Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285980 | AES65708.2 | 80.364 | 275 | 30 | 4 | 1 | 255 | 1 | 271 | 2.28e-148 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285980 | sp|Q99091|CPRF3_PETCR | 43.750 | 80 | 45 | 0 | 170 | 249 | 196 | 275 | 2.40e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285980 | G7ISU2 | 80.364 | 275 | 30 | 4 | 1 | 255 | 1 | 271 | 1.09e-148 | 425 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0285980 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285980 | MtrunA17_Chr1g0162721 | 61.165 | 309 | 64 | 8 | 1 | 255 | 1 | 307 | 7.57e-114 | 329 |
| Msa0285980 | MtrunA17_Chr2g0302481 | 60.849 | 212 | 58 | 1 | 44 | 255 | 2 | 188 | 5.84e-83 | 246 |
| Msa0285980 | MtrunA17_Chr2g0302501 | 60.550 | 109 | 37 | 2 | 1 | 103 | 20 | 128 | 1.81e-34 | 120 |
| Msa0285980 | MtrunA17_Chr4g0065261 | 60.674 | 89 | 34 | 1 | 167 | 255 | 88 | 175 | 1.33e-26 | 101 |
| Msa0285980 | MtrunA17_Chr8g0373571 | 47.500 | 80 | 42 | 0 | 170 | 249 | 260 | 339 | 9.73e-18 | 81.3 |
| Msa0285980 | MtrunA17_Chr5g0410531 | 38.542 | 96 | 57 | 2 | 148 | 242 | 286 | 380 | 1.35e-12 | 67.0 |
| Msa0285980 | MtrunA17_Chr8g0369161 | 39.241 | 79 | 47 | 1 | 160 | 237 | 296 | 374 | 1.56e-11 | 63.5 |
| Msa0285980 | MtrunA17_Chr8g0347741 | 42.647 | 68 | 39 | 0 | 170 | 237 | 280 | 347 | 9.42e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285980 | AT4G36730.1 | 46.250 | 80 | 43 | 0 | 170 | 249 | 222 | 301 | 4.96e-17 | 79.3 |
| Msa0285980 | AT4G36730.2 | 46.250 | 80 | 43 | 0 | 170 | 249 | 220 | 299 | 5.11e-17 | 79.3 |
| Msa0285980 | AT2G35530.1 | 42.857 | 77 | 43 | 1 | 162 | 237 | 296 | 372 | 1.18e-13 | 70.5 |
| Msa0285980 | AT1G32150.1 | 43.750 | 64 | 36 | 0 | 170 | 233 | 295 | 358 | 8.51e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGGGCTGGGTCAGAATT+TGG | 0.147766 | 2_3:-26147509 | Msa0285980:CDS |
| GCAAATAATTTGTTGAAATC+TGG | 0.194573 | 2_3:+26148269 | None:intergenic |
| TCTGGGCTGGGTCAGAATTT+GGG | 0.213477 | 2_3:-26147508 | Msa0285980:CDS |
| CTTCTGCATCAAAACATAAT+AGG | 0.230110 | 2_3:-26148184 | Msa0285980:CDS |
| CATTGAAGTAGTGCAATATT+TGG | 0.230581 | 2_3:+26148639 | None:intergenic |
| AAACGCTCGCTGAGCTTTCT+AGG | 0.255804 | 2_3:-26146775 | Msa0285980:CDS |
| CAGAGATCTAACATGATTAT+TGG | 0.278706 | 2_3:-26147647 | Msa0285980:CDS |
| GCTCAGCGAGCGTTTGTGTT+AGG | 0.282879 | 2_3:+26146783 | None:intergenic |
| CTCTGCTACATGAGGATTAT+AGG | 0.310651 | 2_3:+26148587 | None:intergenic |
| AAATAAGAAAAGAAAGAAAA+AGG | 0.331181 | 2_3:-26146998 | Msa0285980:CDS |
| TTCTTTGTAGAAAATCCATC+TGG | 0.342852 | 2_3:-26147526 | Msa0285980:intron |
| AATAGATCTGCAACCGATTC+TGG | 0.354294 | 2_3:+26146419 | None:intergenic |
| CAAATAATTTGTTGAAATCT+GGG | 0.364865 | 2_3:+26148270 | None:intergenic |
| AGGATTATAGGAGAGCTCTA+TGG | 0.365834 | 2_3:+26148599 | None:intergenic |
| TTCTGCATCAAAACATAATA+GGG | 0.394063 | 2_3:-26148183 | Msa0285980:CDS |
| TCTTGATGCTCAACTAAAAC+TGG | 0.396539 | 2_3:-26147452 | Msa0285980:intron |
| GATCTCTGCTTCATACTTGA+AGG | 0.401624 | 2_3:+26147662 | None:intergenic |
| GAATTTGGGGACAGTTGTTA+AGG | 0.407905 | 2_3:-26147494 | Msa0285980:CDS |
| TGGCAGACCTTACAATTTCT+CGG | 0.413188 | 2_3:-26148779 | Msa0285980:CDS |
| GTTTATCTGCGCAGGGCGGC+TGG | 0.415010 | 2_3:-26148078 | Msa0285980:intron |
| CCAGTAATTAAACTTAAAAC+AGG | 0.417895 | 2_3:+26148233 | None:intergenic |
| AAGATCAAAGATAAGGAAAC+AGG | 0.427615 | 2_3:-26146952 | Msa0285980:intron |
| AAGAAAGAATCCAATCCATT+TGG | 0.432707 | 2_3:-26148799 | Msa0285980:CDS |
| TCTGCGTACCATTTCTGAAA+AGG | 0.446864 | 2_3:+26148298 | None:intergenic |
| TGTAGAAAATCCATCTGGGC+TGG | 0.452613 | 2_3:-26147521 | Msa0285980:intron |
| GAAGAGCTAGTTAAAGACTA+TGG | 0.456107 | 2_3:-26146443 | Msa0285980:CDS |
