AlfalfaGEDB | Msa0286240

M. sativa cultivar zhongmu-4 / Msa0286240

KEGG: K11446
GO: GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286240	XP_013463743.1	94.716	1003	35	1	1	985	1	1003	0.0	1957

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286240	sp\|F4I6G4\|JMJ18_ARATH	64.202	595	196	6	4	589	6	592	0.0	746
Msa0286240	sp\|F4I6G4\|JMJ18_ARATH	53.631	179	73	4	748	924	648	818	7.73e-50	193

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286240	A0A072V8U6	94.716	1003	35	1	1	985	1	1003	0.0	1957

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TFs/TRs:

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Gene ID	Type	Classification
Msa0286240	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286240	MtrunA17_Chr2g0303101	94.716	1003	35	1	1	985	1	1003	0.0	1957
Msa0286240	MtrunA17_Chr8g0380981	58.902	1056	344	14	14	983	2	1053	0.0	1161
Msa0286240	MtrunA17_Chr1g0189211	58.247	582	232	6	27	604	125	699	0.0	687
Msa0286240	MtrunA17_Chr1g0189211	37.603	242	139	3	744	984	998	1228	1.02e-39	160
Msa0286240	MtrunA17_Chr7g0261401	45.391	575	290	8	34	590	99	667	1.13e-159	491
Msa0286240	MtrunA17_Chr5g0397501	40.515	427	206	8	154	568	288	678	1.14e-86	304
Msa0286240	MtrunA17_Chr5g0397501	54.054	74	30	2	47	120	23	92	4.39e-14	77.0
Msa0286240	MtrunA17_Chr5g0410721	35.714	406	176	11	49	440	86	420	3.56e-59	218
Msa0286240	MtrunA17_Chr3g0116441	33.827	405	195	10	52	445	18	360	4.08e-55	209
Msa0286240	MtrunA17_Chr1g0164731	29.353	603	321	17	48	631	41	557	1.88e-54	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286240	AT1G30810.3	64.202	595	196	6	4	589	6	592	0.0	746
Msa0286240	AT1G30810.3	53.631	179	73	4	748	924	648	818	7.86e-51	193
Msa0286240	AT1G30810.2	64.202	595	196	6	4	589	6	592	0.0	746
Msa0286240	AT1G30810.2	53.631	179	73	4	748	924	648	818	7.86e-51	193
Msa0286240	AT1G30810.1	64.202	595	196	6	4	589	6	592	0.0	746
Msa0286240	AT1G30810.1	53.631	179	73	4	748	924	648	818	7.86e-51	193
Msa0286240	AT4G20400.1	60.274	584	219	4	8	585	12	588	0.0	718
Msa0286240	AT4G20400.1	40.708	226	113	3	761	982	743	951	2.70e-44	174
Msa0286240	AT2G34880.1	57.313	588	224	9	7	585	14	583	0.0	691
Msa0286240	AT2G34880.1	49.438	178	83	2	720	894	602	775	9.16e-46	177

