AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0289320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289320 MtrunA17_Chr2g0308761 88.276 435 48 2 14 448 1 432 0.0 777
Msa0289320 MtrunA17_Chr2g0308431 93.407 91 4 1 334 424 1 89 2.65e-52 175
Msa0289320 MtrunA17_Chr4g0020831 93.407 91 4 1 334 424 1 89 1.53e-51 173
Msa0289320 MtrunA17_Chr2g0308421 84.615 52 7 1 527 577 1 52 9.96e-20 82.8
Msa0289320 MtrunA17_Chr1g0160961 78.689 61 12 1 518 577 655 715 1.65e-19 93.6
Msa0289320 MtrunA17_Chr5g0419891 62.338 77 13 2 517 577 515 591 2.44e-16 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289320 AT1G74120.1 48.643 442 223 2 6 447 7 444 1.73e-144 426
Msa0289320 AT5G54180.1 28.829 222 152 5 153 370 253 472 3.04e-14 76.3
Msa0289320 AT1G62010.1 27.083 192 121 5 211 399 213 388 4.85e-11 65.5

Find 156 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCCAATTTCTACTTAAT+TGG 0.102106 2_3:+35539360 Msa0289320:CDS
GAAAGCTTGGATATGAATTT+TGG 0.127070 2_3:-35539395 None:intergenic
ATTCCCAATTAAGTAGAAAT+TGG 0.160887 2_3:-35539364 None:intergenic
CCGATCTTTGGAACAAATTC+TGG 0.176573 2_3:-35542912 None:intergenic
ACAATTGTACAGAGATTTAT+TGG 0.191689 2_3:+35542177 Msa0289320:CDS
AATCTTGAATAAGGGAAATT+AGG 0.210110 2_3:-35539322 None:intergenic
TGATGTTGTGATTAGGGTTT+TGG 0.225835 2_3:+35539532 Msa0289320:CDS
AAATATCAAGTGGGTTTAAA+TGG 0.226943 2_3:-35539469 None:intergenic
TTTCCTAGGGTTTCGGGATT+TGG 0.231060 2_3:+35539665 Msa0289320:CDS
TGTTAGGGATCCAAGGGTTT+TGG 0.241406 2_3:+35539766 Msa0289320:CDS
TTCTGATGATGTTGTGATTA+GGG 0.254350 2_3:+35539526 Msa0289320:CDS
ATTCATGAGTTGAGGAGTTT+GGG 0.255104 2_3:+35539713 Msa0289320:CDS
AGATTGTTTCCTAGGGTTTC+GGG 0.259151 2_3:+35539659 Msa0289320:CDS
TAGATTGTTTCCTAGGGTTT+CGG 0.272508 2_3:+35539658 Msa0289320:CDS
CAGAAGGGCAATCTTGAATA+AGG 0.272691 2_3:-35539331 None:intergenic
ACTTGAGTTGATCAAAATAT+TGG 0.275160 2_3:+35542935 Msa0289320:CDS
ATTTCTACTTAATTGGGAAT+TGG 0.276747 2_3:+35539367 Msa0289320:CDS
ATCAACTCAAGTCCGATCTT+TGG 0.291108 2_3:-35542924 None:intergenic
TCTTGAAAGGGTGACATTAC+AGG 0.292157 2_3:+35542863 Msa0289320:CDS
TTTCTGATGATGTTGTGATT+AGG 0.294754 2_3:+35539525 Msa0289320:CDS
TTCCCAATTAAGTAGAAATT+GGG 0.301013 2_3:-35539363 None:intergenic
TTGATCAAAATATTGGCATT+TGG 0.301587 2_3:+35542942 Msa0289320:CDS
CAACACCATATTTCATCCTT+TGG 0.306291 2_3:-35540033 None:intergenic
ACAATAGAGTTGAGGCCATT+AGG 0.306678 2_3:+35540754 Msa0289320:CDS
AGGTCAGGGCGGAGGTTGTT+AGG 0.309694 2_3:+35539750 Msa0289320:CDS
TTAATCCAAAGGATGAAATA+TGG 0.315058 2_3:+35540028 Msa0289320:CDS
TTGAAAGGAAAAGGTGCAAT+TGG 0.315697 2_3:+35540136 Msa0289320:CDS
TGTAGAACACCGCAATAAAT+TGG 0.316256 2_3:-35539441 None:intergenic
GATTCATGAGTTGAGGAGTT+TGG 0.321130 2_3:+35539712 Msa0289320:CDS
TGATCAAAATATTGGCATTT+GGG 0.327176 2_3:+35542943 Msa0289320:CDS
