Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286390 | XP_013463754.1 | 73.770 | 61 | 15 | 1 | 76 | 136 | 1 | 60 | 1.51e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286390 | A0A072V6U7 | 73.770 | 61 | 15 | 1 | 76 | 136 | 1 | 60 | 7.20e-22 | 95.5 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0286390 | TF | C2C2-LSD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286390 | MtrunA17_Chr2g0303181 | 73.770 | 61 | 15 | 1 | 76 | 136 | 1 | 60 | 1.39e-25 | 95.5 |
| Msa0286390 | MtrunA17_Chr8g0381011 | 64.286 | 42 | 12 | 1 | 76 | 117 | 1 | 39 | 7.36e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATAACAAAGACAGTAAA+AGG | 0.271207 | 2_3:-27483332 | None:intergenic |
| GGAGGAAGAACAGGAATAAC+AGG | 0.354231 | 2_3:-27483299 | None:intergenic |
| TTCACTTTCATTATGGTTAA+CGG | 0.373808 | 2_3:+27483157 | Msa0286390:CDS |
| GTTATTCCTGTTCTTCCTCC+TGG | 0.387766 | 2_3:+27483302 | Msa0286390:CDS |
| TTCATTATGGTTAACGGTGG+TGG | 0.413832 | 2_3:+27483163 | Msa0286390:CDS |
| CGGAGCCACATTATGTGTAC+TGG | 0.429482 | 2_3:+27483206 | Msa0286390:CDS |
| AACTGTAACGGCGACCGTTC+CGG | 0.432529 | 2_3:+27481658 | Msa0286390:CDS |
| AAGATACCAGGAGGAAGAAC+AGG | 0.433787 | 2_3:-27483308 | None:intergenic |
| CAAACATTGCTTGCTCCTCT+AGG | 0.449369 | 2_3:-27483251 | None:intergenic |
| ATTTATGGAACAATCGAAGC+TGG | 0.472181 | 2_3:+27481625 | None:intergenic |
| ACGGTCGCCGTTACAGTTGC+CGG | 0.483983 | 2_3:-27481653 | None:intergenic |
| GACCGTTCCGGCGATAGTCC+CGG | 0.486944 | 2_3:+27481670 | Msa0286390:CDS |
| GCGGTTGCCGTAACAGTCAC+CGG | 0.496614 | 2_3:-27481689 | None:intergenic |
| GATAGTCCCGGTGACTGTTA+CGG | 0.504111 | 2_3:+27481682 | Msa0286390:CDS |
| AAACATTGCTTGCTCCTCTA+GGG | 0.540478 | 2_3:-27483250 | None:intergenic |
| TTAACTCAACACGCTGAGCA+TGG | 0.559546 | 2_3:-27483376 | None:intergenic |
| GGAAACACCGGCAACTGTAA+CGG | 0.561445 | 2_3:+27481646 | Msa0286390:CDS |
| TGTAGCAGATGTCACCTAGT+GGG | 0.573486 | 2_3:+27483096 | Msa0286390:intron |
| ACAGTCACCGGGACTATCGC+CGG | 0.587275 | 2_3:-27481677 | None:intergenic |
| GACTTGCTTCGCCTCTGCTG+CGG | 0.589658 | 2_3:-27481708 | None:intergenic |
| ACAATCGAAGCTGGAAACAC+CGG | 0.593684 | 2_3:+27481634 | Msa0286390:CDS |
| ACATTATGTGTACTGGGTGT+AGG | 0.596546 | 2_3:+27483213 | Msa0286390:CDS |
| CACCGGGACTATCGCCGGAA+CGG | 0.602566 | 2_3:-27481672 | None:intergenic |
| TGTTACGGCAACCGCAGCAG+AGG | 0.603202 | 2_3:+27481697 | Msa0286390:CDS |
| AACATCTTGCTTTACCCTAG+AGG | 0.603716 | 2_3:+27483236 | Msa0286390:CDS |
| GCAGCAGAGGCGAAGCAAGT+CGG | 0.612186 | 2_3:+27481710 | Msa0286390:CDS |
| ACAGTAAAAGGAAAGATACC+AGG | 0.617575 | 2_3:-27483320 | None:intergenic |
| CGGTTGCCGTAACAGTCACC+GGG | 0.627956 | 2_3:-27481688 | None:intergenic |
| ACTTTCATTATGGTTAACGG+TGG | 0.638565 | 2_3:+27483160 | Msa0286390:CDS |
| TACACCCAGTACACATAATG+TGG | 0.639256 | 2_3:-27483211 | None:intergenic |
| GGAGCCACATTATGTGTACT+GGG | 0.663903 | 2_3:+27483207 | Msa0286390:CDS |
| ATGTAGCAGATGTCACCTAG+TGG | 0.671507 | 2_3:+27483095 | Msa0286390:intron |
| GAGGAAGAACAGGAATAACA+GGG | 0.675525 | 2_3:-27483298 | None:intergenic |
| GTAGCAGATGTCACCTAGTG+GGG | 0.686902 | 2_3:+27483097 | Msa0286390:intron |
| GTAAAAGGAAAGATACCAGG+AGG | 0.700150 | 2_3:-27483317 | None:intergenic |
| GCAAGTCGGAGTTGTTACGA+AGG | 0.700941 | 2_3:+27481724 | Msa0286390:CDS |
| AACAAGATCTTATCCCCACT+AGG | 0.705730 | 2_3:-27483110 | None:intergenic |
