Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289160 | KEH19588.1 | 57.724 | 123 | 36 | 2 | 33 | 140 | 2 | 123 | 3.18e-33 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289160 | sp|P23437|CDK2_XENLA | 41.135 | 141 | 59 | 5 | 13 | 136 | 13 | 146 | 2.01e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289160 | A0A072TRV9 | 57.724 | 123 | 36 | 2 | 33 | 140 | 2 | 123 | 1.52e-33 | 124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289160 | MtrunA17_Chr4g0051261 | 36.842 | 152 | 75 | 4 | 1 | 136 | 1 | 147 | 9.56e-22 | 88.2 |
| Msa0289160 | MtrunA17_Chr2g0293491 | 37.097 | 124 | 56 | 4 | 29 | 136 | 30 | 147 | 4.36e-21 | 86.3 |
| Msa0289160 | MtrunA17_Chr8g0360761 | 63.492 | 63 | 22 | 1 | 33 | 95 | 2 | 63 | 1.91e-17 | 74.7 |
| Msa0289160 | MtrunA17_Chr1g0187371 | 31.206 | 141 | 71 | 4 | 13 | 129 | 27 | 165 | 4.75e-17 | 75.9 |
| Msa0289160 | MtrunA17_Chr8g0358921 | 37.580 | 157 | 69 | 7 | 1 | 136 | 47 | 195 | 4.90e-16 | 73.2 |
| Msa0289160 | MtrunA17_Chr3g0099951 | 35.659 | 129 | 61 | 4 | 24 | 136 | 35 | 157 | 9.61e-15 | 69.7 |
| Msa0289160 | MtrunA17_Chr5g0432491 | 31.008 | 129 | 66 | 5 | 24 | 136 | 44 | 165 | 1.92e-13 | 66.2 |
| Msa0289160 | MtrunA17_Chr4g0002001 | 30.719 | 153 | 71 | 4 | 1 | 120 | 1 | 151 | 2.50e-13 | 65.5 |
| Msa0289160 | MtrunA17_Chr4g0040141 | 32.836 | 134 | 65 | 6 | 23 | 136 | 144 | 272 | 5.05e-13 | 65.1 |
| Msa0289160 | MtrunA17_Chr7g0244521 | 31.746 | 126 | 66 | 4 | 25 | 136 | 34 | 153 | 1.56e-12 | 63.5 |
| Msa0289160 | MtrunA17_Chr1g0205421 | 30.534 | 131 | 69 | 5 | 24 | 139 | 33 | 156 | 4.76e-12 | 62.0 |
| Msa0289160 | MtrunA17_Chr2g0284031 | 32.520 | 123 | 61 | 5 | 29 | 136 | 57 | 172 | 5.09e-12 | 62.0 |
| Msa0289160 | MtrunA17_Chr8g0346071 | 32.308 | 130 | 63 | 6 | 24 | 136 | 38 | 159 | 1.18e-11 | 60.8 |
| Msa0289160 | MtrunA17_Chr4g0001331 | 31.148 | 122 | 64 | 4 | 29 | 136 | 46 | 161 | 1.43e-11 | 60.8 |
| Msa0289160 | MtrunA17_Chr5g0428031 | 30.233 | 129 | 67 | 5 | 24 | 136 | 30 | 151 | 1.58e-11 | 60.5 |
| Msa0289160 | MtrunA17_Chr5g0441011 | 29.457 | 129 | 68 | 5 | 24 | 136 | 34 | 155 | 2.24e-11 | 60.1 |
| Msa0289160 | MtrunA17_Chr6g0483151 | 34.043 | 141 | 68 | 6 | 13 | 136 | 23 | 155 | 2.69e-11 | 60.1 |
| Msa0289160 | MtrunA17_Chr1g0150321 | 34.259 | 108 | 50 | 4 | 44 | 136 | 53 | 154 | 4.18e-11 | 59.3 |
| Msa0289160 | MtrunA17_Chr3g0093571 | 27.778 | 144 | 66 | 6 | 24 | 136 | 46 | 182 | 5.24e-11 | 59.3 |
| Msa0289160 | MtrunA17_Chr2g0304111 | 31.008 | 129 | 66 | 5 | 24 | 136 | 44 | 165 | 6.40e-11 | 58.9 |
| Msa0289160 | MtrunA17_Chr3g0132671 | 32.110 | 109 | 54 | 4 | 48 | 141 | 93 | 196 | 6.42e-11 | 58.9 |