TTTCTACTTAATTGGGAATT+GGG 0.329864 2_3:+35539368 Msa0289320:CDS
TTTCCCACTGCAGTTGTAAT+GGG 0.336217 2_3:+35539560 Msa0289320:CDS
CAATAGAGTTGAGGCCATTA+GGG 0.340610 2_3:+35540755 Msa0289320:CDS
GAAGAACATGAAGGCTTTCA+TGG 0.341403 2_3:+35540351 Msa0289320:CDS
AACATGCGAATTCACAGATT+TGG 0.348169 2_3:-35540626 None:intergenic
AAGTGGTTCTTACAAGAATA+AGG 0.352405 2_3:-35539082 None:intergenic
GGGTTGTTAGATTGTTTCCT+AGG 0.353615 2_3:+35539651 Msa0289320:CDS
ACCCCAATTTCTACTTAATT+GGG 0.360043 2_3:+35539361 Msa0289320:CDS
CATGAAGTTCCTTCATACTT+AGG 0.364333 2_3:+35540064 Msa0289320:CDS
GTTGGAGCGGAAAACTTGTT+TGG 0.369327 2_3:+35542362 Msa0289320:CDS
AAAATCTGTAAAACTCTTGA+AGG 0.378482 2_3:+35542227 Msa0289320:CDS
GCAGCAGCTCATGGAATGTT+TGG 0.383910 2_3:+35540730 Msa0289320:CDS
AGTTACAACATTCATTAGTT+GGG 0.385822 2_3:+35540778 Msa0289320:CDS
ACAATCTGTCCGATGGGGTT+GGG 0.396491 2_3:+35539029 None:intergenic
TGTTTGGAGTTTATAAAGAA+TGG 0.398840 2_3:+35542378 Msa0289320:CDS
GGTGCAATTGGGTTTGAAGT+TGG 0.399622 2_3:+35540148 Msa0289320:CDS
GAGTTACAACATTCATTAGT+TGG 0.403178 2_3:+35540777 Msa0289320:CDS
TTCCTAAGGATGAAATTGAT+AGG 0.405215 2_3:+35539630 Msa0289320:CDS
GGTCCGTAGGGATGCTTTGA+AGG 0.410069 2_3:+35539940 Msa0289320:CDS
ATTGAGTATTTGAAAGGAAA+AGG 0.423032 2_3:+35540127 Msa0289320:CDS
GTAAGCATCCAGCTGGACTT+TGG 0.424175 2_3:+35540284 Msa0289320:CDS
TGAAAGGAAAAGGTGCAATT+GGG 0.424464 2_3:+35540137 Msa0289320:CDS
ATTTCCCACTGCAGTTGTAA+TGG 0.426062 2_3:+35539559 Msa0289320:CDS
GCTAATCTCTTCCAATCCTT+CGG 0.426075 2_3:+35539179 Msa0289320:CDS
CATGTTCTTCACATCTTGAC+CGG 0.428680 2_3:-35540338 None:intergenic
CACAATCTGTCCGATGGGGT+TGG 0.429626 2_3:+35539028 None:intergenic
TGTTGCAGAGTTTGAAATGC+AGG 0.431814 2_3:+35539825 Msa0289320:CDS
TGGGTTTGAAGTTGGATTGA+AGG 0.437194 2_3:+35540156 Msa0289320:CDS
TGTGGAATTTGGGGTTCCTA+AGG 0.437466 2_3:+35539616 Msa0289320:CDS
CCAGAATTTGTTCCAAAGAT+CGG 0.439021 2_3:+35542912 Msa0289320:CDS
GTGGTCACGGTTTGGTCCGT+AGG 0.440458 2_3:+35539927 Msa0289320:CDS
GAACCAAGGTTGATTGCTTA+CGG 0.441891 2_3:+35539974 Msa0289320:CDS
TTCACATCTTGACCGGTTTG+AGG 0.446780 2_3:-35540331 None:intergenic
CAGCCGAGAGGTCAGGGCGG+AGG 0.450679 2_3:+35539742 Msa0289320:CDS
CAATTGTACAGAGATTTATT+GGG 0.454992 2_3:+35542178 Msa0289320:CDS
CGGGATTTGGAATTGAGGAT+AGG 0.460840 2_3:+35539678 Msa0289320:CDS
TGAATGTTGTAACTCCCTAA+TGG 0.462308 2_3:-35540769 None:intergenic
GTTGTTATTAGTTGAAGAAG+TGG 0.465877 2_3:-35539099 None:intergenic
GTTGATTGCTTACGGCTTGG+AGG 0.471445 2_3:+35539982 Msa0289320:CDS
ATCTCCATTCCCAAAACCCT+TGG 0.472530 2_3:-35539776 None:intergenic
GGTTAAGGTCTTGGCTCAGT+TGG 0.473212 2_3:+35542344 Msa0289320:intron
CTCCGCCCTGACCTCTCGGC+TGG 0.473380 2_3:-35539741 None:intergenic
TACTCAATGACATTGTATCT+AGG 0.474566 2_3:-35540112 None:intergenic
GTTTGGAGTTTATAAAGAAT+GGG 0.474872 2_3:+35542379 Msa0289320:CDS
