Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285880 | XP_024632337.1 | 89.938 | 646 | 56 | 6 | 8 | 648 | 16 | 657 | 0.0 | 1100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285880 | sp|Q3ECY6|SDG41_ARATH | 37.014 | 643 | 308 | 17 | 5 | 636 | 1 | 557 | 3.97e-109 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285880 | G7IQD7 | 89.799 | 647 | 56 | 7 | 8 | 648 | 16 | 658 | 0.0 | 1097 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0285880 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285880 | MtrunA17_Chr2g0302141 | 89.799 | 647 | 56 | 7 | 8 | 648 | 16 | 658 | 0.0 | 1097 |
| Msa0285880 | MtrunA17_Chr3g0108341 | 88.172 | 93 | 10 | 1 | 138 | 230 | 1 | 92 | 2.40e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285880 | AT1G43245.1 | 37.014 | 643 | 308 | 17 | 5 | 636 | 1 | 557 | 4.03e-110 | 343 |
| Msa0285880 | AT1G43245.2 | 37.986 | 566 | 283 | 15 | 5 | 561 | 1 | 507 | 1.38e-100 | 318 |
Find 148 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTCCTCACAATCAATTT+TGG | 0.137975 | 2_3:-25956411 | None:intergenic |
| CTTAACATATGGAGGTTTAT+TGG | 0.183713 | 2_3:+25959160 | Msa0285880:CDS |
| CAACGACGGTGCAGCGATTC+TGG | 0.215687 | 2_3:+25955200 | Msa0285880:CDS |
| GTCTATGAAGAAATTGTAAT+TGG | 0.236781 | 2_3:-25958307 | None:intergenic |
| CGCGCTGGTGATTTATTATC+TGG | 0.254941 | 2_3:+25958546 | Msa0285880:CDS |
| ATGCTGTAAGTGGTCATTAA+TGG | 0.271705 | 2_3:+25958818 | Msa0285880:CDS |
| TTTAGAGCCTGTATGTTAAA+TGG | 0.281071 | 2_3:+25958846 | Msa0285880:CDS |
| CCATTCCCATTTGGTTTCTC+AGG | 0.299180 | 2_3:+25959202 | Msa0285880:CDS |
| GGTTGGTGTGGAGGAGGAGG+CGG | 0.307142 | 2_3:-25955038 | None:intergenic |
| CTTACTCCATCCTGAACTTC+TGG | 0.315654 | 2_3:-25958742 | None:intergenic |
| GGCGGAGGGCGGTGCGGAGG+AGG | 0.317899 | 2_3:-25955020 | None:intergenic |
| AGGGAAGGTTGGTGTGGAGG+AGG | 0.323233 | 2_3:-25955044 | None:intergenic |
| GGAGGCGGAGGGCGGTGCGG+AGG | 0.324671 | 2_3:-25955023 | None:intergenic |
| GAATGGAACAATGCGAAGTT+TGG | 0.328300 | 2_3:-25955406 | None:intergenic |
| TGGTGTGGAGGAGGAGGCGG+AGG | 0.330806 | 2_3:-25955035 | None:intergenic |
| GAGAATAGATAGCAAGCATT+AGG | 0.337383 | 2_3:-25955348 | None:intergenic |
| GAAGGTTGGTGTGGAGGAGG+AGG | 0.338435 | 2_3:-25955041 | None:intergenic |
| TAAGTTTCTTAATGTTGATT+TGG | 0.342753 | 2_3:+25958761 | Msa0285880:CDS |
| TTAACTCTTACCAGAAGTTC+AGG | 0.346116 | 2_3:+25958732 | Msa0285880:CDS |
| TTATTGGCTTATATATGTTA+TGG | 0.352031 | 2_3:+25959176 | Msa0285880:CDS |
| TGCAAGGACCCTATCAATTT+CGG | 0.353888 | 2_3:+25958984 | Msa0285880:CDS |
| AGAATAGATAGCAAGCATTA+GGG | 0.355274 | 2_3:-25955347 | None:intergenic |
| GGGAGGGAAGGTTGGTGTGG+AGG | 0.356869 | 2_3:-25955047 | None:intergenic |
| ATTACCCAGCCGAAATTGAT+AGG | 0.361279 | 2_3:-25958993 | None:intergenic |
| GTGGTGTTCGGCGGAGGAGA+GGG | 0.371358 | 2_3:-25954974 | None:intergenic |
| AATGGGAGGTGGAGCAGTGA+AGG | 0.372109 | 2_3:-25954942 | None:intergenic |
| AACTCTCATCACCATGGAAA+TGG | 0.372269 | 2_3:+25954741 | Msa0285880:exon |
| AGGATGTGGAAGAGGAAGGG+AGG | 0.372400 | 2_3:-25954996 | None:intergenic |
| GGGGATTGAGGAATGGGAGG+TGG | 0.372774 | 2_3:-25954953 | None:intergenic |
| GTTCTTTGTGGAGATTCATC+TGG | 0.374282 | 2_3:+25958276 | Msa0285880:CDS |
| GGTGGTGTTCGGCGGAGGAG+AGG | 0.377699 | 2_3:-25954975 | None:intergenic |
| AGGGAGGATGTGGAAGAGGA+AGG | 0.379826 | 2_3:-25955000 | None:intergenic |
| TGGTGTTCGGCGGAGGAGAG+GGG | 0.381555 | 2_3:-25954973 | None:intergenic |
| CGGGCTCATGATATCAAAAC+TGG | 0.384552 | 2_3:+25959041 | Msa0285880:CDS |
| GAGGAGGGAGGATGTGGAAG+AGG | 0.388602 | 2_3:-25955004 | None:intergenic |
| CAGACATTACTCGTAATGTT+TGG | 0.393354 | 2_3:+25958925 | Msa0285880:CDS |
| GGTGCGGAGGAGGGAGGATG+TGG | 0.394361 | 2_3:-25955010 | None:intergenic |
| TTATGGTCCCCATTCCCATT+TGG | 0.394634 | 2_3:+25959193 | Msa0285880:CDS |
| TGCTGTAAGTGGTCATTAAT+GGG | 0.404950 | 2_3:+25958819 | Msa0285880:CDS |
| GGATTATTGGGATTGGGAAT+GGG | 0.408528 | 2_3:-25954901 | None:intergenic |
| TTGGGATTGGGAATGGGAGG+TGG | 0.411307 | 2_3:-25954895 | None:intergenic |
| GTGATTGAGGCGAGTGGAAG+GGG | 0.412177 | 2_3:-25955067 | None:intergenic |
| GTGGAGGAGGAGGCGGAGGG+CGG | 0.414326 | 2_3:-25955031 | None:intergenic |
| TGAAGGGAGCAGTAGTGAAT+GGG | 0.415875 | 2_3:-25954925 | None:intergenic |
| CAGGAAATATCTGTTCTTTG+TGG | 0.422651 | 2_3:+25958264 | Msa0285880:intron |
| AGAGGAAGGGAGGTGGTGTT+CGG | 0.423469 | 2_3:-25954986 | None:intergenic |
| GGGATTATTGGGATTGGGAA+TGG | 0.424603 | 2_3:-25954902 | None:intergenic |
| GGTGTTCGGCGGAGGAGAGG+GGG | 0.426375 | 2_3:-25954972 | None:intergenic |
| TTTGAACCTGAGAAACCAAA+TGG | 0.430256 | 2_3:-25959208 | None:intergenic |
| CTGAGAAACCAAATGGGAAT+GGG | 0.436237 | 2_3:-25959201 | None:intergenic |
| CATGAATCTGTGAATAGAAC+TGG | 0.437992 | 2_3:+25959077 | Msa0285880:CDS |
| GTGAAGGGAGCAGTAGTGAA+TGG | 0.439390 | 2_3:-25954926 | None:intergenic |
| GGAGGAGGCGGAGGGCGGTG+CGG | 0.441836 | 2_3:-25955026 | None:intergenic |
| GGTGTACATTGCTTAACATA+TGG | 0.441977 | 2_3:+25959149 | Msa0285880:CDS |
| ATGTGGAAGAGGAAGGGAGG+TGG | 0.443148 | 2_3:-25954993 | None:intergenic |
| CATCTCCAGCTCCATTTCCA+TGG | 0.444028 | 2_3:-25954752 | None:intergenic |
