Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286370 | XP_004488206.1 | 75.969 | 129 | 12 | 2 | 1 | 128 | 1 | 111 | 3.12e-57 | 186 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286370 | sp|Q6ASS2|LOL3_ORYSJ | 53.906 | 128 | 42 | 2 | 1 | 127 | 1 | 112 | 1.24e-36 | 127 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286370 | A0A1S2XEQ1 | 75.969 | 129 | 12 | 2 | 1 | 128 | 1 | 111 | 1.49e-57 | 186 |
Gene ID | Type | Classification |
---|---|---|
Msa0286370 | TF | C2C2-LSD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286370 | MtrunA17_Chr2g0303181 | 71.970 | 132 | 15 | 3 | 1 | 128 | 1 | 114 | 1.44e-57 | 176 |
Msa0286370 | MtrunA17_Chr8g0381011 | 61.765 | 136 | 33 | 2 | 1 | 135 | 1 | 118 | 1.43e-50 | 159 |
Msa0286370 | MtrunA17_Chr4g0054701 | 49.194 | 124 | 45 | 1 | 2 | 125 | 31 | 136 | 3.65e-37 | 124 |
Msa0286370 | MtrunA17_Chr4g0054701 | 45.679 | 81 | 43 | 1 | 60 | 139 | 32 | 112 | 3.38e-15 | 68.2 |
Msa0286370 | MtrunA17_Chr4g0047341 | 46.269 | 67 | 36 | 0 | 59 | 125 | 40 | 106 | 8.44e-17 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286370 | AT4G20380.9 | 51.724 | 145 | 44 | 4 | 1 | 135 | 1 | 129 | 1.03e-37 | 125 |
Msa0286370 | AT4G20380.2 | 50.694 | 144 | 45 | 4 | 1 | 134 | 6 | 133 | 1.37e-36 | 124 |
Msa0286370 | AT4G20380.7 | 50.694 | 144 | 45 | 4 | 1 | 134 | 6 | 133 | 1.37e-36 | 124 |
Msa0286370 | AT4G20380.6 | 52.083 | 144 | 43 | 4 | 1 | 134 | 1 | 128 | 2.29e-36 | 123 |
Msa0286370 | AT4G20380.3 | 52.083 | 144 | 43 | 4 | 1 | 134 | 1 | 128 | 2.29e-36 | 123 |
Msa0286370 | AT4G20380.4 | 52.083 | 144 | 43 | 4 | 1 | 134 | 1 | 128 | 2.29e-36 | 123 |
Msa0286370 | AT4G20380.1 | 52.083 | 144 | 43 | 4 | 1 | 134 | 1 | 128 | 2.29e-36 | 123 |
Msa0286370 | AT4G20380.5 | 52.083 | 144 | 43 | 4 | 1 | 134 | 1 | 128 | 2.29e-36 | 123 |
Msa0286370 | AT1G32540.1 | 48.387 | 124 | 46 | 1 | 2 | 125 | 65 | 170 | 3.16e-36 | 123 |
Msa0286370 | AT1G32540.1 | 45.679 | 81 | 43 | 1 | 60 | 139 | 66 | 146 | 3.81e-15 | 68.9 |
Msa0286370 | AT1G32540.3 | 48.387 | 124 | 46 | 1 | 2 | 125 | 32 | 137 | 6.51e-36 | 121 |
Msa0286370 | AT1G32540.3 | 45.679 | 81 | 43 | 1 | 60 | 139 | 33 | 113 | 5.96e-15 | 67.8 |
Msa0286370 | AT1G32540.2 | 48.387 | 124 | 46 | 1 | 2 | 125 | 32 | 137 | 6.51e-36 | 121 |
Msa0286370 | AT1G32540.2 | 45.679 | 81 | 43 | 1 | 60 | 139 | 33 | 113 | 5.96e-15 | 67.8 |
Msa0286370 | AT1G32540.5 | 48.387 | 124 | 46 | 1 | 2 | 125 | 32 | 137 | 7.12e-36 | 121 |
Msa0286370 | AT1G32540.5 | 45.679 | 81 | 43 | 1 | 60 | 139 | 33 | 113 | 5.35e-15 | 68.2 |
Msa0286370 | AT4G20380.8 | 42.941 | 170 | 45 | 4 | 1 | 134 | 1 | 154 | 3.09e-33 | 116 |
Msa0286370 | AT1G32540.4 | 48.864 | 88 | 27 | 1 | 2 | 89 | 32 | 101 | 9.71e-23 | 86.7 |
Msa0286370 | AT1G32540.4 | 49.315 | 73 | 36 | 1 | 60 | 131 | 33 | 105 | 1.34e-14 | 65.9 |
Msa0286370 | AT1G32540.6 | 48.864 | 88 | 27 | 1 | 2 | 89 | 32 | 101 | 9.71e-23 | 86.7 |
Msa0286370 | AT1G32540.6 | 49.315 | 73 | 36 | 1 | 60 | 131 | 33 | 105 | 1.34e-14 | 65.9 |
Msa0286370 | AT1G32540.7 | 48.864 | 88 | 27 | 1 | 2 | 89 | 65 | 134 | 1.27e-22 | 87.4 |
Msa0286370 | AT1G32540.7 | 49.315 | 73 | 36 | 1 | 60 | 131 | 66 | 138 | 4.46e-15 | 67.8 |
Msa0286370 | AT4G21610.2 | 40.777 | 103 | 59 | 2 | 34 | 135 | 34 | 135 | 1.49e-19 | 79.7 |
Msa0286370 | AT4G21610.1 | 41.758 | 91 | 52 | 1 | 34 | 124 | 34 | 123 | 5.06e-18 | 75.9 |
Find 35 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCAATGTATATGGCTCATT+TGG | 0.304988 | 2_3:-27468161 | None:intergenic |
CATGAAGTTCATCATCTTCA+TGG | 0.306309 | 2_3:+27463267 | Msa0286370:CDS |
GCAAAAGGAAACATATATAT+CGG | 0.339511 | 2_3:-27463232 | None:intergenic |
TTCATTATGGTTAAGGCCTA+AGG | 0.371757 | 2_3:+27463079 | None:intergenic |
GGCAGTTCCCGCAATGTATA+TGG | 0.404946 | 2_3:-27468170 | None:intergenic |
TATATATCGGGAGGAAGAAC+AGG | 0.456566 | 2_3:-27463219 | None:intergenic |