| AGGAAGAACAGGAATAACAG+GGG | 0.773701 | 2_3:-27483297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAGTTTTATAATTTATC+TGG | + | chr2_3:27481816-27481835 | Msa0286390:intron | 15.0% |
| !!! | AAAGAAAAGTGTATTATATA+CGG | - | chr2_3:27482332-27482351 | None:intergenic | 15.0% |
| !!! | AAAGAGTTTTATAATTTATC+TGG | + | chr2_3:27481816-27481835 | Msa0286390:intron | 15.0% |
| !!! | AAAGAAAAGTGTATTATATA+CGG | - | chr2_3:27482332-27482351 | None:intergenic | 15.0% |
| !! | TAATAAATCCAACTTTGTTA+TGG | + | chr2_3:27481841-27481860 | Msa0286390:intron | 20.0% |
| !! | GTAAATATGAATAAAAGGAA+AGG | - | chr2_3:27482230-27482249 | None:intergenic | 20.0% |
| !! | TGGTTGTAAATATGAATAAA+AGG | - | chr2_3:27482235-27482254 | None:intergenic | 20.0% |
| !!! | TAATACACTTTTCTTTCTTT+CGG | + | chr2_3:27482336-27482355 | Msa0286390:intron | 20.0% |
| !!! | TTTTAATTCTCTCATATCAT+TGG | + | chr2_3:27482436-27482455 | Msa0286390:intron | 20.0% |
| !! | CTTCAAAAAGACTAAAATAA+AGG | - | chr2_3:27482470-27482489 | None:intergenic | 20.0% |
| !!! | TTTAGTCTTTTTGAAGTTTT+AGG | + | chr2_3:27482474-27482493 | Msa0286390:intron | 20.0% |
| !!! | TCTTATTTATAAAAGACAGT+TGG | + | chr2_3:27482711-27482730 | Msa0286390:intron | 20.0% |
| !! | CTTATTTATAAAAGACAGTT+GGG | + | chr2_3:27482712-27482731 | Msa0286390:intron | 20.0% |
| !! | TAATAAATCCAACTTTGTTA+TGG | + | chr2_3:27481841-27481860 | Msa0286390:intron | 20.0% |
| !! | GTAAATATGAATAAAAGGAA+AGG | - | chr2_3:27482230-27482249 | None:intergenic | 20.0% |
| !! | TGGTTGTAAATATGAATAAA+AGG | - | chr2_3:27482235-27482254 | None:intergenic | 20.0% |
| !!! | TAATACACTTTTCTTTCTTT+CGG | + | chr2_3:27482336-27482355 | Msa0286390:intron | 20.0% |
| !!! | TTTTAATTCTCTCATATCAT+TGG | + | chr2_3:27482436-27482455 | Msa0286390:intron | 20.0% |
| !! | CTTCAAAAAGACTAAAATAA+AGG | - | chr2_3:27482470-27482489 | None:intergenic | 20.0% |
| !!! | TTTAGTCTTTTTGAAGTTTT+AGG | + | chr2_3:27482474-27482493 | Msa0286390:intron | 20.0% |
| !!! | TCTTATTTATAAAAGACAGT+TGG | + | chr2_3:27482711-27482730 | Msa0286390:intron | 20.0% |
| !! | CTTATTTATAAAAGACAGTT+GGG | + | chr2_3:27482712-27482731 | Msa0286390:intron | 20.0% |
| !! | AATTAAGTCTCCCATTTTAT+CGG | - | chr2_3:27481788-27481807 | None:intergenic | 25.0% |
| ! | GAAGACAACAATATAAAGAA+TGG | + | chr2_3:27481869-27481888 | Msa0286390:intron | 25.0% |
| ! | CATTTAGACCATGATAAAAT+CGG | + | chr2_3:27481907-27481926 | Msa0286390:intron | 25.0% |
| ! | CCTAAAACTAGTAAAATAAC+CGG | - | chr2_3:27482056-27482075 | None:intergenic | 25.0% |
| !! | AAGAAAACAAGTTTCCTTTT+CGG | + | chr2_3:27482138-27482157 | Msa0286390:intron | 25.0% |
| ! | ACTAATGAATTACGATGATT+TGG | - | chr2_3:27482197-27482216 | None:intergenic | 25.0% |
| !! | AAAAGTGTATTATATACGGT+TGG | - | chr2_3:27482328-27482347 | None:intergenic | 25.0% |
| ! | AGAATTAAAAACCCTAGAAA+TGG | - | chr2_3:27482426-27482445 | None:intergenic | 25.0% |
| ! | GATGAATATATTGAGTTAGA+TGG | + | chr2_3:27482547-27482566 | Msa0286390:intron | 25.0% |
| ! | TTCACTTTCATTATGGTTAA+CGG | + | chr2_3:27483157-27483176 | Msa0286390:CDS | 25.0% |
| !! | TTGATAACAAAGACAGTAAA+AGG | - | chr2_3:27483335-27483354 | None:intergenic | 25.0% |
| !! | AATTAAGTCTCCCATTTTAT+CGG | - | chr2_3:27481788-27481807 | None:intergenic | 25.0% |
| ! | GAAGACAACAATATAAAGAA+TGG | + | chr2_3:27481869-27481888 | Msa0286390:intron | 25.0% |