| GGGAGGATGTGGAAGAGGAA+GGG | 0.449837 | 2_3:-25954999 | None:intergenic |
| AAGGGGAGGGAAGGTTGGTG+TGG | 0.453799 | 2_3:-25955050 | None:intergenic |
| AGTGGAAGGGGAGGGAAGGT+TGG | 0.454567 | 2_3:-25955055 | None:intergenic |
| AAGTGATTGAGGCGAGTGGA+AGG | 0.461563 | 2_3:-25955069 | None:intergenic |
| GAGGGCGGTGCGGAGGAGGG+AGG | 0.467619 | 2_3:-25955016 | None:intergenic |
| AGGGAGGTGGTGTTCGGCGG+AGG | 0.467856 | 2_3:-25954980 | None:intergenic |
| GATTTGACCATTTAACATAC+AGG | 0.472029 | 2_3:-25958853 | None:intergenic |
| CAGAGAAGAAGAAGTGGAGA+AGG | 0.474927 | 2_3:-25955370 | None:intergenic |
| TATAACATCTTCAATGGAAT+CGG | 0.475841 | 2_3:-25958349 | None:intergenic |
| GAACGAGACAATCGGAACTA+TGG | 0.481166 | 2_3:+25957993 | Msa0285880:CDS |
| CTCTGATATAACATCTTCAA+TGG | 0.482382 | 2_3:-25958355 | None:intergenic |
| AGTATCAAGAAAATTAGAAA+GGG | 0.482563 | 2_3:+25956429 | Msa0285880:CDS |
| GCGGAGGGCGGTGCGGAGGA+GGG | 0.489763 | 2_3:-25955019 | None:intergenic |
| AGTGATTGAGGCGAGTGGAA+GGG | 0.490478 | 2_3:-25955068 | None:intergenic |
| AGGACCCTATCAATTTCGGC+TGG | 0.493252 | 2_3:+25958988 | Msa0285880:CDS |
| GAGTATCAAGAAAATTAGAA+AGG | 0.498335 | 2_3:+25956428 | Msa0285880:CDS |
| ATTGAGGCGAGTGGAAGGGG+AGG | 0.499805 | 2_3:-25955064 | None:intergenic |
| ATTTAGAGAGAGATGGTGAA+GGG | 0.500523 | 2_3:-25958490 | None:intergenic |
| AGAAAGCAGAGAAGAAGAAG+TGG | 0.500998 | 2_3:-25955376 | None:intergenic |
| GGCGAGTGGAAGGGGAGGGA+AGG | 0.501061 | 2_3:-25955059 | None:intergenic |
| TTATTGGGATTGGGAATGGG+AGG | 0.501580 | 2_3:-25954898 | None:intergenic |
| TCATATCAAAAGCTTTCGAT+TGG | 0.502770 | 2_3:-25958590 | None:intergenic |
| GATAACGAAGGATGCGCACT+CGG | 0.503690 | 2_3:+25955276 | Msa0285880:CDS |
| TTGTGGAGAGAGAAAGAGAG+TGG | 0.504148 | 2_3:-25954826 | None:intergenic |
| AATTTAGAGAGAGATGGTGA+AGG | 0.510703 | 2_3:-25958491 | None:intergenic |
| TGTAAGAAGCAAGGTTTGAA+AGG | 0.511318 | 2_3:-25958785 | None:intergenic |
| CCGCCTCGGCGCACTTACCA+TGG | 0.513610 | 2_3:+25955146 | Msa0285880:CDS |
| CCTGAGAAACCAAATGGGAA+TGG | 0.514430 | 2_3:-25959202 | None:intergenic |
| CTCTCTGCCCTTCACATACG+TGG | 0.515200 | 2_3:+25958054 | Msa0285880:CDS |
| CATCACCATGGAAATGGAGC+TGG | 0.521146 | 2_3:+25954747 | Msa0285880:exon |
| GAGAAAGAGAGTGGAGTGAG+CGG | 0.523929 | 2_3:-25954817 | None:intergenic |
| AAAGAGAGTGGAGTGAGCGG+TGG | 0.524539 | 2_3:-25954814 | None:intergenic |
| GGTGTAGACGAGCAGCTAGA+AGG | 0.527981 | 2_3:+25958438 | Msa0285880:CDS |
| CGGAACTATGGTCTAAGTAT+CGG | 0.529829 | 2_3:+25958005 | Msa0285880:CDS |
| AACATGAGGAGCAGTGAGTG+TGG | 0.535051 | 2_3:-25954858 | None:intergenic |
| GGTAAGTGCGCCGAGGCGGA+CGG | 0.536704 | 2_3:-25955142 | None:intergenic |
| AGGAGCAGTGAGTGTGGAGA+TGG | 0.536800 | 2_3:-25954852 | None:intergenic |
| CAAAATTTAAATGCTGTAAG+TGG | 0.537765 | 2_3:+25958808 | Msa0285880:CDS |
| TTTGAGATGTTAGTAAATGA+CGG | 0.540262 | 2_3:-25955101 | None:intergenic |
| ATATCAGAGTACCTTTCAGT+TGG | 0.546568 | 2_3:+25958369 | Msa0285880:CDS |
| ATGGGAGGTGGAGCAGTGAA+GGG | 0.546682 | 2_3:-25954941 | None:intergenic |
| AAGGGAGCAGTAGTGAATGG+GGG | 0.551100 | 2_3:-25954923 | None:intergenic |
| GTGGCGGAAACCGTCCGCCT+CGG | 0.552194 | 2_3:+25955132 | Msa0285880:CDS |
| AGTGCTAACCAACGCGGTGG+AGG | 0.554618 | 2_3:+25955248 | Msa0285880:CDS |
| ATAACGAAGGATGCGCACTC+GGG | 0.558272 | 2_3:+25955277 | Msa0285880:CDS |
| TTGAGGCGAGTGGAAGGGGA+GGG | 0.560041 | 2_3:-25955063 | None:intergenic |
| GTATCAAGAAAATTAGAAAG+GGG | 0.565823 | 2_3:+25956430 | Msa0285880:CDS |
| CAAAGCGGTTGCAGCAACGA+CGG | 0.574084 | 2_3:+25955186 | Msa0285880:CDS |
| TTTAGAGAGAGATGGTGAAG+GGG | 0.574560 | 2_3:-25958489 | None:intergenic |
| TTTATGATCCACGTATGTGA+AGG | 0.575433 | 2_3:-25958062 | None:intergenic |
| TTGAACCTGAGAAACCAAAT+GGG | 0.577631 | 2_3:-25959207 | None:intergenic |
| CTCTTACCAGAAGTTCAGGA+TGG | 0.580229 | 2_3:+25958736 | Msa0285880:CDS |
| TGTGTTATGCAGATAGATTG+TGG | 0.580846 | 2_3:+25955577 | Msa0285880:intron |
| TATCAAGAAAATTAGAAAGG+GGG | 0.582590 | 2_3:+25956431 | Msa0285880:CDS |
| GGTTAGTGAGTAAGTGATTG+AGG | 0.582839 | 2_3:-25955080 | None:intergenic |
| TACTGACCTCTTGCAGCCAA+AGG | 0.583268 | 2_3:+25956473 | Msa0285880:CDS |
| AGCATACCTTTGGCTGCAAG+AGG | 0.584254 | 2_3:-25956479 | None:intergenic |
| GAGTAAGTGATTGAGGCGAG+TGG | 0.585127 | 2_3:-25955073 | None:intergenic |
| CCATGGTAAGTGCGCCGAGG+CGG | 0.587717 | 2_3:-25955146 | None:intergenic |
| ATCATGCACCTCCACCGCGT+TGG | 0.596653 | 2_3:-25955256 | None:intergenic |
| CTCGAGAAGATTCTCATCGA+AGG | 0.597081 | 2_3:+25958417 | Msa0285880:CDS |
| TATAGCAATTTAGAGAGAGA+TGG | 0.597195 | 2_3:-25958497 | None:intergenic |
| ATGCAGAATCACCAACTGAA+AGG | 0.598509 | 2_3:-25958380 | None:intergenic |
| GAAGGGAGCAGTAGTGAATG+GGG | 0.598831 | 2_3:-25954924 | None:intergenic |
| AGGGCAGAGAGCTACAACGT+TGG | 0.602461 | 2_3:-25958042 | None:intergenic |
| GGTGTGGAGGAGGAGGCGGA+GGG | 0.603274 | 2_3:-25955034 | None:intergenic |
| CAGCCATGGTAAGTGCGCCG+AGG | 0.604520 | 2_3:-25955149 | None:intergenic |
| TTATGATCCACGTATGTGAA+GGG | 0.607337 | 2_3:-25958061 | None:intergenic |
| GTACATTGCTTAACATATGG+AGG | 0.607730 | 2_3:+25959152 | Msa0285880:CDS |
| ATCTCAAAATGACGACGTGG+CGG | 0.612225 | 2_3:+25955116 | Msa0285880:CDS |