| CTGGGCTGGGTCAGAATTTG+GGG | 0.465599 | 2_3:-26147507 | Msa0285980:CDS |
| GTAAGGTCTGCCAAATGGAT+TGG | 0.472361 | 2_3:+26148789 | None:intergenic |
| CAGCTAAAAGATCAAAGATA+AGG | 0.486050 | 2_3:-26146959 | Msa0285980:CDS |
| TAAAGACTATGGACCAGAAT+CGG | 0.509378 | 2_3:-26146432 | Msa0285980:CDS |
| TGAGCTTTCTAGGAAATGTC+TGG | 0.515005 | 2_3:-26146765 | Msa0285980:CDS |
| GTAGAAAATCCATCTGGGCT+GGG | 0.520703 | 2_3:-26147520 | Msa0285980:intron |
| AAATTGTAAGGTCTGCCAAA+TGG | 0.525325 | 2_3:+26148784 | None:intergenic |
| AAATTCTGACCCAGCCCAGA+TGG | 0.526322 | 2_3:+26147511 | None:intergenic |
| TATCTGCGCAGGGCGGCTGG+TGG | 0.532947 | 2_3:-26148075 | Msa0285980:intron |
| GGATTATAGGAGAGCTCTAT+GGG | 0.536305 | 2_3:+26148600 | None:intergenic |
| AGCGGCGCCGAGAAATTGTA+AGG | 0.545305 | 2_3:+26148772 | None:intergenic |
| GCATCAAAACATAATAGGGA+TGG | 0.558193 | 2_3:-26148179 | Msa0285980:CDS |
| TCTAACATGATTATTGGTGA+TGG | 0.571130 | 2_3:-26147641 | Msa0285980:intron |
| CAATGAAAACAATTCTATTG+TGG | 0.574707 | 2_3:-26146735 | Msa0285980:intron |
| TCTTTGTAGAAAATCCATCT+GGG | 0.584157 | 2_3:-26147525 | Msa0285980:intron |
| AGCGAGCGTTTGTGTTAGGA+CGG | 0.595395 | 2_3:+26146787 | None:intergenic |
| CTATAATCCTCATGTAGCAG+AGG | 0.606649 | 2_3:-26148586 | Msa0285980:intron |
| CGACCCACCTCTGCTACATG+AGG | 0.618025 | 2_3:+26148579 | None:intergenic |
| GGAAGTAAGAGATCAACAGA+TGG | 0.635178 | 2_3:-26148054 | Msa0285980:CDS |
| CATGATTTACTGACATCTAG+CGG | 0.690857 | 2_3:+26148754 | None:intergenic |
| ATAGGGATGGAACTTCAATG+AGG | 0.746306 | 2_3:-26148166 | Msa0285980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTTAGTATATATTTAG+TGG | - | chr2_3:26146717-26146736 | Msa0285980:intron | 15.0% |
| !!! | TGGATTTTCATATTTTTTTA+GGG | - | chr2_3:26146737-26146756 | Msa0285980:CDS | 15.0% |
| !!! | ATAAAAATGTTTATGCATTT+TGG | - | chr2_3:26146867-26146886 | Msa0285980:intron | 15.0% |
| !!! | TTAAAATTTTTCTTTAGTAC+AGG | - | chr2_3:26147477-26147496 | Msa0285980:CDS | 15.0% |
| !! | AAATAAGAAAAGAAAGAAAA+AGG | - | chr2_3:26148207-26148226 | Msa0285980:CDS | 15.0% |
| !! | TTTCACTATTAATTAAGAAA+AGG | - | chr2_3:26148583-26148602 | Msa0285980:intron | 15.0% |
| !! | ATAAATACTATAAAAGAAGA+TGG | + | chr2_3:26148609-26148628 | None:intergenic | 15.0% |
| !! | TATAGTTAGTATATATTTAG+TGG | - | chr2_3:26146717-26146736 | Msa0285980:intron | 15.0% |
| !!! | TGGATTTTCATATTTTTTTA+GGG | - | chr2_3:26146737-26146756 | Msa0285980:CDS | 15.0% |
| !!! | ATAAAAATGTTTATGCATTT+TGG | - | chr2_3:26146867-26146886 | Msa0285980:intron | 15.0% |
| !!! | TTAAAATTTTTCTTTAGTAC+AGG | - | chr2_3:26147477-26147496 | Msa0285980:CDS | 15.0% |
| !! | AAATAAGAAAAGAAAGAAAA+AGG | - | chr2_3:26148207-26148226 | Msa0285980:CDS | 15.0% |
| !! | TTTCACTATTAATTAAGAAA+AGG | - | chr2_3:26148583-26148602 | Msa0285980:intron | 15.0% |
| !! | ATAAATACTATAAAAGAAGA+TGG | + | chr2_3:26148609-26148628 | None:intergenic | 15.0% |
| !!! | GTGGATTTTCATATTTTTTT+AGG | - | chr2_3:26146736-26146755 | Msa0285980:CDS | 20.0% |
| !!! | GGATTTTCATATTTTTTTAG+GGG | - | chr2_3:26146738-26146757 | Msa0285980:CDS | 20.0% |
| !!! | CAAATAATTTGTTGAAATCT+GGG | + | chr2_3:26146938-26146957 | None:intergenic | 20.0% |
| !! | AATTATATTCTACTACGATA+TGG | + | chr2_3:26147998-26148017 | None:intergenic | 20.0% |
| !! | ATAATTGAACAAAGAAGAAA+CGG | + | chr2_3:26148511-26148530 | None:intergenic | 20.0% |
| !!! | GTGGATTTTCATATTTTTTT+AGG | - | chr2_3:26146736-26146755 | Msa0285980:CDS | 20.0% |
| !!! | GGATTTTCATATTTTTTTAG+GGG | - | chr2_3:26146738-26146757 | Msa0285980:CDS | 20.0% |
| !!! | CAAATAATTTGTTGAAATCT+GGG | + | chr2_3:26146938-26146957 | None:intergenic | 20.0% |
| !! | AATTATATTCTACTACGATA+TGG | + | chr2_3:26147998-26148017 | None:intergenic | 20.0% |