AAAACATTGCTTGCTCCTCT+AGG | 0.458230 | 2_3:-27463171 | None:intergenic |
AAATGAGCCATATACATTGC+GGG | 0.465147 | 2_3:+27468163 | Msa0286370:CDS |
CGGAACCACATTATGTGTAC+GGG | 0.479351 | 2_3:+27463126 | Msa0286370:CDS |
ATATACATTGCGGGAACTGC+CGG | 0.513570 | 2_3:+27468172 | Msa0286370:CDS |
CAAAAGGAAACATATATATC+GGG | 0.515043 | 2_3:-27463231 | None:intergenic |
GCGGAACCACATTATGTGTA+CGG | 0.520264 | 2_3:+27463125 | Msa0286370:CDS |
AAACATTGCTTGCTCCTCTA+GGG | 0.521654 | 2_3:-27463170 | None:intergenic |
GAATTGTCACAACTTTATTG+TGG | 0.525919 | 2_3:+27467968 | Msa0286370:CDS |
AAAAGTTAAACACCACCCTT+AGG | 0.526780 | 2_3:-27463095 | None:intergenic |
TCATTATGGTTAAGGCCTAA+GGG | 0.535606 | 2_3:+27463080 | None:intergenic |
GTATATATCATACCTGGTAC+AGG | 0.538733 | 2_3:-27468064 | None:intergenic |
GAGGACACATGAGTGTTGTC+CGG | 0.540488 | 2_3:-27468191 | None:intergenic |
ACAACACTCATGTGTCCTCA+TGG | 0.541151 | 2_3:+27468195 | Msa0286370:CDS |
ACATTATGTGTACGGGGTGT+AGG | 0.559046 | 2_3:+27463133 | Msa0286370:CDS |
TTGTCACAACTTTATTGTGG+AGG | 0.579581 | 2_3:+27467971 | Msa0286370:CDS |
CAAATTGCACATTTGACTGA+GGG | 0.598668 | 2_3:-27468222 | None:intergenic |
AACATCTTGCTTTACCCTAG+AGG | 0.603716 | 2_3:+27463156 | Msa0286370:CDS |
TGGTACACTTACACAAACAT+TGG | 0.615956 | 2_3:-27468253 | None:intergenic |
AACACTATAAATCCTGTACC+AGG | 0.634087 | 2_3:+27468052 | Msa0286370:CDS |
ACAAATTGCACATTTGACTG+AGG | 0.644783 | 2_3:-27468223 | None:intergenic |
AAGGAAACATATATATCGGG+AGG | 0.646794 | 2_3:-27463228 | None:intergenic |
TACACCCCGTACACATAATG+TGG | 0.647301 | 2_3:-27463131 | None:intergenic |
CAAATGAGCCATATACATTG+CGG | 0.659290 | 2_3:+27468162 | Msa0286370:CDS |
TTGACTGAGGGAGCTCCATG+AGG | 0.705071 | 2_3:-27468210 | None:intergenic |
TTATGGTTAAGGCCTAAGGG+TGG | 0.712899 | 2_3:+27463083 | None:intergenic |
GGAACCACATTATGTGTACG+GGG | 0.737993 | 2_3:+27463127 | Msa0286370:CDS |
TTTGTGTAAGTGTACCACGA+TGG | 0.748799 | 2_3:+27468259 | Msa0286370:CDS |
ACTTTGCTAATGTACACACG+TGG | 0.752607 | 2_3:+27468001 | Msa0286370:CDS |
ATATTAAGATAATTCCATCG+TGG | 0.759265 | 2_3:-27468273 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTATAAAAATATATTAT+GGG | - | chr2_3:27465706-27465725 | None:intergenic | 0.0% |
!! | AAAATTATAAAAATATATTA+TGG | - | chr2_3:27465707-27465726 | None:intergenic | 0.0% |
!!! | ATTTTTTAATTGAGAAATAT+AGG | - | chr2_3:27464374-27464393 | None:intergenic | 10.0% |
!! | TATTTCTCAATTAAAAAATA+TGG | + | chr2_3:27464375-27464394 | Msa0286370:intron | 10.0% |
!! | TATGAGAAAATATATATTTA+TGG | - | chr2_3:27465636-27465655 | None:intergenic | 10.0% |
!!! | ATTGTATTATTTTAATACAA+TGG | + | chr2_3:27465676-27465695 | Msa0286370:intron | 10.0% |
!!! | ATTTTTTAATTGAGAAATAT+AGG | - | chr2_3:27464374-27464393 | None:intergenic | 10.0% |
!! | TATTTCTCAATTAAAAAATA+TGG | + | chr2_3:27464375-27464394 | Msa0286370:intron | 10.0% |
!!! | TTTAAACTTTTGAAATATGT+GGG | - | chr2_3:27464450-27464469 | None:intergenic | 15.0% |
!!! | TTTTAAACTTTTGAAATATG+TGG | - | chr2_3:27464451-27464470 | None:intergenic | 15.0% |
!! | GTTTAAAAGAAATTAGAAAA+AGG | + | chr2_3:27464463-27464482 | Msa0286370:intron | 15.0% |
!!! | ATTTGAAATTAATAAGTGAT+GGG | - | chr2_3:27465022-27465041 | None:intergenic | 15.0% |
!! | AATTACAATTTACTTATTGT+GGG | - | chr2_3:27465350-27465369 | None:intergenic | 15.0% |
!! | AAATTACAATTTACTTATTG+TGG | - | chr2_3:27465351-27465370 | None:intergenic | 15.0% |
!!! | TTTTCTCAATATCATATATT+TGG | + | chr2_3:27465723-27465742 | Msa0286370:intron | 15.0% |
!! | TTTCTCAATATCATATATTT+GGG | + | chr2_3:27465724-27465743 | Msa0286370:intron | 15.0% |
!! | AATTTAACAACAAGTAAAAT+TGG | + | chr2_3:27466530-27466549 | Msa0286370:intron | 15.0% |
!!! | CTATTGAATTTGTAATTTTT+CGG | - | chr2_3:27466645-27466664 | None:intergenic | 15.0% |