| GGACCCTATCAATTTCGGCT+GGG | 0.618597 | 2_3:+25958989 | Msa0285880:CDS |
| TCAGCATATAAAGTCCGCGC+TGG | 0.621347 | 2_3:+25958531 | Msa0285880:CDS |
| TGAGAAACCAAATGGGAATG+GGG | 0.624351 | 2_3:-25959200 | None:intergenic |
| GAATAGATAGCAAGCATTAG+GGG | 0.624978 | 2_3:-25955346 | None:intergenic |
| TTACCCAGCCGAAATTGATA+GGG | 0.626489 | 2_3:-25958992 | None:intergenic |
| AAAGAAGGACGGGTGATCTG+TGG | 0.627550 | 2_3:+25956387 | Msa0285880:intron |
| CACTGCACAGAGAGCAACAG+TGG | 0.628872 | 2_3:-25955229 | None:intergenic |
| GGAAGGGAGGTGGTGTTCGG+CGG | 0.631297 | 2_3:-25954983 | None:intergenic |
| AGCAGTAGTGAATTTGCACA+AGG | 0.637478 | 2_3:+25955610 | Msa0285880:CDS |
| TGCAGTGCTAACCAACGCGG+TGG | 0.638145 | 2_3:+25955245 | Msa0285880:CDS |
| GAGTGTGGAGATGGGCGTTG+TGG | 0.641846 | 2_3:-25954843 | None:intergenic |
| AGGGAGCAGTAGTGAATGGG+GGG | 0.646802 | 2_3:-25954922 | None:intergenic |
| GGATCAAACTCTCATCACCA+TGG | 0.649698 | 2_3:+25954735 | Msa0285880:exon |
| CGACGGTGCAGCGATTCTGG+AGG | 0.659267 | 2_3:+25955203 | Msa0285880:CDS |
| GGAGCAGTGAGTGTGGAGAT+GGG | 0.661915 | 2_3:-25954851 | None:intergenic |
| GTGGTCCAAAATTGATTGTG+AGG | 0.672157 | 2_3:+25956406 | Msa0285880:CDS |
| GTGGAGGTGCATGATAACGA+AGG | 0.699848 | 2_3:+25955264 | Msa0285880:CDS |
| CTGTGCAGTGCTAACCAACG+CGG | 0.703481 | 2_3:+25955242 | Msa0285880:CDS |
| AGTTATGAGAGAGAAACATG+AGG | 0.704662 | 2_3:-25954872 | None:intergenic |
| AACATCTCAAAATGACGACG+TGG | 0.725481 | 2_3:+25955113 | Msa0285880:CDS |
| GCCGCAGTAGAAAAGCAAAG+CGG | 0.760151 | 2_3:+25955171 | Msa0285880:CDS |
| CAGATAATAAATCACCAGCG+CGG | 0.796906 | 2_3:-25958545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAAAAATTAATTAATTG+AGG | + | chr2_3:25956348-25956367 | Msa0285880:intron | 10.0% |
| !!! | TATATCAATTTTTTATCAAT+TGG | + | chr2_3:25956794-25956813 | Msa0285880:intron | 10.0% |
| !! | AAAGAAAAATAAATTACTTG+TGG | - | chr2_3:25955450-25955469 | None:intergenic | 15.0% |
| !! | TATGTTAAACAATTCATATT+TGG | + | chr2_3:25955693-25955712 | Msa0285880:intron | 15.0% |
| !! | ATGTTAAACAATTCATATTT+GGG | + | chr2_3:25955694-25955713 | Msa0285880:intron | 15.0% |
| !!! | ACATTTTCTCAAATTATTAT+CGG | - | chr2_3:25955744-25955763 | None:intergenic | 15.0% |
| !! | TATAATATAAACCATCAATT+TGG | + | chr2_3:25957067-25957086 | Msa0285880:intron | 15.0% |
| !!! | TGTTATATTTGCTACATAAT+TGG | + | chr2_3:25955657-25955676 | Msa0285880:intron | 20.0% |
| !! | TATTCTTAATGTATCAAGTT+AGG | + | chr2_3:25955859-25955878 | Msa0285880:intron | 20.0% |
| !! | ATTCTTAATGTATCAAGTTA+GGG | + | chr2_3:25955860-25955879 | Msa0285880:intron | 20.0% |
| !!! | TATTTTGAAAAGTAACTAGT+GGG | + | chr2_3:25956179-25956198 | Msa0285880:intron | 20.0% |
| !! | TGATGAATTGAGAATAATTT+AGG | + | chr2_3:25956208-25956227 | Msa0285880:intron | 20.0% |
| !! | GATGAATTGAGAATAATTTA+GGG | + | chr2_3:25956209-25956228 | Msa0285880:intron | 20.0% |
| !! | AGTTGTGTAAACATTTAATT+TGG | - | chr2_3:25956293-25956312 | None:intergenic | 20.0% |
| !! | AGTATCAAGAAAATTAGAAA+GGG | + | chr2_3:25956429-25956448 | Msa0285880:CDS | 20.0% |
| !! | TTTATTAAATCCTAGGATTA+TGG | + | chr2_3:25956771-25956790 | Msa0285880:intron | 20.0% |
| !! | GAAATTAAGTCAAAAAAATG+TGG | - | chr2_3:25957154-25957173 | None:intergenic | 20.0% |
| !! | TTCAAGATATATTATTTCCA+AGG | - | chr2_3:25957647-25957666 | None:intergenic | 20.0% |
| !!! | TGGATAGATTTTGTATTAAA+AGG | - | chr2_3:25957682-25957701 | None:intergenic | 20.0% |
| !! | AGTTTCCTAAATTCATAAAT+GGG | - | chr2_3:25957776-25957795 | None:intergenic | 20.0% |
| !! | ACAATTTCATCTAATTTATG+AGG | - | chr2_3:25957841-25957860 | None:intergenic | 20.0% |
| !!! | AATTTGTATTTGGCTTTTTA+GGG | + | chr2_3:25957971-25957990 | Msa0285880:intron | 20.0% |
| !!! | ATTGATATTCTAGTTTAGTT+AGG | + | chr2_3:25958104-25958123 | Msa0285880:intron | 20.0% |
| !! | CTAATATTGTATTATTGTTC+AGG | + | chr2_3:25958245-25958264 | Msa0285880:intron | 20.0% |
| !!! | TAAGTTTCTTAATGTTGATT+TGG | + | chr2_3:25958761-25958780 | Msa0285880:CDS | 20.0% |
| !! | AAAAAAATTCACTAGATGTT+CGG | + | chr2_3:25959021-25959040 | Msa0285880:CDS | 20.0% |
| !!! | TTATTGGCTTATATATGTTA+TGG | + | chr2_3:25959176-25959195 | Msa0285880:CDS | 20.0% |
| !! | TTTGAGATGTTAGTAAATGA+CGG | - | chr2_3:25955104-25955123 | None:intergenic | 25.0% |
| ! | ATTTATCTTGTGTAATCACA+TGG | + | chr2_3:25955764-25955783 | Msa0285880:intron | 25.0% |
| ! | TTTATCTTGTGTAATCACAT+GGG | + | chr2_3:25955765-25955784 | Msa0285880:intron | 25.0% |
| !!! | TAAGATACGCTTTTTATTGA+AGG | - | chr2_3:25955824-25955843 | None:intergenic | 25.0% |
| !! | AAGCTATAAACTATTTTCAG+AGG | - | chr2_3:25956014-25956033 | None:intergenic | 25.0% |
| ! | TTATACATTAGTGCTTATCA+TGG | + | chr2_3:25956081-25956100 | Msa0285880:intron | 25.0% |
| !!! | CACTAGTTACTTTTCAAAAT+AGG | - | chr2_3:25956180-25956199 | None:intergenic | 25.0% |
| !!! | CTATTTTGAAAAGTAACTAG+TGG | + | chr2_3:25956178-25956197 | Msa0285880:intron | 25.0% |
| ! | TCATTATATGTCTATTGTTC+AGG | + | chr2_3:25956237-25956256 | Msa0285880:intron | 25.0% |
| !! | TGATGATATGCTTAGATTTT+TGG | + | chr2_3:25956323-25956342 | Msa0285880:intron | 25.0% |
