Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285970 | AES65705.1 | 87.454 | 271 | 32 | 1 | 3 | 271 | 11 | 281 | 3.37e-169 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285970 | sp|Q99091|CPRF3_PETCR | 42.857 | 84 | 46 | 1 | 184 | 265 | 192 | 275 | 1.17e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285970 | G7IST9 | 87.454 | 271 | 32 | 1 | 3 | 271 | 11 | 281 | 1.61e-169 | 479 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0285970 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285970 | MtrunA17_Chr1g0162721 | 63.107 | 309 | 63 | 7 | 12 | 271 | 1 | 307 | 3.59e-121 | 348 |
| Msa0285970 | MtrunA17_Chr2g0302481 | 67.788 | 208 | 41 | 2 | 64 | 271 | 7 | 188 | 9.68e-91 | 266 |
| Msa0285970 | MtrunA17_Chr2g0302501 | 82.906 | 117 | 18 | 1 | 3 | 117 | 11 | 127 | 7.54e-66 | 201 |
| Msa0285970 | MtrunA17_Chr4g0065261 | 59.551 | 89 | 35 | 1 | 183 | 271 | 88 | 175 | 2.25e-25 | 99.0 |
| Msa0285970 | MtrunA17_Chr8g0373571 | 44.318 | 88 | 49 | 0 | 178 | 265 | 252 | 339 | 1.03e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285970 | AT4G36730.2 | 36.190 | 105 | 61 | 1 | 161 | 265 | 201 | 299 | 4.95e-14 | 71.2 |
| Msa0285970 | AT4G36730.1 | 36.190 | 105 | 61 | 1 | 161 | 265 | 203 | 301 | 5.38e-14 | 71.2 |
Find 53 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGGACTGGCACAGAATT+TGG | 0.131374 | 2_3:-26134748 | Msa0285970:CDS |
| GCAAATAATTTGTTGAAATC+AGG | 0.241071 | 2_3:+26135294 | None:intergenic |
| TGGCAGACCTTACAATTTCT+TGG | 0.294838 | 2_3:-26135948 | Msa0285970:CDS |
| CGGAAATCTAACATGATTAC+TGG | 0.322511 | 2_3:-26134893 | Msa0285970:CDS |
| GTTTCTTCTGTGTACCATTT+CGG | 0.323377 | 2_3:+26135317 | None:intergenic |
| TCTGGACTGGCACAGAATTT+GGG | 0.326766 | 2_3:-26134747 | Msa0285970:CDS |
| AGATTTCCGCTTCGTGCTTA+AGG | 0.327244 | 2_3:+26134907 | None:intergenic |
| GATTTCAACAAATTATTTGC+TGG | 0.331658 | 2_3:-26135291 | Msa0285970:CDS |
| ACTGGCGAATCAAGAGAATA+TGG | 0.350738 | 2_3:-26135240 | Msa0285970:CDS |
| CACTCTTAAGGATGAAAATT+CGG | 0.352734 | 2_3:-26133860 | Msa0285970:CDS |
| GCTCAGTGAGCATTTGTGTT+AGG | 0.359601 | 2_3:+26133836 | None:intergenic |
| AAAGTTTCAAGTAGGCTTCA+TGG | 0.384295 | 2_3:+26133488 | None:intergenic |
| TGGAACAGGAAGAGCTAGTT+AGG | 0.389858 | 2_3:-26133545 | Msa0285970:intron |
| CACAAGTTTCACGAGCTTGA+TGG | 0.397225 | 2_3:-26135993 | Msa0285970:CDS |
| GATTTCCGCTTCGTGCTTAA+GGG | 0.399845 | 2_3:+26134908 | None:intergenic |
| CACACCTATGCTACCACATT+GGG | 0.421663 | 2_3:-26135803 | Msa0285970:CDS |
| TCAAAAGATAAACACTCTTA+AGG | 0.422261 | 2_3:-26133872 | Msa0285970:CDS |