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Find 220 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAAGGGAGCCCTCGG+AGG	0.616853	2_3:-27139570	Msa0286240:CDS
AAACCTCAGCAGATAAGTGT+TGG	0.523110	2_3:-27136751	Msa0286240:CDS
AAACTGGTTGTGCGGGAACC+AGG	0.420135	2_3:-27137738	Msa0286240:CDS
AAAGCAGAAGCATGGCTTCC+AGG	0.340144	2_3:+27138837	None:intergenic
AAAGGTTTCCCTACATCTCC+AGG	0.510314	2_3:-27136282	Msa0286240:CDS
AAAGTCTTTAAACGTGAAGT+CGG	0.621637	2_3:+27139679	None:intergenic
AAATATCTTTCTCCTTAAGA+AGG	0.467623	2_3:+27139903	None:intergenic
AAATGCAGGGAAACTACACA+CGG	0.725422	2_3:-27135674	Msa0286240:three_prime_UTR
AAATTGAAGGTGAATATTGG+CGG	0.578021	2_3:-27139544	Msa0286240:CDS
AAATTGCTTGAAGCACTAGA+AGG	0.484561	2_3:-27137874	Msa0286240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGAAAATCTAACCTCTT+TGG	+	chr2_3:27135687-27135706	None:intergenic	30.0%
GAGAAATCATATGCATTGTT+AGG	+	chr2_3:27135710-27135729	None:intergenic	30.0%
TAACATTGTATCTCTGTTTC+TGG	-	chr2_3:27135871-27135890	Msa0286240:three_prime_UTR	30.0%
GAAAGATAAAAACTCATAGC+TGG	+	chr2_3:27135945-27135964	None:intergenic	30.0%
GTCATCTACATATGTGATAT+TGG	-	chr2_3:27136051-27136070	Msa0286240:CDS	30.0%
TTCCTATTTGTTCCAAAGAA+CGG	+	chr2_3:27136374-27136393	None:intergenic	30.0%
TCAATAGTTGGATGAAAAAC+AGG	+	chr2_3:27136604-27136623	None:intergenic	30.0%
CCTATGAAGAAAAAAAGTAG+GGG	-	chr2_3:27136910-27136929	Msa0286240:intron	30.0%
AAAGTCTTTAAACGTGAAGT+CGG	+	chr2_3:27137055-27137074	None:intergenic	30.0%
TTGAAAGATGCAAATGAAGA+TGG	-	chr2_3:27137114-27137133	Msa0286240:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	27135657	27141096	27135657	ID=Msa0286240;Name=Msa0286240
chr2_3	mRNA	27135657	27141096	27135657	ID=Msa0286240-mRNA-1;Parent=Msa0286240;Name=Msa0286240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=5\|1\|0.90\|1\|1\|1\|11\|369\|985
chr2_3	exon	27135657	27136355	27135657	ID=Msa0286240-mRNA-1:exon:9780;Parent=Msa0286240-mRNA-1
chr2_3	exon	27136613	27136810	27136613	ID=Msa0286240-mRNA-1:exon:9779;Parent=Msa0286240-mRNA-1
chr2_3	exon	27137069	27137172	27137069	ID=Msa0286240-mRNA-1:exon:9778;Parent=Msa0286240-mRNA-1
chr2_3	exon	27137269	27138148	27137269	ID=Msa0286240-mRNA-1:exon:9777;Parent=Msa0286240-mRNA-1
chr2_3	exon	27138275	27138643	27138275	ID=Msa0286240-mRNA-1:exon:9776;Parent=Msa0286240-mRNA-1
chr2_3	exon	27138770	27138931	27138770	ID=Msa0286240-mRNA-1:exon:9775;Parent=Msa0286240-mRNA-1
chr2_3	exon	27139201	27139422	27139201	ID=Msa0286240-mRNA-1:exon:9774;Parent=Msa0286240-mRNA-1
chr2_3	exon	27139514	27140026	27139514	ID=Msa0286240-mRNA-1:exon:9773;Parent=Msa0286240-mRNA-1
chr2_3	exon	27140129	27140206	27140129	ID=Msa0286240-mRNA-1:exon:9772;Parent=Msa0286240-mRNA-1
chr2_3	exon	27140441	27140512	27140441	ID=Msa0286240-mRNA-1:exon:9771;Parent=Msa0286240-mRNA-1
chr2_3	exon	27141062	27141096	27141062	ID=Msa0286240-mRNA-1:exon:9770;Parent=Msa0286240-mRNA-1
chr2_3	five_prime_UTR	27141092	27141096	27141092	ID=Msa0286240-mRNA-1:five_prime_utr;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27141062	27141091	27141062	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27140441	27140512	27140441	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27140129	27140206	27140129	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27139514	27140026	27139514	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27139201	27139422	27139201	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27138770	27138931	27138770	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27138275	27138643	27138275	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27137269	27138148	27137269	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27137069	27137172	27137069	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27136613	27136810	27136613	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	CDS	27136026	27136355	27136026	ID=Msa0286240-mRNA-1:cds;Parent=Msa0286240-mRNA-1
chr2_3	three_prime_UTR	27135657	27136025	27135657	ID=Msa0286240-mRNA-1:three_prime_utr;Parent=Msa0286240-mRNA-1