| !!! | GATTTTTTGCATGAAAAAGA+AGG | + | chr2_3:25956372-25956391 | Msa0285880:intron | 25.0% |
| ! | GAGTATCAAGAAAATTAGAA+AGG | + | chr2_3:25956428-25956447 | Msa0285880:CDS | 25.0% |
| ! | GTATCAAGAAAATTAGAAAG+GGG | + | chr2_3:25956430-25956449 | Msa0285880:CDS | 25.0% |
| ! | TATCAAGAAAATTAGAAAGG+GGG | + | chr2_3:25956431-25956450 | Msa0285880:CDS | 25.0% |
| !! | ATAAATTTGAAGCATACCTT+TGG | - | chr2_3:25956492-25956511 | None:intergenic | 25.0% |
| ! | AAAGGAATAATTATATGCTG+TGG | + | chr2_3:25956663-25956682 | Msa0285880:intron | 25.0% |
| !!! | AGTTGGTTTTATTAAATCCT+AGG | + | chr2_3:25956764-25956783 | Msa0285880:intron | 25.0% |
| ! | AATTGATATACCATAATCCT+AGG | - | chr2_3:25956784-25956803 | None:intergenic | 25.0% |
| ! | TCATGATGCTATTAATTAGT+GGG | + | chr2_3:25956818-25956837 | Msa0285880:intron | 25.0% |
| ! | AGAACAAAACTAACCAAAAT+AGG | - | chr2_3:25956864-25956883 | None:intergenic | 25.0% |
| ! | TAATTTCTTGAGTTTAGACT+TGG | + | chr2_3:25957167-25957186 | Msa0285880:intron | 25.0% |
| ! | TATGGACATTAATACACAAA+GGG | - | chr2_3:25957257-25957276 | None:intergenic | 25.0% |
| !!! | TGTCTTGTGTTATTACTTTT+AGG | + | chr2_3:25957344-25957363 | Msa0285880:intron | 25.0% |
| ! | CAGTTTCCTAAATTCATAAA+TGG | - | chr2_3:25957777-25957796 | None:intergenic | 25.0% |
| ! | TTCTAGTCTCAATTTGTATT+TGG | + | chr2_3:25957961-25957980 | Msa0285880:intron | 25.0% |
| !!! | CAATTTGTATTTGGCTTTTT+AGG | + | chr2_3:25957970-25957989 | Msa0285880:intron | 25.0% |
| !! | ATATTACAGAAAGCATATCT+GGG | - | chr2_3:25958184-25958203 | None:intergenic | 25.0% |
| !! | TACAATATTAGTTTCACTTC+CGG | - | chr2_3:25958236-25958255 | None:intergenic | 25.0% |
| ! | GTCTATGAAGAAATTGTAAT+TGG | - | chr2_3:25958310-25958329 | None:intergenic | 25.0% |
| ! | TATAACATCTTCAATGGAAT+CGG | - | chr2_3:25958352-25958371 | None:intergenic | 25.0% |
| !! | TAAATTTTGTGTAAGAAGCA+AGG | - | chr2_3:25958797-25958816 | None:intergenic | 25.0% |
| ! | CAAAATTTAAATGCTGTAAG+TGG | + | chr2_3:25958808-25958827 | Msa0285880:CDS | 25.0% |
| ! | AAAAAATTCACTAGATGTTC+GGG | + | chr2_3:25959022-25959041 | Msa0285880:CDS | 25.0% |
| ! | TTTTTGAACATGCTTTCTCT+TGG | + | chr2_3:25955307-25955326 | Msa0285880:CDS | 30.0% |
| AGAATAGATAGCAAGCATTA+GGG | - | chr2_3:25955350-25955369 | None:intergenic | 30.0% | |
| !! | TGTTGAGAATTTTGAGTGAA+TGG | - | chr2_3:25955426-25955445 | None:intergenic | 30.0% |
| ! | TGCTACATAATTGGTTAGTT+AGG | + | chr2_3:25955666-25955685 | Msa0285880:intron | 30.0% |
| TCAAATAAGTCAATCCATGT+AGG | - | chr2_3:25955886-25955905 | None:intergenic | 30.0% | |
| AATAAGCTGTATATCCAAAC+AGG | + | chr2_3:25956128-25956147 | Msa0285880:intron | 30.0% | |
| ATAAGCTGTATATCCAAACA+GGG | + | chr2_3:25956129-25956148 | Msa0285880:intron | 30.0% | |
| TGATATCACTCTTTCCAATT+TGG | - | chr2_3:25956264-25956283 | None:intergenic | 30.0% | |
| ! | TTTTGCATGAAAAAGAAGGA+CGG | + | chr2_3:25956376-25956395 | Msa0285880:intron | 30.0% |
| ! | ATACTCCTCACAATCAATTT+TGG | - | chr2_3:25956414-25956433 | None:intergenic | 30.0% |
| !!! | CGTATTAGTTTTTCATGCAT+TGG | + | chr2_3:25956518-25956537 | Msa0285880:intron | 30.0% |
| ATAATTATTCCTTTGCTGCT+TGG | - | chr2_3:25956657-25956676 | None:intergenic | 30.0% | |
| GAATAGATGGAATGTTGTAA+TGG | + | chr2_3:25956708-25956727 | Msa0285880:intron | 30.0% | |
| CTCATGATGCTATTAATTAG+TGG | + | chr2_3:25956817-25956836 | Msa0285880:intron | 30.0% | |
| ! | TGTATCTTTGAGTCCTATTT+TGG | + | chr2_3:25956848-25956867 | Msa0285880:intron | 30.0% |
| CTAGATGATTTCTATATCAC+TGG | + | chr2_3:25956885-25956904 | Msa0285880:intron | 30.0% | |
| TAAGTCAAAAAAATGTGGCA+TGG | - | chr2_3:25957149-25957168 | None:intergenic | 30.0% | |
| ATGGACATTAATACACAAAG+GGG | - | chr2_3:25957256-25957275 | None:intergenic | 30.0% | |
| CTATGGACATTAATACACAA+AGG | - | chr2_3:25957258-25957277 | None:intergenic | 30.0% | |
| CTTTGTGTATTAATGTCCAT+AGG | + | chr2_3:25957256-25957275 | Msa0285880:intron | 30.0% | |
| CCTTCGTTATTATACATGTA+CGG | + | chr2_3:25957371-25957390 | Msa0285880:intron | 30.0% | |
| CTTCGTTATTATACATGTAC+GGG | + | chr2_3:25957372-25957391 | Msa0285880:intron | 30.0% | |
| ! | TTTTGTCTACCGTAATATAC+AGG | - | chr2_3:25957409-25957428 | None:intergenic | 30.0% |
| !! | TCTGTAACTTGTCTCAATTT+TGG | + | chr2_3:25957488-25957507 | Msa0285880:intron | 30.0% |
| ! | TTTGTTGTATAGTATCTCCT+TGG | + | chr2_3:25957627-25957646 | Msa0285880:intron | 30.0% |
| AATATATGCTACATATCGAG+TGG | - | chr2_3:25957706-25957725 | None:intergenic | 30.0% | |
| TCTTGAAATACAATGACAAC+AGG | - | chr2_3:25957740-25957759 | None:intergenic | 30.0% | |
| TGAATTTAGGAAACTGTCAA+AGG | + | chr2_3:25957781-25957800 | Msa0285880:intron | 30.0% | |
| ! | TATTACAGAAAGCATATCTG+GGG | - | chr2_3:25958183-25958202 | None:intergenic | 30.0% |
| ! | CATATTACAGAAAGCATATC+TGG | - | chr2_3:25958185-25958204 | None:intergenic | 30.0% |
| ! | ACAATATTAGTTTCACTTCC+GGG | - | chr2_3:25958235-25958254 | None:intergenic | 30.0% |
| CTCTGATATAACATCTTCAA+TGG | - | chr2_3:25958358-25958377 | None:intergenic | 30.0% | |
| TATAGCAATTTAGAGAGAGA+TGG | - | chr2_3:25958500-25958519 | None:intergenic | 30.0% | |
| TCATATCAAAAGCTTTCGAT+TGG | - | chr2_3:25958593-25958612 | None:intergenic | 30.0% | |