| ! | CATTTAGACCATGATAAAAT+CGG | + | chr2_3:27481907-27481926 | Msa0286390:intron | 25.0% |
| ! | CCTAAAACTAGTAAAATAAC+CGG | - | chr2_3:27482056-27482075 | None:intergenic | 25.0% |
| !! | AAGAAAACAAGTTTCCTTTT+CGG | + | chr2_3:27482138-27482157 | Msa0286390:intron | 25.0% |
| ! | ACTAATGAATTACGATGATT+TGG | - | chr2_3:27482197-27482216 | None:intergenic | 25.0% |
| !! | AAAAGTGTATTATATACGGT+TGG | - | chr2_3:27482328-27482347 | None:intergenic | 25.0% |
| ! | AGAATTAAAAACCCTAGAAA+TGG | - | chr2_3:27482426-27482445 | None:intergenic | 25.0% |
| ! | GATGAATATATTGAGTTAGA+TGG | + | chr2_3:27482547-27482566 | Msa0286390:intron | 25.0% |
| ! | TTCACTTTCATTATGGTTAA+CGG | + | chr2_3:27483157-27483176 | Msa0286390:CDS | 25.0% |
| !! | TTGATAACAAAGACAGTAAA+AGG | - | chr2_3:27483335-27483354 | None:intergenic | 25.0% |
| ! | ATTTTACACCACCGATAAAA+TGG | + | chr2_3:27481774-27481793 | Msa0286390:intron | 30.0% |
| ! | TTTTACACCACCGATAAAAT+GGG | + | chr2_3:27481775-27481794 | Msa0286390:intron | 30.0% |
| AAATGGGAGACTTAATTACA+AGG | + | chr2_3:27481791-27481810 | Msa0286390:intron | 30.0% | |
| ! | TAAATCCAACTTTGTTATGG+AGG | + | chr2_3:27481844-27481863 | Msa0286390:intron | 30.0% |
| !!! | CCGGTTATTTTACTAGTTTT+AGG | + | chr2_3:27482053-27482072 | Msa0286390:intron | 30.0% |
| AGAAACATAAAGAAAACGCA+CGG | + | chr2_3:27482087-27482106 | Msa0286390:intron | 30.0% | |
| !! | AGGAAACTTGTTTTCTTTGT+CGG | - | chr2_3:27482135-27482154 | None:intergenic | 30.0% |
| TTCTTTCTTTCTCCATTTCT+AGG | + | chr2_3:27482411-27482430 | Msa0286390:intron | 30.0% | |
| TCTTTCTTTCTCCATTTCTA+GGG | + | chr2_3:27482412-27482431 | Msa0286390:intron | 30.0% | |
| ATTCTCTCATATCATTGGTA+TGG | + | chr2_3:27482441-27482460 | Msa0286390:intron | 30.0% | |
| TGTGATTGTTGTAGAAAAGA+TGG | + | chr2_3:27482525-27482544 | Msa0286390:intron | 30.0% | |
| CTTATCTAACTAAATGAGGT+CGG | - | chr2_3:27482631-27482650 | None:intergenic | 30.0% | |
| ! | AAGCCTTATCTAACTAAATG+AGG | - | chr2_3:27482635-27482654 | None:intergenic | 30.0% |
| TCATTTAGTTAGATAAGGCT+TGG | + | chr2_3:27482634-27482653 | Msa0286390:intron | 30.0% | |
| TCAACAAAAATTGACGTATC+TGG | - | chr2_3:27482762-27482781 | None:intergenic | 30.0% | |
| CCTATCCATAAGAGATATTT+GGG | - | chr2_3:27482785-27482804 | None:intergenic | 30.0% | |
| TCCTATCCATAAGAGATATT+TGG | - | chr2_3:27482786-27482805 | None:intergenic | 30.0% | |
| AAGATGTACAATAACCAAGA+CGG | - | chr2_3:27482878-27482897 | None:intergenic | 30.0% | |
| CAAGTCTTAGACTAATTTAG+TGG | - | chr2_3:27482936-27482955 | None:intergenic | 30.0% | |
| ! | TTAGTCTAAGACTTGATATG+TGG | + | chr2_3:27482941-27482960 | Msa0286390:intron | 30.0% |
| ! | GTTTTGCTTCACTTTCATTA+TGG | + | chr2_3:27483150-27483169 | Msa0286390:CDS | 30.0% |
| !! | TGTTTAACTTTTCAGCTATG+CGG | + | chr2_3:27483186-27483205 | Msa0286390:CDS | 30.0% |
| ! | ATTTTACACCACCGATAAAA+TGG | + | chr2_3:27481774-27481793 | Msa0286390:intron | 30.0% |
| ! | TTTTACACCACCGATAAAAT+GGG | + | chr2_3:27481775-27481794 | Msa0286390:intron | 30.0% |
| AAATGGGAGACTTAATTACA+AGG | + | chr2_3:27481791-27481810 | Msa0286390:intron | 30.0% | |
| ! | TAAATCCAACTTTGTTATGG+AGG | + | chr2_3:27481844-27481863 | Msa0286390:intron | 30.0% |
| !!! | CCGGTTATTTTACTAGTTTT+AGG | + | chr2_3:27482053-27482072 | Msa0286390:intron | 30.0% |