| Msa0289160 | MtrunA17_Chr1g0201571 | 28.289 | 152 | 81 | 7 | 13 | 142 | 135 | 280 | 8.28e-11 | 58.5 |
| Msa0289160 | MtrunA17_Chr1g0188031 | 26.950 | 141 | 81 | 4 | 13 | 136 | 29 | 164 | 8.94e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289160 | AT3G48750.1 | 37.097 | 124 | 56 | 4 | 29 | 136 | 30 | 147 | 4.69e-21 | 86.7 |
| Msa0289160 | AT1G76540.1 | 35.606 | 132 | 59 | 4 | 13 | 120 | 23 | 152 | 6.36e-18 | 78.6 |
| Msa0289160 | AT1G20930.1 | 34.028 | 144 | 69 | 4 | 1 | 120 | 13 | 154 | 3.50e-17 | 76.6 |
| Msa0289160 | AT2G38620.3 | 31.373 | 153 | 70 | 6 | 1 | 120 | 1 | 151 | 2.74e-15 | 70.5 |
| Msa0289160 | AT2G38620.1 | 31.373 | 153 | 70 | 6 | 1 | 120 | 1 | 151 | 2.74e-15 | 70.5 |
| Msa0289160 | AT2G38620.2 | 31.373 | 153 | 70 | 6 | 1 | 120 | 1 | 151 | 5.50e-15 | 70.5 |
| Msa0289160 | AT3G54180.1 | 29.825 | 171 | 84 | 5 | 1 | 140 | 1 | 166 | 6.25e-15 | 70.1 |
| Msa0289160 | AT5G25110.1 | 36.719 | 128 | 57 | 7 | 25 | 136 | 65 | 184 | 8.48e-14 | 67.4 |
| Msa0289160 | AT5G39440.1 | 32.624 | 141 | 71 | 6 | 13 | 136 | 28 | 161 | 9.90e-13 | 64.7 |
| Msa0289160 | AT4G14580.1 | 32.812 | 128 | 64 | 5 | 25 | 136 | 43 | 164 | 9.98e-13 | 64.3 |
| Msa0289160 | AT1G66750.1 | 35.461 | 141 | 66 | 6 | 13 | 136 | 22 | 154 | 1.06e-12 | 64.3 |
| Msa0289160 | AT4G24400.1 | 32.558 | 129 | 64 | 5 | 24 | 136 | 30 | 151 | 1.38e-12 | 63.9 |
| Msa0289160 | AT4G24400.2 | 32.558 | 129 | 64 | 5 | 24 | 136 | 30 | 151 | 1.40e-12 | 63.9 |
| Msa0289160 | AT3G01090.3 | 32.867 | 143 | 70 | 7 | 12 | 136 | 27 | 161 | 3.43e-12 | 63.2 |
| Msa0289160 | AT3G01090.1 | 32.867 | 143 | 70 | 7 | 12 | 136 | 27 | 161 | 3.43e-12 | 63.2 |
| Msa0289160 | AT3G01090.2 | 32.867 | 143 | 70 | 7 | 12 | 136 | 50 | 184 | 3.56e-12 | 62.8 |
| Msa0289160 | AT5G21326.1 | 30.233 | 129 | 67 | 5 | 24 | 136 | 34 | 155 | 6.39e-12 | 62.0 |
| Msa0289160 | AT2G30360.1 | 31.818 | 132 | 62 | 5 | 24 | 136 | 42 | 164 | 6.43e-12 | 62.0 |
| Msa0289160 | AT2G26980.1 | 31.008 | 129 | 66 | 5 | 24 | 136 | 35 | 156 | 6.47e-12 | 62.0 |
| Msa0289160 | AT2G26980.3 | 31.008 | 129 | 66 | 5 | 24 | 136 | 35 | 156 | 6.91e-12 | 62.0 |
| Msa0289160 | AT2G26980.5 | 31.008 | 129 | 66 | 5 | 24 | 136 | 35 | 156 | 7.45e-12 | 62.0 |
| Msa0289160 | AT2G26980.4 | 31.008 | 129 | 66 | 5 | 24 | 136 | 45 | 166 | 7.96e-12 | 62.0 |
| Msa0289160 | AT2G26980.2 | 31.008 | 129 | 66 | 5 | 24 | 136 | 35 | 156 | 8.72e-12 | 61.2 |
| Msa0289160 | AT4G18700.1 | 32.520 | 123 | 61 | 5 | 29 | 136 | 52 | 167 | 9.73e-12 | 61.6 |
| Msa0289160 | AT2G38490.1 | 29.787 | 141 | 74 | 6 | 13 | 136 | 37 | 169 | 1.09e-11 | 61.6 |