| TGCTCTGAATCAATTTGTGC+TGG | 0.425495 | 2_3:-26135751 | Msa0285970:intron |
| AATAGATCTGCAATTGATTC+TGG | 0.425545 | 2_3:+26133513 | None:intergenic |
| AAGAAAGAATCCATTCCATT+TGG | 0.432084 | 2_3:-26135968 | Msa0285970:CDS |
| AAGATCAAAGATAAAGAAAC+AGG | 0.437513 | 2_3:-26134109 | Msa0285970:intron |
| CCAGTCATTAAACTTACATC+AGG | 0.439376 | 2_3:+26135258 | None:intergenic |
| CAAATAATTTGTTGAAATCA+GGG | 0.443190 | 2_3:+26135295 | None:intergenic |
| ACAAGTTTCACGAGCTTGAT+GGG | 0.447176 | 2_3:-26135992 | Msa0285970:CDS |
| TGTGGTAGCATAGGTGTGTT+TGG | 0.450209 | 2_3:+26135808 | None:intergenic |
| TTTGTTGCAGAAAATCCATC+TGG | 0.471248 | 2_3:-26134765 | Msa0285970:intron |
| GAAGAGCTAGTTAGGATGTA+TGG | 0.483100 | 2_3:-26133537 | Msa0285970:CDS |
| AATATTTATTCAGGAACGTA+CGG | 0.487079 | 2_3:-26136020 | None:intergenic |
| TGAGGCACCAAGAAATTGTA+AGG | 0.489679 | 2_3:+26135941 | None:intergenic |
| AAGTTTCAAGTAGGCTTCAT+GGG | 0.491094 | 2_3:+26133489 | None:intergenic |
| AAATTGTAAGGTCTGCCAAA+TGG | 0.515741 | 2_3:+26135953 | None:intergenic |
| ATATTTATTCAGGAACGTAC+GGG | 0.535447 | 2_3:-26136019 | None:intergenic |
| AAATTCTGTGCCAGTCCAGA+TGG | 0.539538 | 2_3:+26134750 | None:intergenic |
| GGAAATCTAACATGATTACT+GGG | 0.546159 | 2_3:-26134892 | Msa0285970:CDS |
| CAATGAAAACGATTCTATTG+AGG | 0.546332 | 2_3:-26133788 | Msa0285970:intron |
| GTAAGGTCTGCCAAATGGAA+TGG | 0.548289 | 2_3:+26135958 | None:intergenic |
| TCTAACATGATTACTGGGGA+TGG | 0.558549 | 2_3:-26134887 | Msa0285970:intron |
| GTATCCCAATGTGGTAGCAT+AGG | 0.563643 | 2_3:+26135799 | None:intergenic |
| ACACACCTATGCTACCACAT+TGG | 0.564050 | 2_3:-26135804 | Msa0285970:CDS |
| CCTGATGTAAGTTTAATGAC+TGG | 0.574077 | 2_3:-26135258 | Msa0285970:CDS |
| TGCAGAAAATCCATCTGGAC+TGG | 0.574891 | 2_3:-26134760 | Msa0285970:intron |
| ACATTGGGATACATCTATGC+AGG | 0.593850 | 2_3:-26135788 | Msa0285970:CDS |
| CATGATTTACTGACATCTTG+AGG | 0.595565 | 2_3:+26135923 | None:intergenic |
| TACGTGTGCAGTGCAGCAAG+TGG | 0.604727 | 2_3:-26135094 | Msa0285970:intron |
| CTGGACTGGCACAGAATTTG+GGG | 0.608435 | 2_3:-26134746 | Msa0285970:CDS |
| CAAGTTTCACGAGCTTGATG+GGG | 0.617197 | 2_3:-26135991 | Msa0285970:CDS |
| GAATTTGGGGACAGTCGTCA+AGG | 0.619324 | 2_3:-26134733 | Msa0285970:CDS |
| GAACAATCTATACCTCATTG+AGG | 0.632955 | 2_3:+26135179 | None:intergenic |
| GGAAGCAAGAGATTGACAGA+TGG | 0.638909 | 2_3:-26135073 | Msa0285970:CDS |
| GAAATCTAACATGATTACTG+GGG | 0.696860 | 2_3:-26134891 | Msa0285970:CDS |
| ATTCTCCCTTAAGCACGAAG+CGG | 0.702517 | 2_3:-26134913 | Msa0285970:CDS |
| TGCATAGATGTATCCCAATG+TGG | 0.712115 | 2_3:+26135790 | None:intergenic |
