Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289200 | KEH38906.1 | 66.397 | 247 | 72 | 2 | 5 | 245 | 1 | 242 | 1.55e-105 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289200 | sp|Q1G3Q4|RITF1_ARATH | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.08e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289200 | A0A072VBE7 | 66.397 | 247 | 72 | 2 | 5 | 245 | 1 | 242 | 7.40e-106 | 315 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0289200 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289200 | MtrunA17_Chr2g0320561 | 68.548 | 248 | 67 | 2 | 4 | 245 | 1 | 243 | 1.20e-107 | 310 |
| Msa0289200 | MtrunA17_Chr4g0020811 | 94.483 | 145 | 8 | 0 | 2 | 146 | 1 | 145 | 1.58e-102 | 294 |
| Msa0289200 | MtrunA17_Chr2g0308401 | 94.406 | 143 | 8 | 0 | 4 | 146 | 1 | 143 | 9.39e-101 | 290 |
| Msa0289200 | MtrunA17_Chr2g0320521 | 64.000 | 250 | 66 | 4 | 2 | 245 | 1 | 232 | 1.16e-98 | 287 |
| Msa0289200 | MtrunA17_Chr2g0320551 | 72.000 | 150 | 37 | 1 | 4 | 148 | 1 | 150 | 1.13e-74 | 224 |
| Msa0289200 | MtrunA17_Chr1g0179781 | 39.754 | 244 | 103 | 7 | 2 | 244 | 1 | 201 | 1.43e-46 | 154 |
| Msa0289200 | MtrunA17_Chr5g0395181 | 37.131 | 237 | 98 | 6 | 8 | 244 | 22 | 207 | 5.49e-43 | 145 |
| Msa0289200 | MtrunA17_Chr5g0411151 | 35.366 | 246 | 109 | 6 | 3 | 244 | 31 | 230 | 6.16e-43 | 145 |
| Msa0289200 | MtrunA17_Chr7g0265291 | 37.805 | 246 | 107 | 8 | 1 | 244 | 1 | 202 | 5.20e-42 | 142 |
| Msa0289200 | MtrunA17_Chr4g0040071 | 34.874 | 238 | 109 | 6 | 8 | 244 | 16 | 208 | 4.53e-41 | 140 |
| Msa0289200 | MtrunA17_Chr8g0366581 | 48.551 | 138 | 61 | 3 | 8 | 145 | 34 | 161 | 1.12e-39 | 137 |
| Msa0289200 | MtrunA17_Chr2g0297251 | 32.917 | 240 | 136 | 9 | 9 | 244 | 39 | 257 | 1.79e-27 | 105 |
| Msa0289200 | MtrunA17_Chr7g0230511 | 30.385 | 260 | 140 | 12 | 6 | 244 | 7 | 246 | 8.45e-23 | 93.2 |
| Msa0289200 | MtrunA17_Chr4g0065041 | 27.668 | 253 | 155 | 8 | 9 | 244 | 10 | 251 | 2.24e-19 | 84.3 |
| Msa0289200 | MtrunA17_Chr4g0052451 | 38.554 | 83 | 49 | 1 | 60 | 142 | 10 | 90 | 1.28e-12 | 62.0 |
| Msa0289200 | MtrunA17_Chr8g0392151 | 30.201 | 149 | 87 | 5 | 9 | 144 | 15 | 159 | 3.45e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289200 | AT1G43000.2 | 39.669 | 242 | 116 | 6 | 3 | 244 | 12 | 223 | 7.69e-50 | 163 |
| Msa0289200 | AT1G43000.1 | 39.669 | 242 | 116 | 6 | 3 | 244 | 5 | 216 | 1.10e-49 | 162 |
| Msa0289200 | AT1G21000.1 | 38.492 | 252 | 128 | 9 | 3 | 244 | 12 | 246 | 1.42e-44 | 150 |
| Msa0289200 | AT1G21000.2 | 38.492 | 252 | 128 | 9 | 3 | 244 | 9 | 243 | 1.50e-44 | 150 |
| Msa0289200 | AT4G17900.1 | 50.360 | 139 | 58 | 4 | 8 | 145 | 35 | 163 | 1.80e-40 | 139 |
| Msa0289200 | AT1G32700.1 | 36.287 | 237 | 106 | 5 | 9 | 244 | 14 | 206 | 1.88e-40 | 139 |
| Msa0289200 | AT4G17900.2 | 50.360 | 139 | 58 | 4 | 8 | 145 | 21 | 149 | 4.54e-40 | 137 |
| Msa0289200 | AT1G76590.1 | 35.628 | 247 | 129 | 9 | 8 | 244 | 19 | 245 | 9.26e-40 | 138 |
| Msa0289200 | AT2G27930.1 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.50e-35 | 124 |
| Msa0289200 | AT2G27930.4 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.50e-35 | 124 |
| Msa0289200 | AT2G27930.3 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 6.85e-35 | 123 |
| Msa0289200 | AT2G27930.2 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 6.85e-35 | 123 |
| Msa0289200 | AT1G32700.2 | 35.407 | 209 | 91 | 4 | 37 | 244 | 2 | 167 | 2.37e-32 | 116 |
| Msa0289200 | AT5G46710.3 | 33.891 | 239 | 112 | 9 | 9 | 244 | 14 | 209 | 3.33e-29 | 109 |
| Msa0289200 | AT5G46710.1 | 33.891 | 239 | 112 | 9 | 9 | 244 | 30 | 225 | 5.81e-29 | 109 |