| AGAAACATAAAGAAAACGCA+CGG | + | chr2_3:27482087-27482106 | Msa0286390:intron | 30.0% | |
| !! | AGGAAACTTGTTTTCTTTGT+CGG | - | chr2_3:27482135-27482154 | None:intergenic | 30.0% |
| TTCTTTCTTTCTCCATTTCT+AGG | + | chr2_3:27482411-27482430 | Msa0286390:intron | 30.0% | |
| TCTTTCTTTCTCCATTTCTA+GGG | + | chr2_3:27482412-27482431 | Msa0286390:intron | 30.0% | |
| ATTCTCTCATATCATTGGTA+TGG | + | chr2_3:27482441-27482460 | Msa0286390:intron | 30.0% | |
| TGTGATTGTTGTAGAAAAGA+TGG | + | chr2_3:27482525-27482544 | Msa0286390:intron | 30.0% | |
| CTTATCTAACTAAATGAGGT+CGG | - | chr2_3:27482631-27482650 | None:intergenic | 30.0% | |
| ! | AAGCCTTATCTAACTAAATG+AGG | - | chr2_3:27482635-27482654 | None:intergenic | 30.0% |
| TCATTTAGTTAGATAAGGCT+TGG | + | chr2_3:27482634-27482653 | Msa0286390:intron | 30.0% | |
| TCAACAAAAATTGACGTATC+TGG | - | chr2_3:27482762-27482781 | None:intergenic | 30.0% | |
| CCTATCCATAAGAGATATTT+GGG | - | chr2_3:27482785-27482804 | None:intergenic | 30.0% | |
| TCCTATCCATAAGAGATATT+TGG | - | chr2_3:27482786-27482805 | None:intergenic | 30.0% | |
| AAGATGTACAATAACCAAGA+CGG | - | chr2_3:27482878-27482897 | None:intergenic | 30.0% | |
| CAAGTCTTAGACTAATTTAG+TGG | - | chr2_3:27482936-27482955 | None:intergenic | 30.0% | |
| ! | TTAGTCTAAGACTTGATATG+TGG | + | chr2_3:27482941-27482960 | Msa0286390:intron | 30.0% |
| ! | GTTTTGCTTCACTTTCATTA+TGG | + | chr2_3:27483150-27483169 | Msa0286390:CDS | 30.0% |
| !! | TGTTTAACTTTTCAGCTATG+CGG | + | chr2_3:27483186-27483205 | Msa0286390:CDS | 30.0% |
| TGTACACCATTAGATCAATG+AGG | - | chr2_3:27481937-27481956 | None:intergenic | 35.0% | |
| TAAAATAACCGGAGTAAGCA+TGG | - | chr2_3:27482045-27482064 | None:intergenic | 35.0% | |
| !! | GGAAACTTGTTTTCTTTGTC+GGG | - | chr2_3:27482134-27482153 | None:intergenic | 35.0% |
| TTCGATGAATTGCGATGATT+TGG | - | chr2_3:27482255-27482274 | None:intergenic | 35.0% | |
| CGTTTGATTGATTGAGGAAT+GGG | - | chr2_3:27482303-27482322 | None:intergenic | 35.0% | |
| AAAGAAAGAATACCTGAGTG+GGG | - | chr2_3:27482401-27482420 | None:intergenic | 35.0% | |
| GAAAGAAAGAATACCTGAGT+GGG | - | chr2_3:27482402-27482421 | None:intergenic | 35.0% | |
| AGAAAGAAAGAATACCTGAG+TGG | - | chr2_3:27482403-27482422 | None:intergenic | 35.0% | |
| CGACCTCATTTAGTTAGATA+AGG | + | chr2_3:27482629-27482648 | Msa0286390:intron | 35.0% | |
| !! | CAATAGTTTGACTTGAGACA+TGG | + | chr2_3:27482676-27482695 | Msa0286390:intron | 35.0% |
| ! | GACGTATCTGGTTCAAAATT+TGG | - | chr2_3:27482750-27482769 | None:intergenic | 35.0% |
| GTTGACCCAAATATCTCTTA+TGG | + | chr2_3:27482777-27482796 | Msa0286390:intron | 35.0% | |
| CCCAAATATCTCTTATGGAT+AGG | + | chr2_3:27482782-27482801 | Msa0286390:intron | 35.0% | |
| TCTCTTATGGATAGGATTGA+CGG | + | chr2_3:27482790-27482809 | Msa0286390:intron | 35.0% | |
| !! | ACATCAATGCTTTTTACGTG+TGG | + | chr2_3:27483007-27483026 | Msa0286390:intron | 35.0% |
| ACTTTCATTATGGTTAACGG+TGG | + | chr2_3:27483160-27483179 | Msa0286390:CDS | 35.0% | |
| ACAGTAAAAGGAAAGATACC+AGG | - | chr2_3:27483323-27483342 | None:intergenic | 35.0% | |
| TGTACACCATTAGATCAATG+AGG | - | chr2_3:27481937-27481956 | None:intergenic | 35.0% | |
| TAAAATAACCGGAGTAAGCA+TGG | - | chr2_3:27482045-27482064 | None:intergenic | 35.0% | |
| !! | GGAAACTTGTTTTCTTTGTC+GGG | - | chr2_3:27482134-27482153 | None:intergenic | 35.0% |
| TTCGATGAATTGCGATGATT+TGG | - | chr2_3:27482255-27482274 | None:intergenic | 35.0% | |
