AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0286370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0286370 MtrunA17_Chr2g0303181 71.970 132 15 3 1 128 1 114 1.44e-57 176
Msa0286370 MtrunA17_Chr8g0381011 61.765 136 33 2 1 135 1 118 1.43e-50 159
Msa0286370 MtrunA17_Chr4g0054701 49.194 124 45 1 2 125 31 136 3.65e-37 124
Msa0286370 MtrunA17_Chr4g0054701 45.679 81 43 1 60 139 32 112 3.38e-15 68.2
Msa0286370 MtrunA17_Chr4g0047341 46.269 67 36 0 59 125 40 106 8.44e-17 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0286370 AT4G20380.9 51.724 145 44 4 1 135 1 129 1.03e-37 125
Msa0286370 AT4G20380.2 50.694 144 45 4 1 134 6 133 1.37e-36 124
Msa0286370 AT4G20380.7 50.694 144 45 4 1 134 6 133 1.37e-36 124
Msa0286370 AT4G20380.6 52.083 144 43 4 1 134 1 128 2.29e-36 123
Msa0286370 AT4G20380.3 52.083 144 43 4 1 134 1 128 2.29e-36 123
Msa0286370 AT4G20380.4 52.083 144 43 4 1 134 1 128 2.29e-36 123
Msa0286370 AT4G20380.1 52.083 144 43 4 1 134 1 128 2.29e-36 123
Msa0286370 AT4G20380.5 52.083 144 43 4 1 134 1 128 2.29e-36 123
Msa0286370 AT1G32540.1 48.387 124 46 1 2 125 65 170 3.16e-36 123
Msa0286370 AT1G32540.1 45.679 81 43 1 60 139 66 146 3.81e-15 68.9
Msa0286370 AT1G32540.3 48.387 124 46 1 2 125 32 137 6.51e-36 121
Msa0286370 AT1G32540.3 45.679 81 43 1 60 139 33 113 5.96e-15 67.8
Msa0286370 AT1G32540.2 48.387 124 46 1 2 125 32 137 6.51e-36 121
Msa0286370 AT1G32540.2 45.679 81 43 1 60 139 33 113 5.96e-15 67.8
Msa0286370 AT1G32540.5 48.387 124 46 1 2 125 32 137 7.12e-36 121
Msa0286370 AT1G32540.5 45.679 81 43 1 60 139 33 113 5.35e-15 68.2
Msa0286370 AT4G20380.8 42.941 170 45 4 1 134 1 154 3.09e-33 116
Msa0286370 AT1G32540.4 48.864 88 27 1 2 89 32 101 9.71e-23 86.7
Msa0286370 AT1G32540.4 49.315 73 36 1 60 131 33 105 1.34e-14 65.9
Msa0286370 AT1G32540.6 48.864 88 27 1 2 89 32 101 9.71e-23 86.7
Msa0286370 AT1G32540.6 49.315 73 36 1 60 131 33 105 1.34e-14 65.9
Msa0286370 AT1G32540.7 48.864 88 27 1 2 89 65 134 1.27e-22 87.4
Msa0286370 AT1G32540.7 49.315 73 36 1 60 131 66 138 4.46e-15 67.8
Msa0286370 AT4G21610.2 40.777 103 59 2 34 135 34 135 1.49e-19 79.7
Msa0286370 AT4G21610.1 41.758 91 52 1 34 124 34 123 5.06e-18 75.9

Find 35 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAATGTATATGGCTCATT+TGG 0.304988 2_3:-27468161 None:intergenic
CATGAAGTTCATCATCTTCA+TGG 0.306309 2_3:+27463267 Msa0286370:CDS
GCAAAAGGAAACATATATAT+CGG 0.339511 2_3:-27463232 None:intergenic
TTCATTATGGTTAAGGCCTA+AGG 0.371757 2_3:+27463079 None:intergenic
GGCAGTTCCCGCAATGTATA+TGG 0.404946 2_3:-27468170 None:intergenic
TATATATCGGGAGGAAGAAC+AGG 0.456566 2_3:-27463219 None:intergenic
AAAACATTGCTTGCTCCTCT+AGG 0.458230 2_3:-27463171 None:intergenic
AAATGAGCCATATACATTGC+GGG 0.465147 2_3:+27468163 Msa0286370:CDS
CGGAACCACATTATGTGTAC+GGG 0.479351 2_3:+27463126 Msa0286370:CDS
ATATACATTGCGGGAACTGC+CGG 0.513570 2_3:+27468172 Msa0286370:CDS
CAAAAGGAAACATATATATC+GGG 0.515043 2_3:-27463231 None:intergenic
GCGGAACCACATTATGTGTA+CGG 0.520264 2_3:+27463125 Msa0286370:CDS
AAACATTGCTTGCTCCTCTA+GGG 0.521654 2_3:-27463170 None:intergenic
GAATTGTCACAACTTTATTG+TGG 0.525919 2_3:+27467968 Msa0286370:CDS
AAAAGTTAAACACCACCCTT+AGG 0.526780 2_3:-27463095 None:intergenic
TCATTATGGTTAAGGCCTAA+GGG 0.535606 2_3:+27463080 None:intergenic