| Msa0289200 | AT5G46710.2 | 42.222 | 135 | 67 | 4 | 9 | 142 | 30 | 154 | 5.54e-28 | 105 |
| Msa0289200 | AT1G31040.1 | 29.796 | 245 | 140 | 7 | 9 | 244 | 21 | 242 | 1.77e-27 | 105 |
| Msa0289200 | AT2G12646.1 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.20e-20 | 85.9 |
| Msa0289200 | AT2G12646.2 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.20e-20 | 85.9 |
| Msa0289200 | AT2G12646.3 | 38.060 | 134 | 72 | 5 | 9 | 142 | 5 | 127 | 8.23e-20 | 85.9 |
| Msa0289200 | AT3G60670.1 | 38.806 | 134 | 71 | 4 | 9 | 142 | 9 | 131 | 5.42e-19 | 83.6 |
| Msa0289200 | AT2G27930.5 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.09e-18 | 79.7 |
| Msa0289200 | AT2G27930.6 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.09e-18 | 79.7 |
| Msa0289200 | AT2G01818.1 | 29.918 | 244 | 130 | 10 | 9 | 245 | 13 | 222 | 1.02e-16 | 76.6 |
Find 30 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAAAGGAATACCTTAT+AGG | 0.254520 | 2_3:-35449138 | Msa0289200:CDS |
| TTACCAATCTTGTACCTCTT+AGG | 0.298690 | 2_3:+35450295 | None:intergenic |
| CATAAAAGAGATGGAAGAAA+TGG | 0.327529 | 2_3:-35449392 | Msa0289200:CDS |
| AAGAAAAGGAATACCTTATA+GGG | 0.333491 | 2_3:-35449137 | Msa0289200:CDS |
| TTTATGCAAGATCCACATAA+TGG | 0.340696 | 2_3:+35450638 | None:intergenic |
| GGAAGAGGAAGAAGAGCAAA+AGG | 0.388538 | 2_3:-35449248 | Msa0289200:CDS |
| AGGTACAAGATTGGTAAAAT+TGG | 0.400779 | 2_3:-35450289 | Msa0289200:CDS |
| CAACACTTACTTGGATTACT+CGG | 0.451223 | 2_3:+35450597 | None:intergenic |
| CAATCTTGTACCTCTTAGGT+TGG | 0.478301 | 2_3:+35450299 | None:intergenic |
| AAGTCCAATTCAAGAAGAAA+AGG | 0.488785 | 2_3:-35449151 | Msa0289200:CDS |
| AATCTTGTACCTCTTAGGTT+GGG | 0.514191 | 2_3:+35450300 | None:intergenic |
| TACAAGCATGTTGACATCCT+CGG | 0.515051 | 2_3:-35450382 | Msa0289200:CDS |
| TGCAATGGCAATCCATTATG+TGG | 0.515095 | 2_3:-35450650 | Msa0289200:CDS |
| GAGCTCGTGCCCAACCTAAG+AGG | 0.520699 | 2_3:-35450309 | Msa0289200:CDS |
| ATTGATGAAGAAAATGAAGA+GGG | 0.521661 | 2_3:-35449271 | Msa0289200:CDS |
| TTTCGTAAGCATAAAAGAGA+TGG | 0.525934 | 2_3:-35449401 | Msa0289200:CDS |
| CAACCTAAGAGGTACAAGAT+TGG | 0.546024 | 2_3:-35450298 | Msa0289200:CDS |
| AGGATATGATGTTGGTACCC+TGG | 0.557529 | 2_3:-35450766 | Msa0289200:CDS |
| GACATGCGATAGAAATCTTG+TGG | 0.559118 | 2_3:-35450242 | Msa0289200:CDS |
| AAACGAAAACAAGAAGAAGC+AGG | 0.562891 | 2_3:-35449295 | Msa0289200:CDS |
| ATTGCTGCATGAATCAATCA+AGG | 0.566797 | 2_3:-35449365 | Msa0289200:CDS |
| AATTGATGAAGAAAATGAAG+AGG | 0.587208 | 2_3:-35449272 | Msa0289200:CDS |
| AACATGCTTGTAAATTTCAG+TGG | 0.588826 | 2_3:+35450393 | None:intergenic |
| ATGGATTGCCATTGCAATCG+AGG | 0.594757 | 2_3:+35450657 | None:intergenic |
| TCACGTAGGTTTGAATTCCG+AGG | 0.612981 | 2_3:+35450365 | None:intergenic |
| TGATGAAGAAAATGAAGAGG+GGG | 0.616125 | 2_3:-35449269 | Msa0289200:CDS |
| AAGTTCTGCCTCGATTGCAA+TGG | 0.617127 | 2_3:-35450665 | Msa0289200:CDS |
| GCATGCCAAAGAGCAAAAGT+AGG | 0.621061 | 2_3:+35450213 | None:intergenic |
| TTGATGAAGAAAATGAAGAG+GGG | 0.641325 | 2_3:-35449270 | Msa0289200:CDS |
| AGTAGAGCTATTGATCACGT+AGG | 0.696424 | 2_3:+35450351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCATTTTTTTTTTACTT+TGG | - | chr2_3:35449484-35449503 | Msa0289200:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | - | chr2_3:35449883-35449902 | Msa0289200:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | - | chr2_3:35449913-35449932 | Msa0289200:intron | 10.0% |
