AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288990 MtrunA17_Chr2g0308321 95.185 540 25 1 1 540 1 539 0.0 957
Msa0288990 MtrunA17_Chr4g0061651 61.616 495 150 12 51 540 11 470 0.0 525
Msa0288990 MtrunA17_Chr5g0420051 39.837 369 191 11 1 353 1 354 8.22e-64 214
Msa0288990 MtrunA17_Chr3g0132091 34.204 383 178 15 123 490 18 341 8.11e-40 148
Msa0288990 MtrunA17_Chr8g0386271 57.692 130 50 2 123 247 45 174 4.36e-37 141
Msa0288990 MtrunA17_Chr7g0224821 53.077 130 59 1 167 294 72 201 1.05e-35 137
Msa0288990 MtrunA17_Chr7g0258471 58.929 112 44 2 163 272 133 244 8.56e-34 132
Msa0288990 MtrunA17_Chr7g0231911 60.377 106 36 2 166 265 143 248 9.98e-34 130
Msa0288990 MtrunA17_Chr1g0162871 62.376 101 37 1 148 247 79 179 3.58e-33 135
Msa0288990 MtrunA17_Chr8g0334671 72.368 76 21 0 172 247 187 262 8.91e-33 127
Msa0288990 MtrunA17_Chr7g0270541 51.613 124 58 2 122 245 97 218 1.59e-32 132
Msa0288990 MtrunA17_Chr2g0302791 66.279 86 27 1 170 253 137 222 1.88e-31 129
Msa0288990 MtrunA17_Chr2g0282521 67.500 80 26 0 172 251 64 143 2.62e-31 118
Msa0288990 MtrunA17_Chr3g0122411 46.528 144 69 2 107 247 102 240 3.96e-31 125
Msa0288990 MtrunA17_Chr4g0046991 67.532 77 25 0 172 248 73 149 4.40e-31 118
Msa0288990 MtrunA17_Chr1g0194121 57.009 107 41 1 144 245 114 220 6.54e-31 128
Msa0288990 MtrunA17_Chr8g0360361 68.919 74 23 0 172 245 65 138 1.84e-29 114
Msa0288990 MtrunA17_Chr8g0377421 58.667 75 31 0 171 245 131 205 3.85e-25 105
Msa0288990 MtrunA17_Chr8g0377401 58.904 73 30 0 172 244 162 234 3.41e-23 99.0
Msa0288990 MtrunA17_Chr2g0286661 46.237 93 50 0 156 248 87 179 3.95e-21 97.4
Msa0288990 MtrunA17_Chr1g0175031 68.085 47 15 0 172 218 74 120 2.20e-15 73.2
Msa0288990 MtrunA17_Chr2g0317041 68.085 47 15 0 172 218 99 145 2.30e-15 73.6
Msa0288990 MtrunA17_Chr8g0377431 45.588 68 37 0 158 225 137 204 7.36e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288990 AT1G69170.1 56.287 167 62 3 123 288 83 239 3.27e-50 178
Msa0288990 AT5G50570.1 40.239 251 122 9 123 355 42 282 1.38e-38 145
Msa0288990 AT5G50570.2 40.239 251 122 9 123 355 42 282 1.38e-38 145
Msa0288990 AT5G50670.1 40.239 251 122 9 123 355 42 282 1.38e-38 145
Msa0288990 AT5G50670.2 40.239 251 122 9 123 355 42 282 1.38e-38 145
Msa0288990 AT1G20980.1 55.469 128 51 3 123 245 67 193 1.84e-34 139
Msa0288990 AT2G42200.1 56.098 123 46 3 158 272 58 180 3.04e-34 133
Msa0288990 AT3G57920.1 62.857 105 38 1 144 247 30 134 1.80e-33 130
Msa0288990 AT1G27370.6 52.459 122 49 3 155 272 155 271 2.02e-33 130
Msa0288990 AT1G27370.1 52.459 122 49 3 155 272 155 271 4.37e-33 130
Msa0288990 AT1G27370.5 52.459 122 49 3 155 272 155 271 4.37e-33 130
Msa0288990 AT1G27370.3 52.459 122 49 3 155 272 155 271 4.37e-33 130
Msa0288990 AT1G27370.2 52.459 122 49 3 155 272 155 271 4.37e-33 130
Msa0288990 AT1G27370.4 52.459 122 49 3 155 272 155 271 4.37e-33 130
Msa0288990 AT1G27370.7 52.459 122 49 3 155 272 155 271 4.37e-33 130
Msa0288990 AT5G43270.3 49.254 134 66 1 118 249 113 246 6.35e-33 130
Msa0288990 AT5G43270.1 49.254 134 66 1 118 249 113 246 6.35e-33 130
Msa0288990 AT5G43270.2 49.254 134 66 1 118 249 113 246 6.35e-33 130
Msa0288990 AT2G47070.1 58.407 113 36 3 142 249 79 185 1.11e-32 133
Msa0288990 AT1G02065.1 74.324 74 19 0 172 245 188 261 2.08e-32 127
Msa0288990 AT1G76580.3 63.265 98 30 1 156 247 92 189 1.95e-31 129
Msa0288990 AT1G76580.2 63.265 98 30 1 156 247 92 189 2.03e-31 129
Msa0288990 AT1G76580.1 63.265 98 30 1 156 247 92 189 4.79e-31 129
Msa0288990 AT3G60030.1 67.901 81 26 0 165 245 120 200 5.07e-31 128
Msa0288990 AT2G33810.1 67.568 74 24 0 172 245 54 127 6.09e-31 117
Msa0288990 AT1G27360.2 56.731 104 40 2 169 272 172 270 4.70e-30 122
Msa0288990 AT1G27360.1 56.731 104 40 2 169 272 172 270 4.70e-30 122
Msa0288990 AT1G27360.3 56.731 104 40 2 169 272 172 270 4.70e-30 122
Msa0288990 AT1G27360.4 56.731 104 40 2 169 272 172 270 4.70e-30 122
Msa0288990 AT1G53160.2 60.870 92 32 1 169 256 51 142 6.27e-30 115
Msa0288990 AT1G53160.1 60.870 92 32 1 169 256 51 142 6.27e-30 115
Msa0288990 AT3G15270.1 53.097 113 46 3 172 277 63 175 6.67e-30 116
Msa0288990 AT1G53160.3 60.870 92 32 1 169 256 51 142 9.03e-30 115
Msa0288990 AT5G18830.2 53.333 90 38 2 158 246 127 213 1.61e-21 99.4
Msa0288990 AT5G18830.3 50.549 91 42 1 158 248 127 214 1.64e-21 99.4
Msa0288990 AT5G18830.1 50.549 91 42 1 158 248 127 214 1.73e-21 99.4
Msa0288990 AT2G47070.2 76.000 50 12 0 196 245 1 50 2.54e-18 89.4
Msa0288990 AT1G02065.2 68.750 48 15 0 172 219 188 235 6.23e-17 80.9

Find 145 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTTTCATTATTATTT+AGG 0.144422 2_3:+35195928 Msa0288990:five_prime_UTR
AATGAATGTGAAAGCCATTT+TGG 0.169213 2_3:-35195976 None:intergenic
TTAGATTACATTCACTAAAT+TGG 0.174095 2_3:-35200806 None:intergenic
CCCCATCTACCATTTGAAAA+TGG 0.198339 2_3:-35199897 None:intergenic
CGAGGATGTGCATTTATAAT+TGG 0.205509 2_3:-35199415 None:intergenic
TCGATTGGTTTGAAGAGTTT+TGG 0.206676 2_3:-35199708 None:intergenic
TTTATGCAAAGTTGAGATTT+TGG 0.223333 2_3:+35196242 Msa0288990:five_prime_UTR
TGTATCAATGTGTGACATTC+AGG 0.241788 2_3:+35200733 Msa0288990:three_prime_UTR
CCACAAGTTGGTATTCATTC+TGG 0.255651 2_3:+35197778 Msa0288990:CDS