| ATAGGGATGGAACCTCAATG+AGG | 0.736670 | 2_3:-26135191 | Msa0285970:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTATATAAATATG+TGG | - | chr2_3:26134486-26134505 | Msa0285970:intron | 10.0% |
| !! | TTTACTATTAATTACAAAAA+AGG | - | chr2_3:26135827-26135846 | Msa0285970:intron | 10.0% |
| !!! | TTTTTTTATCATAGTTTCTA+TGG | - | chr2_3:26133905-26133924 | Msa0285970:intron | 15.0% |
| !!! | TATGGTATTCATTTTATATT+TGG | - | chr2_3:26133923-26133942 | Msa0285970:intron | 15.0% |
| !! | AAAATTGAACAAATAAGAAA+GGG | + | chr2_3:26135754-26135773 | None:intergenic | 15.0% |
| !! | TAAAATTGAACAAATAAGAA+AGG | + | chr2_3:26135755-26135774 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTCTACGTAAA+AGG | + | chr2_3:26133799-26133818 | None:intergenic | 20.0% |
| !! | AAGTGAAAAATTGTGATAAA+AGG | + | chr2_3:26133848-26133867 | None:intergenic | 20.0% |
| !! | GAATTCATATTCTTTATAGT+TGG | - | chr2_3:26134000-26134019 | Msa0285970:intron | 20.0% |
| !! | TCATAATACACAATTCAATA+TGG | + | chr2_3:26134104-26134123 | None:intergenic | 20.0% |
| !!! | ATAAAAGTGTTTATGCATTT+TGG | - | chr2_3:26134138-26134157 | Msa0285970:CDS | 20.0% |
| !!! | CAAATAATTTGTTGAAATCA+GGG | + | chr2_3:26134209-26134228 | None:intergenic | 20.0% |
| !! | TTTGTTCAAAAATTCTACTA+CGG | + | chr2_3:26135010-26135029 | None:intergenic | 20.0% |
| !! | GAATATGATTATAACTATAG+TGG | + | chr2_3:26135123-26135142 | None:intergenic | 20.0% |
| !!! | TGGTAACATTTTAACATAAA+AGG | + | chr2_3:26135258-26135277 | None:intergenic | 20.0% |
| !! | TGGTAAAAAGAAAAAGATAT+TGG | - | chr2_3:26135432-26135451 | Msa0285970:intron | 20.0% |
| !! | GTAGAAAAGAAAAACTATTT+GGG | + | chr2_3:26135469-26135488 | None:intergenic | 20.0% |
| !! | AGTAGAAAAGAAAAACTATT+TGG | + | chr2_3:26135470-26135489 | None:intergenic | 20.0% |
| !! | ATAAATACTAGAAAACAAGA+TGG | + | chr2_3:26135853-26135872 | None:intergenic | 20.0% |
| !! | CTACTAATTTAAGTATGATT+TGG | - | chr2_3:26135930-26135949 | Msa0285970:intron | 20.0% |
| ! | TATATTTGGCGTATATTTAG+TGG | - | chr2_3:26133937-26133956 | Msa0285970:intron | 25.0% |
| !! | TGGAATTTTCATATCACTTT+AGG | - | chr2_3:26133957-26133976 | Msa0285970:intron | 25.0% |
| !! | GGAATTTTCATATCACTTTA+GGG | - | chr2_3:26133958-26133977 | Msa0285970:intron | 25.0% |
| !! | GGGATTTTTCATATTTTCTA+TGG | - | chr2_3:26133978-26133997 | Msa0285970:intron | 25.0% |
| !!! | GCAAATAATTTGTTGAAATC+AGG | + | chr2_3:26134210-26134229 | None:intergenic | 25.0% |
| ! | GATTTCAACAAATTATTTGC+TGG | - | chr2_3:26134210-26134229 | Msa0285970:intron | 25.0% |
| ! | TTCTTCAGCAAAAAATGATA+GGG | - | chr2_3:26134293-26134312 | Msa0285970:intron | 25.0% |