!! | TTAAACATCAATTTGATAAG+AGG | + | chr2_3:27463830-27463849 | Msa0286370:intron | 20.0% |
!! | ATAACTTGAAGCTTAAAAAA+GGG | + | chr2_3:27464062-27464081 | Msa0286370:intron | 20.0% |
!!! | AGTTTTAGAGAATTAATGTT+TGG | + | chr2_3:27464211-27464230 | Msa0286370:intron | 20.0% |
!! | CAAGAGATATTAAAGAAAAA+CGG | + | chr2_3:27464256-27464275 | Msa0286370:intron | 20.0% |
!! | TAAAAATATGTTACAAAACC+TGG | + | chr2_3:27464296-27464315 | Msa0286370:intron | 20.0% |
!!! | TTAAACTTTTGAAATATGTG+GGG | - | chr2_3:27464449-27464468 | None:intergenic | 20.0% |
!! | TGTTAAGTATTATCATTCTA+GGG | - | chr2_3:27464552-27464571 | None:intergenic | 20.0% |
!!! | CATTTGAAATTAATAAGTGA+TGG | - | chr2_3:27465023-27465042 | None:intergenic | 20.0% |
!! | CATCACTTATTAATTTCAAA+TGG | + | chr2_3:27465021-27465040 | Msa0286370:intron | 20.0% |
!! | TAGACTTTGATAAATATATG+AGG | - | chr2_3:27465187-27465206 | None:intergenic | 20.0% |
!! | GTGGATAAATATAAATCTAT+TGG | + | chr2_3:27465283-27465302 | Msa0286370:intron | 20.0% |
!!! | ATGGATTTTATTTTTCATTG+TGG | - | chr2_3:27465617-27465636 | None:intergenic | 20.0% |
!! | CGAAAAATTACAAATTCAAT+AGG | + | chr2_3:27466643-27466662 | Msa0286370:intron | 20.0% |
!!! | AATCTTAAGGATTTTCTTTT+TGG | - | chr2_3:27466855-27466874 | None:intergenic | 20.0% |
!!! | CTAATTTTACAACAATCTTA+AGG | - | chr2_3:27466868-27466887 | None:intergenic | 20.0% |
!! | CTTAAGATTGTTGTAAAATT+AGG | + | chr2_3:27466866-27466885 | Msa0286370:intron | 20.0% |
!! | TTAAACATCAATTTGATAAG+AGG | + | chr2_3:27463830-27463849 | Msa0286370:intron | 20.0% |
!! | ATAACTTGAAGCTTAAAAAA+GGG | + | chr2_3:27464062-27464081 | Msa0286370:intron | 20.0% |
!!! | AGTTTTAGAGAATTAATGTT+TGG | + | chr2_3:27464211-27464230 | Msa0286370:intron | 20.0% |
!! | CAAGAGATATTAAAGAAAAA+CGG | + | chr2_3:27464256-27464275 | Msa0286370:intron | 20.0% |
!! | TAAAAATATGTTACAAAACC+TGG | + | chr2_3:27464296-27464315 | Msa0286370:intron | 20.0% |
! | CAAAAGGAAACATATATATC+GGG | - | chr2_3:27463234-27463253 | None:intergenic | 25.0% |
! | GCAAAAGGAAACATATATAT+CGG | - | chr2_3:27463235-27463254 | None:intergenic | 25.0% |
!! | GATATATATGTTTCCTTTTG+CGG | + | chr2_3:27463234-27463253 | Msa0286370:CDS | 25.0% |
! | GAAAAATCAGAAACTTGATA+AGG | + | chr2_3:27463300-27463319 | Msa0286370:intron | 25.0% |
! | TTAACAGTTATCAAGATTTC+AGG | + | chr2_3:27463573-27463592 | Msa0286370:intron | 25.0% |
!! | GTTGTAAGTGTTGTAAAATT+AGG | + | chr2_3:27463659-27463678 | Msa0286370:intron | 25.0% |
!! | CCTTGATTTTATATCAAGAA+GGG | - | chr2_3:27463960-27463979 | None:intergenic | 25.0% |
!! | TCCTTGATTTTATATCAAGA+AGG | - | chr2_3:27463961-27463980 | None:intergenic | 25.0% |
! | ATGAGTCTATACACAATAAT+GGG | - | chr2_3:27464025-27464044 | None:intergenic | 25.0% |
! | CATAACTTGAAGCTTAAAAA+AGG | + | chr2_3:27464061-27464080 | Msa0286370:intron | 25.0% |
! | ATTATTTATCATCTTTGACC+AGG | - | chr2_3:27464317-27464336 | None:intergenic | 25.0% |
!!! | TAAACTTTTGAAATATGTGG+GGG | - | chr2_3:27464448-27464467 | None:intergenic | 25.0% |
! | GTGTTAAGTATTATCATTCT+AGG | - | chr2_3:27464553-27464572 | None:intergenic | 25.0% |
!! | TAACATACATCAAGTGATTT+TGG | - | chr2_3:27464607-27464626 | None:intergenic | 25.0% |
! | ATGAATTTCATATCCCTTAT+GGG | - | chr2_3:27464817-27464836 | None:intergenic | 25.0% |
! | AATGAATTTCATATCCCTTA+TGG | - | chr2_3:27464818-27464837 | None:intergenic | 25.0% |
! | AAATAAATTGTGTACATCGA+GGG | - | chr2_3:27465061-27465080 | None:intergenic | 25.0% |
! | AGTCAATCTTATATGATGAA+AGG | - | chr2_3:27465142-27465161 | None:intergenic | 25.0% |
!!! | ATTGCATTATTTTGATGCAA+TGG | + | chr2_3:27465417-27465436 | Msa0286370:intron | 25.0% |
!! | AGTTATATTTTCTCAATGTG+GGG | - | chr2_3:27465536-27465555 | None:intergenic | 25.0% |
!! | GAGTTATATTTTCTCAATGT+GGG | - | chr2_3:27465537-27465556 | None:intergenic | 25.0% |