GTATATATCATACCTGGTAC+AGG 0.538733 2_3:-27468064 None:intergenic
GAGGACACATGAGTGTTGTC+CGG 0.540488 2_3:-27468191 None:intergenic
ACAACACTCATGTGTCCTCA+TGG 0.541151 2_3:+27468195 Msa0286370:CDS
ACATTATGTGTACGGGGTGT+AGG 0.559046 2_3:+27463133 Msa0286370:CDS
TTGTCACAACTTTATTGTGG+AGG 0.579581 2_3:+27467971 Msa0286370:CDS
CAAATTGCACATTTGACTGA+GGG 0.598668 2_3:-27468222 None:intergenic
AACATCTTGCTTTACCCTAG+AGG 0.603716 2_3:+27463156 Msa0286370:CDS
TGGTACACTTACACAAACAT+TGG 0.615956 2_3:-27468253 None:intergenic
AACACTATAAATCCTGTACC+AGG 0.634087 2_3:+27468052 Msa0286370:CDS
ACAAATTGCACATTTGACTG+AGG 0.644783 2_3:-27468223 None:intergenic
AAGGAAACATATATATCGGG+AGG 0.646794 2_3:-27463228 None:intergenic
TACACCCCGTACACATAATG+TGG 0.647301 2_3:-27463131 None:intergenic
CAAATGAGCCATATACATTG+CGG 0.659290 2_3:+27468162 Msa0286370:CDS
TTGACTGAGGGAGCTCCATG+AGG 0.705071 2_3:-27468210 None:intergenic
TTATGGTTAAGGCCTAAGGG+TGG 0.712899 2_3:+27463083 None:intergenic
GGAACCACATTATGTGTACG+GGG 0.737993 2_3:+27463127 Msa0286370:CDS
TTTGTGTAAGTGTACCACGA+TGG 0.748799 2_3:+27468259 Msa0286370:CDS
ACTTTGCTAATGTACACACG+TGG 0.752607 2_3:+27468001 Msa0286370:CDS
ATATTAAGATAATTCCATCG+TGG 0.759265 2_3:-27468273 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAAAATATATTAT+GGG - chr2_3:27465706-27465725 None:intergenic 0.0%
!! AAAATTATAAAAATATATTA+TGG - chr2_3:27465707-27465726 None:intergenic 0.0%
!!! ATTTTTTAATTGAGAAATAT+AGG - chr2_3:27464374-27464393 None:intergenic 10.0%
!! TATTTCTCAATTAAAAAATA+TGG + chr2_3:27464375-27464394 Msa0286370:intron 10.0%
!! TATGAGAAAATATATATTTA+TGG - chr2_3:27465636-27465655 None:intergenic 10.0%
!!! ATTGTATTATTTTAATACAA+TGG + chr2_3:27465676-27465695 Msa0286370:intron 10.0%
!!! ATTTTTTAATTGAGAAATAT+AGG - chr2_3:27464374-27464393 None:intergenic 10.0%
!! TATTTCTCAATTAAAAAATA+TGG + chr2_3:27464375-27464394 Msa0286370:intron 10.0%
!!! TTTAAACTTTTGAAATATGT+GGG - chr2_3:27464450-27464469 None:intergenic 15.0%
!!! TTTTAAACTTTTGAAATATG+TGG - chr2_3:27464451-27464470 None:intergenic 15.0%
!! GTTTAAAAGAAATTAGAAAA+AGG + chr2_3:27464463-27464482 Msa0286370:intron 15.0%
!!! ATTTGAAATTAATAAGTGAT+GGG - chr2_3:27465022-27465041 None:intergenic 15.0%
!! AATTACAATTTACTTATTGT+GGG - chr2_3:27465350-27465369 None:intergenic 15.0%
!! AAATTACAATTTACTTATTG+TGG - chr2_3:27465351-27465370 None:intergenic 15.0%
!!! TTTTCTCAATATCATATATT+TGG + chr2_3:27465723-27465742 Msa0286370:intron 15.0%
!! TTTCTCAATATCATATATTT+GGG + chr2_3:27465724-27465743 Msa0286370:intron 15.0%
!! AATTTAACAACAAGTAAAAT+TGG + chr2_3:27466530-27466549 Msa0286370:intron 15.0%
!!! CTATTGAATTTGTAATTTTT+CGG - chr2_3:27466645-27466664 None:intergenic 15.0%
!! TTAAACATCAATTTGATAAG+AGG + chr2_3:27463830-27463849 Msa0286370:intron 20.0%
!! ATAACTTGAAGCTTAAAAAA+GGG + chr2_3:27464062-27464081 Msa0286370:intron 20.0%
!!! AGTTTTAGAGAATTAATGTT+TGG + chr2_3:27464211-27464230 Msa0286370:intron 20.0%
!! CAAGAGATATTAAAGAAAAA+CGG + chr2_3:27464256-27464275 Msa0286370:intron 20.0%
!! TAAAAATATGTTACAAAACC+TGG + chr2_3:27464296-27464315 Msa0286370:intron 20.0%
!!! TTAAACTTTTGAAATATGTG+GGG - chr2_3:27464449-27464468 None:intergenic 20.0%
!! TGTTAAGTATTATCATTCTA+GGG - chr2_3:27464552-27464571 None:intergenic 20.0%
!!! CATTTGAAATTAATAAGTGA+TGG - chr2_3:27465023-27465042 None:intergenic 20.0%