| TAACAAAAAATATGCAGCAC+TGG | - | chr2_3:25958622-25958641 | None:intergenic | 30.0% | |
| !!! | TGCTGCATATTTTTTGTTAC+TGG | + | chr2_3:25958623-25958642 | Msa0285880:CDS | 30.0% |
| ! | TTGCATCAGTTGCTAATTTT+TGG | + | chr2_3:25958688-25958707 | Msa0285880:CDS | 30.0% |
| !! | TCAGTTGCTAATTTTTGGAT+AGG | + | chr2_3:25958693-25958712 | Msa0285880:CDS | 30.0% |
| ! | TTTAGAGCCTGTATGTTAAA+TGG | + | chr2_3:25958846-25958865 | Msa0285880:CDS | 30.0% |
| GATTTGACCATTTAACATAC+AGG | - | chr2_3:25958856-25958875 | None:intergenic | 30.0% | |
| CCTTGCATGATTTCAAAAAA+TGG | - | chr2_3:25958971-25958990 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGAAATCATGCA+AGG | + | chr2_3:25958968-25958987 | Msa0285880:CDS | 30.0% |
| !! | GTAACACATATTTTTCAGCT+TGG | + | chr2_3:25959128-25959147 | Msa0285880:CDS | 30.0% |
| CTTAACATATGGAGGTTTAT+TGG | + | chr2_3:25959160-25959179 | Msa0285880:CDS | 30.0% | |
| AGTTATGAGAGAGAAACATG+AGG | - | chr2_3:25954875-25954894 | None:intergenic | 35.0% | |
| GAATAGATAGCAAGCATTAG+GGG | - | chr2_3:25955349-25955368 | None:intergenic | 35.0% | |
| GAGAATAGATAGCAAGCATT+AGG | - | chr2_3:25955351-25955370 | None:intergenic | 35.0% | |
| TGTGTTATGCAGATAGATTG+TGG | + | chr2_3:25955577-25955596 | Msa0285880:intron | 35.0% | |
| ! | CAGATAGATTGTGGTGTTTT+TGG | + | chr2_3:25955586-25955605 | Msa0285880:intron | 35.0% |
| TTGAGTTTACCTACTGACAT+AGG | + | chr2_3:25955902-25955921 | Msa0285880:intron | 35.0% | |
| CTCATAAAACCTATGTCAGT+AGG | - | chr2_3:25955914-25955933 | None:intergenic | 35.0% | |
| AGAGTGGAAATTTGTGACTA+AGG | - | chr2_3:25956155-25956174 | None:intergenic | 35.0% | |
| ! | CTTTTCAAAATAGGAGAGAG+TGG | - | chr2_3:25956171-25956190 | None:intergenic | 35.0% |
| TCTATTGTTCAGGACCAAAT+TGG | + | chr2_3:25956247-25956266 | Msa0285880:intron | 35.0% | |
| ATTGGAAAGAGTGATATCAG+AGG | + | chr2_3:25956265-25956284 | Msa0285880:intron | 35.0% | |
| TTGGAAAGAGTGATATCAGA+GGG | + | chr2_3:25956266-25956285 | Msa0285880:intron | 35.0% | |
| TTTGCATGAAAAAGAAGGAC+GGG | + | chr2_3:25956377-25956396 | Msa0285880:intron | 35.0% | |
| ATAGCAACAGTGTGAATAGA+TGG | + | chr2_3:25956695-25956714 | Msa0285880:intron | 35.0% | |
| ! | TTACTAGCTGAAGTGAGTTT+TGG | + | chr2_3:25956741-25956760 | Msa0285880:intron | 35.0% |
| TGATTTCTATATCACTGGAG+TGG | + | chr2_3:25956890-25956909 | Msa0285880:intron | 35.0% | |
| TGATGTTCATGGTTATGTGT+AGG | + | chr2_3:25956917-25956936 | Msa0285880:intron | 35.0% | |
| ! | TAAACCATCAATTTGGTGAG+TGG | + | chr2_3:25957074-25957093 | Msa0285880:intron | 35.0% |
| ATTACCACTCACCAAATTGA+TGG | - | chr2_3:25957081-25957100 | None:intergenic | 35.0% | |
| TGTCATTGCTCATTTCTCAT+TGG | - | chr2_3:25957294-25957313 | None:intergenic | 35.0% | |
| GACAGTGATAAATGAAGTTG+TGG | + | chr2_3:25957310-25957329 | Msa0285880:intron | 35.0% | |
| CCGTACATGTATAATAACGA+AGG | - | chr2_3:25957374-25957393 | None:intergenic | 35.0% | |
| GTTATTATACATGTACGGGT+TGG | + | chr2_3:25957376-25957395 | Msa0285880:intron | 35.0% | |
| GGCTTGAATCCTGTATATTA+CGG | + | chr2_3:25957397-25957416 | Msa0285880:intron | 35.0% | |
| CCATTGAAAAAGAGATACAG+TGG | - | chr2_3:25957584-25957603 | None:intergenic | 35.0% | |
| !!! | CCACTGTATCTCTTTTTCAA+TGG | + | chr2_3:25957581-25957600 | Msa0285880:intron | 35.0% |
| TCCTGCCCATTTATGAATTT+AGG | + | chr2_3:25957768-25957787 | Msa0285880:intron | 35.0% | |
| TCCTAAATTCATAAATGGGC+AGG | - | chr2_3:25957772-25957791 | None:intergenic | 35.0% | |
| TCAAACAAGATCTGAGAAAG+AGG | - | chr2_3:25957907-25957926 | None:intergenic | 35.0% | |
| !! | TTTTTAGGGAACGAGACAAT+CGG | + | chr2_3:25957985-25958004 | Msa0285880:intron | 35.0% |
| TTATGATCCACGTATGTGAA+GGG | - | chr2_3:25958064-25958083 | None:intergenic | 35.0% | |
| TTTATGATCCACGTATGTGA+AGG | - | chr2_3:25958065-25958084 | None:intergenic | 35.0% | |
| TCCATGAAATGTTTGACGAA+AGG | - | chr2_3:25958134-25958153 | None:intergenic | 35.0% | |
| ATAAATATTCGTAACTCGCC+CGG | + | chr2_3:25958214-25958233 | Msa0285880:intron | 35.0% | |
| CAGGAAATATCTGTTCTTTG+TGG | + | chr2_3:25958264-25958283 | Msa0285880:intron | 35.0% | |
| ! | ATATCAGAGTACCTTTCAGT+TGG | + | chr2_3:25958369-25958388 | Msa0285880:CDS | 35.0% |
| ATTTAGAGAGAGATGGTGAA+GGG | - | chr2_3:25958493-25958512 | None:intergenic | 35.0% | |
| AATTTAGAGAGAGATGGTGA+AGG | - | chr2_3:25958494-25958513 | None:intergenic | 35.0% | |
| !!! | GCATATTTTTTGTTACTGGC+AGG | + | chr2_3:25958627-25958646 | Msa0285880:CDS | 35.0% |
| TTAACTCTTACCAGAAGTTC+AGG | + | chr2_3:25958732-25958751 | Msa0285880:CDS | 35.0% | |
| TGTAAGAAGCAAGGTTTGAA+AGG | - | chr2_3:25958788-25958807 | None:intergenic | 35.0% | |
| ATGCTGTAAGTGGTCATTAA+TGG | + | chr2_3:25958818-25958837 | Msa0285880:CDS | 35.0% | |
| TGCTGTAAGTGGTCATTAAT+GGG | + | chr2_3:25958819-25958838 | Msa0285880:CDS | 35.0% | |
| CAGACATTACTCGTAATGTT+TGG | + | chr2_3:25958925-25958944 | Msa0285880:CDS | 35.0% | |
| AAAAATGGCAATCATAGACG+AGG | - | chr2_3:25958956-25958975 | None:intergenic | 35.0% | |
| CATGAATCTGTGAATAGAAC+TGG | + | chr2_3:25959077-25959096 | Msa0285880:CDS | 35.0% | |
| GGTGTACATTGCTTAACATA+TGG | + | chr2_3:25959149-25959168 | Msa0285880:CDS | 35.0% | |