ACTATTCAGGTTTCATTTGC+TGG 0.261393 2_3:+35197687 Msa0288990:intron
GCTTTCTACGGCGCTCATTA+TGG 0.281569 2_3:-35197756 None:intergenic
GCATCAGAGGCTAGCCTTGC+AGG 0.289594 2_3:+35200023 Msa0288990:CDS
AGCTTCAGGTCTTTAAATAC+TGG 0.310334 2_3:-35200950 None:intergenic
AAACATGACTCATGCTATAA+TGG 0.320615 2_3:-35199777 None:intergenic
TTACTGTTTGATATCAATAT+AGG 0.332199 2_3:-35199865 None:intergenic
TCTCTTTCTGAAAATGCATT+TGG 0.333291 2_3:-35196599 None:intergenic
TATTGTTGTACGAAGGAAAC+AGG 0.337560 2_3:-35199447 None:intergenic
ATTGCTTACTGCCAAGTATA+TGG 0.338603 2_3:+35196824 Msa0288990:CDS
ATCCAAGGAGGCTCGAATTC+CGG 0.339302 2_3:+35199553 Msa0288990:CDS
CCAAGTATATGGATGTAATA+AGG 0.348075 2_3:+35196835 Msa0288990:CDS
TTGTCATAAACACTTCAATA+AGG 0.351623 2_3:+35200759 Msa0288990:three_prime_UTR
GGAAGGTTGCTTCAGTCATA+TGG 0.360584 2_3:+35197808 Msa0288990:CDS
ACCTATTGAGTTTGAATGCT+TGG 0.360932 2_3:-35196639 None:intergenic
CAAAGGTTCAATCTTGAGTT+GGG 0.377495 2_3:+35196388 Msa0288990:CDS
TCAGGAAAGAACTTAATATC+TGG 0.386887 2_3:+35200558 Msa0288990:three_prime_UTR
CCTTATTACATCCATATACT+TGG 0.392117 2_3:-35196835 None:intergenic
CACTTCCTAAGGAGGTATCT+TGG 0.394888 2_3:-35199591 None:intergenic
CCTGTGCAGCTTGTTGTGAC+TGG 0.401726 2_3:+35200505 Msa0288990:three_prime_UTR
GATGATGTTGATGTTGTTGT+TGG 0.409003 2_3:+35196536 Msa0288990:CDS
TGAAGCTGACCAATGGCGGC+TGG 0.414356 2_3:+35200636 Msa0288990:three_prime_UTR
ATAGTTCTTTCTCTCTTATG+AGG 0.415158 2_3:+35196219 Msa0288990:five_prime_UTR
GAAGGTTGCTTCAGTCATAT+GGG 0.415916 2_3:+35197809 Msa0288990:CDS
CCTAAAACCGGTTCCGCCTT+CGG 0.416837 2_3:-35199377 None:intergenic
TTACATTACATTCTAGCTGT+TGG 0.416888 2_3:-35200690 None:intergenic
TTGGAAGAAGTAGTGGGAAT+GGG 0.418540 2_3:-35195861 None:intergenic
ATAAAAGCCGAAGGCGGAAC+CGG 0.423047 2_3:+35199370 Msa0288990:CDS
ATCGTGGTACCCTTTGAAAA+TGG 0.423769 2_3:-35196737 None:intergenic
GATTATGCAGAAGAAGCTTC+AGG 0.426141 2_3:-35200964 None:intergenic
GATTTGAAGCTTGGTAGATT+TGG 0.426241 2_3:+35196689 Msa0288990:CDS
GATGGAACTCAAAGTGAAAC+AGG 0.427062 2_3:-35195828 None:intergenic
TTACGTAAAATGCTTTCAAC+AGG 0.432048 2_3:+35200082 Msa0288990:exon
ATCCGGAATTCGAGCCTCCT+TGG 0.439031 2_3:-35199555 None:intergenic
TCACTCATTGATTTGAAGCT+TGG 0.440222 2_3:+35196680 Msa0288990:CDS
TGACTTTATCAGTGTGTACT+TGG 0.441137 2_3:-35195880 None:intergenic
TGACTGGAAATATTCGTATC+AGG 0.442828 2_3:+35200521 Msa0288990:three_prime_UTR
CCCATCTACCATTTGAAAAT+GGG 0.443534 2_3:-35199896 None:intergenic
ATCAGCTGTTCAAGGATTAT+CGG 0.450349 2_3:+35199639 Msa0288990:CDS
TACCAACTTGTGGCTTTCTA+CGG 0.452749 2_3:-35197768 None:intergenic
TCAGAAGATAAGACCTCGCC+GGG 0.459016 2_3:-35199316 None:intergenic
ATCGAAGAGGGTGAGGTCTT+CGG 0.459977 2_3:+35196787 Msa0288990:CDS
TTATTCCAAGATACCTCCTT+AGG 0.463781 2_3:+35199586 Msa0288990:CDS
ACAAAGGTTCAATCTTGAGT+TGG 0.466604 2_3:+35196387 Msa0288990:CDS
AGCTGTCGTAAACGTCTTGC+TGG 0.469170 2_3:+35197733 Msa0288990:CDS
TTTAGTGATATGTTCTCAAA+GGG 0.471354 2_3:-35196055 None:intergenic
GCATGGGAATTCCTGTCGAT+TGG 0.473964 2_3:-35199723 None:intergenic
ATTGAAGTCTTCACTTCCTA+AGG 0.476688 2_3:-35199602 None:intergenic
TCCAAGCATTCAAACTCAAT+AGG 0.477091 2_3:+35196638 Msa0288990:CDS
GAAACAGAATCAGCTGTTCA+AGG 0.477684 2_3:+35199631 Msa0288990:CDS
AGAAATGTGGAAATAGTAAC+TGG 0.480981 2_3:+35199338 Msa0288990:CDS
AATGGTCGTGCCATCTTCAC+AGG 0.486457 2_3:-35199962 None:intergenic
TATTGCGTCCCAGCCGCCAT+TGG 0.487032 2_3:-35200645 None:intergenic
ATGAGTCATGTTTCTGAAAG+TGG 0.489233 2_3:+35199787 Msa0288990:CDS
GACCGTCTTTCCTGTGAAGA+TGG 0.490853 2_3:+35199952 Msa0288990:CDS
CTGAAAGTGGCGTCTCGGAT+AGG 0.491794 2_3:+35199800 Msa0288990:CDS
TCAGCTGTTCAAGGATTATC+GGG 0.494261 2_3:+35199640 Msa0288990:CDS
GGTATTCATTCTGGAAGAGC+TGG 0.501433 2_3:+35197787 Msa0288990:CDS
CTGATGTTAGCATGGTTCCT+TGG 0.502694 2_3:-35199267 None:intergenic
ACTTCTAAAGTAATAGTGAA+TGG 0.503268 2_3:+35196917 Msa0288990:CDS
CCTCGCCGGGGAGTATCTCT+TGG 0.504582 2_3:-35199303 None:intergenic
CTTGGAAGAAGTAGTGGGAA+TGG 0.505481 2_3:-35195862 None:intergenic
AACTCTTCAAACCAATCGAC+AGG 0.506137 2_3:+35199712 Msa0288990:CDS
CAGGATAAGAACTTAGTGTC+AGG 0.506236 2_3:+35200540 Msa0288990:three_prime_UTR
AATGGTGCTACATCTGCTAC+TGG 0.508879 2_3:+35199493 Msa0288990:CDS
ATAATTGGAATAGAAGAAAG+AGG 0.509513 2_3:-35199400 None:intergenic
ATGATTCTTCCTGCTCTCTA+CGG 0.510890 2_3:+35200058 Msa0288990:CDS
CTATAATGGCTGTGGCTGCT+CGG 0.513604 2_3:-35199763 None:intergenic
GAAACATACCCTTTATCTTG+AGG 0.518442 2_3:-35196341 None:intergenic
TTACGTAATCCGTAGAGAGC+AGG 0.520716 2_3:-35200067 None:intergenic
GGCAGTAAGCAATCTGAGAA+TGG 0.521246 2_3:-35196814 None:intergenic
GAAAATGACAACAATAATCA+AGG 0.521619 2_3:+35196452 Msa0288990:CDS
TTGCTGGCTGAATTTGATGA+TGG 0.522089 2_3:+35197703 Msa0288990:CDS
GTTTAGTGATATGTTCTCAA+AGG 0.522350 2_3:-35196056 None:intergenic
AGAAGAAAGAGGCCTAAAAC+CGG 0.523177 2_3:-35199389 None:intergenic
TTGGAATAATGATTGTGATC+CGG 0.528558 2_3:-35199572 None:intergenic
CGACAGTTGAAGCAAGTCAA+TGG 0.529505 2_3:-35199980 None:intergenic
TTGATCTTGTGATGGAGTCA+TGG 0.531002 2_3:+35196309 Msa0288990:exon
AATAACTAAATGACCAGGCA+TGG 0.532105 2_3:-35199740 None:intergenic