!! | AGAGTTATATTTTCTCAATG+TGG | - | chr2_3:27465538-27465557 | None:intergenic | 25.0% |
! | AGAAAATATAACTCTATGTG+TGG | + | chr2_3:27465543-27465562 | Msa0286370:intron | 25.0% |
! | TGTGTGGATTTATATTATAC+AGG | + | chr2_3:27465559-27465578 | Msa0286370:intron | 25.0% |
! | CATTATGTAATAAAACTCCA+AGG | + | chr2_3:27465836-27465855 | Msa0286370:intron | 25.0% |
!!! | GTTTTGTCTTTGGAAAATAT+TGG | - | chr2_3:27466135-27466154 | None:intergenic | 25.0% |
!!! | TACATTGAAAGTTTTGTCTT+TGG | - | chr2_3:27466145-27466164 | None:intergenic | 25.0% |
! | TTTGATTGTCAAATATGCAT+CGG | - | chr2_3:27466257-27466276 | None:intergenic | 25.0% |
!!! | TATGATGCATGTTGATAATA+CGG | - | chr2_3:27466359-27466378 | None:intergenic | 25.0% |
!!! | TTGAATTTGTAATTTTTCGG+TGG | - | chr2_3:27466642-27466661 | None:intergenic | 25.0% |
! | TGAGAAAATATTAGAGATCA+CGG | + | chr2_3:27466729-27466748 | Msa0286370:intron | 25.0% |
! | TGTTGTGAATGAAAAGTTAT+TGG | - | chr2_3:27466773-27466792 | None:intergenic | 25.0% |
!! | CCTTGATTTTATATCAAGAA+GGG | - | chr2_3:27463960-27463979 | None:intergenic | 25.0% |
!! | TCCTTGATTTTATATCAAGA+AGG | - | chr2_3:27463961-27463980 | None:intergenic | 25.0% |
! | ATGAGTCTATACACAATAAT+GGG | - | chr2_3:27464025-27464044 | None:intergenic | 25.0% |
! | CATAACTTGAAGCTTAAAAA+AGG | + | chr2_3:27464061-27464080 | Msa0286370:intron | 25.0% |
! | ATTATTTATCATCTTTGACC+AGG | - | chr2_3:27464317-27464336 | None:intergenic | 25.0% |
!!! | TAAGTTACTAGTTTTTGCAA+TGG | + | chr2_3:27467653-27467672 | Msa0286370:intron | 25.0% |
! | AAATATCACTAAAATCTAGG+AGG | - | chr2_3:27467863-27467882 | None:intergenic | 25.0% |
! | GCTAAATATCACTAAAATCT+AGG | - | chr2_3:27467866-27467885 | None:intergenic | 25.0% |
! | ATATTAAGATAATTCCATCG+TGG | - | chr2_3:27468276-27468295 | None:intergenic | 25.0% |
!! | TGTTTAACTTTTCAGCTATG+CGG | + | chr2_3:27463106-27463125 | Msa0286370:exon | 30.0% |
ATGATAACAAAAACCGCAAA+AGG | - | chr2_3:27463250-27463269 | None:intergenic | 30.0% | |
AGTAAATTTGATTGCACACA+TGG | + | chr2_3:27463625-27463644 | Msa0286370:intron | 30.0% | |
AACACTTACAACTTAATCCA+TGG | - | chr2_3:27463651-27463670 | None:intergenic | 30.0% | |
ATGCTGATGAATTATGTAGA+TGG | - | chr2_3:27463808-27463827 | None:intergenic | 30.0% | |
AGGACTGCAAAATAAACAAA+CGG | + | chr2_3:27463850-27463869 | Msa0286370:intron | 30.0% | |
CCCTTCTTGATATAAAATCA+AGG | + | chr2_3:27463957-27463976 | Msa0286370:intron | 30.0% | |
CATGAGTCTATACACAATAA+TGG | - | chr2_3:27464026-27464045 | None:intergenic | 30.0% | |
TGAAGCTTAAAAAAGGGATT+TGG | + | chr2_3:27464068-27464087 | Msa0286370:intron | 30.0% | |
! | TAGAAAATTCTCCCTTTTCA+TGG | - | chr2_3:27464119-27464138 | None:intergenic | 30.0% |
GAAAAACGGTTACAAAACTT+TGG | + | chr2_3:27464270-27464289 | Msa0286370:intron | 30.0% | |
AAATTAGAAAAAGGAGTTCC+TGG | + | chr2_3:27464472-27464491 | Msa0286370:intron | 30.0% | |
AATTAGAAAAAGGAGTTCCT+GGG | + | chr2_3:27464473-27464492 | Msa0286370:intron | 30.0% | |
AATCACTTGATGTATGTTAG+CGG | + | chr2_3:27464608-27464627 | Msa0286370:intron | 30.0% | |
AATAAATTGTGTACATCGAG+GGG | - | chr2_3:27465060-27465079 | None:intergenic | 30.0% | |
GAAATAAATTGTGTACATCG+AGG | - | chr2_3:27465062-27465081 | None:intergenic | 30.0% | |
ACACAATTTATTTCATCCCA+AGG | + | chr2_3:27465068-27465087 | Msa0286370:intron | 30.0% | |
CACAATTTATTTCATCCCAA+GGG | + | chr2_3:27465069-27465088 | Msa0286370:intron | 30.0% | |
ACAATTTATTTCATCCCAAG+GGG | + | chr2_3:27465070-27465089 | Msa0286370:intron | 30.0% | |
TGGTAGATTTATTAACAGCT+TGG | + | chr2_3:27465303-27465322 | Msa0286370:intron | 30.0% | |
! | GTTATATTTTCTCAATGTGG+GGG | - | chr2_3:27465535-27465554 | None:intergenic | 30.0% |
GCTTGAATGATATGAGTATA+TGG | - | chr2_3:27465798-27465817 | None:intergenic | 30.0% | |
TATGCTTCTCAATTGTATCT+TGG | - | chr2_3:27465889-27465908 | None:intergenic | 30.0% | |