!! CATCACTTATTAATTTCAAA+TGG + chr2_3:27465021-27465040 Msa0286370:intron 20.0%
!! TAGACTTTGATAAATATATG+AGG - chr2_3:27465187-27465206 None:intergenic 20.0%
!! GTGGATAAATATAAATCTAT+TGG + chr2_3:27465283-27465302 Msa0286370:intron 20.0%
!!! ATGGATTTTATTTTTCATTG+TGG - chr2_3:27465617-27465636 None:intergenic 20.0%
!! CGAAAAATTACAAATTCAAT+AGG + chr2_3:27466643-27466662 Msa0286370:intron 20.0%
!!! AATCTTAAGGATTTTCTTTT+TGG - chr2_3:27466855-27466874 None:intergenic 20.0%
!!! CTAATTTTACAACAATCTTA+AGG - chr2_3:27466868-27466887 None:intergenic 20.0%
!! CTTAAGATTGTTGTAAAATT+AGG + chr2_3:27466866-27466885 Msa0286370:intron 20.0%
!! TTAAACATCAATTTGATAAG+AGG + chr2_3:27463830-27463849 Msa0286370:intron 20.0%
!! ATAACTTGAAGCTTAAAAAA+GGG + chr2_3:27464062-27464081 Msa0286370:intron 20.0%
!!! AGTTTTAGAGAATTAATGTT+TGG + chr2_3:27464211-27464230 Msa0286370:intron 20.0%
!! CAAGAGATATTAAAGAAAAA+CGG + chr2_3:27464256-27464275 Msa0286370:intron 20.0%
!! TAAAAATATGTTACAAAACC+TGG + chr2_3:27464296-27464315 Msa0286370:intron 20.0%
! CAAAAGGAAACATATATATC+GGG - chr2_3:27463234-27463253 None:intergenic 25.0%
! GCAAAAGGAAACATATATAT+CGG - chr2_3:27463235-27463254 None:intergenic 25.0%
!! GATATATATGTTTCCTTTTG+CGG + chr2_3:27463234-27463253 Msa0286370:CDS 25.0%
! GAAAAATCAGAAACTTGATA+AGG + chr2_3:27463300-27463319 Msa0286370:intron 25.0%
! TTAACAGTTATCAAGATTTC+AGG + chr2_3:27463573-27463592 Msa0286370:intron 25.0%
!! GTTGTAAGTGTTGTAAAATT+AGG + chr2_3:27463659-27463678 Msa0286370:intron 25.0%
!! CCTTGATTTTATATCAAGAA+GGG - chr2_3:27463960-27463979 None:intergenic 25.0%
!! TCCTTGATTTTATATCAAGA+AGG - chr2_3:27463961-27463980 None:intergenic 25.0%
! ATGAGTCTATACACAATAAT+GGG - chr2_3:27464025-27464044 None:intergenic 25.0%
! CATAACTTGAAGCTTAAAAA+AGG + chr2_3:27464061-27464080 Msa0286370:intron 25.0%
! ATTATTTATCATCTTTGACC+AGG - chr2_3:27464317-27464336 None:intergenic 25.0%
!!! TAAACTTTTGAAATATGTGG+GGG - chr2_3:27464448-27464467 None:intergenic 25.0%
! GTGTTAAGTATTATCATTCT+AGG - chr2_3:27464553-27464572 None:intergenic 25.0%
!! TAACATACATCAAGTGATTT+TGG - chr2_3:27464607-27464626 None:intergenic 25.0%
! ATGAATTTCATATCCCTTAT+GGG - chr2_3:27464817-27464836 None:intergenic 25.0%
! AATGAATTTCATATCCCTTA+TGG - chr2_3:27464818-27464837 None:intergenic 25.0%
! AAATAAATTGTGTACATCGA+GGG - chr2_3:27465061-27465080 None:intergenic 25.0%
! AGTCAATCTTATATGATGAA+AGG - chr2_3:27465142-27465161 None:intergenic 25.0%
!!! ATTGCATTATTTTGATGCAA+TGG + chr2_3:27465417-27465436 Msa0286370:intron 25.0%
!! AGTTATATTTTCTCAATGTG+GGG - chr2_3:27465536-27465555 None:intergenic 25.0%
!! GAGTTATATTTTCTCAATGT+GGG - chr2_3:27465537-27465556 None:intergenic 25.0%
!! AGAGTTATATTTTCTCAATG+TGG - chr2_3:27465538-27465557 None:intergenic 25.0%
! AGAAAATATAACTCTATGTG+TGG + chr2_3:27465543-27465562 Msa0286370:intron 25.0%
! TGTGTGGATTTATATTATAC+AGG + chr2_3:27465559-27465578 Msa0286370:intron 25.0%
! CATTATGTAATAAAACTCCA+AGG + chr2_3:27465836-27465855 Msa0286370:intron 25.0%
!!! GTTTTGTCTTTGGAAAATAT+TGG - chr2_3:27466135-27466154 None:intergenic 25.0%
!!! TACATTGAAAGTTTTGTCTT+TGG - chr2_3:27466145-27466164 None:intergenic 25.0%
! TTTGATTGTCAAATATGCAT+CGG - chr2_3:27466257-27466276 None:intergenic 25.0%
!!! TATGATGCATGTTGATAATA+CGG - chr2_3:27466359-27466378 None:intergenic 25.0%