| Msa0289160 | AT5G01810.1 | 31.206 | 141 | 72 | 7 | 13 | 136 | 21 | 153 | 1.22e-11 | 61.2 |
| Msa0289160 | AT5G01810.2 | 31.206 | 141 | 72 | 7 | 13 | 136 | 21 | 153 | 1.22e-11 | 61.2 |
| Msa0289160 | AT5G01810.3 | 31.206 | 141 | 72 | 7 | 13 | 136 | 21 | 153 | 1.45e-11 | 61.2 |
| Msa0289160 | AT1G18040.1 | 33.871 | 124 | 58 | 5 | 29 | 136 | 38 | 153 | 1.61e-11 | 60.8 |
| Msa0289160 | AT1G29230.1 | 31.250 | 128 | 66 | 5 | 24 | 136 | 95 | 215 | 2.90e-11 | 60.5 |
| Msa0289160 | AT2G34180.1 | 32.283 | 127 | 64 | 5 | 25 | 136 | 79 | 198 | 3.50e-11 | 60.1 |
| Msa0289160 | AT5G35410.1 | 31.008 | 129 | 66 | 5 | 24 | 136 | 32 | 153 | 6.63e-11 | 59.3 |
| Msa0289160 | AT5G35410.2 | 31.008 | 129 | 66 | 5 | 24 | 136 | 32 | 153 | 6.90e-11 | 59.3 |
| Msa0289160 | AT5G63370.9 | 33.793 | 145 | 70 | 6 | 13 | 136 | 172 | 311 | 7.37e-11 | 58.9 |
| Msa0289160 | AT5G01820.1 | 33.028 | 109 | 55 | 4 | 25 | 118 | 44 | 149 | 8.10e-11 | 58.9 |
| Msa0289160 | AT5G63370.2 | 33.548 | 155 | 75 | 7 | 5 | 136 | 162 | 311 | 9.53e-11 | 58.9 |
| Msa0289160 | AT5G63370.3 | 33.548 | 155 | 75 | 7 | 5 | 136 | 162 | 311 | 9.53e-11 | 58.9 |
Find 23 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGACCTAACAATATTAT+TGG | 0.196251 | 2_3:+35419050 | None:intergenic |
| GCTTTCTGCACTTCAAAATA+TGG | 0.247648 | 2_3:+35419195 | None:intergenic |
| TTGGAACTCCATTCAATATC+TGG | 0.265843 | 2_3:+35419118 | None:intergenic |
| ACTGAAGCCAGAATATTATT+AGG | 0.269823 | 2_3:+35418436 | None:intergenic |
| TCTGAAACCTAATAATATTC+TGG | 0.322462 | 2_3:-35418443 | Msa0289160:CDS |
| CAGAAAGCTTTCTACGAATC+AGG | 0.346241 | 2_3:-35419180 | Msa0289160:CDS |
| ATTGACCTAACAATATTATT+GGG | 0.362616 | 2_3:+35419051 | None:intergenic |
| AAGTGAAGTTATCTGACTTT+TGG | 0.411119 | 2_3:-35418393 | Msa0289160:CDS |
| ACCATCCCAATAATATTGTT+AGG | 0.414565 | 2_3:-35419056 | Msa0289160:intron |
| TTGAATGGGAAGAATCTTGA+TGG | 0.417517 | 2_3:+35419146 | None:intergenic |
| GCGTCAAGTCAAGCTCTCTC+TGG | 0.449149 | 2_3:-35418505 | Msa0289160:intron |
| CAAGAAAACCAGATATTGAA+TGG | 0.476194 | 2_3:-35419126 | Msa0289160:CDS |
| ACCTAACAATATTATTGGGA+TGG | 0.502721 | 2_3:+35419055 | None:intergenic |
| ACCAGATGAAGGACAAAGGT+TGG | 0.520281 | 2_3:-35419219 | Msa0289160:intron |
| AAGTCAAGCTCTCTCTGGAT+TGG | 0.528574 | 2_3:-35418500 | Msa0289160:CDS |
| CCAGATGAAGGACAAAGGTT+GGG | 0.529638 | 2_3:-35419218 | Msa0289160:intron |
| ATACGATTCAAAATGCTGCT+TGG | 0.536667 | 2_3:+35419099 | None:intergenic |
| CTCTCTCTCAATGGAAACAG+AGG | 0.548263 | 2_3:-35419501 | None:intergenic |
| CAATACCAGATGAAGGACAA+AGG | 0.598590 | 2_3:-35419223 | Msa0289160:intron |