| !! | ATAATTGAACAAAGAAGAAA+CGG | + | chr2_3:26148511-26148530 | None:intergenic | 20.0% |
| ! | TAAAGAAAACTAGTTAAGAC+AGG | + | chr2_3:26146482-26146501 | None:intergenic | 25.0% |
| ! | CAATGAATATATCTACTGAA+AGG | + | chr2_3:26146655-26146674 | None:intergenic | 25.0% |
| !!! | TTTTCATATTTTTTTAGGGG+TGG | - | chr2_3:26146741-26146760 | Msa0285980:CDS | 25.0% |
| !!! | TTTCATATTTTTTTAGGGGT+GGG | - | chr2_3:26146742-26146761 | Msa0285980:CDS | 25.0% |
| !!! | GCAAATAATTTGTTGAAATC+TGG | + | chr2_3:26146939-26146958 | None:intergenic | 25.0% |
| ! | CCAGTAATTAAACTTAAAAC+AGG | + | chr2_3:26146975-26146994 | None:intergenic | 25.0% |
| !!! | CCTGTTTTAAGTTTAATTAC+TGG | - | chr2_3:26146972-26146991 | Msa0285980:CDS | 25.0% |
| ! | TTCTGCATCAAAACATAATA+GGG | - | chr2_3:26147022-26147041 | Msa0285980:intron | 25.0% |
| ! | AAATTAACGCAATAAAAGAC+TGG | + | chr2_3:26147858-26147877 | None:intergenic | 25.0% |
| !! | CACAATAGAATTGTTTTCAT+TGG | + | chr2_3:26148472-26148491 | None:intergenic | 25.0% |
| ! | CAATGAAAACAATTCTATTG+TGG | - | chr2_3:26148470-26148489 | Msa0285980:intron | 25.0% |
| ! | TAAAGAAAACTAGTTAAGAC+AGG | + | chr2_3:26146482-26146501 | None:intergenic | 25.0% |
| ! | CAATGAATATATCTACTGAA+AGG | + | chr2_3:26146655-26146674 | None:intergenic | 25.0% |
| !!! | TTTTCATATTTTTTTAGGGG+TGG | - | chr2_3:26146741-26146760 | Msa0285980:CDS | 25.0% |
| !!! | TTTCATATTTTTTTAGGGGT+GGG | - | chr2_3:26146742-26146761 | Msa0285980:CDS | 25.0% |
| !!! | GCAAATAATTTGTTGAAATC+TGG | + | chr2_3:26146939-26146958 | None:intergenic | 25.0% |
| ! | CCAGTAATTAAACTTAAAAC+AGG | + | chr2_3:26146975-26146994 | None:intergenic | 25.0% |
| !!! | CCTGTTTTAAGTTTAATTAC+TGG | - | chr2_3:26146972-26146991 | Msa0285980:CDS | 25.0% |
| ! | TTCTGCATCAAAACATAATA+GGG | - | chr2_3:26147022-26147041 | Msa0285980:intron | 25.0% |
| ! | AAATTAACGCAATAAAAGAC+TGG | + | chr2_3:26147858-26147877 | None:intergenic | 25.0% |
| !! | CACAATAGAATTGTTTTCAT+TGG | + | chr2_3:26148472-26148491 | None:intergenic | 25.0% |
| ! | CAATGAAAACAATTCTATTG+TGG | - | chr2_3:26148470-26148489 | Msa0285980:intron | 25.0% |
| AAGAAAGAATCCAATCCATT+TGG | - | chr2_3:26146406-26146425 | Msa0285980:CDS | 30.0% | |
| CATTGAAGTAGTGCAATATT+TGG | + | chr2_3:26146569-26146588 | None:intergenic | 30.0% | |
| !!! | TTCATATTTTTTTAGGGGTG+GGG | - | chr2_3:26146743-26146762 | Msa0285980:CDS | 30.0% |
| !! | AATGTTTATGCATTTTGGTC+AGG | - | chr2_3:26146872-26146891 | Msa0285980:intron | 30.0% |
| CTTCTGCATCAAAACATAAT+AGG | - | chr2_3:26147021-26147040 | Msa0285980:intron | 30.0% | |
| ! | ACACATTCAATTAGAAGTGT+CGG | - | chr2_3:26147371-26147390 | Msa0285980:intron | 30.0% |
| CAGAGATCTAACATGATTAT+TGG | - | chr2_3:26147558-26147577 | Msa0285980:intron | 30.0% | |
| TCTAACATGATTATTGGTGA+TGG | - | chr2_3:26147564-26147583 | Msa0285980:intron | 30.0% | |
| !! | TATTGGTGATGGTAAGATTA+TGG | - | chr2_3:26147575-26147594 | Msa0285980:intron | 30.0% |
| ! | GGATTTTCTACAAAGAAACA+AGG | + | chr2_3:26147676-26147695 | None:intergenic | 30.0% |
| TTCTTTGTAGAAAATCCATC+TGG | - | chr2_3:26147679-26147698 | Msa0285980:intron | 30.0% | |
| TCTTTGTAGAAAATCCATCT+GGG | - | chr2_3:26147680-26147699 | Msa0285980:intron | 30.0% | |
| AGTTTAGCTAATTCACAGAA+AGG | + | chr2_3:26147825-26147844 | None:intergenic | 30.0% | |
| CTAAGTATGTTCACATCATA+AGG | + | chr2_3:26147899-26147918 | None:intergenic | 30.0% | |
| CTCTCATACAAACATGTTAT+AGG | - | chr2_3:26147943-26147962 | Msa0285980:intron | 30.0% | |
| !!! | TAGGAAGTGTTTTTAAGTAG+TGG | - | chr2_3:26147962-26147981 | Msa0285980:intron | 30.0% |
| AAGCTTAGCAACATTAAGAA+GGG | + | chr2_3:26148119-26148138 | None:intergenic | 30.0% | |
| TAAGCTTAGCAACATTAAGA+AGG | + | chr2_3:26148120-26148139 | None:intergenic | 30.0% | |
| CAGCTAAAAGATCAAAGATA+AGG | - | chr2_3:26148246-26148265 | Msa0285980:CDS | 30.0% | |