!!! TTGAATTTGTAATTTTTCGG+TGG - chr2_3:27466642-27466661 None:intergenic 25.0%
! TGAGAAAATATTAGAGATCA+CGG + chr2_3:27466729-27466748 Msa0286370:intron 25.0%
! TGTTGTGAATGAAAAGTTAT+TGG - chr2_3:27466773-27466792 None:intergenic 25.0%
!! CCTTGATTTTATATCAAGAA+GGG - chr2_3:27463960-27463979 None:intergenic 25.0%
!! TCCTTGATTTTATATCAAGA+AGG - chr2_3:27463961-27463980 None:intergenic 25.0%
! ATGAGTCTATACACAATAAT+GGG - chr2_3:27464025-27464044 None:intergenic 25.0%
! CATAACTTGAAGCTTAAAAA+AGG + chr2_3:27464061-27464080 Msa0286370:intron 25.0%
! ATTATTTATCATCTTTGACC+AGG - chr2_3:27464317-27464336 None:intergenic 25.0%
!!! TAAGTTACTAGTTTTTGCAA+TGG + chr2_3:27467653-27467672 Msa0286370:intron 25.0%
! AAATATCACTAAAATCTAGG+AGG - chr2_3:27467863-27467882 None:intergenic 25.0%
! GCTAAATATCACTAAAATCT+AGG - chr2_3:27467866-27467885 None:intergenic 25.0%
! ATATTAAGATAATTCCATCG+TGG - chr2_3:27468276-27468295 None:intergenic 25.0%
!! TGTTTAACTTTTCAGCTATG+CGG + chr2_3:27463106-27463125 Msa0286370:exon 30.0%
ATGATAACAAAAACCGCAAA+AGG - chr2_3:27463250-27463269 None:intergenic 30.0%
AGTAAATTTGATTGCACACA+TGG + chr2_3:27463625-27463644 Msa0286370:intron 30.0%
AACACTTACAACTTAATCCA+TGG - chr2_3:27463651-27463670 None:intergenic 30.0%
ATGCTGATGAATTATGTAGA+TGG - chr2_3:27463808-27463827 None:intergenic 30.0%
AGGACTGCAAAATAAACAAA+CGG + chr2_3:27463850-27463869 Msa0286370:intron 30.0%
CCCTTCTTGATATAAAATCA+AGG + chr2_3:27463957-27463976 Msa0286370:intron 30.0%
CATGAGTCTATACACAATAA+TGG - chr2_3:27464026-27464045 None:intergenic 30.0%
TGAAGCTTAAAAAAGGGATT+TGG + chr2_3:27464068-27464087 Msa0286370:intron 30.0%
! TAGAAAATTCTCCCTTTTCA+TGG - chr2_3:27464119-27464138 None:intergenic 30.0%
GAAAAACGGTTACAAAACTT+TGG + chr2_3:27464270-27464289 Msa0286370:intron 30.0%
AAATTAGAAAAAGGAGTTCC+TGG + chr2_3:27464472-27464491 Msa0286370:intron 30.0%
AATTAGAAAAAGGAGTTCCT+GGG + chr2_3:27464473-27464492 Msa0286370:intron 30.0%
AATCACTTGATGTATGTTAG+CGG + chr2_3:27464608-27464627 Msa0286370:intron 30.0%
AATAAATTGTGTACATCGAG+GGG - chr2_3:27465060-27465079 None:intergenic 30.0%
GAAATAAATTGTGTACATCG+AGG - chr2_3:27465062-27465081 None:intergenic 30.0%
ACACAATTTATTTCATCCCA+AGG + chr2_3:27465068-27465087 Msa0286370:intron 30.0%
CACAATTTATTTCATCCCAA+GGG + chr2_3:27465069-27465088 Msa0286370:intron 30.0%
ACAATTTATTTCATCCCAAG+GGG + chr2_3:27465070-27465089 Msa0286370:intron 30.0%
TGGTAGATTTATTAACAGCT+TGG + chr2_3:27465303-27465322 Msa0286370:intron 30.0%
! GTTATATTTTCTCAATGTGG+GGG - chr2_3:27465535-27465554 None:intergenic 30.0%
GCTTGAATGATATGAGTATA+TGG - chr2_3:27465798-27465817 None:intergenic 30.0%
TATGCTTCTCAATTGTATCT+TGG - chr2_3:27465889-27465908 None:intergenic 30.0%
!!! GCATTTTAAGTTTGACAGAT+TGG + chr2_3:27466018-27466037 Msa0286370:intron 30.0%
ACTAGCTCAAATAATTAAGC+AGG + chr2_3:27466463-27466482 Msa0286370:intron 30.0%
TTAGTTACATCCATGTGTTT+GGG - chr2_3:27466497-27466516 None:intergenic 30.0%
! AAATTGGATTAGATAGAACC+TGG + chr2_3:27466546-27466565 Msa0286370:intron 30.0%
! AATTGGATTAGATAGAACCT+GGG + chr2_3:27466547-27466566 Msa0286370:intron 30.0%
!! AATTTGTAATTTTTCGGTGG+TGG - chr2_3:27466639-27466658 None:intergenic 30.0%
ATGCTGATGAATTATGTAGA+TGG - chr2_3:27463808-27463827 None:intergenic 30.0%
AGGACTGCAAAAAAAACAAA+CGG + chr2_3:27467057-27467076 Msa0286370:intron 30.0%