Gene Sequence

>Msa0286240

ATGAAACAAATGGAATTGGATGCCAAAGAGGATAGTCCTCTTCGGCACAAGCCTAAAAAGGACAATGCACTTGAGTCTCCTGAAAGTCTTAGAAGTAAAAAGATATCAGCTAGATGGGATCCATCTGAAGCATGTCGGCCTATAATTGATGAAGCACCTGTTTTTCATCCAACTATTGAAGAGTTTGAAGATACATTGAGTTACATAGCGAAGATACGCCCCCTAGCCGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATTTGGGAAAATGCCGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAGGAACTCCAAATCAGGAACATGTAGGAGAGCTTCCAAATCAGCTTCTGAAGCTAATAATGCATCTGAAGCTGATGAGAAATACGGATTTCAAGCAGGGTCCGACTTCACGTTTAAAGACTTTCAGCAATATGCTAGCCACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCAAATGAAGATGGAAAAGTTAACGATAGTAACCACCAAAACCGAAGGGAGCCCTCGGAGGAGGAAATTGAAGGTGAATATTGGCGGATAGTTGAGCAGCCAACAGATGAAGTTGAGGTGTACTATGGAGCGGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTTCTAAGGCATCATCCATACCTAAGGGTTATCCGGATCAGTATGCACTTTCTGGTTGGAATCTAAATAACTTCCCGCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCGTTTTGTTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACTCAAAGATATGGTATGGAGTACCTGGAAGCCATGCTTCTGCTTTAGAAAATGCAATGAAGAAGCACTTGCCTGATTTGTTTGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCATCAATTCTTAAAGATGAGGGAGTGCCCGTATATCGAACTGTTCAGCACTCTGGGGAATTTGTCATTACTTTTCCGAGGGGGTACCATTCTGGGTTCAATTGTGGGTTCAACTGTGCAGAAGCAGTGAATGTAGCTCCTGTCGATTGGTTAACGCATGGCCTAAATGCCGTTGAACTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCATCGCTGGAAGCTATACGAGCCCTTGCAGAGCTAACTCTTCATGGAAAGGAAAGTTCAAAAAATTTGAAATGGAGAAGCTACTGTGGGAAAGATGGAGTTCTTACCAAGGCATTTAAGGCAAGGATAAAGATGGAAGAAGAGAGGCTAAACTGTCTTCCAACTCATTTTAAGTCGCTGAAGATGGGCAACGACTTTGACTTGCATACAGAACGAGAATGCTTTTCTTGCTTCTATGACTTATATCTATCTACTGTCGGTTGCGAGTGCTCTCCTGATAAATATTCTTGTCTTAAGCATGCTAGTTTGTTCTGCTCATGCGAAATGGACAAAAGATTTGTTCTGCTTCGATATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCACTTGCTCTTGAGTTATGGGAAAGTAAAAACTTCGGACTGGTTTCTGCCATGGCCAATGAGGTTTGCATGAACAAACAAGAGGTGGATGGAGACAAGGGTCATGAAGAAACTGGTTGTGCGGGAACCAGGGATAGGTCAAATAGTCATGCTACATCAGAGCTAATGCAGTGTGAATCTCACCTTGTAACCCTTAGTGCGCCAAATGAAAGTTTAGATAGTGATAACAAGGGTGATTCAGTAGAGGAAAAAGCATGTTGTTCAGAGATAAAAAAGGAACAAGACAACATGGAACTTGTTGTTGACCTATCACCTTCATCTTCTGTTGTGAAGACAGAAGTTTCATCATGCTCTAGGAATGTTCACAATTCTTGTACATTTGATGGTGGAAAACTTGAGGTGCATCTGCAAATGGATTCAGATTCAAGAAAGAAACCGAAAATTGTAGTTGAAAAAGTTATTGACACCACGAGCGCGAGTATATCTTTGACACAAGAAAGCTTTCTAATGCAAATTTTGAGTACTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTCATGGGAAGCTATGGTGCAATAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGAGTTAATTTCTTTAGCATCATCGATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTAATTGATGCTGGACTTCTAGGACCTCTTTTCAAGGTTACAATGGAGGAATGTCCAAGTGTCACTTTCACGGAAACCTCAGCAGATAAGTGTTGGGAATCAGTTCTCAAGAGACTACGTGACAAAATCACAGAGCAAAGGAGTCTAGGTGAACATGAACTTCCTTCCTTAGAGCTTCTGAAAAGCATTAACGGTTTTAGAATGTTCGGCTTCCCTTTACCGTCCATTGTTCAGGCCATCGAAGCTCAAGATCCCAGTCATCAGTGTGCAGAGTATTGGAATCACAAAGGTTTCCCTACATCTCCAGGAAGTGTCATCGATAACTGTAAAGTCCTATGTTGTTCAAGTAGCCCTACCAAAGTTTTTGGTATTAATTTTACTGATCAGGCTATAGGCAACATAGGAGGAAGTTATTATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCCCGAAGAGCTAAGCTCATTGCGCAAGTTTCTCATCTCTGACGCACAATGTTCTGAGTGGAGAATGACATTAACATCATTGATCGATGAGATTCAGAAAGCTTTGTAG

Protein sequence

>Msa0286240

MKQMELDAKEDSPLRHKPKKDNALESPESLRSKKISARWDPSEACRPIIDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRRNSKSGTCRRASKSASEANNASEADEKYGFQAGSDFTFKDFQQYASHFKECYFGLKDANEDGKVNDSNHQNRREPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFSKASSIPKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDSKIWYGVPGSHASALENAMKKHLPDLFEEVPNLLNDLVTQLSPSILKDEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLTHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKESSKNLKWRSYCGKDGVLTKAFKARIKMEEERLNCLPTHFKSLKMGNDFDLHTERECFSCFYDLYLSTVGCECSPDKYSCLKHASLFCSCEMDKRFVLLRYNMNELNKLLEALEGDSLALELWESKNFGLVSAMANEVCMNKQEVDGDKGHEETGCAGTRDRSNSHATSELMQCESHLVTLSAPNESLDSDNKGDSVEEKACCSEIKKEQDNMELVVDLSPSSSVVKTEVSSCSRNVHNSCTFDGGKLEVHLQMDSDSRKKPKIVVEKVIDTTSASISLTQESFLMQILSTSVKPISLGSVVHGKLWCNKHAIYPKGFKSRVNFFSIIDPTRICSYVSEVIDAGLLGPLFKVTMEECPSVTFTETSADKCWESVLKRLRDKITEQRSLGEHELPSLELLKSINGFRMFGFPLPSIVQAIEAQDPSHQCAEYWNHKGFPTSPGSVIDNCKVLCCSSSPTKVFGINFTDQAIGNIGGSYYSLEEMKSILQKASPEELSSLRKFLISDAQCSEWRMTLTSLIDEIQKAL*