| ATACAGATTGCAGACAGTGA+TGG | 0.599652 | 2_3:-35418941 | Msa0289160:intron |
| TAACATCTCATCACTGCGTG+AGG | 0.646214 | 2_3:+35418860 | None:intergenic |
| ATGGAAACAGAGGAAGAACA+AGG | 0.659811 | 2_3:-35419491 | Msa0289160:CDS |
| GCAGACAGTGATGGAAACTG+AGG | 0.727262 | 2_3:-35418932 | Msa0289160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTTGATAATTAAT+AGG | - | chr2_3:35419264-35419283 | Msa0289160:intron | 10.0% |
| !!! | TTGAAATTTGATAATTAATA+GGG | - | chr2_3:35419265-35419284 | Msa0289160:intron | 10.0% |
| !!! | ATTGAAATTTGATAATTAAT+AGG | - | chr2_3:35419264-35419283 | Msa0289160:intron | 10.0% |
| !!! | TTGAAATTTGATAATTAATA+GGG | - | chr2_3:35419265-35419284 | Msa0289160:intron | 10.0% |
| !! | ATTGACCTAACAATATTATT+GGG | + | chr2_3:35418818-35418837 | None:intergenic | 20.0% |
| !! | ATCAAAAGTGAAAATCAAAA+TGG | + | chr2_3:35419246-35419265 | None:intergenic | 20.0% |
| !!! | TTGATAATTAATAGGGTAAT+AGG | - | chr2_3:35419272-35419291 | Msa0289160:intron | 20.0% |
| !! | TGATAATTAATAGGGTAATA+GGG | - | chr2_3:35419273-35419292 | Msa0289160:intron | 20.0% |
| !! | ATTGACCTAACAATATTATT+GGG | + | chr2_3:35418818-35418837 | None:intergenic | 20.0% |
| !! | ATCAAAAGTGAAAATCAAAA+TGG | + | chr2_3:35419246-35419265 | None:intergenic | 20.0% |
| !!! | TTGATAATTAATAGGGTAAT+AGG | - | chr2_3:35419272-35419291 | Msa0289160:intron | 20.0% |
| !! | TGATAATTAATAGGGTAATA+GGG | - | chr2_3:35419273-35419292 | Msa0289160:intron | 20.0% |
| !! | TTCATCTGGTATTGAAAATT+GGG | + | chr2_3:35418637-35418656 | None:intergenic | 25.0% |
| !!! | AATATCTGGTTTTCTTGAAT+GGG | + | chr2_3:35418737-35418756 | None:intergenic | 25.0% |
| ! | GATTGACCTAACAATATTAT+TGG | + | chr2_3:35418819-35418838 | None:intergenic | 25.0% |
| ! | GAGATGAAATTAAAGAATGA+AGG | + | chr2_3:35418847-35418866 | None:intergenic | 25.0% |
| ! | TGTTAATCAACATTCAAGAT+CGG | - | chr2_3:35419024-35419043 | Msa0289160:intron | 25.0% |
| !!! | TATCTTTGTTTTCAACATGA+TGG | - | chr2_3:35419120-35419139 | Msa0289160:CDS | 25.0% |
| !! | AAATCTTTTAGTGCAAGAAA+AGG | - | chr2_3:35419185-35419204 | Msa0289160:CDS | 25.0% |
| ! | GGTATATTAGCTAAGTAATA+GGG | - | chr2_3:35419294-35419313 | Msa0289160:intron | 25.0% |
| !! | TCTGAAACCTAATAATATTC+TGG | - | chr2_3:35419423-35419442 | Msa0289160:intron | 25.0% |
| !! | TTCATCTGGTATTGAAAATT+GGG | + | chr2_3:35418637-35418656 | None:intergenic | 25.0% |
| !!! | AATATCTGGTTTTCTTGAAT+GGG | + | chr2_3:35418737-35418756 | None:intergenic | 25.0% |
| ! | GATTGACCTAACAATATTAT+TGG | + | chr2_3:35418819-35418838 | None:intergenic | 25.0% |