CCCTTCTTGATATAAAATCA+AGG + chr2_3:27463957-27463976 Msa0286370:intron 30.0%
CATGAGTCTATACACAATAA+TGG - chr2_3:27464026-27464045 None:intergenic 30.0%
TGAAGCTTAAAAAAGGGATT+TGG + chr2_3:27464068-27464087 Msa0286370:intron 30.0%
! TAGAAAATTCTCCCTTTTCA+TGG - chr2_3:27464119-27464138 None:intergenic 30.0%
GAAAAACGGTTACAAAACTT+TGG + chr2_3:27464270-27464289 Msa0286370:intron 30.0%
! CTAGAAGATTCTAGAAAAGA+AGG + chr2_3:27467818-27467837 Msa0286370:intron 30.0%
AGAAAAGAAGGAATAAGACT+TGG + chr2_3:27467830-27467849 Msa0286370:intron 30.0%
ATTACATGACTTAATGCATC+AGG + chr2_3:27467911-27467930 Msa0286370:intron 30.0%
TTACATGACTTAATGCATCA+GGG + chr2_3:27467912-27467931 Msa0286370:intron 30.0%
AAATTTCCTAATGTTCATGC+AGG + chr2_3:27467941-27467960 Msa0286370:intron 30.0%
GAATTGTCACAACTTTATTG+TGG + chr2_3:27467968-27467987 Msa0286370:CDS 30.0%
AACAACTTGGTAAACAAATC+TGG - chr2_3:27468112-27468131 None:intergenic 30.0%
AAAAGTTAAACACCACCCTT+AGG - chr2_3:27463098-27463117 None:intergenic 35.0%
AAGGAAACATATATATCGGG+AGG - chr2_3:27463231-27463250 None:intergenic 35.0%
CATGAAGTTCATCATCTTCA+TGG + chr2_3:27463267-27463286 Msa0286370:CDS 35.0%
GTACATGGTAAAAGAAGCTT+GGG + chr2_3:27463495-27463514 Msa0286370:intron 35.0%
TACATGGTAAAAGAAGCTTG+GGG + chr2_3:27463496-27463515 Msa0286370:intron 35.0%
ACTGCAAAATAAACAAACGG+TGG + chr2_3:27463853-27463872 Msa0286370:intron 35.0%
AATTACGCGGAAAATCCTTA+AGG - chr2_3:27463909-27463928 None:intergenic 35.0%
TCGCAAGAAGAAATATTAGC+AGG + chr2_3:27463989-27464008 Msa0286370:intron 35.0%
! AAGGGAGAATTTTCTACTGT+AGG + chr2_3:27464123-27464142 Msa0286370:intron 35.0%
TTAGATGTGATGCATCAAAC+TGG + chr2_3:27464504-27464523 Msa0286370:intron 35.0%
!! AAGTATTATCATTCTAGGGC+TGG - chr2_3:27464548-27464567 None:intergenic 35.0%
TACTTAACACACAGTGAAGT+TGG + chr2_3:27464563-27464582 Msa0286370:intron 35.0%
AAATCATACACCACCCATAA+GGG + chr2_3:27464801-27464820 Msa0286370:intron 35.0%
AATTTCATATCCCTTATGGG+TGG - chr2_3:27464814-27464833 None:intergenic 35.0%
ACCCATATGAACCTTATTCA+TGG + chr2_3:27464971-27464990 Msa0286370:intron 35.0%
CCCATGAATAAGGTTCATAT+GGG - chr2_3:27464975-27464994 None:intergenic 35.0%
CCCATATGAACCTTATTCAT+GGG + chr2_3:27464972-27464991 Msa0286370:intron 35.0%
TCCCATGAATAAGGTTCATA+TGG - chr2_3:27464976-27464995 None:intergenic 35.0%
CTTCTTCGATATACTTCATC+AGG + chr2_3:27465481-27465500 Msa0286370:intron 35.0%
TGCGTGTCTCATATACAATA+AGG - chr2_3:27465756-27465775 None:intergenic 35.0%
TTGGTAAATACTTCTAGCCT+TGG - chr2_3:27465856-27465875 None:intergenic 35.0%
! GTATCTTGGTGATTTGCAAT+TGG - chr2_3:27465875-27465894 None:intergenic 35.0%
CGTTGTTGATCTTAATGTCA+AGG - chr2_3:27465961-27465980 None:intergenic 35.0%
GTTAGTTACATCCATGTGTT+TGG - chr2_3:27466498-27466517 None:intergenic 35.0%
ACTGCAAAAAAAACAAACGG+TGG + chr2_3:27467060-27467079 Msa0286370:intron 35.0%
AATTACGCGGAAAATCCTTA+AGG - chr2_3:27463909-27463928 None:intergenic 35.0%
TCGCAAGAAGAAATATTAGC+AGG + chr2_3:27463989-27464008 Msa0286370:intron 35.0%
! AAGGGAGAATTTTCTACTGT+AGG + chr2_3:27464123-27464142 Msa0286370:intron 35.0%
TACATGACTTAATGCATCAG+GGG + chr2_3:27467913-27467932 Msa0286370:intron 35.0%
TTGTCACAACTTTATTGTGG+AGG + chr2_3:27467971-27467990 Msa0286370:CDS 35.0%
AACACTATAAATCCTGTACC+AGG + chr2_3:27468052-27468071 Msa0286370:CDS 35.0%