!!! | GCATTTTAAGTTTGACAGAT+TGG | + | chr2_3:27466018-27466037 | Msa0286370:intron | 30.0% |
ACTAGCTCAAATAATTAAGC+AGG | + | chr2_3:27466463-27466482 | Msa0286370:intron | 30.0% | |
TTAGTTACATCCATGTGTTT+GGG | - | chr2_3:27466497-27466516 | None:intergenic | 30.0% | |
! | AAATTGGATTAGATAGAACC+TGG | + | chr2_3:27466546-27466565 | Msa0286370:intron | 30.0% |
! | AATTGGATTAGATAGAACCT+GGG | + | chr2_3:27466547-27466566 | Msa0286370:intron | 30.0% |
!! | AATTTGTAATTTTTCGGTGG+TGG | - | chr2_3:27466639-27466658 | None:intergenic | 30.0% |
ATGCTGATGAATTATGTAGA+TGG | - | chr2_3:27463808-27463827 | None:intergenic | 30.0% | |
AGGACTGCAAAAAAAACAAA+CGG | + | chr2_3:27467057-27467076 | Msa0286370:intron | 30.0% | |
CCCTTCTTGATATAAAATCA+AGG | + | chr2_3:27463957-27463976 | Msa0286370:intron | 30.0% | |
CATGAGTCTATACACAATAA+TGG | - | chr2_3:27464026-27464045 | None:intergenic | 30.0% | |
TGAAGCTTAAAAAAGGGATT+TGG | + | chr2_3:27464068-27464087 | Msa0286370:intron | 30.0% | |
! | TAGAAAATTCTCCCTTTTCA+TGG | - | chr2_3:27464119-27464138 | None:intergenic | 30.0% |
GAAAAACGGTTACAAAACTT+TGG | + | chr2_3:27464270-27464289 | Msa0286370:intron | 30.0% | |
! | CTAGAAGATTCTAGAAAAGA+AGG | + | chr2_3:27467818-27467837 | Msa0286370:intron | 30.0% |
AGAAAAGAAGGAATAAGACT+TGG | + | chr2_3:27467830-27467849 | Msa0286370:intron | 30.0% | |
ATTACATGACTTAATGCATC+AGG | + | chr2_3:27467911-27467930 | Msa0286370:intron | 30.0% | |
TTACATGACTTAATGCATCA+GGG | + | chr2_3:27467912-27467931 | Msa0286370:intron | 30.0% | |
AAATTTCCTAATGTTCATGC+AGG | + | chr2_3:27467941-27467960 | Msa0286370:intron | 30.0% | |
GAATTGTCACAACTTTATTG+TGG | + | chr2_3:27467968-27467987 | Msa0286370:CDS | 30.0% | |
AACAACTTGGTAAACAAATC+TGG | - | chr2_3:27468112-27468131 | None:intergenic | 30.0% | |
AAAAGTTAAACACCACCCTT+AGG | - | chr2_3:27463098-27463117 | None:intergenic | 35.0% | |
AAGGAAACATATATATCGGG+AGG | - | chr2_3:27463231-27463250 | None:intergenic | 35.0% | |
CATGAAGTTCATCATCTTCA+TGG | + | chr2_3:27463267-27463286 | Msa0286370:CDS | 35.0% | |
GTACATGGTAAAAGAAGCTT+GGG | + | chr2_3:27463495-27463514 | Msa0286370:intron | 35.0% | |
TACATGGTAAAAGAAGCTTG+GGG | + | chr2_3:27463496-27463515 | Msa0286370:intron | 35.0% | |
ACTGCAAAATAAACAAACGG+TGG | + | chr2_3:27463853-27463872 | Msa0286370:intron | 35.0% | |
AATTACGCGGAAAATCCTTA+AGG | - | chr2_3:27463909-27463928 | None:intergenic | 35.0% | |
TCGCAAGAAGAAATATTAGC+AGG | + | chr2_3:27463989-27464008 | Msa0286370:intron | 35.0% | |
! | AAGGGAGAATTTTCTACTGT+AGG | + | chr2_3:27464123-27464142 | Msa0286370:intron | 35.0% |
TTAGATGTGATGCATCAAAC+TGG | + | chr2_3:27464504-27464523 | Msa0286370:intron | 35.0% | |
!! | AAGTATTATCATTCTAGGGC+TGG | - | chr2_3:27464548-27464567 | None:intergenic | 35.0% |
TACTTAACACACAGTGAAGT+TGG | + | chr2_3:27464563-27464582 | Msa0286370:intron | 35.0% | |
AAATCATACACCACCCATAA+GGG | + | chr2_3:27464801-27464820 | Msa0286370:intron | 35.0% | |
AATTTCATATCCCTTATGGG+TGG | - | chr2_3:27464814-27464833 | None:intergenic | 35.0% | |
ACCCATATGAACCTTATTCA+TGG | + | chr2_3:27464971-27464990 | Msa0286370:intron | 35.0% | |
CCCATGAATAAGGTTCATAT+GGG | - | chr2_3:27464975-27464994 | None:intergenic | 35.0% | |
CCCATATGAACCTTATTCAT+GGG | + | chr2_3:27464972-27464991 | Msa0286370:intron | 35.0% | |
TCCCATGAATAAGGTTCATA+TGG | - | chr2_3:27464976-27464995 | None:intergenic | 35.0% | |
CTTCTTCGATATACTTCATC+AGG | + | chr2_3:27465481-27465500 | Msa0286370:intron | 35.0% | |
TGCGTGTCTCATATACAATA+AGG | - | chr2_3:27465756-27465775 | None:intergenic | 35.0% | |
TTGGTAAATACTTCTAGCCT+TGG | - | chr2_3:27465856-27465875 | None:intergenic | 35.0% | |
! | GTATCTTGGTGATTTGCAAT+TGG | - | chr2_3:27465875-27465894 | None:intergenic | 35.0% |
CGTTGTTGATCTTAATGTCA+AGG | - | chr2_3:27465961-27465980 | None:intergenic | 35.0% | |