| AAGATCAAAGATAAGGAAAC+AGG | - | chr2_3:26148253-26148272 | Msa0285980:CDS | 30.0% | |
| GTATTGAGATGTCTATGAAT+TGG | - | chr2_3:26148309-26148328 | Msa0285980:CDS | 30.0% | |
| ATCTAACAAAGAGAGATCAA+AGG | + | chr2_3:26148667-26148686 | None:intergenic | 30.0% | |
| AAGAAAGAATCCAATCCATT+TGG | - | chr2_3:26146406-26146425 | Msa0285980:CDS | 30.0% | |
| CATTGAAGTAGTGCAATATT+TGG | + | chr2_3:26146569-26146588 | None:intergenic | 30.0% | |
| !!! | TTCATATTTTTTTAGGGGTG+GGG | - | chr2_3:26146743-26146762 | Msa0285980:CDS | 30.0% |
| !! | AATGTTTATGCATTTTGGTC+AGG | - | chr2_3:26146872-26146891 | Msa0285980:intron | 30.0% |
| CTTCTGCATCAAAACATAAT+AGG | - | chr2_3:26147021-26147040 | Msa0285980:intron | 30.0% | |
| ! | ACACATTCAATTAGAAGTGT+CGG | - | chr2_3:26147371-26147390 | Msa0285980:intron | 30.0% |
| CAGAGATCTAACATGATTAT+TGG | - | chr2_3:26147558-26147577 | Msa0285980:intron | 30.0% | |
| TCTAACATGATTATTGGTGA+TGG | - | chr2_3:26147564-26147583 | Msa0285980:intron | 30.0% | |
| !! | TATTGGTGATGGTAAGATTA+TGG | - | chr2_3:26147575-26147594 | Msa0285980:intron | 30.0% |
| ! | GGATTTTCTACAAAGAAACA+AGG | + | chr2_3:26147676-26147695 | None:intergenic | 30.0% |
| TTCTTTGTAGAAAATCCATC+TGG | - | chr2_3:26147679-26147698 | Msa0285980:intron | 30.0% | |
| TCTTTGTAGAAAATCCATCT+GGG | - | chr2_3:26147680-26147699 | Msa0285980:intron | 30.0% | |
| AGTTTAGCTAATTCACAGAA+AGG | + | chr2_3:26147825-26147844 | None:intergenic | 30.0% | |
| CTAAGTATGTTCACATCATA+AGG | + | chr2_3:26147899-26147918 | None:intergenic | 30.0% | |
| CTCTCATACAAACATGTTAT+AGG | - | chr2_3:26147943-26147962 | Msa0285980:intron | 30.0% | |
| !!! | TAGGAAGTGTTTTTAAGTAG+TGG | - | chr2_3:26147962-26147981 | Msa0285980:intron | 30.0% |
| AAGCTTAGCAACATTAAGAA+GGG | + | chr2_3:26148119-26148138 | None:intergenic | 30.0% | |
| TAAGCTTAGCAACATTAAGA+AGG | + | chr2_3:26148120-26148139 | None:intergenic | 30.0% | |
| CAGCTAAAAGATCAAAGATA+AGG | - | chr2_3:26148246-26148265 | Msa0285980:CDS | 30.0% | |
| AAGATCAAAGATAAGGAAAC+AGG | - | chr2_3:26148253-26148272 | Msa0285980:CDS | 30.0% | |
| GTATTGAGATGTCTATGAAT+TGG | - | chr2_3:26148309-26148328 | Msa0285980:CDS | 30.0% | |
| ATCTAACAAAGAGAGATCAA+AGG | + | chr2_3:26148667-26148686 | None:intergenic | 30.0% | |
| AAATTGTAAGGTCTGCCAAA+TGG | + | chr2_3:26146424-26146443 | None:intergenic | 35.0% | |
| CATGATTTACTGACATCTAG+CGG | + | chr2_3:26146454-26146473 | None:intergenic | 35.0% | |
| !!! | TATGTTTTGATGCAGAAGAC+TGG | + | chr2_3:26147019-26147038 | None:intergenic | 35.0% |
| GCATCAAAACATAATAGGGA+TGG | - | chr2_3:26147026-26147045 | Msa0285980:intron | 35.0% | |
| ! | ACAGTTTGTTCTTGTTCTTC+TGG | - | chr2_3:26147063-26147082 | Msa0285980:intron | 35.0% |
| ! | AAACGATTTTGTTCACGCTT+TGG | + | chr2_3:26147111-26147130 | None:intergenic | 35.0% |
| CTACAGAGATTAGAACACTT+AGG | - | chr2_3:26147433-26147452 | Msa0285980:intron | 35.0% | |
| TCTTGATGCTCAACTAAAAC+TGG | - | chr2_3:26147753-26147772 | Msa0285980:intron | 35.0% | |
| !!! | TATTGTTTTTGACACGCTAG+CGG | - | chr2_3:26148032-26148051 | Msa0285980:CDS | 35.0% |
| AATGTCTAGCATTTCCTATC+TGG | - | chr2_3:26148156-26148175 | Msa0285980:intron | 35.0% | |
| CAAAAGAAATGCAACCAGAT+AGG | + | chr2_3:26148173-26148192 | None:intergenic | 35.0% | |
| AAAGAAAAAGGCTGTCAAAC+AGG | - | chr2_3:26148219-26148238 | Msa0285980:CDS | 35.0% | |
| TCTTCACATTCTTTCTGACA+AGG | + | chr2_3:26148360-26148379 | None:intergenic | 35.0% | |
| ACTCAAATTAGGAGCAATCT+TGG | + | chr2_3:26148722-26148741 | None:intergenic | 35.0% | |
| CTCCTAATTTGAGTGTGATT+TGG | - | chr2_3:26148728-26148747 | Msa0285980:intron | 35.0% | |
| CACCAAATCACACTCAAATT+AGG | + | chr2_3:26148733-26148752 | None:intergenic | 35.0% | |