CCAGTCACAACAAGCTGCAC+AGG 0.532430 2_3:-35200505 None:intergenic
TCGACAGGAATTCCCATGCC+TGG 0.536060 2_3:+35199727 Msa0288990:CDS
TTCGAGCCTCCTTGGATAGG+AGG 0.548698 2_3:-35199547 None:intergenic
TGGGGTCTTTGATCTTGTGA+TGG 0.556099 2_3:+35196301 Msa0288990:exon
CCACACCATCGAAGAGGGTG+AGG 0.557112 2_3:+35196780 Msa0288990:CDS
CGTTGACAAAATCCGACCCC+TGG 0.557627 2_3:-35199924 None:intergenic
AGATTTGGTGATCATAGAGA+TGG 0.560484 2_3:+35196704 Msa0288990:CDS
GAAGCTGACCAATGGCGGCT+GGG 0.561893 2_3:+35200637 Msa0288990:three_prime_UTR
TCTGAGTTAAATCATACAGA+TGG 0.562489 2_3:+35199829 Msa0288990:CDS
GAATTCGAGCCTCCTTGGAT+AGG 0.563220 2_3:-35199550 None:intergenic
GAAGACCTCACCCTCTTCGA+TGG 0.563679 2_3:-35196785 None:intergenic
TGTTTCTGAAAGTGGCGTCT+CGG 0.565635 2_3:+35199795 Msa0288990:CDS
TGTGTACTTGGAAGAAGTAG+TGG 0.566096 2_3:-35195868 None:intergenic
AATTGTTTATTGTTGTACGA+AGG 0.567910 2_3:-35199454 None:intergenic
TTGGATATATGTAGATAGAG+AGG 0.569382 2_3:-35200671 None:intergenic
ATATGCCAAGAGATACTCCC+CGG 0.569946 2_3:+35199298 Msa0288990:CDS
CTCAGAAGATAAGACCTCGC+CGG 0.570555 2_3:-35199317 None:intergenic
GAAGTCTTCACTTCCTAAGG+AGG 0.571303 2_3:-35199599 None:intergenic
CGCCGTAGAAAGCCACAAGT+TGG 0.575021 2_3:+35197766 Msa0288990:CDS
CCTCACCCTCTTCGATGGTG+TGG 0.577436 2_3:-35196780 None:intergenic
CTCGGAATAACTAAATGACC+AGG 0.578215 2_3:-35199745 None:intergenic
GACTCATGCTATAATGGCTG+TGG 0.580953 2_3:-35199771 None:intergenic
CTTACAGATAGCAGATTCCA+AGG 0.587504 2_3:+35199250 Msa0288990:intron
TGCCATCTTCACAGGAAAGA+CGG 0.587669 2_3:-35199954 None:intergenic
TCTGTATGATTTAACTCAGA+CGG 0.594329 2_3:-35199826 None:intergenic
GGTCAATATCCTCCTATCCA+AGG 0.597117 2_3:+35199538 Msa0288990:CDS
AAAAGATGCTGATGTTAGCA+TGG 0.597201 2_3:-35199275 None:intergenic
TAGTGAATGGAATTGAACAA+AGG 0.600144 2_3:+35196930 Msa0288990:CDS
AGTTGAAGCAGAGAACTGAA+TGG 0.603922 2_3:-35196021 None:intergenic
CGGCTCGTGAAGCTGACCAA+TGG 0.603959 2_3:+35200629 Msa0288990:three_prime_UTR
TGGATATATGTAGATAGAGA+GGG 0.609573 2_3:-35200670 None:intergenic
CCAGAATGAATACCAACTTG+TGG 0.611115 2_3:-35197778 None:intergenic
ATAACTAAATGACCAGGCAT+GGG 0.613150 2_3:-35199739 None:intergenic
CTCGTGAAGCTGACCAATGG+CGG 0.613637 2_3:+35200632 Msa0288990:three_prime_UTR
TTCAGCGTGTTGAGCATCAG+AGG 0.614077 2_3:+35200010 Msa0288990:CDS
AAGGTTGCTTCAGTCATATG+GGG 0.618024 2_3:+35197810 Msa0288990:CDS
GTCTTATCTTCTGAGAAATG+TGG 0.623862 2_3:+35199325 Msa0288990:CDS
ATCGTCCACACCATCGAAGA+GGG 0.624868 2_3:+35196775 Msa0288990:CDS
GTGTACTTGGAAGAAGTAGT+GGG 0.629351 2_3:-35195867 None:intergenic
TTCATTCTGGAAGAGCTGGA+AGG 0.630831 2_3:+35197791 Msa0288990:CDS
GTTGTAAAGATTATCACAAG+AGG 0.638828 2_3:+35196867 Msa0288990:CDS
AGCATCTTCTGTGAAAACAA+TGG 0.648314 2_3:+35199517 Msa0288990:CDS
TATGTTTCAAATGACACACT+TGG 0.649632 2_3:+35196356 Msa0288990:CDS
ACACTTGGTAGTAGAAACAA+AGG 0.653225 2_3:+35196371 Msa0288990:CDS
TGCAGACCTATAAAAGCCGA+AGG 0.654610 2_3:+35199361 Msa0288990:CDS
GATCGTCCACACCATCGAAG+AGG 0.655116 2_3:+35196774 Msa0288990:CDS
GGATTATCGGGAGTATCAGA+CGG 0.658305 2_3:+35199652 Msa0288990:CDS
ATTGTTGTACGAAGGAAACA+GGG 0.661617 2_3:-35199446 None:intergenic
GGAAACAGGGTTCTTGAACG+AGG 0.672658 2_3:-35199433 None:intergenic
TCCAGACGACGACAAAATCG+TGG 0.673898 2_3:-35196753 None:intergenic
CCAAGAGATACTCCCCGGCG+AGG 0.681967 2_3:+35199303 Msa0288990:CDS
TGAAGCAGAGAACTGAATGG+AGG 0.683282 2_3:-35196018 None:intergenic
GGATGTAATAAGGATTTGAG+TGG 0.689862 2_3:+35196845 Msa0288990:CDS
CAATATCCTCCTATCCAAGG+AGG 0.704515 2_3:+35199541 Msa0288990:CDS
AGGTTGCTTCAGTCATATGG+GGG 0.713878 2_3:+35197811 Msa0288990:CDS
AGACCTATAAAAGCCGAAGG+CGG 0.722914 2_3:+35199364 Msa0288990:CDS
TTATCGGGAGTATCAGACGG+TGG 0.745082 2_3:+35199655 Msa0288990:CDS
CAGAAGATAAGACCTCGCCG+GGG 0.808545 2_3:-35199315 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTTAAAATTCTTCA+TGG + chr2_3:35198157-35198176 Msa0288990:intron 10.0%
!! TTTCTCTTTCATTATTATTT+AGG + chr2_3:35195928-35195947 Msa0288990:five_prime_UTR 15.0%
!! ATAAAAAAAAAATGTCAGAA+GGG - chr2_3:35196104-35196123 None:intergenic 15.0%
!! AATAAAAAAAAAATGTCAGA+AGG - chr2_3:35196105-35196124 None:intergenic 15.0%
!! AAAAAACACAAAATTAGTTA+TGG + chr2_3:35197056-35197075 Msa0288990:intron 15.0%
!! AAATAGGAATATTCATAAAA+TGG - chr2_3:35197397-35197416 None:intergenic 15.0%
!!! CTAAATTTTGATATTGATTA+TGG + chr2_3:35198264-35198283 Msa0288990:intron 15.0%
!! AAACAAAAAGATTCATTATA+TGG + chr2_3:35198700-35198719 Msa0288990:intron 15.0%
!! GCTTTATAATATTAATAATC+AGG - chr2_3:35199098-35199117 None:intergenic 15.0%
!!! TAAAAAAAAGTCATTTTGAA+AGG - chr2_3:35199120-35199139 None:intergenic 15.0%
!! TTTAATATTCAAAACCATAT+TGG + chr2_3:35199150-35199169 Msa0288990:intron 15.0%
!! GAAATGAAAATTTATTTATG+TGG + chr2_3:35200382-35200401 Msa0288990:intron 15.0%
!!! TACTTTTCTTTTTTCCAAAA+TGG + chr2_3:35195962-35195981 Msa0288990:five_prime_UTR 20.0%
!!! TGTTTTTTCCATTTTAGAAA+AGG - chr2_3:35197373-35197392 None:intergenic 20.0%
!! ATCATAATCAACAGAAAAAT+AGG - chr2_3:35197413-35197432 None:intergenic 20.0%
!! AGTTGAAAATTAGAGTATAT+TGG + chr2_3:35198129-35198148 Msa0288990:intron 20.0%