| CGTTTGATTGATTGAGGAAT+GGG | - | chr2_3:27482303-27482322 | None:intergenic | 35.0% | |
| AAAGAAAGAATACCTGAGTG+GGG | - | chr2_3:27482401-27482420 | None:intergenic | 35.0% | |
| GAAAGAAAGAATACCTGAGT+GGG | - | chr2_3:27482402-27482421 | None:intergenic | 35.0% | |
| AGAAAGAAAGAATACCTGAG+TGG | - | chr2_3:27482403-27482422 | None:intergenic | 35.0% | |
| CGACCTCATTTAGTTAGATA+AGG | + | chr2_3:27482629-27482648 | Msa0286390:intron | 35.0% | |
| !! | CAATAGTTTGACTTGAGACA+TGG | + | chr2_3:27482676-27482695 | Msa0286390:intron | 35.0% |
| ! | GACGTATCTGGTTCAAAATT+TGG | - | chr2_3:27482750-27482769 | None:intergenic | 35.0% |
| GTTGACCCAAATATCTCTTA+TGG | + | chr2_3:27482777-27482796 | Msa0286390:intron | 35.0% | |
| CCCAAATATCTCTTATGGAT+AGG | + | chr2_3:27482782-27482801 | Msa0286390:intron | 35.0% | |
| TCTCTTATGGATAGGATTGA+CGG | + | chr2_3:27482790-27482809 | Msa0286390:intron | 35.0% | |
| !! | ACATCAATGCTTTTTACGTG+TGG | + | chr2_3:27483007-27483026 | Msa0286390:intron | 35.0% |
| ACTTTCATTATGGTTAACGG+TGG | + | chr2_3:27483160-27483179 | Msa0286390:CDS | 35.0% | |
| ACAGTAAAAGGAAAGATACC+AGG | - | chr2_3:27483323-27483342 | None:intergenic | 35.0% | |
| ! | TAAGTCTCCCATTTTATCGG+TGG | - | chr2_3:27481785-27481804 | None:intergenic | 40.0% |
| TTCAGCCTCCATAACAAAGT+TGG | - | chr2_3:27481852-27481871 | None:intergenic | 40.0% | |
| !!! | GAGGAGTACCGATTTTATCA+TGG | - | chr2_3:27481918-27481937 | None:intergenic | 40.0% |
| GGTACTCCTCATTGATCTAA+TGG | + | chr2_3:27481928-27481947 | Msa0286390:intron | 40.0% | |
| AGTAAGCATGGAATGACTTC+GGG | - | chr2_3:27482033-27482052 | None:intergenic | 40.0% | |
| GAGTAAGCATGGAATGACTT+CGG | - | chr2_3:27482034-27482053 | None:intergenic | 40.0% | |
| AAGTCATTCCATGCTTACTC+CGG | + | chr2_3:27482034-27482053 | Msa0286390:intron | 40.0% | |
| TCAATGTTAGCACACCGAAA+AGG | - | chr2_3:27482155-27482174 | None:intergenic | 40.0% | |
| GCGTTTGATTGATTGAGGAA+TGG | - | chr2_3:27482304-27482323 | None:intergenic | 40.0% | |
| TTGGTGCGTTTGATTGATTG+AGG | - | chr2_3:27482309-27482328 | None:intergenic | 40.0% | |
| GCAGAAGAAAGAAAGTTGTG+CGG | - | chr2_3:27482367-27482386 | None:intergenic | 40.0% | |
| AAGACAGTTGGGTCAACAAA+AGG | + | chr2_3:27482723-27482742 | Msa0286390:intron | 40.0% | |
| CTCTTATGGATAGGATTGAC+GGG | + | chr2_3:27482791-27482810 | Msa0286390:intron | 40.0% | |
| AACAAGATCTTATCCCCACT+AGG | - | chr2_3:27483113-27483132 | None:intergenic | 40.0% | |
| TTCATTATGGTTAACGGTGG+TGG | + | chr2_3:27483163-27483182 | Msa0286390:CDS | 40.0% | |
| TACACCCAGTACACATAATG+TGG | - | chr2_3:27483214-27483233 | None:intergenic | 40.0% | |
| ACATTATGTGTACTGGGTGT+AGG | + | chr2_3:27483213-27483232 | Msa0286390:CDS | 40.0% | |
| AACATCTTGCTTTACCCTAG+AGG | + | chr2_3:27483236-27483255 | Msa0286390:CDS | 40.0% | |
| AAACATTGCTTGCTCCTCTA+GGG | - | chr2_3:27483253-27483272 | None:intergenic | 40.0% | |
| AGGAAGAACAGGAATAACAG+GGG | - | chr2_3:27483300-27483319 | None:intergenic | 40.0% | |
| GAGGAAGAACAGGAATAACA+GGG | - | chr2_3:27483301-27483320 | None:intergenic | 40.0% | |
| GTAAAAGGAAAGATACCAGG+AGG | - | chr2_3:27483320-27483339 | None:intergenic | 40.0% | |
| ! | TAAGTCTCCCATTTTATCGG+TGG | - | chr2_3:27481785-27481804 | None:intergenic | 40.0% |
| TTCAGCCTCCATAACAAAGT+TGG | - | chr2_3:27481852-27481871 | None:intergenic | 40.0% | |