| ! | CAGTAACAAAGTATGTTTAT+CGG | - | chr2_3:26134463-26134482 | Msa0285970:intron | 25.0% |
| !! | CAACTGTCACATAAAATTTT+CGG | - | chr2_3:26134531-26134550 | Msa0285970:intron | 25.0% |
| ! | TGATGCTCAACTAAAAAATA+TGG | - | chr2_3:26134813-26134832 | Msa0285970:intron | 25.0% |
| !! | TTTTCGTAGCATAAATGAAA+AGG | - | chr2_3:26134855-26134874 | Msa0285970:intron | 25.0% |
| ! | ATGTGGACATCATAATAAAA+GGG | + | chr2_3:26134943-26134962 | None:intergenic | 25.0% |
| ! | TATGTGGACATCATAATAAA+AGG | + | chr2_3:26134944-26134963 | None:intergenic | 25.0% |
| ! | AAAAATTCTACTACGGTATA+GGG | + | chr2_3:26135003-26135022 | None:intergenic | 25.0% |
| ! | AAGAAAGTTGGATTGATAAA+TGG | + | chr2_3:26135281-26135300 | None:intergenic | 25.0% |
| ! | AAGATCAAAGATAAAGAAAC+AGG | - | chr2_3:26135392-26135411 | Msa0285970:intron | 25.0% |
| !! | TCTTCATATTCTTTCTGAAA+AGG | + | chr2_3:26135603-26135622 | None:intergenic | 25.0% |
| ! | TCAAAAGATAAACACTCTTA+AGG | - | chr2_3:26135629-26135648 | Msa0285970:intron | 25.0% |
| ! | GCAATCTTGGATAATATTAA+AGG | + | chr2_3:26135911-26135930 | None:intergenic | 25.0% |
| ! | ACTTAAATTAGTAGCAATCT+TGG | + | chr2_3:26135924-26135943 | None:intergenic | 25.0% |
| !! | CTAATTTAAGTATGATTTGG+TGG | - | chr2_3:26135933-26135952 | Msa0285970:intron | 25.0% |
| AAGAAAGAATCCATTCCATT+TGG | - | chr2_3:26133533-26133552 | Msa0285970:CDS | 30.0% | |
| GATGTCAGTAAATCATGTTA+TGG | - | chr2_3:26133584-26133603 | Msa0285970:intron | 30.0% | |
| ATGAACGTTTCTTCAACTTA+GGG | - | chr2_3:26134072-26134091 | Msa0285970:intron | 30.0% | |
| CTTCTTCAGCAAAAAATGAT+AGG | - | chr2_3:26134292-26134311 | Msa0285970:intron | 30.0% | |
| ! | AATTAAATCCTTTTTGTCGC+AGG | - | chr2_3:26134565-26134584 | Msa0285970:intron | 30.0% |
| GGAAATCTAACATGATTACT+GGG | - | chr2_3:26134609-26134628 | Msa0285970:intron | 30.0% | |
| GAAATCTAACATGATTACTG+GGG | - | chr2_3:26134610-26134629 | Msa0285970:intron | 30.0% | |
| CAAAAATTCTACTACGGTAT+AGG | + | chr2_3:26135004-26135023 | None:intergenic | 30.0% | |
| ! | ACAAGTTGAAAAACTAACAC+AGG | + | chr2_3:26135145-26135164 | None:intergenic | 30.0% |
| ATAAAAGGCTCATATATGAC+AGG | + | chr2_3:26135243-26135262 | None:intergenic | 30.0% | |
| AAAGTTGGATTGATAAATGG+TGG | + | chr2_3:26135278-26135297 | None:intergenic | 30.0% | |
| CTTAGCAACATTAAGAAAGT+TGG | + | chr2_3:26135293-26135312 | None:intergenic | 30.0% | |
| TTAGTTGCATTTCATTTGAC+AGG | - | chr2_3:26135314-26135333 | Msa0285970:CDS | 30.0% | |
| CACTCTTAAGGATGAAAATT+CGG | - | chr2_3:26135641-26135660 | Msa0285970:intron | 30.0% | |