!! TTAAGTACAAAGTGAAAATT+GGG - chr2_3:35198241-35198260 None:intergenic 20.0%
!! ATTAAGTACAAAGTGAAAAT+TGG - chr2_3:35198242-35198261 None:intergenic 20.0%
!! AAGAGAAAATTTGTAACAAA+TGG - chr2_3:35198523-35198542 None:intergenic 20.0%
!! AAATTATACTAGAGAGTTTA+AGG + chr2_3:35198912-35198931 Msa0288990:intron 20.0%
!! TTAATAATCAGGAAAGTAAA+TGG - chr2_3:35199087-35199106 None:intergenic 20.0%
!! TTACTGTTTGATATCAATAT+AGG - chr2_3:35199868-35199887 None:intergenic 20.0%
!! TAATTTGAAAACATGAAACA+TGG - chr2_3:35200270-35200289 None:intergenic 20.0%
!! TTAGATTACATTCACTAAAT+TGG - chr2_3:35200809-35200828 None:intergenic 20.0%
! TTTAGTGATATGTTCTCAAA+GGG - chr2_3:35196058-35196077 None:intergenic 25.0%
!!! TCTCAATCATCAATCTTTTT+TGG + chr2_3:35196138-35196157 Msa0288990:five_prime_UTR 25.0%
!! TTTATGCAAAGTTGAGATTT+TGG + chr2_3:35196242-35196261 Msa0288990:five_prime_UTR 25.0%
! TATTCTTGCAAAAATTGAAG+TGG + chr2_3:35196281-35196300 Msa0288990:five_prime_UTR 25.0%
! ATTCTTGCAAAAATTGAAGT+GGG + chr2_3:35196282-35196301 Msa0288990:five_prime_UTR 25.0%
!!! TCATTTTCTATGTTTTGTTG+AGG - chr2_3:35196440-35196459 None:intergenic 25.0%
! GAAAATGACAACAATAATCA+AGG + chr2_3:35196452-35196471 Msa0288990:CDS 25.0%
!! AATTGATACACCATTTTCAA+AGG + chr2_3:35196727-35196746 Msa0288990:CDS 25.0%
!! ATTGATACACCATTTTCAAA+GGG + chr2_3:35196728-35196747 Msa0288990:CDS 25.0%
!!! ACTTCTAAAGTAATAGTGAA+TGG + chr2_3:35196917-35196936 Msa0288990:CDS 25.0%
!!! ATGTTTTGTTTCACATCTTT+TGG + chr2_3:35196995-35197014 Msa0288990:intron 25.0%
!!! TTGCAAAAAATTTAAGTTGC+TGG + chr2_3:35197122-35197141 Msa0288990:intron 25.0%
! AGTCCAAATTGATCAATATA+TGG + chr2_3:35197294-35197313 Msa0288990:intron 25.0%
! AGACCATATATTGATCAATT+TGG - chr2_3:35197300-35197319 None:intergenic 25.0%
! AATTGATCAATATATGGTCT+TGG + chr2_3:35197300-35197319 Msa0288990:intron 25.0%
!!! TTAATAGATTCAGTCGTTTT+CGG + chr2_3:35197338-35197357 Msa0288990:intron 25.0%
!!! TACTACTTCCTTTTCTAAAA+TGG + chr2_3:35197362-35197381 Msa0288990:intron 25.0%
!!! TTTTGACTTTTGCTTTACTA+AGG + chr2_3:35197451-35197470 Msa0288990:intron 25.0%
!! TAATGTTTAGCTTACTATTC+AGG + chr2_3:35197674-35197693 Msa0288990:intron 25.0%
! AAATCCACTAAAAAGTAGTT+AGG - chr2_3:35197892-35197911 None:intergenic 25.0%
!! ATTGGGAACAAATTTTACTA+TGG - chr2_3:35198224-35198243 None:intergenic 25.0%
! TGAAACTGAATTACATATCA+TGG - chr2_3:35198358-35198377 None:intergenic 25.0%
! ATTCAAAACCATATTGGTAA+AGG + chr2_3:35199156-35199175 Msa0288990:intron 25.0%
! TATGAAAACCTTTACCAATA+TGG - chr2_3:35199167-35199186 None:intergenic 25.0%
! ATAATTGGAATAGAAGAAAG+AGG - chr2_3:35199403-35199422 None:intergenic 25.0%
! AATTGTTTATTGTTGTACGA+AGG - chr2_3:35199457-35199476 None:intergenic 25.0%
!! TTTCCTTTTCTTCAAGAAAA+TGG + chr2_3:35199475-35199494 Msa0288990:CDS 25.0%
!!! GAAGAATAAATCTTTGAAGT+CGG + chr2_3:35200326-35200345 Msa0288990:intron 25.0%
! AAATGTTGTGAGTGATTTAA+TGG - chr2_3:35200445-35200464 None:intergenic 25.0%
! TTGTCATAAACACTTCAATA+AGG + chr2_3:35200759-35200778 Msa0288990:three_prime_UTR 25.0%
!!! ATTTTGATGAATGTTGATTC+TGG + chr2_3:35200848-35200867 Msa0288990:three_prime_UTR 25.0%
! AATGAATGTGAAAGCCATTT+TGG - chr2_3:35195979-35195998 None:intergenic 30.0%
GTTTAGTGATATGTTCTCAA+AGG - chr2_3:35196059-35196078 None:intergenic 30.0%
ATAGTTCTTTCTCTCTTATG+AGG + chr2_3:35196219-35196238 Msa0288990:five_prime_UTR 30.0%
!! GAGATTTTGGTACTATTTTG+AGG + chr2_3:35196255-35196274 Msa0288990:five_prime_UTR 30.0%
TTCTTGCAAAAATTGAAGTG+GGG + chr2_3:35196283-35196302 Msa0288990:five_prime_UTR 30.0%
!! AGTTTTGATCCTCAAGATAA+AGG + chr2_3:35196332-35196351 Msa0288990:CDS 30.0%
!! GTTTTGATCCTCAAGATAAA+GGG + chr2_3:35196333-35196352 Msa0288990:CDS 30.0%
TATGTTTCAAATGACACACT+TGG + chr2_3:35196356-35196375 Msa0288990:CDS 30.0%
TTGAGGTAAAAAACTAGATG+GGG - chr2_3:35196423-35196442 None:intergenic 30.0%
GTTGAGGTAAAAAACTAGAT+GGG - chr2_3:35196424-35196443 None:intergenic 30.0%
TGTTGAGGTAAAAAACTAGA+TGG - chr2_3:35196425-35196444 None:intergenic 30.0%
! CAACAATAATCAAGGTTTTG+AGG + chr2_3:35196460-35196479 Msa0288990:CDS 30.0%
!!! TAATCAAGGTTTTGAGGAAT+TGG + chr2_3:35196466-35196485 Msa0288990:CDS 30.0%
!!! AATCAAGGTTTTGAGGAATT+GGG + chr2_3:35196467-35196486 Msa0288990:CDS 30.0%
! CACTAGTAGTTCTTTTGTTA+TGG + chr2_3:35196571-35196590 Msa0288990:CDS 30.0%
! TCTCTTTCTGAAAATGCATT+TGG - chr2_3:35196602-35196621 None:intergenic 30.0%
CCTTATTACATCCATATACT+TGG - chr2_3:35196838-35196857 None:intergenic 30.0%
CCAAGTATATGGATGTAATA+AGG + chr2_3:35196835-35196854 Msa0288990:CDS 30.0%
GTTGTAAAGATTATCACAAG+AGG + chr2_3:35196867-35196886 Msa0288990:CDS 30.0%
TAGTGAATGGAATTGAACAA+AGG + chr2_3:35196930-35196949 Msa0288990:CDS 30.0%
TTTGCAACATATGTTTGAGA+AGG - chr2_3:35197109-35197128 None:intergenic 30.0%
ATCTACATGACAAACAATTG+AGG - chr2_3:35197214-35197233 None:intergenic 30.0%
TACCAAATCTGCATTATTTG+TGG + chr2_3:35197242-35197261 Msa0288990:intron 30.0%
ACCAAATCTGCATTATTTGT+GGG + chr2_3:35197243-35197262 Msa0288990:intron 30.0%
!! TAATAGATTCAGTCGTTTTC+GGG + chr2_3:35197339-35197358 Msa0288990:intron 30.0%
!! TTGGATTTTAGTCACTTTAG+AGG + chr2_3:35197474-35197493 Msa0288990:intron 30.0%