| GTACATTGCTTAACATATGG+AGG | + | chr2_3:25959152-25959171 | Msa0285880:CDS | 35.0% | |
| TTGAACCTGAGAAACCAAAT+GGG | - | chr2_3:25959210-25959229 | None:intergenic | 35.0% | |
| TTTGAACCTGAGAAACCAAA+TGG | - | chr2_3:25959211-25959230 | None:intergenic | 35.0% | |
| AACTCTCATCACCATGGAAA+TGG | + | chr2_3:25954741-25954760 | Msa0285880:exon | 40.0% | |
| GGATTATTGGGATTGGGAAT+GGG | - | chr2_3:25954904-25954923 | None:intergenic | 40.0% | |
| TAGTGAATGGGGGGATTATT+GGG | - | chr2_3:25954916-25954935 | None:intergenic | 40.0% | |
| GGTTAGTGAGTAAGTGATTG+AGG | - | chr2_3:25955083-25955102 | None:intergenic | 40.0% | |
| AACATCTCAAAATGACGACG+TGG | + | chr2_3:25955113-25955132 | Msa0285880:CDS | 40.0% | |
| AGAAAGCAGAGAAGAAGAAG+TGG | - | chr2_3:25955379-25955398 | None:intergenic | 40.0% | |
| GAATGGAACAATGCGAAGTT+TGG | - | chr2_3:25955409-25955428 | None:intergenic | 40.0% | |
| AGCAGTAGTGAATTTGCACA+AGG | + | chr2_3:25955610-25955629 | Msa0285880:CDS | 40.0% | |
| !! | CACATGGGTTAGTATTGTGT+CGG | + | chr2_3:25955780-25955799 | Msa0285880:intron | 40.0% |
| GTGGTCCAAAATTGATTGTG+AGG | + | chr2_3:25956406-25956425 | Msa0285880:CDS | 40.0% | |
| GAAAATTAGAAAGGGGGAAG+AGG | + | chr2_3:25956437-25956456 | Msa0285880:CDS | 40.0% | |
| GATAAACAAACCAGTACGAG+TGG | + | chr2_3:25956551-25956570 | Msa0285880:intron | 40.0% | |
| ATGGTTATGTGTAGGAGCAA+TGG | + | chr2_3:25956925-25956944 | Msa0285880:intron | 40.0% | |
| TATGTGTAGGAGCAATGGTT+TGG | + | chr2_3:25956930-25956949 | Msa0285880:intron | 40.0% | |
| !!! | TAGGAGCAATGGTTTGGTTT+TGG | + | chr2_3:25956936-25956955 | Msa0285880:intron | 40.0% |
| GATGTGCAAGGAATGACAAA+AGG | - | chr2_3:25956994-25957013 | None:intergenic | 40.0% | |
| TTCCCATTGTATGGAAACAG+GGG | - | chr2_3:25957204-25957223 | None:intergenic | 40.0% | |
| CTTCCCATTGTATGGAAACA+GGG | - | chr2_3:25957205-25957224 | None:intergenic | 40.0% | |
| CTGTAAAGCTTCCCATTGTA+TGG | - | chr2_3:25957213-25957232 | None:intergenic | 40.0% | |
| GATACAGTGGTTTCTCAGTA+TGG | - | chr2_3:25957571-25957590 | None:intergenic | 40.0% | |
| TATGCTACATATCGAGTGGA+TGG | - | chr2_3:25957702-25957721 | None:intergenic | 40.0% | |
| AACAAGATCTGAGAAAGAGG+AGG | - | chr2_3:25957904-25957923 | None:intergenic | 40.0% | |
| CGGAACTATGGTCTAAGTAT+CGG | + | chr2_3:25958005-25958024 | Msa0285880:CDS | 40.0% | |
| TGAAATGTTTGACGAAAGGC+TGG | - | chr2_3:25958130-25958149 | None:intergenic | 40.0% | |
| GCCTTTCGTCAAACATTTCA+TGG | + | chr2_3:25958130-25958149 | Msa0285880:intron | 40.0% | |
| GTTCTTTGTGGAGATTCATC+TGG | + | chr2_3:25958276-25958295 | Msa0285880:CDS | 40.0% | |
| ATGCAGAATCACCAACTGAA+AGG | - | chr2_3:25958383-25958402 | None:intergenic | 40.0% | |
| TTTAGAGAGAGATGGTGAAG+GGG | - | chr2_3:25958492-25958511 | None:intergenic | 40.0% | |
| CAGATAATAAATCACCAGCG+CGG | - | chr2_3:25958548-25958567 | None:intergenic | 40.0% | |
| ! | CGAAAGCTTTTGATATGAGC+AGG | + | chr2_3:25958595-25958614 | Msa0285880:CDS | 40.0% |
| !! | GCTAATTTTTGGATAGGAGC+TGG | + | chr2_3:25958699-25958718 | Msa0285880:CDS | 40.0% |
| TGCAAGGACCCTATCAATTT+CGG | + | chr2_3:25958984-25959003 | Msa0285880:CDS | 40.0% | |
| TTACCCAGCCGAAATTGATA+GGG | - | chr2_3:25958995-25959014 | None:intergenic | 40.0% | |
| ATTACCCAGCCGAAATTGAT+AGG | - | chr2_3:25958996-25959015 | None:intergenic | 40.0% | |
| TGAGAAACCAAATGGGAATG+GGG | - | chr2_3:25959203-25959222 | None:intergenic | 40.0% | |
| CTGAGAAACCAAATGGGAAT+GGG | - | chr2_3:25959204-25959223 | None:intergenic | 40.0% | |
| GGATCAAACTCTCATCACCA+TGG | + | chr2_3:25954735-25954754 | Msa0285880:exon | 45.0% | |
| TTGTGGAGAGAGAAAGAGAG+TGG | - | chr2_3:25954829-25954848 | None:intergenic | 45.0% | |
| TTATTGGGATTGGGAATGGG+AGG | - | chr2_3:25954901-25954920 | None:intergenic | 45.0% | |
| GGGATTATTGGGATTGGGAA+TGG | - | chr2_3:25954905-25954924 | None:intergenic | 45.0% | |
| ATGGGGGGATTATTGGGATT+GGG | - | chr2_3:25954910-25954929 | None:intergenic | 45.0% | |
| AATGGGGGGATTATTGGGAT+TGG | - | chr2_3:25954911-25954930 | None:intergenic | 45.0% | |
| GTAGTGAATGGGGGGATTAT+TGG | - | chr2_3:25954917-25954936 | None:intergenic | 45.0% | |
| TGAAGGGAGCAGTAGTGAAT+GGG | - | chr2_3:25954928-25954947 | None:intergenic | 45.0% | |
| ATCTCAAAATGACGACGTGG+CGG | + | chr2_3:25955116-25955135 | Msa0285880:CDS | 45.0% | |
| !! | ACCGCTTTGCTTTTCTACTG+CGG | - | chr2_3:25955175-25955194 | None:intergenic | 45.0% |
| CAGAGAAGAAGAAGTGGAGA+AGG | - | chr2_3:25955373-25955392 | None:intergenic | 45.0% | |
| !! | ATTGTGTCGGTGTCAGACAT+CGG | + | chr2_3:25955793-25955812 | Msa0285880:intron | 45.0% |
| GTATCAAGTTAGGGCCTACA+TGG | + | chr2_3:25955869-25955888 | Msa0285880:intron | 45.0% | |
| TTTGTGACTAAGGCCCTGTT+TGG | - | chr2_3:25956145-25956164 | None:intergenic | 45.0% | |
| GATATAGCACCAAGCAGCAA+AGG | + | chr2_3:25956645-25956664 | Msa0285880:intron | 45.0% | |
| !!! | GCTGAAGTGAGTTTTGGAGT+TGG | + | chr2_3:25956747-25956766 | Msa0285880:intron | 45.0% |
| GTCATTCCTTGCACATCTTG+TGG | + | chr2_3:25956997-25957016 | Msa0285880:intron | 45.0% | |
| TTCCTTGCACATCTTGTGGT+TGG | + | chr2_3:25957001-25957020 | Msa0285880:intron | 45.0% | |
| ATCCAACCACAAGATGTGCA+AGG | - | chr2_3:25957006-25957025 | None:intergenic | 45.0% | |