| !!! | TAATCATTTTTTTTTTACTT+TGG | - | chr2_3:35449484-35449503 | Msa0289200:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | - | chr2_3:35449883-35449902 | Msa0289200:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | - | chr2_3:35449913-35449932 | Msa0289200:intron | 10.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | - | chr2_3:35449188-35449207 | Msa0289200:CDS | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | - | chr2_3:35449530-35449549 | Msa0289200:intron | 15.0% |
| !! | AATAAAAAGAAACTATCAAA+TGG | + | chr2_3:35450319-35450338 | None:intergenic | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | + | chr2_3:35450366-35450385 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | - | chr2_3:35450540-35450559 | Msa0289200:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | - | chr2_3:35450544-35450563 | Msa0289200:intron | 15.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | - | chr2_3:35449188-35449207 | Msa0289200:CDS | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | - | chr2_3:35449530-35449549 | Msa0289200:intron | 15.0% |
| !! | AATAAAAAGAAACTATCAAA+TGG | + | chr2_3:35450319-35450338 | None:intergenic | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | + | chr2_3:35450366-35450385 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | - | chr2_3:35450540-35450559 | Msa0289200:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | - | chr2_3:35450544-35450563 | Msa0289200:intron | 15.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | + | chr2_3:35449523-35449542 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | + | chr2_3:35449524-35449543 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | - | chr2_3:35449962-35449981 | Msa0289200:intron | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | - | chr2_3:35450543-35450562 | Msa0289200:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | + | chr2_3:35450643-35450662 | None:intergenic | 20.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | + | chr2_3:35449523-35449542 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | + | chr2_3:35449524-35449543 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | - | chr2_3:35449962-35449981 | Msa0289200:intron | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | - | chr2_3:35450543-35450562 | Msa0289200:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | + | chr2_3:35450643-35450662 | None:intergenic | 20.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | - | chr2_3:35449200-35449219 | Msa0289200:CDS | 25.0% |
| ! | TTATCATATCTCTTTGATGT+TGG | - | chr2_3:35449824-35449843 | Msa0289200:intron | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | - | chr2_3:35450290-35450309 | Msa0289200:CDS | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | - | chr2_3:35450291-35450310 | Msa0289200:CDS | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | + | chr2_3:35450390-35450409 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | - | chr2_3:35450393-35450412 | Msa0289200:CDS | 25.0% |
| !! | AATGAAAGAAAGAAAAGCAT+AGG | + | chr2_3:35450441-35450460 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | - | chr2_3:35450702-35450721 | Msa0289200:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | - | chr2_3:35450703-35450722 | Msa0289200:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | + | chr2_3:35450830-35450849 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | - | chr2_3:35450837-35450856 | Msa0289200:intron | 25.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | - | chr2_3:35449200-35449219 | Msa0289200:CDS | 25.0% |
