AlfalfaGEDB | Msa0285880

M. sativa cultivar zhongmu-4 / Msa0285880

KEGG: K11426
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285880	XP_024632337.1	89.938	646	56	6	8	648	16	657	0.0	1100

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285880	sp\|Q3ECY6\|SDG41_ARATH	37.014	643	308	17	5	636	1	557	3.97e-109	343

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285880	G7IQD7	89.799	647	56	7	8	648	16	658	0.0	1097

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TFs/TRs:

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Gene ID	Type	Classification
Msa0285880	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285880	MtrunA17_Chr2g0302141	89.799	647	56	7	8	648	16	658	0.0	1097
Msa0285880	MtrunA17_Chr3g0108341	88.172	93	10	1	138	230	1	92	2.40e-49	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285880	AT1G43245.1	37.014	643	308	17	5	636	1	557	4.03e-110	343
Msa0285880	AT1G43245.2	37.986	566	283	15	5	561	1	507	1.38e-100	318

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Find 148 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGACGGGTGATCTG+TGG	0.627550	2_3:+25956387	Msa0285880:intron
AAAGAGAGTGGAGTGAGCGG+TGG	0.524539	2_3:-25954814	None:intergenic
AACATCTCAAAATGACGACG+TGG	0.725481	2_3:+25955113	Msa0285880:CDS
AACATGAGGAGCAGTGAGTG+TGG	0.535051	2_3:-25954858	None:intergenic
AACTCTCATCACCATGGAAA+TGG	0.372269	2_3:+25954741	Msa0285880:exon
AAGGGAGCAGTAGTGAATGG+GGG	0.551100	2_3:-25954923	None:intergenic
AAGGGGAGGGAAGGTTGGTG+TGG	0.453799	2_3:-25955050	None:intergenic
AAGTGATTGAGGCGAGTGGA+AGG	0.461563	2_3:-25955069	None:intergenic
AATGGGAGGTGGAGCAGTGA+AGG	0.372109	2_3:-25954942	None:intergenic
AATTTAGAGAGAGATGGTGA+AGG	0.510703	2_3:-25958491	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATAGATAGCAAGCATTA+GGG	-	chr2_3:25955350-25955369	None:intergenic	30.0%
TCAAATAAGTCAATCCATGT+AGG	-	chr2_3:25955886-25955905	None:intergenic	30.0%
AATAAGCTGTATATCCAAAC+AGG	+	chr2_3:25956128-25956147	Msa0285880:intron	30.0%
ATAAGCTGTATATCCAAACA+GGG	+	chr2_3:25956129-25956148	Msa0285880:intron	30.0%
TGATATCACTCTTTCCAATT+TGG	-	chr2_3:25956264-25956283	None:intergenic	30.0%
ATAATTATTCCTTTGCTGCT+TGG	-	chr2_3:25956657-25956676	None:intergenic	30.0%
GAATAGATGGAATGTTGTAA+TGG	+	chr2_3:25956708-25956727	Msa0285880:intron	30.0%
CTCATGATGCTATTAATTAG+TGG	+	chr2_3:25956817-25956836	Msa0285880:intron	30.0%
CTAGATGATTTCTATATCAC+TGG	+	chr2_3:25956885-25956904	Msa0285880:intron	30.0%
TAAGTCAAAAAAATGTGGCA+TGG	-	chr2_3:25957149-25957168	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	25954734	25959268	25954734	ID=Msa0285880;Name=Msa0285880
chr2_3	mRNA	25954734	25959268	25954734	ID=Msa0285880-mRNA-1;Parent=Msa0285880;Name=Msa0285880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=20\|1\|0.8\|1\|1\|1\|5\|0\|648
chr2_3	exon	25954734	25955452	25954734	ID=Msa0285880-mRNA-1:exon:9533;Parent=Msa0285880-mRNA-1
chr2_3	exon	25955589	25955631	25955589	ID=Msa0285880-mRNA-1:exon:9534;Parent=Msa0285880-mRNA-1
chr2_3	exon	25956391	25956494	25956391	ID=Msa0285880-mRNA-1:exon:9535;Parent=Msa0285880-mRNA-1
chr2_3	exon	25957992	25958090	25957992	ID=Msa0285880-mRNA-1:exon:9536;Parent=Msa0285880-mRNA-1
chr2_3	exon	25958267	25959268	25958267	ID=Msa0285880-mRNA-1:exon:9537;Parent=Msa0285880-mRNA-1
chr2_3	five_prime_UTR	25954734	25954753	25954734	ID=Msa0285880-mRNA-1:five_prime_utr;Parent=Msa0285880-mRNA-1
chr2_3	CDS	25954754	25955452	25954754	ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1
chr2_3	CDS	25955589	25955631	25955589	ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1
chr2_3	CDS	25956391	25956494	25956391	ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1
chr2_3	CDS	25957992	25958090	25957992	ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1
chr2_3	CDS	25958267	25959268	25958267	ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1