| ! | GAGATGAAATTAAAGAATGA+AGG | + | chr2_3:35418847-35418866 | None:intergenic | 25.0% |
| ! | TGTTAATCAACATTCAAGAT+CGG | - | chr2_3:35419024-35419043 | Msa0289160:intron | 25.0% |
| !!! | TATCTTTGTTTTCAACATGA+TGG | - | chr2_3:35419120-35419139 | Msa0289160:CDS | 25.0% |
| !! | AAATCTTTTAGTGCAAGAAA+AGG | - | chr2_3:35419185-35419204 | Msa0289160:CDS | 25.0% |
| ! | GGTATATTAGCTAAGTAATA+GGG | - | chr2_3:35419294-35419313 | Msa0289160:intron | 25.0% |
| !! | TCTGAAACCTAATAATATTC+TGG | - | chr2_3:35419423-35419442 | Msa0289160:intron | 25.0% |
| TGATGCTGAGTAATGAAATT+TGG | + | chr2_3:35418423-35418442 | None:intergenic | 30.0% | |
| AATTGAAACTCTACAGTTTC+TGG | + | chr2_3:35418449-35418468 | None:intergenic | 30.0% | |
| AGATCTTGCTTGAACAAAAA+AGG | + | chr2_3:35418484-35418503 | None:intergenic | 30.0% | |
| ! | CTTCATCTGGTATTGAAAAT+TGG | + | chr2_3:35418638-35418657 | None:intergenic | 30.0% |
| ! | CAATTTTCAATACCAGATGA+AGG | - | chr2_3:35418636-35418655 | Msa0289160:intron | 30.0% |
| !!! | CAATATCTGGTTTTCTTGAA+TGG | + | chr2_3:35418738-35418757 | None:intergenic | 30.0% |
| CAAGAAAACCAGATATTGAA+TGG | - | chr2_3:35418740-35418759 | Msa0289160:intron | 30.0% | |
| ACCATCCCAATAATATTGTT+AGG | - | chr2_3:35418810-35418829 | Msa0289160:intron | 30.0% | |
| ACCTAACAATATTATTGGGA+TGG | + | chr2_3:35418814-35418833 | None:intergenic | 30.0% | |
| CATACATATACATCACGTTA+GGG | + | chr2_3:35418890-35418909 | None:intergenic | 30.0% | |
| ACATACATATACATCACGTT+AGG | + | chr2_3:35418891-35418910 | None:intergenic | 30.0% | |
| GTTAATCAACATTCAAGATC+GGG | - | chr2_3:35419025-35419044 | Msa0289160:intron | 30.0% | |
| GGGTATATTAGCTAAGTAAT+AGG | - | chr2_3:35419293-35419312 | Msa0289160:intron | 30.0% | |
| ! | TGTGTAGAATTTTGTGAGTA+TGG | + | chr2_3:35419399-35419418 | None:intergenic | 30.0% |
| ACTGAAGCCAGAATATTATT+AGG | + | chr2_3:35419433-35419452 | None:intergenic | 30.0% | |
| ! | AAGTGAAGTTATCTGACTTT+TGG | - | chr2_3:35419473-35419492 | Msa0289160:intron | 30.0% |
| TGATGCTGAGTAATGAAATT+TGG | + | chr2_3:35418423-35418442 | None:intergenic | 30.0% | |
| AATTGAAACTCTACAGTTTC+TGG | + | chr2_3:35418449-35418468 | None:intergenic | 30.0% | |
| AGATCTTGCTTGAACAAAAA+AGG | + | chr2_3:35418484-35418503 | None:intergenic | 30.0% | |
| ! | CTTCATCTGGTATTGAAAAT+TGG | + | chr2_3:35418638-35418657 | None:intergenic | 30.0% |
| ! | CAATTTTCAATACCAGATGA+AGG | - | chr2_3:35418636-35418655 | Msa0289160:intron | 30.0% |
| !!! | CAATATCTGGTTTTCTTGAA+TGG | + | chr2_3:35418738-35418757 | None:intergenic | 30.0% |
| CAAGAAAACCAGATATTGAA+TGG | - | chr2_3:35418740-35418759 | Msa0289160:intron | 30.0% | |