!! TGGATTTTAGTCACTTTAGA+GGG + chr2_3:35197475-35197494 Msa0288990:intron 30.0%
GATGAGTAAATTCACTTTAG+AGG - chr2_3:35197572-35197591 None:intergenic 30.0%
CACTAAAAAGTAGTTAGGAA+GGG - chr2_3:35197887-35197906 None:intergenic 30.0%
AATATCTGATCTTGATCCAA+CGG - chr2_3:35197965-35197984 None:intergenic 30.0%
TAAATATCGAGCTTGAAATC+TGG + chr2_3:35198023-35198042 Msa0288990:intron 30.0%
AAATATCGAGCTTGAAATCT+GGG + chr2_3:35198024-35198043 Msa0288990:intron 30.0%
TCATGGATAATGATATCATC+CGG + chr2_3:35198174-35198193 Msa0288990:intron 30.0%
TTACATATCATGGAATCCTT+TGG - chr2_3:35198348-35198367 None:intergenic 30.0%
! TTGAATTCTGATTGATTCCA+TGG + chr2_3:35198468-35198487 Msa0288990:intron 30.0%
ACAAAAGTGGGAGAATAATT+CGG - chr2_3:35198552-35198571 None:intergenic 30.0%
!! AATTATTCTCCCACTTTTGT+TGG + chr2_3:35198552-35198571 Msa0288990:intron 30.0%
AGATGACAAATGATAAAGGA+TGG - chr2_3:35198585-35198604 None:intergenic 30.0%
CCAAAGATGACAAATGATAA+AGG - chr2_3:35198589-35198608 None:intergenic 30.0%
CCTTTATCATTTGTCATCTT+TGG + chr2_3:35198586-35198605 Msa0288990:intron 30.0%
!! GTGTAAAGCTAGCTTTAATT+TGG + chr2_3:35198608-35198627 Msa0288990:intron 30.0%
ATTTGGATTCTTTAGTCACA+TGG + chr2_3:35198625-35198644 Msa0288990:intron 30.0%
ATTGTTGAACAAGTCACTAA+TGG - chr2_3:35198661-35198680 None:intergenic 30.0%
! GACTTGTTCAACAATTACAA+TGG + chr2_3:35198666-35198685 Msa0288990:intron 30.0%
! AATGCCAAATTTTCGTCAAT+GGG + chr2_3:35198753-35198772 Msa0288990:intron 30.0%
TAATTAGCTGTTTGTCCAAA+TGG - chr2_3:35198781-35198800 None:intergenic 30.0%
TCAAATAATCCAATGCAAAC+AGG + chr2_3:35199026-35199045 Msa0288990:intron 30.0%
TAATTACTCAGAGACAAACA+TGG - chr2_3:35199214-35199233 None:intergenic 30.0%
GAGTAATTAACAAGATTGTG+TGG + chr2_3:35199225-35199244 Msa0288990:intron 30.0%
AGAAATGTGGAAATAGTAAC+TGG + chr2_3:35199338-35199357 Msa0288990:CDS 30.0%
TTGGAATAATGATTGTGATC+CGG - chr2_3:35199575-35199594 None:intergenic 30.0%
AAACATGACTCATGCTATAA+TGG - chr2_3:35199780-35199799 None:intergenic 30.0%
TCTGTATGATTTAACTCAGA+CGG - chr2_3:35199829-35199848 None:intergenic 30.0%
TCTGAGTTAAATCATACAGA+TGG + chr2_3:35199829-35199848 Msa0288990:CDS 30.0%
TTACGTAAAATGCTTTCAAC+AGG + chr2_3:35200082-35200101 Msa0288990:exon 30.0%
! GAAGTTCTTTTCTGCAAAAA+TGG - chr2_3:35200483-35200502 None:intergenic 30.0%
TCAGGAAAGAACTTAATATC+TGG + chr2_3:35200558-35200577 Msa0288990:three_prime_UTR 30.0%
!! TAGTTTTACTTGTGCTGAAT+CGG + chr2_3:35200609-35200628 Msa0288990:three_prime_UTR 30.0%
TGGATATATGTAGATAGAGA+GGG - chr2_3:35200673-35200692 None:intergenic 30.0%
TTGGATATATGTAGATAGAG+AGG - chr2_3:35200674-35200693 None:intergenic 30.0%
! TTACATTACATTCTAGCTGT+TGG - chr2_3:35200693-35200712 None:intergenic 30.0%
TGACTTTATCAGTGTGTACT+TGG - chr2_3:35195883-35195902 None:intergenic 35.0%
GAAACATACCCTTTATCTTG+AGG - chr2_3:35196344-35196363 None:intergenic 35.0%
! ACACTTGGTAGTAGAAACAA+AGG + chr2_3:35196371-35196390 Msa0288990:CDS 35.0%
ACAAAGGTTCAATCTTGAGT+TGG + chr2_3:35196387-35196406 Msa0288990:CDS 35.0%
CAAAGGTTCAATCTTGAGTT+GGG + chr2_3:35196388-35196407 Msa0288990:CDS 35.0%
! TTTGAGGAATTGGGTTTTCA+TGG + chr2_3:35196476-35196495 Msa0288990:CDS 35.0%
! ATTGGGTTTTCATGGTATGT+TGG + chr2_3:35196484-35196503 Msa0288990:CDS 35.0%
! TTGGGTTTTCATGGTATGTT+GGG + chr2_3:35196485-35196504 Msa0288990:CDS 35.0%
GATGATGTTGATGTTGTTGT+TGG + chr2_3:35196536-35196555 Msa0288990:CDS 35.0%
TCCAAGCATTCAAACTCAAT+AGG + chr2_3:35196638-35196657 Msa0288990:CDS 35.0%
ACCTATTGAGTTTGAATGCT+TGG - chr2_3:35196642-35196661 None:intergenic 35.0%
!! TCACTCATTGATTTGAAGCT+TGG + chr2_3:35196680-35196699 Msa0288990:CDS 35.0%
! GATTTGAAGCTTGGTAGATT+TGG + chr2_3:35196689-35196708 Msa0288990:CDS 35.0%
!! AGATTTGGTGATCATAGAGA+TGG + chr2_3:35196704-35196723 Msa0288990:CDS 35.0%
ATTGCTTACTGCCAAGTATA+TGG + chr2_3:35196824-35196843 Msa0288990:CDS 35.0%
GGATGTAATAAGGATTTGAG+TGG + chr2_3:35196845-35196864 Msa0288990:CDS 35.0%
!! GGTTTTGTCAACAATGTAGT+AGG + chr2_3:35196951-35196970 Msa0288990:CDS 35.0%
TACATGACAAACAATTGAGG+AGG - chr2_3:35197211-35197230 None:intergenic 35.0%
CCAAATCTGCATTATTTGTG+GGG + chr2_3:35197244-35197263 Msa0288990:intron 35.0%
ATTATTTGTGGGGAAATGGT+TGG + chr2_3:35197254-35197273 Msa0288990:intron 35.0%
! GACTTTTGCTTTACTAAGGT+TGG + chr2_3:35197455-35197474 Msa0288990:intron 35.0%
!! GGATTTTAGTCACTTTAGAG+GGG + chr2_3:35197476-35197495 Msa0288990:intron 35.0%
CCACTTCAGAAAGTAGAATT+TGG - chr2_3:35197604-35197623 None:intergenic 35.0%
! CCAAATTCTACTTTCTGAAG+TGG + chr2_3:35197601-35197620 Msa0288990:intron 35.0%
! ACTATTCAGGTTTCATTTGC+TGG + chr2_3:35197687-35197706 Msa0288990:intron 35.0%
CATATGGGGGTAATATTCTA+TGG + chr2_3:35197824-35197843 Msa0288990:intron 35.0%
TAAAAAGTAGTTAGGAAGGG+TGG - chr2_3:35197884-35197903 None:intergenic 35.0%
CCACTAAAAAGTAGTTAGGA+AGG - chr2_3:35197888-35197907 None:intergenic 35.0%
!!! CCTTCCTAACTACTTTTTAG+TGG + chr2_3:35197885-35197904 Msa0288990:intron 35.0%
!! CAATGGGCTAATTAATTGCA+TGG - chr2_3:35197938-35197957 None:intergenic 35.0%
CATGCAATTAATTAGCCCAT+TGG + chr2_3:35197936-35197955 Msa0288990:intron 35.0%
! GACCACTTATATACTGATTG+CGG + chr2_3:35198067-35198086 Msa0288990:intron 35.0%