| ! | CTAATTTGAGTGTGATTTGG+TGG | - | chr2_3:26148731-26148750 | Msa0285980:intron | 35.0% |
| GAAGAGCTAGTTAAAGACTA+TGG | - | chr2_3:26148762-26148781 | Msa0285980:intron | 35.0% | |
| TAAAGACTATGGACCAGAAT+CGG | - | chr2_3:26148773-26148792 | Msa0285980:CDS | 35.0% | |
| AAATTGTAAGGTCTGCCAAA+TGG | + | chr2_3:26146424-26146443 | None:intergenic | 35.0% | |
| CATGATTTACTGACATCTAG+CGG | + | chr2_3:26146454-26146473 | None:intergenic | 35.0% | |
| !!! | TATGTTTTGATGCAGAAGAC+TGG | + | chr2_3:26147019-26147038 | None:intergenic | 35.0% |
| GCATCAAAACATAATAGGGA+TGG | - | chr2_3:26147026-26147045 | Msa0285980:intron | 35.0% | |
| ! | ACAGTTTGTTCTTGTTCTTC+TGG | - | chr2_3:26147063-26147082 | Msa0285980:intron | 35.0% |
| ! | AAACGATTTTGTTCACGCTT+TGG | + | chr2_3:26147111-26147130 | None:intergenic | 35.0% |
| CTACAGAGATTAGAACACTT+AGG | - | chr2_3:26147433-26147452 | Msa0285980:intron | 35.0% | |
| TCTTGATGCTCAACTAAAAC+TGG | - | chr2_3:26147753-26147772 | Msa0285980:intron | 35.0% | |
| !!! | TATTGTTTTTGACACGCTAG+CGG | - | chr2_3:26148032-26148051 | Msa0285980:CDS | 35.0% |
| AATGTCTAGCATTTCCTATC+TGG | - | chr2_3:26148156-26148175 | Msa0285980:intron | 35.0% | |
| CAAAAGAAATGCAACCAGAT+AGG | + | chr2_3:26148173-26148192 | None:intergenic | 35.0% | |
| AAAGAAAAAGGCTGTCAAAC+AGG | - | chr2_3:26148219-26148238 | Msa0285980:CDS | 35.0% | |
| TCTTCACATTCTTTCTGACA+AGG | + | chr2_3:26148360-26148379 | None:intergenic | 35.0% | |
| ACTCAAATTAGGAGCAATCT+TGG | + | chr2_3:26148722-26148741 | None:intergenic | 35.0% | |
| CTCCTAATTTGAGTGTGATT+TGG | - | chr2_3:26148728-26148747 | Msa0285980:intron | 35.0% | |
| CACCAAATCACACTCAAATT+AGG | + | chr2_3:26148733-26148752 | None:intergenic | 35.0% | |
| ! | CTAATTTGAGTGTGATTTGG+TGG | - | chr2_3:26148731-26148750 | Msa0285980:intron | 35.0% |
| GAAGAGCTAGTTAAAGACTA+TGG | - | chr2_3:26148762-26148781 | Msa0285980:intron | 35.0% | |
| TAAAGACTATGGACCAGAAT+CGG | - | chr2_3:26148773-26148792 | Msa0285980:CDS | 35.0% | |
| TGGCAGACCTTACAATTTCT+CGG | - | chr2_3:26146426-26146445 | Msa0285980:CDS | 40.0% | |
| GGATTATAGGAGAGCTCTAT+GGG | + | chr2_3:26146608-26146627 | None:intergenic | 40.0% | |
| AGGATTATAGGAGAGCTCTA+TGG | + | chr2_3:26146609-26146628 | None:intergenic | 40.0% | |
| CTCTGCTACATGAGGATTAT+AGG | + | chr2_3:26146621-26146640 | None:intergenic | 40.0% | |
| CTATAATCCTCATGTAGCAG+AGG | - | chr2_3:26146619-26146638 | Msa0285980:intron | 40.0% | |
| !!! | TATTTTTTTAGGGGTGGGGT+TGG | - | chr2_3:26146747-26146766 | Msa0285980:CDS | 40.0% |
| !!! | ATTTTTTTAGGGGTGGGGTT+GGG | - | chr2_3:26146748-26146767 | Msa0285980:CDS | 40.0% |
| ! | TCTGCGTACCATTTCTGAAA+AGG | + | chr2_3:26146910-26146929 | None:intergenic | 40.0% |
| ! | TTTTGATGCAGAAGACTGGT+TGG | + | chr2_3:26147015-26147034 | None:intergenic | 40.0% |
| ATAGGGATGGAACTTCAATG+AGG | - | chr2_3:26147039-26147058 | Msa0285980:intron | 40.0% | |
| ACAAAATCGTTTATCTGCGC+AGG | - | chr2_3:26147119-26147138 | Msa0285980:intron | 40.0% | |
| CAAAATCGTTTATCTGCGCA+GGG | - | chr2_3:26147120-26147139 | Msa0285980:intron | 40.0% | |
| GGAAGTAAGAGATCAACAGA+TGG | - | chr2_3:26147151-26147170 | Msa0285980:intron | 40.0% | |
| ! | ACACCTTCGTTTAGAAGTGT+CGG | - | chr2_3:26147408-26147427 | Msa0285980:intron | 40.0% |
| GTCTAATCACATCCTTTCCT+TGG | - | chr2_3:26147511-26147530 | Msa0285980:CDS | 40.0% | |
| GATCTCTGCTTCATACTTGA+AGG | + | chr2_3:26147546-26147565 | None:intergenic | 40.0% | |
| GAATTTGGGGACAGTTGTTA+AGG | - | chr2_3:26147711-26147730 | Msa0285980:intron | 40.0% | |
| GAAAATCTGCTCACAACAAC+AGG | - | chr2_3:26147918-26147937 | Msa0285980:intron | 40.0% | |
| TACAGTAGCAATGATGCCTA+CGG | - | chr2_3:26148064-26148083 | Msa0285980:CDS | 40.0% | |
| ! | CTGGTTGCATTTCTTTTGAC+AGG | - | chr2_3:26148175-26148194 | Msa0285980:CDS | 40.0% |