GTATATATCATACCTGGTAC+AGG - chr2_3:27468067-27468086 None:intergenic 35.0%
GTGTGTGTATATATCATACC+TGG - chr2_3:27468073-27468092 None:intergenic 35.0%
TACAAAGCACATCAACAACT+TGG - chr2_3:27468125-27468144 None:intergenic 35.0%
CAAATGAGCCATATACATTG+CGG + chr2_3:27468162-27468181 Msa0286370:CDS 35.0%
AAATGAGCCATATACATTGC+GGG + chr2_3:27468163-27468182 Msa0286370:CDS 35.0%
CAAATTGCACATTTGACTGA+GGG - chr2_3:27468225-27468244 None:intergenic 35.0%
ACAAATTGCACATTTGACTG+AGG - chr2_3:27468226-27468245 None:intergenic 35.0%
TGGTACACTTACACAAACAT+TGG - chr2_3:27468256-27468275 None:intergenic 35.0%
AACATCTTGCTTTACCCTAG+AGG + chr2_3:27463156-27463175 Msa0286370:CDS 40.0%
AAACATTGCTTGCTCCTCTA+GGG - chr2_3:27463173-27463192 None:intergenic 40.0%
AAAACATTGCTTGCTCCTCT+AGG - chr2_3:27463174-27463193 None:intergenic 40.0%
!!! GGAGCAAGCAATGTTTTTTG+TGG + chr2_3:27463177-27463196 Msa0286370:CDS 40.0%
TATATATCGGGAGGAAGAAC+AGG - chr2_3:27463222-27463241 None:intergenic 40.0%
! CATCATCTTCATGGTGATGA+TGG + chr2_3:27463276-27463295 Msa0286370:intron 40.0%
CAGTTAGAATCTCTTCGAGT+TGG - chr2_3:27463422-27463441 None:intergenic 40.0%
AAGCTATGCTACTCTATGTG+TGG + chr2_3:27463473-27463492 Msa0286370:intron 40.0%
GGTACATGGTAAAAGAAGCT+TGG + chr2_3:27463494-27463513 Msa0286370:intron 40.0%
TTTACTCTACGTACGAAGCA+TGG - chr2_3:27463611-27463630 None:intergenic 40.0%
GCAAAATAAACAAACGGTGG+AGG + chr2_3:27463856-27463875 Msa0286370:intron 40.0%
! GGGATTAGCGTATAATTACG+CGG - chr2_3:27463922-27463941 None:intergenic 40.0%
TAATTATACGCTAATCCCCC+AGG + chr2_3:27463924-27463943 Msa0286370:intron 40.0%
AGAAGGGTCTGTTAAATCCT+GGG - chr2_3:27463944-27463963 None:intergenic 40.0%
AAGAAGGGTCTGTTAAATCC+TGG - chr2_3:27463945-27463964 None:intergenic 40.0%
ACTGCTCACTAACCATGAAA+AGG + chr2_3:27464104-27464123 Msa0286370:intron 40.0%
CTGCTCACTAACCATGAAAA+GGG + chr2_3:27464105-27464124 Msa0286370:intron 40.0%
ACGAAAATACCACTTGAGAG+GGG - chr2_3:27464163-27464182 None:intergenic 40.0%
CACGAAAATACCACTTGAGA+GGG - chr2_3:27464164-27464183 None:intergenic 40.0%
! CACATCTAAGATGTTAACCC+AGG - chr2_3:27464493-27464512 None:intergenic 40.0%
GAGCACTCATGAAATAATCC+AGG - chr2_3:27464705-27464724 None:intergenic 40.0%
CAAATCATACACCACCCATA+AGG + chr2_3:27464800-27464819 Msa0286370:intron 40.0%
CTAGACACTGCATTATTGAG+AGG - chr2_3:27464860-27464879 None:intergenic 40.0%
! GATTGGTGATCCCATGAATA+AGG - chr2_3:27464985-27465004 None:intergenic 40.0%
GATCACCAATCACAAAGGTT+GGG + chr2_3:27464994-27465013 Msa0286370:intron 40.0%
AAGCGACATCACTATCAATG+TGG + chr2_3:27465264-27465283 Msa0286370:intron 40.0%
TTGTTAACACTAGCTGAGCT+AGG + chr2_3:27465931-27465950 Msa0286370:intron 40.0%
GGAATATGTACCCAAACACA+TGG + chr2_3:27466484-27466503 Msa0286370:intron 40.0%
TGGTGAAGCTATGATTTACG+GGG - chr2_3:27466619-27466638 None:intergenic 40.0%
GTGGTGAAGCTATGATTTAC+GGG - chr2_3:27466620-27466639 None:intergenic 40.0%
GGTGGTGAAGCTATGATTTA+CGG - chr2_3:27466621-27466640 None:intergenic 40.0%
GCAAAAAAAACAAACGGTGG+AGG + chr2_3:27467063-27467082 Msa0286370:intron 40.0%
! GGGATTAGCGTATAATTACG+CGG - chr2_3:27463922-27463941 None:intergenic 40.0%
TAATTATACGCTAATCCCCC+AGG + chr2_3:27463924-27463943 Msa0286370:intron 40.0%
AGAAGGGTCTGTTAAATCCT+GGG - chr2_3:27463944-27463963 None:intergenic 40.0%