| ! | TTATCATATCTCTTTGATGT+TGG | - | chr2_3:35449824-35449843 | Msa0289200:intron | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | - | chr2_3:35450290-35450309 | Msa0289200:CDS | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | - | chr2_3:35450291-35450310 | Msa0289200:CDS | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | + | chr2_3:35450390-35450409 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | - | chr2_3:35450393-35450412 | Msa0289200:CDS | 25.0% |
| !! | AATGAAAGAAAGAAAAGCAT+AGG | + | chr2_3:35450441-35450460 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | - | chr2_3:35450702-35450721 | Msa0289200:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | - | chr2_3:35450703-35450722 | Msa0289200:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | + | chr2_3:35450830-35450849 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | - | chr2_3:35450837-35450856 | Msa0289200:intron | 25.0% |
| TTTATGCAAGATCCACATAA+TGG | + | chr2_3:35449339-35449358 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | + | chr2_3:35449389-35449408 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | + | chr2_3:35449584-35449603 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | - | chr2_3:35449685-35449704 | Msa0289200:intron | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | + | chr2_3:35449802-35449821 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | + | chr2_3:35450289-35450308 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | + | chr2_3:35450408-35450427 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | - | chr2_3:35450406-35450425 | Msa0289200:CDS | 30.0% | |
| ! | AAATAACGAAAGTGCAACAA+TGG | + | chr2_3:35450466-35450485 | None:intergenic | 30.0% |
| GAATATATAAAAAAGGAGGG+AGG | - | chr2_3:35450547-35450566 | Msa0289200:intron | 30.0% | |
| TTTCGTAAGCATAAAAGAGA+TGG | - | chr2_3:35450573-35450592 | Msa0289200:intron | 30.0% | |
| CATAAAAGAGATGGAAGAAA+TGG | - | chr2_3:35450582-35450601 | Msa0289200:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | - | chr2_3:35450704-35450723 | Msa0289200:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | - | chr2_3:35450745-35450764 | Msa0289200:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | - | chr2_3:35450823-35450842 | Msa0289200:intron | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | - | chr2_3:35450836-35450855 | Msa0289200:intron | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | + | chr2_3:35450853-35450872 | None:intergenic | 30.0% |
| TTTATGCAAGATCCACATAA+TGG | + | chr2_3:35449339-35449358 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | + | chr2_3:35449389-35449408 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | + | chr2_3:35449584-35449603 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | - | chr2_3:35449685-35449704 | Msa0289200:intron | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | + | chr2_3:35449802-35449821 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | + | chr2_3:35450289-35450308 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | + | chr2_3:35450408-35450427 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | - | chr2_3:35450406-35450425 | Msa0289200:CDS | 30.0% | |
| ! | AAATAACGAAAGTGCAACAA+TGG | + | chr2_3:35450466-35450485 | None:intergenic | 30.0% |
| GAATATATAAAAAAGGAGGG+AGG | - | chr2_3:35450547-35450566 | Msa0289200:intron | 30.0% | |
| TTTCGTAAGCATAAAAGAGA+TGG | - | chr2_3:35450573-35450592 | Msa0289200:intron | 30.0% | |
| CATAAAAGAGATGGAAGAAA+TGG | - | chr2_3:35450582-35450601 | Msa0289200:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | - | chr2_3:35450704-35450723 | Msa0289200:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | - | chr2_3:35450745-35450764 | Msa0289200:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | - | chr2_3:35450823-35450842 | Msa0289200:intron | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | - | chr2_3:35450836-35450855 | Msa0289200:intron | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | + | chr2_3:35450853-35450872 | None:intergenic | 30.0% |