| CTGTTGAATTGCACCAATCA+TGG | + | chr2_3:26148290-26148309 | None:intergenic | 40.0% | |
| ! | TGAGCTTTCTAGGAAATGTC+TGG | - | chr2_3:26148440-26148459 | Msa0285980:intron | 40.0% |
| !! | ATTTGAGTGTGATTTGGTGG+TGG | - | chr2_3:26148734-26148753 | Msa0285980:intron | 40.0% |
| ! | AATAGATCTGCAACCGATTC+TGG | + | chr2_3:26148789-26148808 | None:intergenic | 40.0% |
| TGGCAGACCTTACAATTTCT+CGG | - | chr2_3:26146426-26146445 | Msa0285980:CDS | 40.0% | |
| GGATTATAGGAGAGCTCTAT+GGG | + | chr2_3:26146608-26146627 | None:intergenic | 40.0% | |
| AGGATTATAGGAGAGCTCTA+TGG | + | chr2_3:26146609-26146628 | None:intergenic | 40.0% | |
| CTCTGCTACATGAGGATTAT+AGG | + | chr2_3:26146621-26146640 | None:intergenic | 40.0% | |
| CTATAATCCTCATGTAGCAG+AGG | - | chr2_3:26146619-26146638 | Msa0285980:intron | 40.0% | |
| !!! | TATTTTTTTAGGGGTGGGGT+TGG | - | chr2_3:26146747-26146766 | Msa0285980:CDS | 40.0% |
| !!! | ATTTTTTTAGGGGTGGGGTT+GGG | - | chr2_3:26146748-26146767 | Msa0285980:CDS | 40.0% |
| ! | TCTGCGTACCATTTCTGAAA+AGG | + | chr2_3:26146910-26146929 | None:intergenic | 40.0% |
| ! | TTTTGATGCAGAAGACTGGT+TGG | + | chr2_3:26147015-26147034 | None:intergenic | 40.0% |
| ATAGGGATGGAACTTCAATG+AGG | - | chr2_3:26147039-26147058 | Msa0285980:intron | 40.0% | |
| ACAAAATCGTTTATCTGCGC+AGG | - | chr2_3:26147119-26147138 | Msa0285980:intron | 40.0% | |
| CAAAATCGTTTATCTGCGCA+GGG | - | chr2_3:26147120-26147139 | Msa0285980:intron | 40.0% | |
| GGAAGTAAGAGATCAACAGA+TGG | - | chr2_3:26147151-26147170 | Msa0285980:intron | 40.0% | |
| ! | ACACCTTCGTTTAGAAGTGT+CGG | - | chr2_3:26147408-26147427 | Msa0285980:intron | 40.0% |
| GTCTAATCACATCCTTTCCT+TGG | - | chr2_3:26147511-26147530 | Msa0285980:CDS | 40.0% | |
| GATCTCTGCTTCATACTTGA+AGG | + | chr2_3:26147546-26147565 | None:intergenic | 40.0% | |
| GAATTTGGGGACAGTTGTTA+AGG | - | chr2_3:26147711-26147730 | Msa0285980:intron | 40.0% | |
| GAAAATCTGCTCACAACAAC+AGG | - | chr2_3:26147918-26147937 | Msa0285980:intron | 40.0% | |
| TACAGTAGCAATGATGCCTA+CGG | - | chr2_3:26148064-26148083 | Msa0285980:CDS | 40.0% | |
| ! | CTGGTTGCATTTCTTTTGAC+AGG | - | chr2_3:26148175-26148194 | Msa0285980:CDS | 40.0% |
| CTGTTGAATTGCACCAATCA+TGG | + | chr2_3:26148290-26148309 | None:intergenic | 40.0% | |
| ! | TGAGCTTTCTAGGAAATGTC+TGG | - | chr2_3:26148440-26148459 | Msa0285980:intron | 40.0% |
| !! | ATTTGAGTGTGATTTGGTGG+TGG | - | chr2_3:26148734-26148753 | Msa0285980:intron | 40.0% |
| ! | AATAGATCTGCAACCGATTC+TGG | + | chr2_3:26148789-26148808 | None:intergenic | 40.0% |
| GTAAGGTCTGCCAAATGGAT+TGG | + | chr2_3:26146419-26146438 | None:intergenic | 45.0% | |
| TAATCCTCATGTAGCAGAGG+TGG | - | chr2_3:26146622-26146641 | Msa0285980:intron | 45.0% | |
| AATCCTCATGTAGCAGAGGT+GGG | - | chr2_3:26146623-26146642 | Msa0285980:intron | 45.0% | |
| !!! | TTTTTTTAGGGGTGGGGTTG+GGG | - | chr2_3:26146749-26146768 | Msa0285980:CDS | 45.0% |
| !!! | TGCACTGGCCTTTTCAGAAA+TGG | - | chr2_3:26146899-26146918 | Msa0285980:intron | 45.0% |
| !! | AACCTATGAAGCATCGACAC+TGG | - | chr2_3:26147262-26147281 | Msa0285980:intron | 45.0% |
| TCATGTGTTGCGTCAGTATC+AGG | - | chr2_3:26147345-26147364 | Msa0285980:intron | 45.0% | |
| AATCACATCCTTTCCTTGGC+AGG | - | chr2_3:26147515-26147534 | Msa0285980:CDS | 45.0% | |
| CACAAGAACTGCAGTTCATG+TGG | - | chr2_3:26147636-26147655 | Msa0285980:intron | 45.0% | |
| TGTAGAAAATCCATCTGGGC+TGG | - | chr2_3:26147684-26147703 | Msa0285980:intron | 45.0% | |
| GTAGAAAATCCATCTGGGCT+GGG | - | chr2_3:26147685-26147704 | Msa0285980:intron | 45.0% | |
| ACAGTAGCAATGATGCCTAC+GGG | - | chr2_3:26148065-26148084 | Msa0285980:CDS | 45.0% | |
| AATGATGCCTACGGGAAGAT+TGG | - | chr2_3:26148073-26148092 | Msa0285980:intron | 45.0% | |