AAGAAGGGTCTGTTAAATCC+TGG - chr2_3:27463945-27463964 None:intergenic 40.0%
ACTGCTCACTAACCATGAAA+AGG + chr2_3:27464104-27464123 Msa0286370:intron 40.0%
CTGCTCACTAACCATGAAAA+GGG + chr2_3:27464105-27464124 Msa0286370:intron 40.0%
ACGAAAATACCACTTGAGAG+GGG - chr2_3:27464163-27464182 None:intergenic 40.0%
CACGAAAATACCACTTGAGA+GGG - chr2_3:27464164-27464183 None:intergenic 40.0%
!! TTCTAGAATGTGCCTTGTGT+AGG - chr2_3:27467804-27467823 None:intergenic 40.0%
TCCTAATGTTCATGCAGGAT+TGG + chr2_3:27467946-27467965 Msa0286370:intron 40.0%
TCCAATCCTGCATGAACATT+AGG - chr2_3:27467950-27467969 None:intergenic 40.0%
ACTTTGCTAATGTACACACG+TGG + chr2_3:27468001-27468020 Msa0286370:CDS 40.0%
CGCAATGTATATGGCTCATT+TGG - chr2_3:27468164-27468183 None:intergenic 40.0%
TTTGTGTAAGTGTACCACGA+TGG + chr2_3:27468259-27468278 Msa0286370:CDS 40.0%
GCGGAACCACATTATGTGTA+CGG + chr2_3:27463125-27463144 Msa0286370:CDS 45.0%
CGGAACCACATTATGTGTAC+GGG + chr2_3:27463126-27463145 Msa0286370:CDS 45.0%
GGAACCACATTATGTGTACG+GGG + chr2_3:27463127-27463146 Msa0286370:CDS 45.0%
TACACCCCGTACACATAATG+TGG - chr2_3:27463134-27463153 None:intergenic 45.0%
ACATTATGTGTACGGGGTGT+AGG + chr2_3:27463133-27463152 Msa0286370:CDS 45.0%
GCTACTCTATGTGTGGTACA+TGG + chr2_3:27463480-27463499 Msa0286370:intron 45.0%
TTTGATTGCACACATGGCCA+TGG + chr2_3:27463631-27463650 Msa0286370:intron 45.0%
AAGGGTCTGTTAAATCCTGG+GGG - chr2_3:27463942-27463961 None:intergenic 45.0%
GAAGGGTCTGTTAAATCCTG+GGG - chr2_3:27463943-27463962 None:intergenic 45.0%
ATTTCTACTCCCCTCTCAAG+TGG + chr2_3:27464151-27464170 Msa0286370:intron 45.0%
GCACGAAAATACCACTTGAG+AGG - chr2_3:27464165-27464184 None:intergenic 45.0%
ACCTATGTGAGTGTCAAGTG+GGG - chr2_3:27464759-27464778 None:intergenic 45.0%
CACCTATGTGAGTGTCAAGT+GGG - chr2_3:27464760-27464779 None:intergenic 45.0%
TCACCTATGTGAGTGTCAAG+TGG - chr2_3:27464761-27464780 None:intergenic 45.0%
TCTCACACACACCATAGGAA+AGG + chr2_3:27464884-27464903 Msa0286370:intron 45.0%
CTCACACACACCATAGGAAA+GGG + chr2_3:27464885-27464904 Msa0286370:intron 45.0%
TTGTTCTCGTCCCTTTCCTA+TGG - chr2_3:27464898-27464917 None:intergenic 45.0%
CATGGGATCACCAATCACAA+AGG + chr2_3:27464989-27465008 Msa0286370:intron 45.0%
GGATCACCAATCACAAAGGT+TGG + chr2_3:27464993-27465012 Msa0286370:intron 45.0%
TTGTGTACATCGAGGGGATT+GGG - chr2_3:27465054-27465073 None:intergenic 45.0%
ATTGTGTACATCGAGGGGAT+TGG - chr2_3:27465055-27465074 None:intergenic 45.0%
GCTACTAAACAAAGCCCCTT+GGG - chr2_3:27465087-27465106 None:intergenic 45.0%
AGCTACTAAACAAAGCCCCT+TGG - chr2_3:27465088-27465107 None:intergenic 45.0%
TATACTATGCAATGTCGCCC+AGG - chr2_3:27466567-27466586 None:intergenic 45.0%
AAGGGTCTGTTAAATCCTGG+GGG - chr2_3:27463942-27463961 None:intergenic 45.0%
GAAGGGTCTGTTAAATCCTG+GGG - chr2_3:27463943-27463962 None:intergenic 45.0%
ATTTCTACTCCCCTCTCAAG+TGG + chr2_3:27464151-27464170 Msa0286370:intron 45.0%
GCACGAAAATACCACTTGAG+AGG - chr2_3:27464165-27464184 None:intergenic 45.0%
TCTGATAGGACACCTACACA+AGG + chr2_3:27467789-27467808 Msa0286370:intron 45.0%
ATATACATTGCGGGAACTGC+CGG + chr2_3:27468172-27468191 Msa0286370:CDS 45.0%
ACAACACTCATGTGTCCTCA+TGG + chr2_3:27468195-27468214 Msa0286370:CDS 45.0%
!!! AAAATTAATTAACTAATTTT+TGG + chr2_3:27464917-27464936 Msa0286370:intron 5.0%
TGCTGATCGCACTGTCCTTA+AGG + chr2_3:27463891-27463910 Msa0286370:intron 50.0%