GTTAGTTACATCCATGTGTT+TGG | - | chr2_3:27466498-27466517 | None:intergenic | 35.0% | |
ACTGCAAAAAAAACAAACGG+TGG | + | chr2_3:27467060-27467079 | Msa0286370:intron | 35.0% | |
AATTACGCGGAAAATCCTTA+AGG | - | chr2_3:27463909-27463928 | None:intergenic | 35.0% | |
TCGCAAGAAGAAATATTAGC+AGG | + | chr2_3:27463989-27464008 | Msa0286370:intron | 35.0% | |
! | AAGGGAGAATTTTCTACTGT+AGG | + | chr2_3:27464123-27464142 | Msa0286370:intron | 35.0% |
TACATGACTTAATGCATCAG+GGG | + | chr2_3:27467913-27467932 | Msa0286370:intron | 35.0% | |
TTGTCACAACTTTATTGTGG+AGG | + | chr2_3:27467971-27467990 | Msa0286370:CDS | 35.0% | |
AACACTATAAATCCTGTACC+AGG | + | chr2_3:27468052-27468071 | Msa0286370:CDS | 35.0% | |
GTATATATCATACCTGGTAC+AGG | - | chr2_3:27468067-27468086 | None:intergenic | 35.0% | |
GTGTGTGTATATATCATACC+TGG | - | chr2_3:27468073-27468092 | None:intergenic | 35.0% | |
TACAAAGCACATCAACAACT+TGG | - | chr2_3:27468125-27468144 | None:intergenic | 35.0% | |
CAAATGAGCCATATACATTG+CGG | + | chr2_3:27468162-27468181 | Msa0286370:CDS | 35.0% | |
AAATGAGCCATATACATTGC+GGG | + | chr2_3:27468163-27468182 | Msa0286370:CDS | 35.0% | |
CAAATTGCACATTTGACTGA+GGG | - | chr2_3:27468225-27468244 | None:intergenic | 35.0% | |
ACAAATTGCACATTTGACTG+AGG | - | chr2_3:27468226-27468245 | None:intergenic | 35.0% | |
TGGTACACTTACACAAACAT+TGG | - | chr2_3:27468256-27468275 | None:intergenic | 35.0% | |
AACATCTTGCTTTACCCTAG+AGG | + | chr2_3:27463156-27463175 | Msa0286370:CDS | 40.0% | |
AAACATTGCTTGCTCCTCTA+GGG | - | chr2_3:27463173-27463192 | None:intergenic | 40.0% | |
AAAACATTGCTTGCTCCTCT+AGG | - | chr2_3:27463174-27463193 | None:intergenic | 40.0% | |
!!! | GGAGCAAGCAATGTTTTTTG+TGG | + | chr2_3:27463177-27463196 | Msa0286370:CDS | 40.0% |
TATATATCGGGAGGAAGAAC+AGG | - | chr2_3:27463222-27463241 | None:intergenic | 40.0% | |
! | CATCATCTTCATGGTGATGA+TGG | + | chr2_3:27463276-27463295 | Msa0286370:intron | 40.0% |
CAGTTAGAATCTCTTCGAGT+TGG | - | chr2_3:27463422-27463441 | None:intergenic | 40.0% | |
AAGCTATGCTACTCTATGTG+TGG | + | chr2_3:27463473-27463492 | Msa0286370:intron | 40.0% | |
GGTACATGGTAAAAGAAGCT+TGG | + | chr2_3:27463494-27463513 | Msa0286370:intron | 40.0% | |
TTTACTCTACGTACGAAGCA+TGG | - | chr2_3:27463611-27463630 | None:intergenic | 40.0% | |
GCAAAATAAACAAACGGTGG+AGG | + | chr2_3:27463856-27463875 | Msa0286370:intron | 40.0% | |
! | GGGATTAGCGTATAATTACG+CGG | - | chr2_3:27463922-27463941 | None:intergenic | 40.0% |
TAATTATACGCTAATCCCCC+AGG | + | chr2_3:27463924-27463943 | Msa0286370:intron | 40.0% | |
AGAAGGGTCTGTTAAATCCT+GGG | - | chr2_3:27463944-27463963 | None:intergenic | 40.0% | |
AAGAAGGGTCTGTTAAATCC+TGG | - | chr2_3:27463945-27463964 | None:intergenic | 40.0% | |
ACTGCTCACTAACCATGAAA+AGG | + | chr2_3:27464104-27464123 | Msa0286370:intron | 40.0% | |
CTGCTCACTAACCATGAAAA+GGG | + | chr2_3:27464105-27464124 | Msa0286370:intron | 40.0% | |
ACGAAAATACCACTTGAGAG+GGG | - | chr2_3:27464163-27464182 | None:intergenic | 40.0% | |
CACGAAAATACCACTTGAGA+GGG | - | chr2_3:27464164-27464183 | None:intergenic | 40.0% | |
! | CACATCTAAGATGTTAACCC+AGG | - | chr2_3:27464493-27464512 | None:intergenic | 40.0% |
GAGCACTCATGAAATAATCC+AGG | - | chr2_3:27464705-27464724 | None:intergenic | 40.0% | |
CAAATCATACACCACCCATA+AGG | + | chr2_3:27464800-27464819 | Msa0286370:intron | 40.0% | |
CTAGACACTGCATTATTGAG+AGG | - | chr2_3:27464860-27464879 | None:intergenic | 40.0% | |
! | GATTGGTGATCCCATGAATA+AGG | - | chr2_3:27464985-27465004 | None:intergenic | 40.0% |
GATCACCAATCACAAAGGTT+GGG | + | chr2_3:27464994-27465013 | Msa0286370:intron | 40.0% | |
AAGCGACATCACTATCAATG+TGG | + | chr2_3:27465264-27465283 | Msa0286370:intron | 40.0% | |
TTGTTAACACTAGCTGAGCT+AGG | + | chr2_3:27465931-27465950 | Msa0286370:intron | 40.0% | |