| GGTACGTACTAGACCATGAT+TGG | - | chr2_3:26148274-26148293 | Msa0285980:CDS | 45.0% | |
| GTAAGGTCTGCCAAATGGAT+TGG | + | chr2_3:26146419-26146438 | None:intergenic | 45.0% | |
| TAATCCTCATGTAGCAGAGG+TGG | - | chr2_3:26146622-26146641 | Msa0285980:intron | 45.0% | |
| AATCCTCATGTAGCAGAGGT+GGG | - | chr2_3:26146623-26146642 | Msa0285980:intron | 45.0% | |
| !!! | TTTTTTTAGGGGTGGGGTTG+GGG | - | chr2_3:26146749-26146768 | Msa0285980:CDS | 45.0% |
| !!! | TGCACTGGCCTTTTCAGAAA+TGG | - | chr2_3:26146899-26146918 | Msa0285980:intron | 45.0% |
| !! | AACCTATGAAGCATCGACAC+TGG | - | chr2_3:26147262-26147281 | Msa0285980:intron | 45.0% |
| TCATGTGTTGCGTCAGTATC+AGG | - | chr2_3:26147345-26147364 | Msa0285980:intron | 45.0% | |
| AATCACATCCTTTCCTTGGC+AGG | - | chr2_3:26147515-26147534 | Msa0285980:CDS | 45.0% | |
| CACAAGAACTGCAGTTCATG+TGG | - | chr2_3:26147636-26147655 | Msa0285980:intron | 45.0% | |
| TGTAGAAAATCCATCTGGGC+TGG | - | chr2_3:26147684-26147703 | Msa0285980:intron | 45.0% | |
| GTAGAAAATCCATCTGGGCT+GGG | - | chr2_3:26147685-26147704 | Msa0285980:intron | 45.0% | |
| ACAGTAGCAATGATGCCTAC+GGG | - | chr2_3:26148065-26148084 | Msa0285980:CDS | 45.0% | |
| AATGATGCCTACGGGAAGAT+TGG | - | chr2_3:26148073-26148092 | Msa0285980:intron | 45.0% | |
| GGTACGTACTAGACCATGAT+TGG | - | chr2_3:26148274-26148293 | Msa0285980:CDS | 45.0% | |
| !!! | TTTTTTAGGGGTGGGGTTGG+GGG | - | chr2_3:26146750-26146769 | Msa0285980:CDS | 50.0% |
| ! | TTTTGGTCAGGATGCTGCAC+TGG | - | chr2_3:26146884-26146903 | Msa0285980:intron | 50.0% |
| AATCGTTTATCTGCGCAGGG+CGG | - | chr2_3:26147123-26147142 | Msa0285980:intron | 50.0% | |
| !! | GTCCAGTGTCGATGCTTCAT+AGG | + | chr2_3:26147267-26147286 | None:intergenic | 50.0% |
| ! | GCACCGACACTTCTAAACGA+AGG | + | chr2_3:26147414-26147433 | None:intergenic | 50.0% |
| AGGATAGTCCTGCCAAGGAA+AGG | + | chr2_3:26147526-26147545 | None:intergenic | 50.0% | |
| CTTGAAGGATAGTCCTGCCA+AGG | + | chr2_3:26147531-26147550 | None:intergenic | 50.0% | |
| AAATTCTGACCCAGCCCAGA+TGG | + | chr2_3:26147697-26147716 | None:intergenic | 50.0% | |
| ! | ATCTGGGCTGGGTCAGAATT+TGG | - | chr2_3:26147696-26147715 | Msa0285980:intron | 50.0% |
| ! | TCTGGGCTGGGTCAGAATTT+GGG | - | chr2_3:26147697-26147716 | Msa0285980:intron | 50.0% |
| TGACACGCTAGCGGTTATAG+CGG | - | chr2_3:26148041-26148060 | Msa0285980:CDS | 50.0% | |
| TCCATCTCCAATCTTCCCGT+AGG | + | chr2_3:26148083-26148102 | None:intergenic | 50.0% | |
| AGCGAGCGTTTGTGTTAGGA+CGG | + | chr2_3:26148421-26148440 | None:intergenic | 50.0% | |
| AAACGCTCGCTGAGCTTTCT+AGG | - | chr2_3:26148430-26148449 | Msa0285980:intron | 50.0% | |
| !! | GTGTGATTTGGTGGTGGAAC+AGG | - | chr2_3:26148740-26148759 | Msa0285980:intron | 50.0% |
| !!! | TTTTTTAGGGGTGGGGTTGG+GGG | - | chr2_3:26146750-26146769 | Msa0285980:CDS | 50.0% |
| ! | TTTTGGTCAGGATGCTGCAC+TGG | - | chr2_3:26146884-26146903 | Msa0285980:intron | 50.0% |
| AATCGTTTATCTGCGCAGGG+CGG | - | chr2_3:26147123-26147142 | Msa0285980:intron | 50.0% | |
| !! | GTCCAGTGTCGATGCTTCAT+AGG | + | chr2_3:26147267-26147286 | None:intergenic | 50.0% |
| ! | GCACCGACACTTCTAAACGA+AGG | + | chr2_3:26147414-26147433 | None:intergenic | 50.0% |
| AGGATAGTCCTGCCAAGGAA+AGG | + | chr2_3:26147526-26147545 | None:intergenic | 50.0% | |
| CTTGAAGGATAGTCCTGCCA+AGG | + | chr2_3:26147531-26147550 | None:intergenic | 50.0% | |
| AAATTCTGACCCAGCCCAGA+TGG | + | chr2_3:26147697-26147716 | None:intergenic | 50.0% | |
| ! | ATCTGGGCTGGGTCAGAATT+TGG | - | chr2_3:26147696-26147715 | Msa0285980:intron | 50.0% |
| ! | TCTGGGCTGGGTCAGAATTT+GGG | - | chr2_3:26147697-26147716 | Msa0285980:intron | 50.0% |
| TGACACGCTAGCGGTTATAG+CGG | - | chr2_3:26148041-26148060 | Msa0285980:CDS | 50.0% | |
| TCCATCTCCAATCTTCCCGT+AGG | + | chr2_3:26148083-26148102 | None:intergenic | 50.0% | |