| ! | CTCAATAGAATCGTTTTCAT+TGG | + | chr2_3:26135715-26135734 | None:intergenic | 30.0% |
| CAATGAAAACGATTCTATTG+AGG | - | chr2_3:26135713-26135732 | Msa0285970:intron | 30.0% | |
| !! | ATTTAAGTATGATTTGGTGG+TGG | - | chr2_3:26135936-26135955 | Msa0285970:intron | 30.0% |
| ! | AATAGATCTGCAATTGATTC+TGG | + | chr2_3:26135991-26136010 | None:intergenic | 30.0% |
| AAATTGTAAGGTCTGCCAAA+TGG | + | chr2_3:26133551-26133570 | None:intergenic | 35.0% | |
| CATGATTTACTGACATCTTG+AGG | + | chr2_3:26133581-26133600 | None:intergenic | 35.0% | |
| ! | TCAATTTGTGCTGGTATCTT+TGG | - | chr2_3:26133759-26133778 | Msa0285970:intron | 35.0% |
| GATGAACGTTTCTTCAACTT+AGG | - | chr2_3:26134071-26134090 | Msa0285970:intron | 35.0% | |
| !! | AGTGTTTATGCATTTTGGTC+AGG | - | chr2_3:26134143-26134162 | Msa0285970:CDS | 35.0% |
| GTTTCTTCTGTGTACCATTT+CGG | + | chr2_3:26134187-26134206 | None:intergenic | 35.0% | |
| CCAGTCATTAAACTTACATC+AGG | + | chr2_3:26134246-26134265 | None:intergenic | 35.0% | |
| CCTGATGTAAGTTTAATGAC+TGG | - | chr2_3:26134243-26134262 | Msa0285970:intron | 35.0% | |
| !!! | CATTTTTTGCTGAAGAAGAC+TGG | + | chr2_3:26134290-26134309 | None:intergenic | 35.0% |
| TCAGCAAAAAATGATAGGGA+TGG | - | chr2_3:26134297-26134316 | Msa0285970:intron | 35.0% | |
| GAACAATCTATACCTCATTG+AGG | + | chr2_3:26134325-26134344 | None:intergenic | 35.0% | |
| TGTTCTTGTTCTTGTTCTTC+TGG | - | chr2_3:26134340-26134359 | Msa0285970:intron | 35.0% | |
| CGGAAATCTAACATGATTAC+TGG | - | chr2_3:26134608-26134627 | Msa0285970:intron | 35.0% | |
| AGAATAACAGTCTTGCATCT+TGG | - | chr2_3:26134713-26134732 | Msa0285970:CDS | 35.0% | |
| TTTGTTGCAGAAAATCCATC+TGG | - | chr2_3:26134736-26134755 | Msa0285970:CDS | 35.0% | |
| ATGATGTCCACATATGTGAT+AGG | - | chr2_3:26134950-26134969 | Msa0285970:intron | 35.0% | |
| TAGGCAGTGTAGTTAAATAG+AGG | - | chr2_3:26134969-26134988 | Msa0285970:intron | 35.0% | |
| !! | CAAGATATGCTTAGCTTTGT+TGG | - | chr2_3:26135097-26135116 | Msa0285970:intron | 35.0% |
| AAAGAAAAAGACTGTCGAAC+AGG | - | chr2_3:26135358-26135377 | Msa0285970:intron | 35.0% | |
| AGGTACATACGAAAATGCTT+TGG | - | chr2_3:26135412-26135431 | Msa0285970:intron | 35.0% | |
| ACAAGTTTCACGAGCTTGAT+GGG | - | chr2_3:26133509-26133528 | Msa0285970:CDS | 40.0% | |
| TGGCAGACCTTACAATTTCT+TGG | - | chr2_3:26133553-26133572 | Msa0285970:intron | 40.0% | |
| ! | TGAGGCACCAAGAAATTGTA+AGG | + | chr2_3:26133563-26133582 | None:intergenic | 40.0% |
| TGCATAGATGTATCCCAATG+TGG | + | chr2_3:26133714-26133733 | None:intergenic | 40.0% | |
| ACATTGGGATACATCTATGC+AGG | - | chr2_3:26133713-26133732 | Msa0285970:intron | 40.0% | |