| ACACCCCTGTTTCCATACAA+TGG | + | chr2_3:25957198-25957217 | Msa0285880:intron | 45.0% | |
| CACCCCTGTTTCCATACAAT+GGG | + | chr2_3:25957199-25957218 | Msa0285880:intron | 45.0% | |
| GCTTCCCATTGTATGGAAAC+AGG | - | chr2_3:25957206-25957225 | None:intergenic | 45.0% | |
| ATGTCCATAGGCTGTAGCAA+TGG | + | chr2_3:25957268-25957287 | Msa0285880:intron | 45.0% | |
| GAACGAGACAATCGGAACTA+TGG | + | chr2_3:25957993-25958012 | Msa0285880:CDS | 45.0% | |
| CTCGAGAAGATTCTCATCGA+AGG | + | chr2_3:25958417-25958436 | Msa0285880:CDS | 45.0% | |
| ! | CGCGCTGGTGATTTATTATC+TGG | + | chr2_3:25958546-25958565 | Msa0285880:CDS | 45.0% |
| CTCTTACCAGAAGTTCAGGA+TGG | + | chr2_3:25958736-25958755 | Msa0285880:CDS | 45.0% | |
| CTTACTCCATCCTGAACTTC+TGG | - | chr2_3:25958745-25958764 | None:intergenic | 45.0% | |
| CGGGCTCATGATATCAAAAC+TGG | + | chr2_3:25959041-25959060 | Msa0285880:CDS | 45.0% | |
| TTATGGTCCCCATTCCCATT+TGG | + | chr2_3:25959193-25959212 | Msa0285880:CDS | 45.0% | |
| CCTGAGAAACCAAATGGGAA+TGG | - | chr2_3:25959205-25959224 | None:intergenic | 45.0% | |
| ! | CCATTCCCATTTGGTTTCTC+AGG | + | chr2_3:25959202-25959221 | Msa0285880:CDS | 45.0% |
| CATCACCATGGAAATGGAGC+TGG | + | chr2_3:25954747-25954766 | Msa0285880:exon | 50.0% | |
| CATCTCCAGCTCCATTTCCA+TGG | - | chr2_3:25954755-25954774 | None:intergenic | 50.0% | |
| GAGAAAGAGAGTGGAGTGAG+CGG | - | chr2_3:25954820-25954839 | None:intergenic | 50.0% | |
| AACATGAGGAGCAGTGAGTG+TGG | - | chr2_3:25954861-25954880 | None:intergenic | 50.0% | |
| AAGGGAGCAGTAGTGAATGG+GGG | - | chr2_3:25954926-25954945 | None:intergenic | 50.0% | |
| GAAGGGAGCAGTAGTGAATG+GGG | - | chr2_3:25954927-25954946 | None:intergenic | 50.0% | |
| GTGAAGGGAGCAGTAGTGAA+TGG | - | chr2_3:25954929-25954948 | None:intergenic | 50.0% | |
| AGTGATTGAGGCGAGTGGAA+GGG | - | chr2_3:25955071-25955090 | None:intergenic | 50.0% | |
| AAGTGATTGAGGCGAGTGGA+AGG | - | chr2_3:25955072-25955091 | None:intergenic | 50.0% | |
| GAGTAAGTGATTGAGGCGAG+TGG | - | chr2_3:25955076-25955095 | None:intergenic | 50.0% | |
| GCCGCAGTAGAAAAGCAAAG+CGG | + | chr2_3:25955171-25955190 | Msa0285880:CDS | 50.0% | |
| ! | GTGGAGGTGCATGATAACGA+AGG | + | chr2_3:25955264-25955283 | Msa0285880:CDS | 50.0% |
| GATAACGAAGGATGCGCACT+CGG | + | chr2_3:25955276-25955295 | Msa0285880:CDS | 50.0% | |
| ATAACGAAGGATGCGCACTC+GGG | + | chr2_3:25955277-25955296 | Msa0285880:CDS | 50.0% | |
| !! | TTGTGTCGGTGTCAGACATC+GGG | + | chr2_3:25955794-25955813 | Msa0285880:intron | 50.0% |
| AAAGAAGGACGGGTGATCTG+TGG | + | chr2_3:25956387-25956406 | Msa0285880:intron | 50.0% | |
| TACTGACCTCTTGCAGCCAA+AGG | + | chr2_3:25956473-25956492 | Msa0285880:CDS | 50.0% | |
| AGCATACCTTTGGCTGCAAG+AGG | - | chr2_3:25956482-25956501 | None:intergenic | 50.0% | |
| CAAACCAGTACGAGTGGAAG+AGG | + | chr2_3:25956557-25956576 | Msa0285880:intron | 50.0% | |
| TTCTCCTCTTCCACTCGTAC+TGG | - | chr2_3:25956564-25956583 | None:intergenic | 50.0% | |
| GGAGTGGATGCTGATGTTCA+TGG | + | chr2_3:25956906-25956925 | Msa0285880:intron | 50.0% | |
| TTGGCCATTGCTACAGCCTA+TGG | - | chr2_3:25957275-25957294 | None:intergenic | 50.0% | |
| TCAGCATATAAAGTCCGCGC+TGG | + | chr2_3:25958531-25958550 | Msa0285880:CDS | 50.0% | |
| AGGACCCTATCAATTTCGGC+TGG | + | chr2_3:25958988-25959007 | Msa0285880:CDS | 50.0% | |
| GGACCCTATCAATTTCGGCT+GGG | + | chr2_3:25958989-25959008 | Msa0285880:CDS | 50.0% | |
| AAAGAGAGTGGAGTGAGCGG+TGG | - | chr2_3:25954817-25954836 | None:intergenic | 55.0% | |
| GGAGCAGTGAGTGTGGAGAT+GGG | - | chr2_3:25954854-25954873 | None:intergenic | 55.0% | |
| AGGAGCAGTGAGTGTGGAGA+TGG | - | chr2_3:25954855-25954874 | None:intergenic | 55.0% | |
| TTGGGATTGGGAATGGGAGG+TGG | - | chr2_3:25954898-25954917 | None:intergenic | 55.0% | |
| AGGGAGCAGTAGTGAATGGG+GGG | - | chr2_3:25954925-25954944 | None:intergenic | 55.0% | |
| ATGGGAGGTGGAGCAGTGAA+GGG | - | chr2_3:25954944-25954963 | None:intergenic | 55.0% | |
| AATGGGAGGTGGAGCAGTGA+AGG | - | chr2_3:25954945-25954964 | None:intergenic | 55.0% | |
| GGAGAGGGGGATTGAGGAAT+GGG | - | chr2_3:25954962-25954981 | None:intergenic | 55.0% | |
| AGGAGAGGGGGATTGAGGAA+TGG | - | chr2_3:25954963-25954982 | None:intergenic | 55.0% | |
| AGAGGAAGGGAGGTGGTGTT+CGG | - | chr2_3:25954989-25955008 | None:intergenic | 55.0% | |
| ATGTGGAAGAGGAAGGGAGG+TGG | - | chr2_3:25954996-25955015 | None:intergenic | 55.0% | |
| AGGATGTGGAAGAGGAAGGG+AGG | - | chr2_3:25954999-25955018 | None:intergenic | 55.0% | |
| GGGAGGATGTGGAAGAGGAA+GGG | - | chr2_3:25955002-25955021 | None:intergenic | 55.0% | |
| AGGGAGGATGTGGAAGAGGA+AGG | - | chr2_3:25955003-25955022 | None:intergenic | 55.0% | |
| GTGATTGAGGCGAGTGGAAG+GGG | - | chr2_3:25955070-25955089 | None:intergenic | 55.0% | |
| ! | CTTTTCTACTGCGGCAGCCA+TGG | - | chr2_3:25955166-25955185 | None:intergenic | 55.0% |
| CAAAGCGGTTGCAGCAACGA+CGG | + | chr2_3:25955186-25955205 | Msa0285880:CDS | 55.0% | |
| CACTGCACAGAGAGCAACAG+TGG | - | chr2_3:25955232-25955251 | None:intergenic | 55.0% | |
| CTGTGCAGTGCTAACCAACG+CGG | + | chr2_3:25955242-25955261 | Msa0285880:CDS | 55.0% | |
| AGGGCAGAGAGCTACAACGT+TGG | - | chr2_3:25958045-25958064 | None:intergenic | 55.0% | |