AAATAATCCAGGCACGCGCA+CGG - chr2_3:27464694-27464713 None:intergenic 50.0%
TGGGATCTTGGCGAAATCTC+TGG - chr2_3:27464727-27464746 None:intergenic 50.0%
TCGCCAAGATCCCATACAAG+CGG + chr2_3:27464733-27464752 Msa0286370:intron 50.0%
GCACTTCTCACACACACCAT+AGG + chr2_3:27464879-27464898 Msa0286370:intron 50.0%
GGGAACCCAACCTTTGTGAT+TGG - chr2_3:27465002-27465021 None:intergenic 50.0%
TGCAGATCGCACTGTCCTTA+AGG + chr2_3:27467098-27467117 Msa0286370:intron 50.0%
GGCAGTTCCCGCAATGTATA+TGG - chr2_3:27468173-27468192 None:intergenic 50.0%
! GAGGACACATGAGTGTTGTC+CGG - chr2_3:27468194-27468213 None:intergenic 50.0%
GCCAACGGCAAGAATTGTGG+GGG - chr2_3:27464652-27464671 None:intergenic 55.0%
CGCCAACGGCAAGAATTGTG+GGG - chr2_3:27464653-27464672 None:intergenic 55.0%
GCGCCAACGGCAAGAATTGT+GGG - chr2_3:27464654-27464673 None:intergenic 55.0%
AGCGCCAACGGCAAGAATTG+TGG - chr2_3:27464655-27464674 None:intergenic 55.0%
AATTCTTGCCGTTGGCGCTG+TGG + chr2_3:27464656-27464675 Msa0286370:intron 55.0%
TCAAGTGGGGCCGCTTGTAT+GGG - chr2_3:27464746-27464765 None:intergenic 55.0%
GCCCCACTTGACACTCACAT+AGG + chr2_3:27464755-27464774 Msa0286370:intron 55.0%
TTGACTGAGGGAGCTCCATG+AGG - chr2_3:27468213-27468232 None:intergenic 55.0%
! TTGTGGGGGCGTGATGCGAA+TGG - chr2_3:27464638-27464657 None:intergenic 60.0%
GCCCCCACAATTCTTGCCGT+TGG + chr2_3:27464648-27464667 Msa0286370:intron 60.0%
GGGCCGCTTGTATGGGATCT+TGG - chr2_3:27464739-27464758 None:intergenic 60.0%
GTCAAGTGGGGCCGCTTGTA+TGG - chr2_3:27464747-27464766 None:intergenic 60.0%
TTCGCGCACCACAGCGCCAA+CGG - chr2_3:27464667-27464686 None:intergenic 65.0%
TGGCGCTGTGGTGCGCGAAT+AGG + chr2_3:27464668-27464687 Msa0286370:intron 65.0%
GAATAGGCCGTGCGCGTGCC+TGG + chr2_3:27464684-27464703 Msa0286370:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 27463094 27468305 27463094 ID=Msa0286370;Name=Msa0286370
chr2_3 mRNA 27463094 27468305 27463094 ID=Msa0286370-mRNA-1;Parent=Msa0286370;Name=Msa0286370-mRNA-1;_AED=0.25;_eAED=0.30;_QI=29|0|0|1|0|0|3|0|143
chr2_3 exon 27463094 27463288 27463094 ID=Msa0286370-mRNA-1:exon:9858;Parent=Msa0286370-mRNA-1
chr2_3 exon 27467963 27468073 27467963 ID=Msa0286370-mRNA-1:exon:9859;Parent=Msa0286370-mRNA-1
chr2_3 exon 27468154 27468305 27468154 ID=Msa0286370-mRNA-1:exon:9860;Parent=Msa0286370-mRNA-1
chr2_3 five_prime_UTR 27463094 27463122 27463094 ID=Msa0286370-mRNA-1:five_prime_utr;Parent=Msa0286370-mRNA-1
chr2_3 CDS 27463123 27463288 27463123 ID=Msa0286370-mRNA-1:cds;Parent=Msa0286370-mRNA-1
chr2_3 CDS 27467963 27468073 27467963 ID=Msa0286370-mRNA-1:cds;Parent=Msa0286370-mRNA-1
chr2_3 CDS 27468154 27468305 27468154 ID=Msa0286370-mRNA-1:cds;Parent=Msa0286370-mRNA-1
Gene Sequence

>Msa0286370

ATGCGGAACCACATTATGTGTACGGGGTGTAGGAACATCTTGCTTTACCCTAGAGGAGCAAGCAATGTTTTTTGTGGATTGTGCAACACAATTACACCTGTTCTTCCTCCCGATATATATGTTTCCTTTTGCGGTTTTTGTTATCATGAAGTTCATCATCTTCATGGATTGGAATTGTCACAACTTTATTGTGGAGGCTGTAGAACTTTGCTAATGTACACACGTGGAGCTACTAGCGTGAGATGTTCATGTTGTAACACTATAAATCCTGTACCAGATTCTAACCAAATGAGCCATATACATTGCGGGAACTGCCGGACAACACTCATGTGTCCTCATGGAGCTCCCTCAGTCAAATGTGCAATTTGTCATATTACCAATGTTTGTGTAAGTGTACCACGATGGAATTATCTTAATATATATGATCTA

Protein sequence

>Msa0286370

MRNHIMCTGCRNILLYPRGASNVFCGLCNTITPVLPPDIYVSFCGFCYHEVHHLHGLELSQLYCGGCRTLLMYTRGATSVRCSCCNTINPVPDSNQMSHIHCGNCRTTLMCPHGAPSVKCAICHITNVCVSVPRWNYLNIYDL