| ! | TGCTCTGAATCAATTTGTGC+TGG | - | chr2_3:26133750-26133769 | Msa0285970:intron | 40.0% |
| ACTGGCGAATCAAGAGAATA+TGG | - | chr2_3:26134261-26134280 | Msa0285970:intron | 40.0% | |
| TCTAACATGATTACTGGGGA+TGG | - | chr2_3:26134614-26134633 | Msa0285970:intron | 40.0% | |
| TACTGGGGATGGTAAGATTA+TGG | - | chr2_3:26134625-26134644 | Msa0285970:intron | 40.0% | |
| TACACTGCCTATCACATATG+TGG | + | chr2_3:26134960-26134979 | None:intergenic | 40.0% | |
| GAAGAGCTAGTTAGGATGTA+TGG | - | chr2_3:26135964-26135983 | Msa0285970:CDS | 40.0% | |
| CACAAGTTTCACGAGCTTGA+TGG | - | chr2_3:26133508-26133527 | Msa0285970:CDS | 45.0% | |
| CAAGTTTCACGAGCTTGATG+GGG | - | chr2_3:26133510-26133529 | Msa0285970:CDS | 45.0% | |
| GTAAGGTCTGCCAAATGGAA+TGG | + | chr2_3:26133546-26133565 | None:intergenic | 45.0% | |
| TGTGGTAGCATAGGTGTGTT+TGG | + | chr2_3:26133696-26133715 | None:intergenic | 45.0% | |
| ACACACCTATGCTACCACAT+TGG | - | chr2_3:26133697-26133716 | Msa0285970:intron | 45.0% | |
| CACACCTATGCTACCACATT+GGG | - | chr2_3:26133698-26133717 | Msa0285970:intron | 45.0% | |
| GTATCCCAATGTGGTAGCAT+AGG | + | chr2_3:26133705-26133724 | None:intergenic | 45.0% | |
| !! | TGCACAGGCTTTTTCCGAAA+TGG | - | chr2_3:26134170-26134189 | Msa0285970:intron | 45.0% |
| ATAGGGATGGAACCTCAATG+AGG | - | chr2_3:26134310-26134329 | Msa0285970:intron | 45.0% | |
| GGAAGCAAGAGATTGACAGA+TGG | - | chr2_3:26134428-26134447 | Msa0285970:intron | 45.0% | |
| ATTCTCCCTTAAGCACGAAG+CGG | - | chr2_3:26134588-26134607 | Msa0285970:intron | 45.0% | |
| GATTTCCGCTTCGTGCTTAA+GGG | + | chr2_3:26134596-26134615 | None:intergenic | 45.0% | |
| AGATTTCCGCTTCGTGCTTA+AGG | + | chr2_3:26134597-26134616 | None:intergenic | 45.0% | |
| TGCAGAAAATCCATCTGGAC+TGG | - | chr2_3:26134741-26134760 | Msa0285970:CDS | 45.0% | |
| AAATTCTGTGCCAGTCCAGA+TGG | + | chr2_3:26134754-26134773 | None:intergenic | 45.0% | |
| !! | ATCTGGACTGGCACAGAATT+TGG | - | chr2_3:26134753-26134772 | Msa0285970:CDS | 45.0% |
| !! | TCTGGACTGGCACAGAATTT+GGG | - | chr2_3:26134754-26134773 | Msa0285970:CDS | 45.0% |
| GCTCAGTGAGCATTTGTGTT+AGG | + | chr2_3:26135668-26135687 | None:intergenic | 45.0% | |
| !! | GTATGATTTGGTGGTGGAAC+AGG | - | chr2_3:26135942-26135961 | Msa0285970:CDS | 45.0% |
| TGGAACAGGAAGAGCTAGTT+AGG | - | chr2_3:26135956-26135975 | Msa0285970:CDS | 45.0% | |
| !! | TTTTGGTCAGGTTGCTGCAC+AGG | - | chr2_3:26134155-26134174 | Msa0285970:CDS | 50.0% |
| GGGAGAATCCTGCGACAAAA+AGG | + | chr2_3:26134576-26134595 | None:intergenic | 50.0% | |
| !! | CTGGACTGGCACAGAATTTG+GGG | - | chr2_3:26134755-26134774 | Msa0285970:CDS | 50.0% |