| !!! | GAGGAGTACCGATTTTATCA+TGG | - | chr2_3:27481918-27481937 | None:intergenic | 40.0% |
| GGTACTCCTCATTGATCTAA+TGG | + | chr2_3:27481928-27481947 | Msa0286390:intron | 40.0% | |
| AGTAAGCATGGAATGACTTC+GGG | - | chr2_3:27482033-27482052 | None:intergenic | 40.0% | |
| GAGTAAGCATGGAATGACTT+CGG | - | chr2_3:27482034-27482053 | None:intergenic | 40.0% | |
| AAGTCATTCCATGCTTACTC+CGG | + | chr2_3:27482034-27482053 | Msa0286390:intron | 40.0% | |
| TCAATGTTAGCACACCGAAA+AGG | - | chr2_3:27482155-27482174 | None:intergenic | 40.0% | |
| GCGTTTGATTGATTGAGGAA+TGG | - | chr2_3:27482304-27482323 | None:intergenic | 40.0% | |
| TTGGTGCGTTTGATTGATTG+AGG | - | chr2_3:27482309-27482328 | None:intergenic | 40.0% | |
| GCAGAAGAAAGAAAGTTGTG+CGG | - | chr2_3:27482367-27482386 | None:intergenic | 40.0% | |
| AAGACAGTTGGGTCAACAAA+AGG | + | chr2_3:27482723-27482742 | Msa0286390:intron | 40.0% | |
| CTCTTATGGATAGGATTGAC+GGG | + | chr2_3:27482791-27482810 | Msa0286390:intron | 40.0% | |
| AACAAGATCTTATCCCCACT+AGG | - | chr2_3:27483113-27483132 | None:intergenic | 40.0% | |
| TTCATTATGGTTAACGGTGG+TGG | + | chr2_3:27483163-27483182 | Msa0286390:CDS | 40.0% | |
| TACACCCAGTACACATAATG+TGG | - | chr2_3:27483214-27483233 | None:intergenic | 40.0% | |
| ACATTATGTGTACTGGGTGT+AGG | + | chr2_3:27483213-27483232 | Msa0286390:CDS | 40.0% | |
| AACATCTTGCTTTACCCTAG+AGG | + | chr2_3:27483236-27483255 | Msa0286390:CDS | 40.0% | |
| AAACATTGCTTGCTCCTCTA+GGG | - | chr2_3:27483253-27483272 | None:intergenic | 40.0% | |
| AGGAAGAACAGGAATAACAG+GGG | - | chr2_3:27483300-27483319 | None:intergenic | 40.0% | |
| GAGGAAGAACAGGAATAACA+GGG | - | chr2_3:27483301-27483320 | None:intergenic | 40.0% | |
| GTAAAAGGAAAGATACCAGG+AGG | - | chr2_3:27483320-27483339 | None:intergenic | 40.0% | |
| ACAATCGAAGCTGGAAACAC+CGG | + | chr2_3:27481634-27481653 | Msa0286390:CDS | 45.0% | |
| TAAGCATGGAATGACTTCGG+GGG | - | chr2_3:27482031-27482050 | None:intergenic | 45.0% | |
| GTAAGCATGGAATGACTTCG+GGG | - | chr2_3:27482032-27482051 | None:intergenic | 45.0% | |
| CGGTGAAGAAGTTTCCTGAT+CGG | + | chr2_3:27482107-27482126 | Msa0286390:intron | 45.0% | |
| AAGACTTGATATGTGGCACG+TGG | + | chr2_3:27482948-27482967 | Msa0286390:intron | 45.0% | |
| !! | TGCTTTTTACGTGTGGCTCA+AGG | + | chr2_3:27483014-27483033 | Msa0286390:intron | 45.0% |
| ATGTAGCAGATGTCACCTAG+TGG | + | chr2_3:27483095-27483114 | Msa0286390:intron | 45.0% | |
| TGTAGCAGATGTCACCTAGT+GGG | + | chr2_3:27483096-27483115 | Msa0286390:intron | 45.0% | |
| GGAGCCACATTATGTGTACT+GGG | + | chr2_3:27483207-27483226 | Msa0286390:CDS | 45.0% | |
| CAAACATTGCTTGCTCCTCT+AGG | - | chr2_3:27483254-27483273 | None:intergenic | 45.0% | |
| GGAGGAAGAACAGGAATAAC+AGG | - | chr2_3:27483302-27483321 | None:intergenic | 45.0% | |
| GTTATTCCTGTTCTTCCTCC+TGG | + | chr2_3:27483302-27483321 | Msa0286390:CDS | 45.0% | |
| AAGATACCAGGAGGAAGAAC+AGG | - | chr2_3:27483311-27483330 | None:intergenic | 45.0% | |
| TTAACTCAACACGCTGAGCA+TGG | - | chr2_3:27483379-27483398 | None:intergenic | 45.0% | |
| ACAATCGAAGCTGGAAACAC+CGG | + | chr2_3:27481634-27481653 | Msa0286390:CDS | 45.0% | |
| TAAGCATGGAATGACTTCGG+GGG | - | chr2_3:27482031-27482050 | None:intergenic | 45.0% | |
| GTAAGCATGGAATGACTTCG+GGG | - | chr2_3:27482032-27482051 | None:intergenic | 45.0% | |