Gene Sequence

>Msa0285880

ATGGAAATGGAGCTGGAGATGAGAAGCACAGAAGACATAGACATAGCAACAGACATAACACCACCGCTCACTCCACTCTCTTTCTCTCTCCACAACGCCCATCTCCACACTCACTGCTCCTCATGTTTCTCTCTCATAACTCCACCTCCCATTCCCAATCCCAATAATCCCCCCATTCACTACTGCTCCCTTCACTGCTCCACCTCCCATTCCTCAATCCCCCTCTCCTCCGCCGAACACCACCTCCCTTCCTCTTCCACATCCTCCCTCCTCCGCACCGCCCTCCGCCTCCTCCTCCACACCAACCTTCCCTCCCCTTCCACTCGCCTCAATCACTTACTCACTAACCGTCATTTACTAACATCTCAAAATGACGACGTGGCGGAAACCGTCCGCCTCGGCGCACTTACCATGGCTGCCGCAGTAGAAAAGCAAAGCGGTTGCAGCAACGACGGTGCAGCGATTCTGGAGGATGCCACTGTTGCTCTCTGTGCAGTGCTAACCAACGCGGTGGAGGTGCATGATAACGAAGGATGCGCACTCGGGATTGCTGTTTTTGAACATGCTTTCTCTTGGATTAATCATAGTTGTTCCCCTAATGCTTGCTATCTATTCTCCTTCTCCACTTCTTCTTCTCTGCTTTCTCATGAATCCAAACTTCGCATTGTTCCATTCACTCAAAATTCTCAACAACCACAAATAGATTGTGGTGTTTTTGGTAGCAGTAGTGAATTTGCACAAGAAGGACGGGTGATCTGTGGTCCAAAATTGATTGTGAGGAGTATCAAGAAAATTAGAAAGGGGGAAGAGGTCACTGTAGCATATACTGACCTCTTGCAGCCAAAGGGAACGAGACAATCGGAACTATGGTCTAAGTATCGGTTTATTTGTTGCTGCCAACGTTGTAGCTCTCTGCCCTTCACATACGTGGATCATAAATTGCAAGAAATATCTGTTCTTTGTGGAGATTCATCTGGTTTACGTTCCAATTACAATTTCTTCATAGACATGATTGATAGAAGATTGACCGATTCCATTGAAGATGTTATATCAGAGTACCTTTCAGTTGGTGATTCTGCATCTTGTTGTGAGAAGCTCGAGAAGATTCTCATCGAAGGTGTAGACGAGCAGCTAGAAGGAAAAGCACATTCTCAGTTCACGCTGCATCCCCTTCACCATCTCTCTCTAAATTGCTATATGACACTAGCTTCAGCATATAAAGTCCGCGCTGGTGATTTATTATCTGGAGATTCTGAAATTGATTTTAACCAATCGAAAGCTTTTGATATGAGCAGGACCAGTGCTGCATATTTTTTGTTACTGGCAGGTGCAGCTCATCATCTTTTCAATTCTGAATCATCACTTATTGCATCAGTTGCTAATTTTTGGATAGGAGCTGGTGAATCTTTGTTAACTCTTACCAGAAGTTCAGGATGGAGTAAGTTTCTTAATGTTGATTTGGTCCTTTCAAACCTTGCTTCTTACACAAAATTTAAATGCTGTAAGTGGTCATTAATGGGTACTTTTAGAGCCTGTATGTTAAATGGTCAAATCAATTGTGAAGATTTTGAGAATGTATCAAATGAGTTCATTCGTTCTGTCTCAGACATTACTCGTAATGTTTGGAGTTTCCTCGTCTATGATTGCCATTTTTTGAAATCATGCAAGGACCCTATCAATTTCGGCTGGGTAATGTCTGAAAAAAATTCACTAGATGTTCGGGCTCATGATATCAAAACTGGTATGTGTTACACACATGAATCTGTGAATAGAACTGGTTTTCGTGAAGAACAAGATTACAATGCAGTAACACATATTTTTCAGCTTGGTGTACATTGCTTAACATATGGAGGTTTATTGGCTTATATATGTTATGGTCCCCATTCCCATTTGGTTTCTCAGGTTCAAAATATTCTAGATCATAAAAATGATTTTTTATTTTCATGA

Protein sequence

>Msa0285880

MEMELEMRSTEDIDIATDITPPLTPLSFSLHNAHLHTHCSSCFSLITPPPIPNPNNPPIHYCSLHCSTSHSSIPLSSAEHHLPSSSTSSLLRTALRLLLHTNLPSPSTRLNHLLTNRHLLTSQNDDVAETVRLGALTMAAAVEKQSGCSNDGAAILEDATVALCAVLTNAVEVHDNEGCALGIAVFEHAFSWINHSCSPNACYLFSFSTSSSLLSHESKLRIVPFTQNSQQPQIDCGVFGSSSEFAQEGRVICGPKLIVRSIKKIRKGEEVTVAYTDLLQPKGTRQSELWSKYRFICCCQRCSSLPFTYVDHKLQEISVLCGDSSGLRSNYNFFIDMIDRRLTDSIEDVISEYLSVGDSASCCEKLEKILIEGVDEQLEGKAHSQFTLHPLHHLSLNCYMTLASAYKVRAGDLLSGDSEIDFNQSKAFDMSRTSAAYFLLLAGAAHHLFNSESSLIASVANFWIGAGESLLTLTRSSGWSKFLNVDLVLSNLASYTKFKCCKWSLMGTFRACMLNGQINCEDFENVSNEFIRSVSDITRNVWSFLVYDCHFLKSCKDPINFGWVMSEKNSLDVRAHDIKTGMCYTHESVNRTGFREEQDYNAVTHIFQLGVHCLTYGGLLAYICYGPHSHLVSQVQNILDHKNDFLFS*