| AGCGAGCGTTTGTGTTAGGA+CGG | + | chr2_3:26148421-26148440 | None:intergenic | 50.0% | |
| AAACGCTCGCTGAGCTTTCT+AGG | - | chr2_3:26148430-26148449 | Msa0285980:intron | 50.0% | |
| !! | GTGTGATTTGGTGGTGGAAC+AGG | - | chr2_3:26148740-26148759 | Msa0285980:intron | 50.0% |
| ! | AGCGGCGCCGAGAAATTGTA+AGG | + | chr2_3:26146436-26146455 | None:intergenic | 55.0% |
| ! | CTGGGCTGGGTCAGAATTTG+GGG | - | chr2_3:26147698-26147717 | Msa0285980:intron | 55.0% |
| GCCTACGGGAAGATTGGAGA+TGG | - | chr2_3:26148079-26148098 | Msa0285980:intron | 55.0% | |
| GCTCAGCGAGCGTTTGTGTT+AGG | + | chr2_3:26148425-26148444 | None:intergenic | 55.0% | |
| ! | AGCGGCGCCGAGAAATTGTA+AGG | + | chr2_3:26146436-26146455 | None:intergenic | 55.0% |
| ! | CTGGGCTGGGTCAGAATTTG+GGG | - | chr2_3:26147698-26147717 | Msa0285980:intron | 55.0% |
| GCCTACGGGAAGATTGGAGA+TGG | - | chr2_3:26148079-26148098 | Msa0285980:intron | 55.0% | |
| GCTCAGCGAGCGTTTGTGTT+AGG | + | chr2_3:26148425-26148444 | None:intergenic | 55.0% | |
| CGACCCACCTCTGCTACATG+AGG | + | chr2_3:26146629-26146648 | None:intergenic | 60.0% | |
| CGACCCACCTCTGCTACATG+AGG | + | chr2_3:26146629-26146648 | None:intergenic | 60.0% | |
| GTTTATCTGCGCAGGGCGGC+TGG | - | chr2_3:26147127-26147146 | Msa0285980:intron | 65.0% | |
| GTTTATCTGCGCAGGGCGGC+TGG | - | chr2_3:26147127-26147146 | Msa0285980:intron | 65.0% | |
| TATCTGCGCAGGGCGGCTGG+TGG | - | chr2_3:26147130-26147149 | Msa0285980:intron | 70.0% | |
| TATCTGCGCAGGGCGGCTGG+TGG | - | chr2_3:26147130-26147149 | Msa0285980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 26146400 | 26148827 | 26146400 | ID=Msa0285980;Name=Msa0285980 |
| chr2_3 | mRNA | 26146400 | 26148827 | 26146400 | ID=Msa0285980-mRNA-1;Parent=Msa0285980;Name=Msa0285980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|9|0|255 |
| chr2_3 | exon | 26148768 | 26148827 | 26148768 | ID=Msa0285980-mRNA-1:exon:9614;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26148587 | 26148667 | 26148587 | ID=Msa0285980-mRNA-1:exon:9613;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26148167 | 26148333 | 26148167 | ID=Msa0285980-mRNA-1:exon:9612;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26148032 | 26148086 | 26148032 | ID=Msa0285980-mRNA-1:exon:9611;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26147642 | 26147690 | 26147642 | ID=Msa0285980-mRNA-1:exon:9610;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26147453 | 26147538 | 26147453 | ID=Msa0285980-mRNA-1:exon:9609;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26146953 | 26147030 | 26146953 | ID=Msa0285980-mRNA-1:exon:9608;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26146736 | 26146861 | 26146736 | ID=Msa0285980-mRNA-1:exon:9607;Parent=Msa0285980-mRNA-1 |
| chr2_3 | exon | 26146400 | 26146465 | 26146400 | ID=Msa0285980-mRNA-1:exon:9606;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26148768 | 26148827 | 26148768 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26148587 | 26148667 | 26148587 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26148167 | 26148333 | 26148167 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26148032 | 26148086 | 26148032 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26147642 | 26147690 | 26147642 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26147453 | 26147538 | 26147453 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26146953 | 26147030 | 26146953 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26146736 | 26146861 | 26146736 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| chr2_3 | CDS | 26146400 | 26146465 | 26146400 | ID=Msa0285980-mRNA-1:cds;Parent=Msa0285980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