GGAATATGTACCCAAACACA+TGG | + | chr2_3:27466484-27466503 | Msa0286370:intron | 40.0% | |
TGGTGAAGCTATGATTTACG+GGG | - | chr2_3:27466619-27466638 | None:intergenic | 40.0% | |
GTGGTGAAGCTATGATTTAC+GGG | - | chr2_3:27466620-27466639 | None:intergenic | 40.0% | |
GGTGGTGAAGCTATGATTTA+CGG | - | chr2_3:27466621-27466640 | None:intergenic | 40.0% | |
GCAAAAAAAACAAACGGTGG+AGG | + | chr2_3:27467063-27467082 | Msa0286370:intron | 40.0% | |
! | GGGATTAGCGTATAATTACG+CGG | - | chr2_3:27463922-27463941 | None:intergenic | 40.0% |
TAATTATACGCTAATCCCCC+AGG | + | chr2_3:27463924-27463943 | Msa0286370:intron | 40.0% | |
AGAAGGGTCTGTTAAATCCT+GGG | - | chr2_3:27463944-27463963 | None:intergenic | 40.0% | |
AAGAAGGGTCTGTTAAATCC+TGG | - | chr2_3:27463945-27463964 | None:intergenic | 40.0% | |
ACTGCTCACTAACCATGAAA+AGG | + | chr2_3:27464104-27464123 | Msa0286370:intron | 40.0% | |
CTGCTCACTAACCATGAAAA+GGG | + | chr2_3:27464105-27464124 | Msa0286370:intron | 40.0% | |
ACGAAAATACCACTTGAGAG+GGG | - | chr2_3:27464163-27464182 | None:intergenic | 40.0% | |
CACGAAAATACCACTTGAGA+GGG | - | chr2_3:27464164-27464183 | None:intergenic | 40.0% | |
!! | TTCTAGAATGTGCCTTGTGT+AGG | - | chr2_3:27467804-27467823 | None:intergenic | 40.0% |
TCCTAATGTTCATGCAGGAT+TGG | + | chr2_3:27467946-27467965 | Msa0286370:intron | 40.0% | |
TCCAATCCTGCATGAACATT+AGG | - | chr2_3:27467950-27467969 | None:intergenic | 40.0% | |
ACTTTGCTAATGTACACACG+TGG | + | chr2_3:27468001-27468020 | Msa0286370:CDS | 40.0% | |
CGCAATGTATATGGCTCATT+TGG | - | chr2_3:27468164-27468183 | None:intergenic | 40.0% | |
TTTGTGTAAGTGTACCACGA+TGG | + | chr2_3:27468259-27468278 | Msa0286370:CDS | 40.0% | |
GCGGAACCACATTATGTGTA+CGG | + | chr2_3:27463125-27463144 | Msa0286370:CDS | 45.0% | |
CGGAACCACATTATGTGTAC+GGG | + | chr2_3:27463126-27463145 | Msa0286370:CDS | 45.0% | |
GGAACCACATTATGTGTACG+GGG | + | chr2_3:27463127-27463146 | Msa0286370:CDS | 45.0% | |
TACACCCCGTACACATAATG+TGG | - | chr2_3:27463134-27463153 | None:intergenic | 45.0% | |
ACATTATGTGTACGGGGTGT+AGG | + | chr2_3:27463133-27463152 | Msa0286370:CDS | 45.0% | |
GCTACTCTATGTGTGGTACA+TGG | + | chr2_3:27463480-27463499 | Msa0286370:intron | 45.0% | |
TTTGATTGCACACATGGCCA+TGG | + | chr2_3:27463631-27463650 | Msa0286370:intron | 45.0% | |
AAGGGTCTGTTAAATCCTGG+GGG | - | chr2_3:27463942-27463961 | None:intergenic | 45.0% | |
GAAGGGTCTGTTAAATCCTG+GGG | - | chr2_3:27463943-27463962 | None:intergenic | 45.0% | |
ATTTCTACTCCCCTCTCAAG+TGG | + | chr2_3:27464151-27464170 | Msa0286370:intron | 45.0% | |
GCACGAAAATACCACTTGAG+AGG | - | chr2_3:27464165-27464184 | None:intergenic | 45.0% | |
ACCTATGTGAGTGTCAAGTG+GGG | - | chr2_3:27464759-27464778 | None:intergenic | 45.0% | |
CACCTATGTGAGTGTCAAGT+GGG | - | chr2_3:27464760-27464779 | None:intergenic | 45.0% | |
TCACCTATGTGAGTGTCAAG+TGG | - | chr2_3:27464761-27464780 | None:intergenic | 45.0% | |
TCTCACACACACCATAGGAA+AGG | + | chr2_3:27464884-27464903 | Msa0286370:intron | 45.0% | |
CTCACACACACCATAGGAAA+GGG | + | chr2_3:27464885-27464904 | Msa0286370:intron | 45.0% | |
TTGTTCTCGTCCCTTTCCTA+TGG | - | chr2_3:27464898-27464917 | None:intergenic | 45.0% | |
CATGGGATCACCAATCACAA+AGG | + | chr2_3:27464989-27465008 | Msa0286370:intron | 45.0% | |
GGATCACCAATCACAAAGGT+TGG | + | chr2_3:27464993-27465012 | Msa0286370:intron | 45.0% | |
TTGTGTACATCGAGGGGATT+GGG | - | chr2_3:27465054-27465073 | None:intergenic | 45.0% | |
ATTGTGTACATCGAGGGGAT+TGG | - | chr2_3:27465055-27465074 | None:intergenic | 45.0% | |
GCTACTAAACAAAGCCCCTT+GGG | - | chr2_3:27465087-27465106 | None:intergenic | 45.0% | |
AGCTACTAAACAAAGCCCCT+TGG | - | chr2_3:27465088-27465107 | None:intergenic | 45.0% | |
TATACTATGCAATGTCGCCC+AGG | - | chr2_3:27466567-27466586 | None:intergenic | 45.0% | |
AAGGGTCTGTTAAATCCTGG+GGG | - | chr2_3:27463942-27463961 | None:intergenic | 45.0% | |