| CGGTGAAGAAGTTTCCTGAT+CGG | + | chr2_3:27482107-27482126 | Msa0286390:intron | 45.0% | |
| AAGACTTGATATGTGGCACG+TGG | + | chr2_3:27482948-27482967 | Msa0286390:intron | 45.0% | |
| !! | TGCTTTTTACGTGTGGCTCA+AGG | + | chr2_3:27483014-27483033 | Msa0286390:intron | 45.0% |
| ATGTAGCAGATGTCACCTAG+TGG | + | chr2_3:27483095-27483114 | Msa0286390:intron | 45.0% | |
| TGTAGCAGATGTCACCTAGT+GGG | + | chr2_3:27483096-27483115 | Msa0286390:intron | 45.0% | |
| GGAGCCACATTATGTGTACT+GGG | + | chr2_3:27483207-27483226 | Msa0286390:CDS | 45.0% | |
| CAAACATTGCTTGCTCCTCT+AGG | - | chr2_3:27483254-27483273 | None:intergenic | 45.0% | |
| GGAGGAAGAACAGGAATAAC+AGG | - | chr2_3:27483302-27483321 | None:intergenic | 45.0% | |
| GTTATTCCTGTTCTTCCTCC+TGG | + | chr2_3:27483302-27483321 | Msa0286390:CDS | 45.0% | |
| AAGATACCAGGAGGAAGAAC+AGG | - | chr2_3:27483311-27483330 | None:intergenic | 45.0% | |
| TTAACTCAACACGCTGAGCA+TGG | - | chr2_3:27483379-27483398 | None:intergenic | 45.0% | |
| GGAAACACCGGCAACTGTAA+CGG | + | chr2_3:27481646-27481665 | Msa0286390:CDS | 50.0% | |
| GATAGTCCCGGTGACTGTTA+CGG | + | chr2_3:27481682-27481701 | Msa0286390:CDS | 50.0% | |
| GCAAGTCGGAGTTGTTACGA+AGG | + | chr2_3:27481724-27481743 | Msa0286390:CDS | 50.0% | |
| TTTCTTTGTCGGGACCGATC+AGG | - | chr2_3:27482124-27482143 | None:intergenic | 50.0% | |
| ! | CGTTTTCTCAATCCCCACTC+AGG | + | chr2_3:27482386-27482405 | Msa0286390:intron | 50.0% |
| ! | ATGTAGCTGATTCCACCGAG+TGG | + | chr2_3:27482849-27482868 | Msa0286390:intron | 50.0% |
| ! | TGTAGCTGATTCCACCGAGT+GGG | + | chr2_3:27482850-27482869 | Msa0286390:intron | 50.0% |
| TAACCAAGACGGATCCCACT+CGG | - | chr2_3:27482867-27482886 | None:intergenic | 50.0% | |
| TTACGTGTGGCTCAAGGCAA+CGG | + | chr2_3:27483020-27483039 | Msa0286390:intron | 50.0% | |
| AAGGCAACGGTTAACACGTG+CGG | + | chr2_3:27483033-27483052 | Msa0286390:intron | 50.0% | |
| GTAGCAGATGTCACCTAGTG+GGG | + | chr2_3:27483097-27483116 | Msa0286390:intron | 50.0% | |
| CGGAGCCACATTATGTGTAC+TGG | + | chr2_3:27483206-27483225 | Msa0286390:CDS | 50.0% | |
| GGAAACACCGGCAACTGTAA+CGG | + | chr2_3:27481646-27481665 | Msa0286390:CDS | 50.0% | |
| GATAGTCCCGGTGACTGTTA+CGG | + | chr2_3:27481682-27481701 | Msa0286390:CDS | 50.0% | |
| GCAAGTCGGAGTTGTTACGA+AGG | + | chr2_3:27481724-27481743 | Msa0286390:CDS | 50.0% | |
| TTTCTTTGTCGGGACCGATC+AGG | - | chr2_3:27482124-27482143 | None:intergenic | 50.0% | |
| ! | CGTTTTCTCAATCCCCACTC+AGG | + | chr2_3:27482386-27482405 | Msa0286390:intron | 50.0% |
| ! | ATGTAGCTGATTCCACCGAG+TGG | + | chr2_3:27482849-27482868 | Msa0286390:intron | 50.0% |
| ! | TGTAGCTGATTCCACCGAGT+GGG | + | chr2_3:27482850-27482869 | Msa0286390:intron | 50.0% |
| TAACCAAGACGGATCCCACT+CGG | - | chr2_3:27482867-27482886 | None:intergenic | 50.0% | |
| TTACGTGTGGCTCAAGGCAA+CGG | + | chr2_3:27483020-27483039 | Msa0286390:intron | 50.0% | |
| AAGGCAACGGTTAACACGTG+CGG | + | chr2_3:27483033-27483052 | Msa0286390:intron | 50.0% | |
| GTAGCAGATGTCACCTAGTG+GGG | + | chr2_3:27483097-27483116 | Msa0286390:intron | 50.0% | |
| CGGAGCCACATTATGTGTAC+TGG | + | chr2_3:27483206-27483225 | Msa0286390:CDS | 50.0% | |
| AACTGTAACGGCGACCGTTC+CGG | + | chr2_3:27481658-27481677 | Msa0286390:CDS | 55.0% | |
| GATATGTGGCACGTGGATCG+TGG | + | chr2_3:27482955-27482974 | Msa0286390:intron | 55.0% | |
| AACTGTAACGGCGACCGTTC+CGG | + | chr2_3:27481658-27481677 | Msa0286390:CDS | 55.0% | |