| CTCTCTGCCCTTCACATACG+TGG | + | chr2_3:25958054-25958073 | Msa0285880:CDS | 55.0% | |
| GGTGTAGACGAGCAGCTAGA+AGG | + | chr2_3:25958438-25958457 | Msa0285880:CDS | 55.0% | |
| ! | GAGTGTGGAGATGGGCGTTG+TGG | - | chr2_3:25954846-25954865 | None:intergenic | 60.0% |
| GGGGATTGAGGAATGGGAGG+TGG | - | chr2_3:25954956-25954975 | None:intergenic | 60.0% | |
| GAGGGGGATTGAGGAATGGG+AGG | - | chr2_3:25954959-25954978 | None:intergenic | 60.0% | |
| GAGGAGGGAGGATGTGGAAG+AGG | - | chr2_3:25955007-25955026 | None:intergenic | 60.0% | |
| !! | GAAGGTTGGTGTGGAGGAGG+AGG | - | chr2_3:25955044-25955063 | None:intergenic | 60.0% |
| !! | AGGGAAGGTTGGTGTGGAGG+AGG | - | chr2_3:25955047-25955066 | None:intergenic | 60.0% |
| !! | AAGGGGAGGGAAGGTTGGTG+TGG | - | chr2_3:25955053-25955072 | None:intergenic | 60.0% |
| AGTGGAAGGGGAGGGAAGGT+TGG | - | chr2_3:25955058-25955077 | None:intergenic | 60.0% | |
| TTGAGGCGAGTGGAAGGGGA+GGG | - | chr2_3:25955066-25955085 | None:intergenic | 60.0% | |
| ATTGAGGCGAGTGGAAGGGG+AGG | - | chr2_3:25955067-25955086 | None:intergenic | 60.0% | |
| CAACGACGGTGCAGCGATTC+TGG | + | chr2_3:25955200-25955219 | Msa0285880:CDS | 60.0% | |
| TGCAGTGCTAACCAACGCGG+TGG | + | chr2_3:25955245-25955264 | Msa0285880:CDS | 60.0% | |
| AGTGCTAACCAACGCGGTGG+AGG | + | chr2_3:25955248-25955267 | Msa0285880:CDS | 60.0% | |
| ATCATGCACCTCCACCGCGT+TGG | - | chr2_3:25955259-25955278 | None:intergenic | 60.0% | |
| TGGTGTTCGGCGGAGGAGAG+GGG | - | chr2_3:25954976-25954995 | None:intergenic | 65.0% | |
| GTGGTGTTCGGCGGAGGAGA+GGG | - | chr2_3:25954977-25954996 | None:intergenic | 65.0% | |
| GGAAGGGAGGTGGTGTTCGG+CGG | - | chr2_3:25954986-25955005 | None:intergenic | 65.0% | |
| ! | GGTTGGTGTGGAGGAGGAGG+CGG | - | chr2_3:25955041-25955060 | None:intergenic | 65.0% |
| !! | GGGAGGGAAGGTTGGTGTGG+AGG | - | chr2_3:25955050-25955069 | None:intergenic | 65.0% |
| CCATGGTAAGTGCGCCGAGG+CGG | - | chr2_3:25955149-25955168 | None:intergenic | 65.0% | |
| CAGCCATGGTAAGTGCGCCG+AGG | - | chr2_3:25955152-25955171 | None:intergenic | 65.0% | |
| CGACGGTGCAGCGATTCTGG+AGG | + | chr2_3:25955203-25955222 | Msa0285880:CDS | 65.0% | |
| GGCGGAGGAGAGGGGGATTG+AGG | - | chr2_3:25954968-25954987 | None:intergenic | 70.0% | |
| GGTGTTCGGCGGAGGAGAGG+GGG | - | chr2_3:25954975-25954994 | None:intergenic | 70.0% | |
| GGTGGTGTTCGGCGGAGGAG+AGG | - | chr2_3:25954978-25954997 | None:intergenic | 70.0% | |
| AGGGAGGTGGTGTTCGGCGG+AGG | - | chr2_3:25954983-25955002 | None:intergenic | 70.0% | |
| GGTGCGGAGGAGGGAGGATG+TGG | - | chr2_3:25955013-25955032 | None:intergenic | 70.0% | |
| GGTGTGGAGGAGGAGGCGGA+GGG | - | chr2_3:25955037-25955056 | None:intergenic | 70.0% | |
| TGGTGTGGAGGAGGAGGCGG+AGG | - | chr2_3:25955038-25955057 | None:intergenic | 70.0% | |
| GGCGAGTGGAAGGGGAGGGA+AGG | - | chr2_3:25955062-25955081 | None:intergenic | 70.0% | |
| ! | GTGGCGGAAACCGTCCGCCT+CGG | + | chr2_3:25955132-25955151 | Msa0285880:CDS | 70.0% |
| GGTAAGTGCGCCGAGGCGGA+CGG | - | chr2_3:25955145-25955164 | None:intergenic | 70.0% | |
| CCGCCTCGGCGCACTTACCA+TGG | + | chr2_3:25955146-25955165 | Msa0285880:CDS | 70.0% | |
| GTGGAGGAGGAGGCGGAGGG+CGG | - | chr2_3:25955034-25955053 | None:intergenic | 75.0% | |
| ! | GAGGGCGGTGCGGAGGAGGG+AGG | - | chr2_3:25955019-25955038 | None:intergenic | 80.0% |
| ! | GCGGAGGGCGGTGCGGAGGA+GGG | - | chr2_3:25955022-25955041 | None:intergenic | 80.0% |
| ! | GGAGGAGGCGGAGGGCGGTG+CGG | - | chr2_3:25955029-25955048 | None:intergenic | 80.0% |
| ! | GGCGGAGGGCGGTGCGGAGG+AGG | - | chr2_3:25955023-25955042 | None:intergenic | 85.0% |
| ! | GGAGGCGGAGGGCGGTGCGG+AGG | - | chr2_3:25955026-25955045 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 25954734 | 25959268 | 25954734 | ID=Msa0285880;Name=Msa0285880 |
| chr2_3 | mRNA | 25954734 | 25959268 | 25954734 | ID=Msa0285880-mRNA-1;Parent=Msa0285880;Name=Msa0285880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=20|1|0.8|1|1|1|5|0|648 |
| chr2_3 | exon | 25954734 | 25955452 | 25954734 | ID=Msa0285880-mRNA-1:exon:9533;Parent=Msa0285880-mRNA-1 |
| chr2_3 | exon | 25955589 | 25955631 | 25955589 | ID=Msa0285880-mRNA-1:exon:9534;Parent=Msa0285880-mRNA-1 |
| chr2_3 | exon | 25956391 | 25956494 | 25956391 | ID=Msa0285880-mRNA-1:exon:9535;Parent=Msa0285880-mRNA-1 |
| chr2_3 | exon | 25957992 | 25958090 | 25957992 | ID=Msa0285880-mRNA-1:exon:9536;Parent=Msa0285880-mRNA-1 |
| chr2_3 | exon | 25958267 | 25959268 | 25958267 | ID=Msa0285880-mRNA-1:exon:9537;Parent=Msa0285880-mRNA-1 |
| chr2_3 | five_prime_UTR | 25954734 | 25954753 | 25954734 | ID=Msa0285880-mRNA-1:five_prime_utr;Parent=Msa0285880-mRNA-1 |
| chr2_3 | CDS | 25954754 | 25955452 | 25954754 | ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1 |
| chr2_3 | CDS | 25955589 | 25955631 | 25955589 | ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1 |
| chr2_3 | CDS | 25956391 | 25956494 | 25956391 | ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1 |
| chr2_3 | CDS | 25957992 | 25958090 | 25957992 | ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1 |
| chr2_3 | CDS | 25958267 | 25959268 | 25958267 | ID=Msa0285880-mRNA-1:cds;Parent=Msa0285880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