| CAACACTTACTTGGATTACT+CGG | + | chr2_3:35449380-35449399 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | + | chr2_3:35449677-35449696 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | + | chr2_3:35449682-35449701 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | - | chr2_3:35449756-35449775 | Msa0289200:intron | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | + | chr2_3:35450283-35450302 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | - | chr2_3:35450396-35450415 | Msa0289200:CDS | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | - | chr2_3:35450609-35450628 | Msa0289200:CDS | 35.0% | |
| AAACGAAAACAAGAAGAAGC+AGG | - | chr2_3:35450679-35450698 | Msa0289200:CDS | 35.0% | |
| TGATGAAGAAAATGAAGAGG+GGG | - | chr2_3:35450705-35450724 | Msa0289200:CDS | 35.0% | |
| CAACACTTACTTGGATTACT+CGG | + | chr2_3:35449380-35449399 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | + | chr2_3:35449677-35449696 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | + | chr2_3:35449682-35449701 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | - | chr2_3:35449756-35449775 | Msa0289200:intron | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | + | chr2_3:35450283-35450302 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | - | chr2_3:35450396-35450415 | Msa0289200:CDS | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | - | chr2_3:35450609-35450628 | Msa0289200:CDS | 35.0% | |
| AAACGAAAACAAGAAGAAGC+AGG | - | chr2_3:35450679-35450698 | Msa0289200:CDS | 35.0% | |
| TGATGAAGAAAATGAAGAGG+GGG | - | chr2_3:35450705-35450724 | Msa0289200:CDS | 35.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | - | chr2_3:35449224-35449243 | Msa0289200:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | + | chr2_3:35449228-35449247 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | + | chr2_3:35449229-35449248 | None:intergenic | 40.0% |
| !! | CATTTTTCGACTCTCTTGGA+TGG | + | chr2_3:35449281-35449300 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | + | chr2_3:35449285-35449304 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | - | chr2_3:35449324-35449343 | Msa0289200:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | - | chr2_3:35449592-35449611 | Msa0289200:intron | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | + | chr2_3:35449626-35449645 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | + | chr2_3:35449678-35449697 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | - | chr2_3:35449676-35449695 | Msa0289200:intron | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | - | chr2_3:35449732-35449751 | Msa0289200:intron | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | - | chr2_3:35449776-35449795 | Msa0289200:intron | 40.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | - | chr2_3:35449224-35449243 | Msa0289200:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | + | chr2_3:35449228-35449247 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | + | chr2_3:35449229-35449248 | None:intergenic | 40.0% |