TTCCGCAATCAGTATATAAG+TGG - chr2_3:35198072-35198091 None:intergenic 35.0%
!! ATGATATCATCCGGTTTTGA+TGG + chr2_3:35198183-35198202 Msa0288990:intron 35.0%
!! TGATATCATCCGGTTTTGAT+GGG + chr2_3:35198184-35198203 Msa0288990:intron 35.0%
TTCTACATACCCATCAAAAC+CGG - chr2_3:35198196-35198215 None:intergenic 35.0%
!!! ACATCTTTTTTCCCTTCATC+GGG - chr2_3:35198441-35198460 None:intergenic 35.0%
!!! CACATCTTTTTTCCCTTCAT+CGG - chr2_3:35198442-35198461 None:intergenic 35.0%
ATGCTGTAGATCTATATCCA+TGG - chr2_3:35198488-35198507 None:intergenic 35.0%
ATGGATATAGATCTACAGCA+TGG + chr2_3:35198487-35198506 Msa0288990:intron 35.0%
GGTTTAGTGACTATCATAGT+CGG + chr2_3:35198721-35198740 Msa0288990:intron 35.0%
! GAATGCCAAATTTTCGTCAA+TGG + chr2_3:35198752-35198771 Msa0288990:intron 35.0%
AAAAGATGCTGATGTTAGCA+TGG - chr2_3:35199278-35199297 None:intergenic 35.0%
! GTCTTATCTTCTGAGAAATG+TGG + chr2_3:35199325-35199344 Msa0288990:CDS 35.0%
CGAGGATGTGCATTTATAAT+TGG - chr2_3:35199418-35199437 None:intergenic 35.0%
ATTGTTGTACGAAGGAAACA+GGG - chr2_3:35199449-35199468 None:intergenic 35.0%
TATTGTTGTACGAAGGAAAC+AGG - chr2_3:35199450-35199469 None:intergenic 35.0%
! GCACCATTTTCTTGAAGAAA+AGG - chr2_3:35199481-35199500 None:intergenic 35.0%
AGCATCTTCTGTGAAAACAA+TGG + chr2_3:35199517-35199536 Msa0288990:CDS 35.0%
TTATTCCAAGATACCTCCTT+AGG + chr2_3:35199586-35199605 Msa0288990:CDS 35.0%
ATTGAAGTCTTCACTTCCTA+AGG - chr2_3:35199605-35199624 None:intergenic 35.0%
ATCAGCTGTTCAAGGATTAT+CGG + chr2_3:35199639-35199658 Msa0288990:CDS 35.0%
!!! CGATTGGTTTGAAGAGTTTT+GGG - chr2_3:35199710-35199729 None:intergenic 35.0%
!!! TCGATTGGTTTGAAGAGTTT+TGG - chr2_3:35199711-35199730 None:intergenic 35.0%
ATAACTAAATGACCAGGCAT+GGG - chr2_3:35199742-35199761 None:intergenic 35.0%
AATAACTAAATGACCAGGCA+TGG - chr2_3:35199743-35199762 None:intergenic 35.0%
! ATGAGTCATGTTTCTGAAAG+TGG + chr2_3:35199787-35199806 Msa0288990:CDS 35.0%
! TGAAATCGCCCATTTTCAAA+TGG + chr2_3:35199888-35199907 Msa0288990:CDS 35.0%
CCCATCTACCATTTGAAAAT+GGG - chr2_3:35199899-35199918 None:intergenic 35.0%
! CCCATTTTCAAATGGTAGAT+GGG + chr2_3:35199896-35199915 Msa0288990:CDS 35.0%
! CCATTTTCAAATGGTAGATG+GGG + chr2_3:35199897-35199916 Msa0288990:CDS 35.0%
! TCACCAAATTTTCTCTACGT+CGG + chr2_3:35200134-35200153 Msa0288990:intron 35.0%
AAATACACAGTAGTACGACA+TGG - chr2_3:35200182-35200201 None:intergenic 35.0%
TGACTGGAAATATTCGTATC+AGG + chr2_3:35200521-35200540 Msa0288990:three_prime_UTR 35.0%
TGTATCAATGTGTGACATTC+AGG + chr2_3:35200733-35200752 Msa0288990:three_prime_UTR 35.0%
AGCTTCAGGTCTTTAAATAC+TGG - chr2_3:35200953-35200972 None:intergenic 35.0%
GATGGAACTCAAAGTGAAAC+AGG - chr2_3:35195831-35195850 None:intergenic 40.0%
! TTGGAAGAAGTAGTGGGAAT+GGG - chr2_3:35195864-35195883 None:intergenic 40.0%
GTGTACTTGGAAGAAGTAGT+GGG - chr2_3:35195870-35195889 None:intergenic 40.0%
TGTGTACTTGGAAGAAGTAG+TGG - chr2_3:35195871-35195890 None:intergenic 40.0%
AGTTGAAGCAGAGAACTGAA+TGG - chr2_3:35196024-35196043 None:intergenic 40.0%
! TTGATCTTGTGATGGAGTCA+TGG + chr2_3:35196309-35196328 Msa0288990:exon 40.0%
! ATCGTGGTACCCTTTGAAAA+TGG - chr2_3:35196740-35196759 None:intergenic 40.0%
CCCCACAAATAATGCAGATT+TGG - chr2_3:35197247-35197266 None:intergenic 40.0%
CTGCATTATTTGTGGGGAAA+TGG + chr2_3:35197250-35197269 Msa0288990:intron 40.0%
! TTGCTGGCTGAATTTGATGA+TGG + chr2_3:35197703-35197722 Msa0288990:CDS 40.0%
TACCAACTTGTGGCTTTCTA+CGG - chr2_3:35197771-35197790 None:intergenic 40.0%
CCAGAATGAATACCAACTTG+TGG - chr2_3:35197781-35197800 None:intergenic 40.0%
!! CCACAAGTTGGTATTCATTC+TGG + chr2_3:35197778-35197797 Msa0288990:CDS 40.0%
GAAGGTTGCTTCAGTCATAT+GGG + chr2_3:35197809-35197828 Msa0288990:CDS 40.0%
AAGGTTGCTTCAGTCATATG+GGG + chr2_3:35197810-35197829 Msa0288990:CDS 40.0%
GCAATTAATTAGCCCATTGG+TGG + chr2_3:35197939-35197958 Msa0288990:intron 40.0%
AATGCCTATCATCAAGCCAA+AGG + chr2_3:35198329-35198348 Msa0288990:intron 40.0%
!! GAATCCTTTGGCTTGATGAT+AGG - chr2_3:35198336-35198355 None:intergenic 40.0%
!!! CATCTTTTTTCCCTTCATCG+GGG - chr2_3:35198440-35198459 None:intergenic 40.0%
GGTGCAAAACCAACAAAAGT+GGG - chr2_3:35198564-35198583 None:intergenic 40.0%
TGGTGCAAAACCAACAAAAG+TGG - chr2_3:35198565-35198584 None:intergenic 40.0%
TGGATTCTTTAGTCACATGG+TGG + chr2_3:35198628-35198647 Msa0288990:intron 40.0%
GGTTCCCATTGACGAAAATT+TGG - chr2_3:35198760-35198779 None:intergenic 40.0%
TTTCGTCAATGGGAACCATT+TGG + chr2_3:35198763-35198782 Msa0288990:intron 40.0%
AGACTGCTTGGAATAGCTTA+TGG - chr2_3:35198979-35198998 None:intergenic 40.0%
TTAGAACTTGTGAGACTGCT+TGG - chr2_3:35198991-35199010 None:intergenic 40.0%
CTTACAGATAGCAGATTCCA+AGG + chr2_3:35199250-35199269 Msa0288990:intron 40.0%
AGAAGAAAGAGGCCTAAAAC+CGG - chr2_3:35199392-35199411 None:intergenic 40.0%
GAAACAGAATCAGCTGTTCA+AGG + chr2_3:35199631-35199650 Msa0288990:CDS 40.0%
TCAGCTGTTCAAGGATTATC+GGG + chr2_3:35199640-35199659 Msa0288990:CDS 40.0%
AACTCTTCAAACCAATCGAC+AGG + chr2_3:35199712-35199731 Msa0288990:CDS 40.0%
CTCGGAATAACTAAATGACC+AGG - chr2_3:35199748-35199767 None:intergenic 40.0%
! GCCCATTTTCAAATGGTAGA+TGG + chr2_3:35199895-35199914 Msa0288990:CDS 40.0%