| GAATTTGGGGACAGTCGTCA+AGG | - | chr2_3:26134768-26134787 | Msa0285970:intron | 50.0% | |
| TACGTGTGCAGTGCAGCAAG+TGG | - | chr2_3:26134407-26134426 | Msa0285970:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 26133494 | 26136029 | 26133494 | ID=Msa0285970;Name=Msa0285970 |
| chr2_3 | mRNA | 26133494 | 26136029 | 26133494 | ID=Msa0285970-mRNA-1;Parent=Msa0285970;Name=Msa0285970-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0.77|0.9|10|0|271 |
| chr2_3 | exon | 26135937 | 26136029 | 26135937 | ID=Msa0285970-mRNA-1:exon:9624;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26135752 | 26135836 | 26135752 | ID=Msa0285970-mRNA-1:exon:9623;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26135597 | 26135604 | 26135597 | ID=Msa0285970-mRNA-1:exon:9622;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26135192 | 26135358 | 26135192 | ID=Msa0285970-mRNA-1:exon:9621;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26135051 | 26135105 | 26135051 | ID=Msa0285970-mRNA-1:exon:9620;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26134888 | 26134936 | 26134888 | ID=Msa0285970-mRNA-1:exon:9619;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26134689 | 26134777 | 26134689 | ID=Msa0285970-mRNA-1:exon:9618;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26134110 | 26134187 | 26134110 | ID=Msa0285970-mRNA-1:exon:9617;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26133789 | 26133914 | 26133789 | ID=Msa0285970-mRNA-1:exon:9616;Parent=Msa0285970-mRNA-1 |
| chr2_3 | exon | 26133494 | 26133559 | 26133494 | ID=Msa0285970-mRNA-1:exon:9615;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26135937 | 26136029 | 26135937 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26135752 | 26135836 | 26135752 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26135597 | 26135604 | 26135597 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26135192 | 26135358 | 26135192 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26135051 | 26135105 | 26135051 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26134888 | 26134936 | 26134888 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26134689 | 26134777 | 26134689 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26134110 | 26134187 | 26134110 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26133789 | 26133914 | 26133789 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| chr2_3 | CDS | 26133494 | 26133559 | 26133494 | ID=Msa0285970-mRNA-1:cds;Parent=Msa0285970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