| !! | CATTTTTCGACTCTCTTGGA+TGG | + | chr2_3:35449281-35449300 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | + | chr2_3:35449285-35449304 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | - | chr2_3:35449324-35449343 | Msa0289200:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | - | chr2_3:35449592-35449611 | Msa0289200:intron | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | + | chr2_3:35449626-35449645 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | + | chr2_3:35449678-35449697 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | - | chr2_3:35449676-35449695 | Msa0289200:intron | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | - | chr2_3:35449732-35449751 | Msa0289200:intron | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | - | chr2_3:35449776-35449795 | Msa0289200:intron | 40.0% | |
| AGGATATGATGTTGGTACCC+TGG | - | chr2_3:35449208-35449227 | Msa0289200:CDS | 45.0% | |
| AAGTTCTGCCTCGATTGCAA+TGG | - | chr2_3:35449309-35449328 | Msa0289200:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | + | chr2_3:35449320-35449339 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | + | chr2_3:35449612-35449631 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | + | chr2_3:35449764-35449783 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | chr2_3:35449765-35449784 | Msa0289200:intron | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | + | chr2_3:35450278-35450297 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | - | chr2_3:35450711-35450730 | Msa0289200:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | - | chr2_3:35450726-35450745 | Msa0289200:CDS | 45.0% | |
| AGGATATGATGTTGGTACCC+TGG | - | chr2_3:35449208-35449227 | Msa0289200:CDS | 45.0% | |
| AAGTTCTGCCTCGATTGCAA+TGG | - | chr2_3:35449309-35449328 | Msa0289200:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | + | chr2_3:35449320-35449339 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | + | chr2_3:35449612-35449631 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | + | chr2_3:35449764-35449783 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | chr2_3:35449765-35449784 | Msa0289200:intron | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | + | chr2_3:35450278-35450297 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | - | chr2_3:35450711-35450730 | Msa0289200:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | - | chr2_3:35450726-35450745 | Msa0289200:CDS | 45.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | - | chr2_3:35449665-35449684 | Msa0289200:intron | 60.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | - | chr2_3:35449665-35449684 | Msa0289200:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 35449123 | 35450873 | 35449123 | ID=Msa0289200;Name=Msa0289200 |
| chr2_3 | mRNA | 35449123 | 35450873 | 35449123 | ID=Msa0289200-mRNA-1;Parent=Msa0289200;Name=Msa0289200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|0.33|0.5|4|0|245 |
| chr2_3 | exon | 35450868 | 35450873 | 35450868 | ID=Msa0289200-mRNA-1:exon:11443;Parent=Msa0289200-mRNA-1 |
| chr2_3 | exon | 35450607 | 35450786 | 35450607 | ID=Msa0289200-mRNA-1:exon:11442;Parent=Msa0289200-mRNA-1 |
| chr2_3 | exon | 35450210 | 35450449 | 35450210 | ID=Msa0289200-mRNA-1:exon:11441;Parent=Msa0289200-mRNA-1 |
| chr2_3 | exon | 35449123 | 35449434 | 35449123 | ID=Msa0289200-mRNA-1:exon:11440;Parent=Msa0289200-mRNA-1 |
| chr2_3 | CDS | 35450868 | 35450873 | 35450868 | ID=Msa0289200-mRNA-1:cds;Parent=Msa0289200-mRNA-1 |
| chr2_3 | CDS | 35450607 | 35450786 | 35450607 | ID=Msa0289200-mRNA-1:cds;Parent=Msa0289200-mRNA-1 |
| chr2_3 | CDS | 35450210 | 35450449 | 35450210 | ID=Msa0289200-mRNA-1:cds;Parent=Msa0289200-mRNA-1 |
| chr2_3 | CDS | 35449123 | 35449434 | 35449123 | ID=Msa0289200-mRNA-1:cds;Parent=Msa0289200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