GAAGGGTCTGTTAAATCCTG+GGG | - | chr2_3:27463943-27463962 | None:intergenic | 45.0% | |
ATTTCTACTCCCCTCTCAAG+TGG | + | chr2_3:27464151-27464170 | Msa0286370:intron | 45.0% | |
GCACGAAAATACCACTTGAG+AGG | - | chr2_3:27464165-27464184 | None:intergenic | 45.0% | |
TCTGATAGGACACCTACACA+AGG | + | chr2_3:27467789-27467808 | Msa0286370:intron | 45.0% | |
ATATACATTGCGGGAACTGC+CGG | + | chr2_3:27468172-27468191 | Msa0286370:CDS | 45.0% | |
ACAACACTCATGTGTCCTCA+TGG | + | chr2_3:27468195-27468214 | Msa0286370:CDS | 45.0% | |
!!! | AAAATTAATTAACTAATTTT+TGG | + | chr2_3:27464917-27464936 | Msa0286370:intron | 5.0% |
TGCTGATCGCACTGTCCTTA+AGG | + | chr2_3:27463891-27463910 | Msa0286370:intron | 50.0% | |
AAATAATCCAGGCACGCGCA+CGG | - | chr2_3:27464694-27464713 | None:intergenic | 50.0% | |
TGGGATCTTGGCGAAATCTC+TGG | - | chr2_3:27464727-27464746 | None:intergenic | 50.0% | |
TCGCCAAGATCCCATACAAG+CGG | + | chr2_3:27464733-27464752 | Msa0286370:intron | 50.0% | |
GCACTTCTCACACACACCAT+AGG | + | chr2_3:27464879-27464898 | Msa0286370:intron | 50.0% | |
GGGAACCCAACCTTTGTGAT+TGG | - | chr2_3:27465002-27465021 | None:intergenic | 50.0% | |
TGCAGATCGCACTGTCCTTA+AGG | + | chr2_3:27467098-27467117 | Msa0286370:intron | 50.0% | |
GGCAGTTCCCGCAATGTATA+TGG | - | chr2_3:27468173-27468192 | None:intergenic | 50.0% | |
! | GAGGACACATGAGTGTTGTC+CGG | - | chr2_3:27468194-27468213 | None:intergenic | 50.0% |
GCCAACGGCAAGAATTGTGG+GGG | - | chr2_3:27464652-27464671 | None:intergenic | 55.0% | |
CGCCAACGGCAAGAATTGTG+GGG | - | chr2_3:27464653-27464672 | None:intergenic | 55.0% | |
GCGCCAACGGCAAGAATTGT+GGG | - | chr2_3:27464654-27464673 | None:intergenic | 55.0% | |
AGCGCCAACGGCAAGAATTG+TGG | - | chr2_3:27464655-27464674 | None:intergenic | 55.0% | |
AATTCTTGCCGTTGGCGCTG+TGG | + | chr2_3:27464656-27464675 | Msa0286370:intron | 55.0% | |
TCAAGTGGGGCCGCTTGTAT+GGG | - | chr2_3:27464746-27464765 | None:intergenic | 55.0% | |
GCCCCACTTGACACTCACAT+AGG | + | chr2_3:27464755-27464774 | Msa0286370:intron | 55.0% | |
TTGACTGAGGGAGCTCCATG+AGG | - | chr2_3:27468213-27468232 | None:intergenic | 55.0% | |
! | TTGTGGGGGCGTGATGCGAA+TGG | - | chr2_3:27464638-27464657 | None:intergenic | 60.0% |
GCCCCCACAATTCTTGCCGT+TGG | + | chr2_3:27464648-27464667 | Msa0286370:intron | 60.0% | |
GGGCCGCTTGTATGGGATCT+TGG | - | chr2_3:27464739-27464758 | None:intergenic | 60.0% | |
GTCAAGTGGGGCCGCTTGTA+TGG | - | chr2_3:27464747-27464766 | None:intergenic | 60.0% | |
TTCGCGCACCACAGCGCCAA+CGG | - | chr2_3:27464667-27464686 | None:intergenic | 65.0% | |
TGGCGCTGTGGTGCGCGAAT+AGG | + | chr2_3:27464668-27464687 | Msa0286370:intron | 65.0% | |
GAATAGGCCGTGCGCGTGCC+TGG | + | chr2_3:27464684-27464703 | Msa0286370:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 27463094 | 27468305 | 27463094 | ID=Msa0286370;Name=Msa0286370 |
chr2_3 | mRNA | 27463094 | 27468305 | 27463094 | ID=Msa0286370-mRNA-1;Parent=Msa0286370;Name=Msa0286370-mRNA-1;_AED=0.25;_eAED=0.30;_QI=29|0|0|1|0|0|3|0|143 |
chr2_3 | exon | 27463094 | 27463288 | 27463094 | ID=Msa0286370-mRNA-1:exon:9858;Parent=Msa0286370-mRNA-1 |
chr2_3 | exon | 27467963 | 27468073 | 27467963 | ID=Msa0286370-mRNA-1:exon:9859;Parent=Msa0286370-mRNA-1 |
chr2_3 | exon | 27468154 | 27468305 | 27468154 | ID=Msa0286370-mRNA-1:exon:9860;Parent=Msa0286370-mRNA-1 |
chr2_3 | five_prime_UTR | 27463094 | 27463122 | 27463094 | ID=Msa0286370-mRNA-1:five_prime_utr;Parent=Msa0286370-mRNA-1 |
chr2_3 | CDS | 27463123 | 27463288 | 27463123 | ID=Msa0286370-mRNA-1:cds;Parent=Msa0286370-mRNA-1 |
chr2_3 | CDS | 27467963 | 27468073 | 27467963 | ID=Msa0286370-mRNA-1:cds;Parent=Msa0286370-mRNA-1 |
chr2_3 | CDS | 27468154 | 27468305 | 27468154 | ID=Msa0286370-mRNA-1:cds;Parent=Msa0286370-mRNA-1 |
Gene Sequence |
Protein sequence |