| ACCATCCCAATAATATTGTT+AGG | - | chr2_3:35418810-35418829 | Msa0289160:intron | 30.0% | |
| ACCTAACAATATTATTGGGA+TGG | + | chr2_3:35418814-35418833 | None:intergenic | 30.0% | |
| CATACATATACATCACGTTA+GGG | + | chr2_3:35418890-35418909 | None:intergenic | 30.0% | |
| ACATACATATACATCACGTT+AGG | + | chr2_3:35418891-35418910 | None:intergenic | 30.0% | |
| GTTAATCAACATTCAAGATC+GGG | - | chr2_3:35419025-35419044 | Msa0289160:intron | 30.0% | |
| GGGTATATTAGCTAAGTAAT+AGG | - | chr2_3:35419293-35419312 | Msa0289160:intron | 30.0% | |
| ! | TGTGTAGAATTTTGTGAGTA+TGG | + | chr2_3:35419399-35419418 | None:intergenic | 30.0% |
| ACTGAAGCCAGAATATTATT+AGG | + | chr2_3:35419433-35419452 | None:intergenic | 30.0% | |
| ! | AAGTGAAGTTATCTGACTTT+TGG | - | chr2_3:35419473-35419492 | Msa0289160:intron | 30.0% |
| GCTTTCTGCACTTCAAAATA+TGG | + | chr2_3:35418674-35418693 | None:intergenic | 35.0% | |
| TTGAATGGGAAGAATCTTGA+TGG | + | chr2_3:35418723-35418742 | None:intergenic | 35.0% | |
| TTGGAACTCCATTCAATATC+TGG | + | chr2_3:35418751-35418770 | None:intergenic | 35.0% | |
| ATACGATTCAAAATGCTGCT+TGG | + | chr2_3:35418770-35418789 | None:intergenic | 35.0% | |
| ! | AAGTTATCTGACTTTTGGTG+CGG | - | chr2_3:35419478-35419497 | Msa0289160:intron | 35.0% |
| GCTTTCTGCACTTCAAAATA+TGG | + | chr2_3:35418674-35418693 | None:intergenic | 35.0% | |
| TTGAATGGGAAGAATCTTGA+TGG | + | chr2_3:35418723-35418742 | None:intergenic | 35.0% | |
| TTGGAACTCCATTCAATATC+TGG | + | chr2_3:35418751-35418770 | None:intergenic | 35.0% | |
| ATACGATTCAAAATGCTGCT+TGG | + | chr2_3:35418770-35418789 | None:intergenic | 35.0% | |
| ! | AAGTTATCTGACTTTTGGTG+CGG | - | chr2_3:35419478-35419497 | Msa0289160:intron | 35.0% |
| ATGGAAACAGAGGAAGAACA+AGG | - | chr2_3:35418375-35418394 | Msa0289160:CDS | 40.0% | |
| CAATACCAGATGAAGGACAA+AGG | - | chr2_3:35418643-35418662 | Msa0289160:intron | 40.0% | |
| CAGAAAGCTTTCTACGAATC+AGG | - | chr2_3:35418686-35418705 | Msa0289160:intron | 40.0% | |
| ATACAGATTGCAGACAGTGA+TGG | - | chr2_3:35418925-35418944 | Msa0289160:CDS | 40.0% | |
| GGGTATATTAGATGCAAGCA+AGG | - | chr2_3:35419314-35419333 | Msa0289160:intron | 40.0% | |
| ! | CTTGACTTGACGCAGAAAAA+TGG | + | chr2_3:35419354-35419373 | None:intergenic | 40.0% |
| ATGGAAACAGAGGAAGAACA+AGG | - | chr2_3:35418375-35418394 | Msa0289160:CDS | 40.0% | |
| CAATACCAGATGAAGGACAA+AGG | - | chr2_3:35418643-35418662 | Msa0289160:intron | 40.0% | |
| CAGAAAGCTTTCTACGAATC+AGG | - | chr2_3:35418686-35418705 | Msa0289160:intron | 40.0% | |
| ATACAGATTGCAGACAGTGA+TGG | - | chr2_3:35418925-35418944 | Msa0289160:CDS | 40.0% | |
