCCTTCTAATGGTTACTTGGCTAATTCTGGTGAAGGAGAAAGGAAGGCCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCTATACCGCCTGTTGGAAGCCTTGTTGTTTACTTTCCTCAAGGACATAGCGAACAAGTTGCAGCATCTATGCAAAAGGAGGCTGACATCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATCTGTATGCTTCACAATGTTGCCCTGCATGCTGACCCTGAAACCGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCTTCAGACATGGGTCTCAAACAAAACCAACAACCCTCAGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCAGTGCCTCGTAGAGCTGCTGAGAAAATATTCCCACCTCTGGACTTCTCAATGCAACCGCCAGCTCAGGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTCGTTAGCACAAAAAGACTCTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTCTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCACTATCTTCATCGGTAATATCAAGTGACAGCATGCATATCGGCATTCTTGCTGCTGCGGCTCATGCTGCTTCGAATAACAGTCCATTTACTATATTTTATAATCCAAGGACTAGCCCCTGTGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCTCTGTACACTCATGTTTCTCTCGGAATGAGATTCAGAATGATGTTTGAGACAGAGGATTCAGGCGTACGCAGATATATGGGCACAATCACTGGGATCAGCGACTTGGATCCTGTCCGCTGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGACGAATCAACAGCTGGTGAGCGCCCAAGTAGAGTTTCAATTTGGGACATTGAACCAGTTGTGACTCCTTTTTACATTTGTCCACCTCCGTTTTTTAGGCCGAAGTTCCCGAAGCAGCCAGGAATGCCAGAAGACGAGTCTGAAATCGAAAATGCATTCAAGAGAGCTATGCCATGGCTTGGAGATGAACTCGGCATGAAGGATACCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGTATGCAGCAGAATAATAATAATAATCAGTTTTCCGCTGCTCAATCAGGGCTTTTACCTCCATCCATGCTTTCGTCAAATGCGATGCATGGTAACCTTAACACTGATGACCCATCCAAGATACTGAACTTCCAATCCCCTGCTGCGCTCTCTAATCCAAGTCTTCAATTTAATAAACCTAATTTACCGAACCAAGTCAATCAATTGCAACAGCCCCCGGCCTCGTGGTCTCAGCAACAGCAACAGCAGCAGAAGATGCAGTCGTTGTTGCCAATGCCGTTAAACCAGCTGCAGCAGCAGCAGCAACAGCAGCAGAGGCAACAGCAGCTGGCTGGACCACAAAATCTGCCGCAGCCACAGCAACAACAGCCCCAACTGACTCAACAGAATCCGCAGCAGCCTCAACAGCAGCAACAACACCAACAGCCCTGTCAAAATACGAGTATGAATAACGGCACAATTGGTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGCAACCTACTCTCAGCTTCAGCAACAGTTACTCTCAAGTACCCAATCCCAACAAAATTTCCAATCAGCTGGCAAGAATGGATTGATAATGACATCCTTACCACAAGACTCGCAATTCCAGCAACAAATAGACCAACAACAAGCTGGTCTCTTACAGCGGCAGCAGCAACAGAATCAGTTGCAGCAATCTTCGTTACAGTTATTGCAACAAAGCATGTTGCAAAGGGCACCACAACAACCACAAATGTCTCAAATTTCGCCGCAAAACATCTCAGACCAACAGCAACAGTTGCAGTTGTTACAGAAGTTGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCACTTTCCACATCTTCCCCACTTTTGCAGTCTCAGCTTCTGCCGCAACAAAGCCAGCAAATGCCTCAGCAGCCTATGTCCCAGCATCAGCCCCAACAGCTCGGAAACAACGCATTCTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCACCTCTCATGCATCCACAGCAGCTCCCTGTGAACCATCTCCAGAATACACAAAAATCACCGACAAACACTAGAGCCCCTTCTGCTTTTACAGATGGAGATGCCCCATCATGCTCAACTTCGCCGTCTACTAATAACTGTCAGACATCACCTCCAAACCCTCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCAATGGTTGAAACCACGAATAATATGATGCAGGAGCTTCAAAGTAAGTCTGATATGCAGAACAAACATGAATTACATGGCGTTAAAGGACCCGACAAGCAAAAGCACAAAGGTGCAATCAATGATCATATGGAAGCTTCTTCTGGAACATCGTACGGTATTGATCCTGGTAACATCCACCAGAACTTCCCACTTTCTAACTTCTACATGGATGGTGATGTACACTCGCAACAACCTAGAAGTAATTTACCATTTGCTTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGCGGTGCTCCTAGAGACATTGAAACCGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGTGTACCAAACATGTCTTTTAAGCCAGGATGCTCAAATGAAATTCCTATTGCCGATACCGGAGTTCTGAATAATGGGCTATGGTCTAACCAAAATCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGGTATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGTATCGAAGGACAGCTAGAAGATCCTGTAAGGGTTGACTGGAAACTAGTGTATGTGGATCACGAAAACGACATTCTTCTTGTCGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCTGAGGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATAATATTCCAATCACAAATCAAGCTTGTAGTGGATCAGAAAGTGGCAATGCATGGAGAGCACAATATGATGATAACTCTGCAGCTTCATTTAATCGATAA

Protein sequence

>Msa0285140

MKAPSNGYLANSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDTSSSIFPGLSLVQWMSMQQNNNNNQFSAAQSGLLPPSMLSSNAMHGNLNTDDPSKILNFQSPAALSNPSLQFNKPNLPNQVNQLQQPPASWSQQQQQQQKMQSLLPMPLNQLQQQQQQQQRQQQLAGPQNLPQPQQQQPQLTQQNPQQPQQQQQHQQPCQNTSMNNGTIGSNQIPNQCVQQPATYSQLQQQLLSSTQSQQNFQSAGKNGLIMTSLPQDSQFQQQIDQQQAGLLQRQQQQNQLQQSSLQLLQQSMLQRAPQQPQMSQISPQNISDQQQQLQLLQKLQQQQQQQQQQQQQQQQQQQQQPLSTSSPLLQSQLLPQQSQQMPQQPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMHPQQLPVNHLQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSMVETTNNMMQELQSKSDMQNKHELHGVKGPDKQKHKGAINDHMEASSGTSYGIDPGNIHQNFPLSNFYMDGDVHSQQPRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNEIPIADTGVLNNGLWSNQNQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPVRVDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYNIPITNQACSGSESGNAWRAQYDDNSAASFNR*