CCCCATCTACCATTTGAAAA+TGG - chr2_3:35199900-35199919 None:intergenic 40.0%
ATGATTCTTCCTGCTCTCTA+CGG + chr2_3:35200058-35200077 Msa0288990:CDS 40.0%
TAGCCGACGTAGAGAAAATT+TGG - chr2_3:35200140-35200159 None:intergenic 40.0%
CAGGATAAGAACTTAGTGTC+AGG + chr2_3:35200540-35200559 Msa0288990:three_prime_UTR 40.0%
!! GTAGTGGGAATGGGTTTTGA+GGG - chr2_3:35195855-35195874 None:intergenic 45.0%
!! AGTAGTGGGAATGGGTTTTG+AGG - chr2_3:35195856-35195875 None:intergenic 45.0%
! CTTGGAAGAAGTAGTGGGAA+TGG - chr2_3:35195865-35195884 None:intergenic 45.0%
TGAAGCAGAGAACTGAATGG+AGG - chr2_3:35196021-35196040 None:intergenic 45.0%
TGGGGTCTTTGATCTTGTGA+TGG + chr2_3:35196301-35196320 Msa0288990:exon 45.0%
GGCAGTAAGCAATCTGAGAA+TGG - chr2_3:35196817-35196836 None:intergenic 45.0%
! GGTATTCATTCTGGAAGAGC+TGG + chr2_3:35197787-35197806 Msa0288990:CDS 45.0%
! TTCATTCTGGAAGAGCTGGA+AGG + chr2_3:35197791-35197810 Msa0288990:CDS 45.0%
GGAAGGTTGCTTCAGTCATA+TGG + chr2_3:35197808-35197827 Msa0288990:CDS 45.0%
AGGTTGCTTCAGTCATATGG+GGG + chr2_3:35197811-35197830 Msa0288990:CDS 45.0%
GGAAGGGTGGAAAATTGAGA+AGG - chr2_3:35197871-35197890 None:intergenic 45.0%
! TATACTGATTGCGGAATGCG+TGG + chr2_3:35198076-35198095 Msa0288990:intron 45.0%
! ATACTGATTGCGGAATGCGT+GGG + chr2_3:35198077-35198096 Msa0288990:intron 45.0%
GCTTTACAGCCTGTTTGCAT+TGG - chr2_3:35199038-35199057 None:intergenic 45.0%
CTGATGTTAGCATGGTTCCT+TGG - chr2_3:35199270-35199289 None:intergenic 45.0%
ATATGCCAAGAGATACTCCC+CGG + chr2_3:35199298-35199317 Msa0288990:CDS 45.0%
TGCAGACCTATAAAAGCCGA+AGG + chr2_3:35199361-35199380 Msa0288990:CDS 45.0%
AGACCTATAAAAGCCGAAGG+CGG + chr2_3:35199364-35199383 Msa0288990:CDS 45.0%
!! AATGGTGCTACATCTGCTAC+TGG + chr2_3:35199493-35199512 Msa0288990:CDS 45.0%
GGTCAATATCCTCCTATCCA+AGG + chr2_3:35199538-35199557 Msa0288990:CDS 45.0%
CAATATCCTCCTATCCAAGG+AGG + chr2_3:35199541-35199560 Msa0288990:CDS 45.0%
!! CACTTCCTAAGGAGGTATCT+TGG - chr2_3:35199594-35199613 None:intergenic 45.0%
GAAGTCTTCACTTCCTAAGG+AGG - chr2_3:35199602-35199621 None:intergenic 45.0%
!! GGATTATCGGGAGTATCAGA+CGG + chr2_3:35199652-35199671 Msa0288990:CDS 45.0%
GACTCATGCTATAATGGCTG+TGG - chr2_3:35199774-35199793 None:intergenic 45.0%
! TGTTTCTGAAAGTGGCGTCT+CGG + chr2_3:35199795-35199814 Msa0288990:CDS 45.0%
! AATGGTAGATGGGGTTTTCC+AGG + chr2_3:35199906-35199925 Msa0288990:CDS 45.0%
! ATGGTAGATGGGGTTTTCCA+GGG + chr2_3:35199907-35199926 Msa0288990:CDS 45.0%
TGCCATCTTCACAGGAAAGA+CGG - chr2_3:35199957-35199976 None:intergenic 45.0%
CGACAGTTGAAGCAAGTCAA+TGG - chr2_3:35199983-35200002 None:intergenic 45.0%
! ATTTTCTCGCTTCACCTGCA+AGG - chr2_3:35200040-35200059 None:intergenic 45.0%
TTACGTAATCCGTAGAGAGC+AGG - chr2_3:35200070-35200089 None:intergenic 45.0%
!! TTTGAATATTAAATAAAAAA+TGG - chr2_3:35199143-35199162 None:intergenic 5.0%
!!! GGAATGGGTTTTGAGGGTGA+TGG - chr2_3:35195849-35195868 None:intergenic 50.0%
! ACCACGATTTTGTCGTCGTC+TGG + chr2_3:35196752-35196771 Msa0288990:CDS 50.0%
TCCAGACGACGACAAAATCG+TGG - chr2_3:35196756-35196775 None:intergenic 50.0%
ATCGTCCACACCATCGAAGA+GGG + chr2_3:35196775-35196794 Msa0288990:CDS 50.0%
ATCGAAGAGGGTGAGGTCTT+CGG + chr2_3:35196787-35196806 Msa0288990:CDS 50.0%
AGCTGTCGTAAACGTCTTGC+TGG + chr2_3:35197733-35197752 Msa0288990:CDS 50.0%
GCTTTCTACGGCGCTCATTA+TGG - chr2_3:35197759-35197778 None:intergenic 50.0%
TTGATCCAACGGCCACCAAT+GGG - chr2_3:35197954-35197973 None:intergenic 50.0%
GGAATGCGTGGGATTTGTGA+CGG + chr2_3:35198088-35198107 Msa0288990:intron 50.0%
ACGTGTTCTTACCCCGATGA+AGG + chr2_3:35198426-35198445 Msa0288990:intron 50.0%
CGTGTTCTTACCCCGATGAA+GGG + chr2_3:35198427-35198446 Msa0288990:intron 50.0%
TCAGAAGATAAGACCTCGCC+GGG - chr2_3:35199319-35199338 None:intergenic 50.0%
CTCAGAAGATAAGACCTCGC+CGG - chr2_3:35199320-35199339 None:intergenic 50.0%
! GTTCCGCCTTCGGCTTTTAT+AGG - chr2_3:35199370-35199389 None:intergenic 50.0%
ATAAAAGCCGAAGGCGGAAC+CGG + chr2_3:35199370-35199389 Msa0288990:CDS 50.0%
GGAAACAGGGTTCTTGAACG+AGG - chr2_3:35199436-35199455 None:intergenic 50.0%
GAATTCGAGCCTCCTTGGAT+AGG - chr2_3:35199553-35199572 None:intergenic 50.0%
ATCCAAGGAGGCTCGAATTC+CGG + chr2_3:35199553-35199572 Msa0288990:CDS 50.0%
!! TTATCGGGAGTATCAGACGG+TGG + chr2_3:35199655-35199674 Msa0288990:CDS 50.0%
GCATGGGAATTCCTGTCGAT+TGG - chr2_3:35199726-35199745 None:intergenic 50.0%
CTATAATGGCTGTGGCTGCT+CGG - chr2_3:35199766-35199785 None:intergenic 50.0%
! TGGTAGATGGGGTTTTCCAG+GGG + chr2_3:35199908-35199927 Msa0288990:CDS 50.0%
GACCGTCTTTCCTGTGAAGA+TGG + chr2_3:35199952-35199971 Msa0288990:CDS 50.0%
AATGGTCGTGCCATCTTCAC+AGG - chr2_3:35199965-35199984 None:intergenic 50.0%
TTCAGCGTGTTGAGCATCAG+AGG + chr2_3:35200010-35200029 Msa0288990:CDS 50.0%
GATCGTCCACACCATCGAAG+AGG + chr2_3:35196774-35196793 Msa0288990:CDS 55.0%
GAAGACCTCACCCTCTTCGA+TGG - chr2_3:35196788-35196807 None:intergenic 55.0%
CGCCGTAGAAAGCCACAAGT+TGG + chr2_3:35197766-35197785 Msa0288990:CDS 55.0%
! ATTAGCCCATTGGTGGCCGT+TGG + chr2_3:35197946-35197965 Msa0288990:intron 55.0%
CTTGATCCAACGGCCACCAA+TGG - chr2_3:35197955-35197974 None:intergenic 55.0%