| GGGTATATTAGATGCAAGCA+AGG | - | chr2_3:35419314-35419333 | Msa0289160:intron | 40.0% | |
| ! | CTTGACTTGACGCAGAAAAA+TGG | + | chr2_3:35419354-35419373 | None:intergenic | 40.0% |
| ACCAGATGAAGGACAAAGGT+TGG | - | chr2_3:35418647-35418666 | Msa0289160:intron | 45.0% | |
| CCAGATGAAGGACAAAGGTT+GGG | - | chr2_3:35418648-35418667 | Msa0289160:intron | 45.0% | |
| TAACATCTCATCACTGCGTG+AGG | + | chr2_3:35419009-35419028 | None:intergenic | 45.0% | |
| AAGTCAAGCTCTCTCTGGAT+TGG | - | chr2_3:35419366-35419385 | Msa0289160:intron | 45.0% | |
| ACCAGATGAAGGACAAAGGT+TGG | - | chr2_3:35418647-35418666 | Msa0289160:intron | 45.0% | |
| CCAGATGAAGGACAAAGGTT+GGG | - | chr2_3:35418648-35418667 | Msa0289160:intron | 45.0% | |
| TAACATCTCATCACTGCGTG+AGG | + | chr2_3:35419009-35419028 | None:intergenic | 45.0% | |
| AAGTCAAGCTCTCTCTGGAT+TGG | - | chr2_3:35419366-35419385 | Msa0289160:intron | 45.0% | |
| CCCAACCTTTGTCCTTCATC+TGG | + | chr2_3:35418651-35418670 | None:intergenic | 50.0% | |
| ! | GCAGACAGTGATGGAAACTG+AGG | - | chr2_3:35418934-35418953 | Msa0289160:CDS | 50.0% |
| CCCAACCTTTGTCCTTCATC+TGG | + | chr2_3:35418651-35418670 | None:intergenic | 50.0% | |
| ! | GCAGACAGTGATGGAAACTG+AGG | - | chr2_3:35418934-35418953 | Msa0289160:CDS | 50.0% |
| GCGTCAAGTCAAGCTCTCTC+TGG | - | chr2_3:35419361-35419380 | Msa0289160:intron | 55.0% | |
| GCGTCAAGTCAAGCTCTCTC+TGG | - | chr2_3:35419361-35419380 | Msa0289160:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 35418375 | 35419513 | 35418375 | ID=Msa0289160;Name=Msa0289160 |
| chr2_3 | mRNA | 35418375 | 35419513 | 35418375 | ID=Msa0289160-mRNA-1;Parent=Msa0289160;Name=Msa0289160-mRNA-1;_AED=0.42;_eAED=0.47;_QI=0|0|0|0.75|0.66|0.5|4|0|142 |
| chr2_3 | exon | 35419488 | 35419513 | 35419488 | ID=Msa0289160-mRNA-1:exon:11469;Parent=Msa0289160-mRNA-1 |
| chr2_3 | exon | 35419057 | 35419230 | 35419057 | ID=Msa0289160-mRNA-1:exon:11468;Parent=Msa0289160-mRNA-1 |
| chr2_3 | exon | 35418874 | 35418957 | 35418874 | ID=Msa0289160-mRNA-1:exon:11467;Parent=Msa0289160-mRNA-1 |
| chr2_3 | exon | 35418375 | 35418519 | 35418375 | ID=Msa0289160-mRNA-1:exon:11466;Parent=Msa0289160-mRNA-1 |
| chr2_3 | CDS | 35419488 | 35419513 | 35419488 | ID=Msa0289160-mRNA-1:cds;Parent=Msa0289160-mRNA-1 |
| chr2_3 | CDS | 35419057 | 35419230 | 35419057 | ID=Msa0289160-mRNA-1:cds;Parent=Msa0289160-mRNA-1 |
| chr2_3 | CDS | 35418874 | 35418957 | 35418874 | ID=Msa0289160-mRNA-1:cds;Parent=Msa0289160-mRNA-1 |
| chr2_3 | CDS | 35418375 | 35418519 | 35418375 | ID=Msa0289160-mRNA-1:cds;Parent=Msa0289160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