| GATATGTGGCACGTGGATCG+TGG | + | chr2_3:27482955-27482974 | Msa0286390:intron | 55.0% | |
| ACGGTCGCCGTTACAGTTGC+CGG | - | chr2_3:27481656-27481675 | None:intergenic | 60.0% | |
| ACAGTCACCGGGACTATCGC+CGG | - | chr2_3:27481680-27481699 | None:intergenic | 60.0% | |
| CGGTTGCCGTAACAGTCACC+GGG | - | chr2_3:27481691-27481710 | None:intergenic | 60.0% | |
| GCGGTTGCCGTAACAGTCAC+CGG | - | chr2_3:27481692-27481711 | None:intergenic | 60.0% | |
| TGTTACGGCAACCGCAGCAG+AGG | + | chr2_3:27481697-27481716 | Msa0286390:CDS | 60.0% | |
| ! | GACTTGCTTCGCCTCTGCTG+CGG | - | chr2_3:27481711-27481730 | None:intergenic | 60.0% |
| GCAGCAGAGGCGAAGCAAGT+CGG | + | chr2_3:27481710-27481729 | Msa0286390:CDS | 60.0% | |
| GCATGGAATGACTTCGGGGG+TGG | - | chr2_3:27482028-27482047 | None:intergenic | 60.0% | |
| ATGTGGCACGTGGATCGTGG+TGG | + | chr2_3:27482958-27482977 | Msa0286390:intron | 60.0% | |
| ACGGTCGCCGTTACAGTTGC+CGG | - | chr2_3:27481656-27481675 | None:intergenic | 60.0% | |
| ACAGTCACCGGGACTATCGC+CGG | - | chr2_3:27481680-27481699 | None:intergenic | 60.0% | |
| CGGTTGCCGTAACAGTCACC+GGG | - | chr2_3:27481691-27481710 | None:intergenic | 60.0% | |
| GCGGTTGCCGTAACAGTCAC+CGG | - | chr2_3:27481692-27481711 | None:intergenic | 60.0% | |
| TGTTACGGCAACCGCAGCAG+AGG | + | chr2_3:27481697-27481716 | Msa0286390:CDS | 60.0% | |
| ! | GACTTGCTTCGCCTCTGCTG+CGG | - | chr2_3:27481711-27481730 | None:intergenic | 60.0% |
| GCAGCAGAGGCGAAGCAAGT+CGG | + | chr2_3:27481710-27481729 | Msa0286390:CDS | 60.0% | |
| GCATGGAATGACTTCGGGGG+TGG | - | chr2_3:27482028-27482047 | None:intergenic | 60.0% | |
| ATGTGGCACGTGGATCGTGG+TGG | + | chr2_3:27482958-27482977 | Msa0286390:intron | 60.0% | |
| GACCGTTCCGGCGATAGTCC+CGG | + | chr2_3:27481670-27481689 | Msa0286390:CDS | 65.0% | |
| CACCGGGACTATCGCCGGAA+CGG | - | chr2_3:27481675-27481694 | None:intergenic | 65.0% | |
| CCAAGACGGATCCCACTCGG+TGG | - | chr2_3:27482864-27482883 | None:intergenic | 65.0% | |
| CCACCGAGTGGGATCCGTCT+TGG | + | chr2_3:27482861-27482880 | Msa0286390:intron | 65.0% | |
| TGGCACGTGGATCGTGGTGG+TGG | + | chr2_3:27482961-27482980 | Msa0286390:intron | 65.0% | |
| GACCGTTCCGGCGATAGTCC+CGG | + | chr2_3:27481670-27481689 | Msa0286390:CDS | 65.0% | |
| CACCGGGACTATCGCCGGAA+CGG | - | chr2_3:27481675-27481694 | None:intergenic | 65.0% | |
| CCAAGACGGATCCCACTCGG+TGG | - | chr2_3:27482864-27482883 | None:intergenic | 65.0% | |
| CCACCGAGTGGGATCCGTCT+TGG | + | chr2_3:27482861-27482880 | Msa0286390:intron | 65.0% | |
| TGGCACGTGGATCGTGGTGG+TGG | + | chr2_3:27482961-27482980 | Msa0286390:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 27481629 | 27483403 | 27481629 | ID=Msa0286390;Name=Msa0286390 |
| chr2_3 | mRNA | 27481629 | 27483403 | 27481629 | ID=Msa0286390-mRNA-1;Parent=Msa0286390;Name=Msa0286390-mRNA-1;_AED=0.72;_eAED=0.73;_QI=0|0|0|0.5|1|1|2|0|141 |
| chr2_3 | exon | 27481629 | 27481751 | 27481629 | ID=Msa0286390-mRNA-1:exon:9836;Parent=Msa0286390-mRNA-1 |
| chr2_3 | exon | 27483101 | 27483403 | 27483101 | ID=Msa0286390-mRNA-1:exon:9837;Parent=Msa0286390-mRNA-1 |
| chr2_3 | CDS | 27481629 | 27481751 | 27481629 | ID=Msa0286390-mRNA-1:cds;Parent=Msa0286390-mRNA-1 |
| chr2_3 | CDS | 27483101 | 27483403 | 27483101 | ID=Msa0286390-mRNA-1:cds;Parent=Msa0286390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