CAGAAGATAAGACCTCGCCG+GGG - chr2_3:35199318-35199337 None:intergenic 55.0%
! CCTAAAACCGGTTCCGCCTT+CGG - chr2_3:35199380-35199399 None:intergenic 55.0%
TTCGAGCCTCCTTGGATAGG+AGG - chr2_3:35199550-35199569 None:intergenic 55.0%
ATCCGGAATTCGAGCCTCCT+TGG - chr2_3:35199558-35199577 None:intergenic 55.0%
TCGACAGGAATTCCCATGCC+TGG + chr2_3:35199727-35199746 Msa0288990:CDS 55.0%
CTGAAAGTGGCGTCTCGGAT+AGG + chr2_3:35199800-35199819 Msa0288990:CDS 55.0%
! AGATGGGGTTTTCCAGGGGT+CGG + chr2_3:35199912-35199931 Msa0288990:CDS 55.0%
CGTTGACAAAATCCGACCCC+TGG - chr2_3:35199927-35199946 None:intergenic 55.0%
CCAGTCACAACAAGCTGCAC+AGG - chr2_3:35200508-35200527 None:intergenic 55.0%
!! CCTGTGCAGCTTGTTGTGAC+TGG + chr2_3:35200505-35200524 Msa0288990:three_prime_UTR 55.0%
CTCGTGAAGCTGACCAATGG+CGG + chr2_3:35200632-35200651 Msa0288990:three_prime_UTR 55.0%
CCTCACCCTCTTCGATGGTG+TGG - chr2_3:35196783-35196802 None:intergenic 60.0%
CCACACCATCGAAGAGGGTG+AGG + chr2_3:35196780-35196799 Msa0288990:CDS 60.0%
!! CCGAAGGCGGAACCGGTTTT+AGG + chr2_3:35199377-35199396 Msa0288990:CDS 60.0%
!! GCATCAGAGGCTAGCCTTGC+AGG + chr2_3:35200023-35200042 Msa0288990:CDS 60.0%
CGGCTCGTGAAGCTGACCAA+TGG + chr2_3:35200629-35200648 Msa0288990:three_prime_UTR 60.0%
TGAAGCTGACCAATGGCGGC+TGG + chr2_3:35200636-35200655 Msa0288990:three_prime_UTR 60.0%
GAAGCTGACCAATGGCGGCT+GGG + chr2_3:35200637-35200656 Msa0288990:three_prime_UTR 60.0%
TATTGCGTCCCAGCCGCCAT+TGG - chr2_3:35200648-35200667 None:intergenic 60.0%
!! CCTCGCCGGGGAGTATCTCT+TGG - chr2_3:35199306-35199325 None:intergenic 65.0%
CCAAGAGATACTCCCCGGCG+AGG + chr2_3:35199303-35199322 Msa0288990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 35195815 35200980 35195815 ID=Msa0288990;Name=Msa0288990
chr2_3 mRNA 35195815 35200980 35195815 ID=Msa0288990-mRNA-1;Parent=Msa0288990;Name=Msa0288990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=505|1|1|1|0.66|0.75|4|503|540
chr2_3 exon 35195815 35196972 35195815 ID=Msa0288990-mRNA-1:exon:11360;Parent=Msa0288990-mRNA-1
chr2_3 exon 35197696 35197832 35197696 ID=Msa0288990-mRNA-1:exon:11361;Parent=Msa0288990-mRNA-1
chr2_3 exon 35199257 35200103 35199257 ID=Msa0288990-mRNA-1:exon:11362;Parent=Msa0288990-mRNA-1
chr2_3 exon 35200492 35200980 35200492 ID=Msa0288990-mRNA-1:exon:11363;Parent=Msa0288990-mRNA-1
chr2_3 five_prime_UTR 35195815 35196319 35195815 ID=Msa0288990-mRNA-1:five_prime_utr;Parent=Msa0288990-mRNA-1
chr2_3 CDS 35196320 35196972 35196320 ID=Msa0288990-mRNA-1:cds;Parent=Msa0288990-mRNA-1
chr2_3 CDS 35197696 35197832 35197696 ID=Msa0288990-mRNA-1:cds;Parent=Msa0288990-mRNA-1
chr2_3 CDS 35199257 35200089 35199257 ID=Msa0288990-mRNA-1:cds;Parent=Msa0288990-mRNA-1
chr2_3 three_prime_UTR 35200090 35200103 35200090 ID=Msa0288990-mRNA-1:three_prime_utr;Parent=Msa0288990-mRNA-1
chr2_3 three_prime_UTR 35200492 35200980 35200492 ID=Msa0288990-mRNA-1:three_prime_utr;Parent=Msa0288990-mRNA-1
Gene Sequence

>Msa0288990

ATGGAGTCATGGAGTTTTGATCCTCAAGATAAAGGGTATGTTTCAAATGACACACTTGGTAGTAGAAACAAAGGTTCAATCTTGAGTTGGGATTTGAAAACCCCATCTAGTTTTTTACCTCAACAAAACATAGAAAATGACAACAATAATCAAGGTTTTGAGGAATTGGGTTTTCATGGTATGTTGGGAAAACAATTGTCTAATGTTGTTGATGATGATGATGTTGATGTTGTTGTTGGTAACAAAATTGTCACTAGTAGTTCTTTTGTTATGGCTGCACCAAATGCATTTTCAGAAAGAGAACAACAACACTTCAATTCCAAGCATTCAAACTCAATAGGTGACACTAATAGTTCTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATAGAGATGGAATTGATACACCATTTTCAAAGGGTACCACGATTTTGTCGTCGTCTGGATCGTCCACACCATCGAAGAGGGTGAGGTCTTCGGCAGTCCATTCTCAGATTGCTTACTGCCAAGTATATGGATGTAATAAGGATTTGAGTGGTTGTAAAGATTATCACAAGAGGCACAAAGTTTGTGAAGTTCATTCAAAGACTTCTAAAGTAATAGTGAATGGAATTGAACAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCTGGCCATAATGAGCGCCGTAGAAAGCCACAAGTTGGTATTCATTCTGGAAGAGCTGGAAGGTTGCTTCAGTCATATGGGGATAGCAGATTCCAAGGAACCATGCTAACATCAGCATCTTTTATATGCCAAGAGATACTCCCCGGCGAGGTCTTATCTTCTGAGAAATGTGGAAATAGTAACTGGTGCAGACCTATAAAAGCCGAAGGCGGAACCGGTTTTAGGCCTCTTTCTTCTATTCCAATTATAAATGCACATCCTCGTTCAAGAACCCTGTTTCCTTCGTACAACAATAAACAATTTCCTTTTCTTCAAGAAAATGGTGCTACATCTGCTACTGGAAGCATCTTCTGTGAAAACAATGGTCAATATCCTCCTATCCAAGGAGGCTCGAATTCCGGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGTGAAGACTTCAATGTTTTTGAAACAGAATCAGCTGTTCAAGGATTATCGGGAGTATCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAACCAATCGACAGGAATTCCCATGCCTGGTCATTTAGTTATTCCGAGCAGCCACAGCCATTATAGCATGAGTCATGTTTCTGAAAGTGGCGTCTCGGATAGGTTTCCGTCTGAGTTAAATCATACAGATGGAAGTCATCTTAGTCCTATATTGATATCAAACAGTAATGAAATCGCCCATTTTCAAATGGTAGATGGGGTTTTCCAGGGGTCGGATTTTGTCAACGTGAAAGACCGTCTTTCCTGTGAAGATGGCACGACCATTGACTTGCTTCAACTGTCGTCACAACTTCAGCGTGTTGAGCATCAGAGGCTAGCCTTGCAGGTGAAGCGAGAAAATGATTCTTCCTGCTCTCTACGGATTACGTAA
Protein sequence

>Msa0288990

MESWSFDPQDKGYVSNDTLGSRNKGSILSWDLKTPSSFLPQQNIENDNNNQGFEELGFHGMLGKQLSNVVDDDDVDVVVGNKIVTSSSFVMAAPNAFSEREQQHFNSKHSNSIGDTNSSNSLIDLKLGRFGDHRDGIDTPFSKGTTILSSSGSSTPSKRVRSSAVHSQIAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYGDSRFQGTMLTSASFICQEILPGEVLSSEKCGNSNWCRPIKAEGGTGFRPLSSIPIINAHPRSRTLFPSYNNKQFPFLQENGATSATGSIFCENNGQYPPIQGGSNSGSQSLFQDTSLGSEDFNVFETESAVQGLSGVSDGGCALSLLSSQSQNSSNQSTGIPMPGHLVIPSSHSHYSMSHVSESGVSDRFPSELNHTDGSHLSPILISNSNEIAHFQMVDGVFQGSDFVNVKDRLSCEDGTTIDLLQLSSQLQRVEHQRLALQVKRENDSSCSLRIT*