AlfalfaGEDB | Msa0286390

M. sativa cultivar zhongmu-4 / Msa0286390

KEGG: -
GO: GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007
PFAM: PF06943.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286390	XP_013463754.1	73.770	61	15	1	76	136	1	60	1.51e-21	95.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286390	A0A072V6U7	73.770	61	15	1	76	136	1	60	7.20e-22	95.5

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TFs/TRs:

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Gene ID	Type	Classification
Msa0286390	TF	C2C2-LSD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0286390	MtrunA17_Chr2g0303181	73.770	61	15	1	76	136	1	60	1.39e-25	95.5
Msa0286390	MtrunA17_Chr8g0381011	64.286	42	12	1	76	117	1	39	7.36e-12	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 38 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGCTTGCTCCTCTA+GGG	0.540478	2_3:-27483250	None:intergenic
AACAAGATCTTATCCCCACT+AGG	0.705730	2_3:-27483110	None:intergenic
AACATCTTGCTTTACCCTAG+AGG	0.603716	2_3:+27483236	Msa0286390:CDS
AACTGTAACGGCGACCGTTC+CGG	0.432529	2_3:+27481658	Msa0286390:CDS
AAGATACCAGGAGGAAGAAC+AGG	0.433787	2_3:-27483308	None:intergenic
ACAATCGAAGCTGGAAACAC+CGG	0.593684	2_3:+27481634	Msa0286390:CDS
ACAGTAAAAGGAAAGATACC+AGG	0.617575	2_3:-27483320	None:intergenic
ACAGTCACCGGGACTATCGC+CGG	0.587275	2_3:-27481677	None:intergenic
ACATTATGTGTACTGGGTGT+AGG	0.596546	2_3:+27483213	Msa0286390:CDS
ACGGTCGCCGTTACAGTTGC+CGG	0.483983	2_3:-27481653	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGGAGACTTAATTACA+AGG	+	chr2_3:27481791-27481810	Msa0286390:intron	30.0%
AGAAACATAAAGAAAACGCA+CGG	+	chr2_3:27482087-27482106	Msa0286390:intron	30.0%
TTCTTTCTTTCTCCATTTCT+AGG	+	chr2_3:27482411-27482430	Msa0286390:intron	30.0%
TCTTTCTTTCTCCATTTCTA+GGG	+	chr2_3:27482412-27482431	Msa0286390:intron	30.0%
ATTCTCTCATATCATTGGTA+TGG	+	chr2_3:27482441-27482460	Msa0286390:intron	30.0%
TGTGATTGTTGTAGAAAAGA+TGG	+	chr2_3:27482525-27482544	Msa0286390:intron	30.0%
CTTATCTAACTAAATGAGGT+CGG	-	chr2_3:27482631-27482650	None:intergenic	30.0%
TCATTTAGTTAGATAAGGCT+TGG	+	chr2_3:27482634-27482653	Msa0286390:intron	30.0%
TCAACAAAAATTGACGTATC+TGG	-	chr2_3:27482762-27482781	None:intergenic	30.0%
CCTATCCATAAGAGATATTT+GGG	-	chr2_3:27482785-27482804	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	27481629	27483403	27481629	ID=Msa0286390;Name=Msa0286390
chr2_3	mRNA	27481629	27483403	27481629	ID=Msa0286390-mRNA-1;Parent=Msa0286390;Name=Msa0286390-mRNA-1;_AED=0.72;_eAED=0.73;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|141
chr2_3	exon	27481629	27481751	27481629	ID=Msa0286390-mRNA-1:exon:9836;Parent=Msa0286390-mRNA-1
chr2_3	exon	27483101	27483403	27483101	ID=Msa0286390-mRNA-1:exon:9837;Parent=Msa0286390-mRNA-1
chr2_3	CDS	27481629	27481751	27481629	ID=Msa0286390-mRNA-1:cds;Parent=Msa0286390-mRNA-1
chr2_3	CDS	27483101	27483403	27483101	ID=Msa0286390-mRNA-1:cds;Parent=Msa0286390-mRNA-1

Gene Sequence

>Msa0286390

ATGGAACAATCGAAGCTGGAAACACCGGCAACTGTAACGGCGACCGTTCCGGCGATAGTCCCGGTGACTGTTACGGCAACCGCAGCAGAGGCGAAGCAAGTCGGAGTTGTTACGAAGGAATTTCAGATGTCACCTAGTGGGGATAAGATCTTGTTACAAATTTTCGTTTCATGTTTTGCTTCACTTTCATTATGGTTAACGGTGGTGGTGTTTAACTTTTCAGCTATGCGGAGCCACATTATGTGTACTGGGTGTAGGAACATCTTGCTTTACCCTAGAGGAGCAAGCAATGTTTGCTGTGCAGTGTGCAGCACAATTACCCCTGTTATTCCTGTTCTTCCTCCTGGTATCTTTCCTTTTACTGTCTTTGTTATCAAGATTTCAAGAATTTTCTTGCTCCATGCTCAGCGTGTTGAGTTAATTTGA

Protein sequence

>Msa0286390

MEQSKLETPATVTATVPAIVPVTVTATAAEAKQVGVVTKEFQMSPSGDKILLQIFVSCFASLSLWLTVVVFNFSAMRSHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGIFPFTVFVIKISRIFLLHAQRVELI*