ACCCTATCAATTTCATCCTT+AGG 0.474968 2_3:-35539632 None:intergenic
AAGGTTGATTGCTTACGGCT+TGG 0.480277 2_3:+35539979 Msa0289320:CDS
GGTCAGGGCGGAGGTTGTTA+GGG 0.481020 2_3:+35539751 Msa0289320:CDS
GATCGGTATTGAAGAGGAAG+TGG 0.483347 2_3:-35539241 None:intergenic
AGGAAGGGAAACCGAAGGAT+TGG 0.491372 2_3:-35539190 None:intergenic
GGTAAGAGATTGACGAAGGT+GGG 0.494203 2_3:-35539267 None:intergenic
TTGTTTGTGTGGTCACGGTT+TGG 0.495793 2_3:+35539919 Msa0289320:CDS
GGTTGTTAGATTGTTTCCTA+GGG 0.496449 2_3:+35539652 Msa0289320:CDS
AATGTCATTGAGTATTTGAA+AGG 0.500561 2_3:+35540121 Msa0289320:CDS
TCAAGATTGCCCTTCTGTGT+TGG 0.502454 2_3:+35539337 Msa0289320:CDS
CGGGGAAGGATTAGAAAGCT+TGG 0.503315 2_3:-35539408 None:intergenic
TTGTAAAATCTAAGCCTAGT+TGG 0.506128 2_3:-35540190 None:intergenic
AGATGTAGGTGGATTAGAAA+TGG 0.507251 2_3:-35539132 None:intergenic
TGCTTTCAGAGTTCTTGAAA+GGG 0.508227 2_3:+35542851 Msa0289320:intron
CGGAGGTTGTTAGGGATCCA+AGG 0.508723 2_3:+35539759 Msa0289320:CDS
TGGTAAGAGATTGACGAAGG+TGG 0.510918 2_3:-35539268 None:intergenic
ATGCTTTCAGAGTTCTTGAA+AGG 0.511397 2_3:+35542850 Msa0289320:intron
CCACAGAAGTTTCCTCAAAC+CGG 0.516850 2_3:+35540319 Msa0289320:CDS
AATCCGTGGCACAGGTCCAT+TGG 0.518651 2_3:-35542889 None:intergenic
TTCATGAGTTGAGGAGTTTG+GGG 0.519712 2_3:+35539714 Msa0289320:CDS
TGTAGGTGGATTAGAAATGG+TGG 0.521617 2_3:-35539129 None:intergenic
ATAAATTGGCTATCATCAGC+GGG 0.523449 2_3:-35539427 None:intergenic
TTTGAGGAAACTTCTGTGGT+TGG 0.524496 2_3:-35540315 None:intergenic
AACAGCTTCCAAAGTCCAGC+TGG 0.524566 2_3:-35540292 None:intergenic
CCATGAGCTGCTGCTTGTGG+TGG 0.524848 2_3:-35540721 None:intergenic
AATTCTGGAATCCGTGGCAC+AGG 0.526371 2_3:-35542897 None:intergenic
GGTTTCGGGATTTGGAATTG+AGG 0.528445 2_3:+35539673 Msa0289320:CDS
AAATTCGGAAGAGAAGAGGA+AGG 0.533269 2_3:-35539206 None:intergenic
GTTACAACATTCATTAGTTG+GGG 0.534750 2_3:+35540779 Msa0289320:CDS
AGAAGGGCAATCTTGAATAA+GGG 0.535156 2_3:-35539330 None:intergenic
TTGGCTATCATCAGCGGGGA+AGG 0.535986 2_3:-35539422 None:intergenic
TTCCCCATTACAACTGCAGT+GGG 0.537140 2_3:-35539563 None:intergenic
AATAAATTGGCTATCATCAG+CGG 0.542731 2_3:-35539428 None:intergenic
TCCTAAGGATGAAATTGATA+GGG 0.543797 2_3:+35539631 Msa0289320:CDS
GTTAAAAGTAAGCATCCAGC+TGG 0.546625 2_3:+35540277 Msa0289320:CDS
TTGACGAAGGTGGGATGGAT+CGG 0.551796 2_3:-35539258 None:intergenic
GTGGATTGTTTGTGTGGTCA+CGG 0.552758 2_3:+35539914 Msa0289320:CDS
ATTCCAAATCCCGAAACCCT+AGG 0.553487 2_3:-35539668 None:intergenic
TGTTGATACTCAACAGTGTA+TGG 0.561591 2_3:+35540806 Msa0289320:CDS
GTTGCAGAGTTTGAAATGCA+GGG 0.562878 2_3:+35539826 Msa0289320:CDS
AGAGATTGACGAAGGTGGGA+TGG 0.563472 2_3:-35539263 None:intergenic
CAACCTCCGCCCTGACCTCT+CGG 0.563699 2_3:-35539745 None:intergenic
CCACCACAAGCAGCAGCTCA+TGG 0.566254 2_3:+35540721 Msa0289320:CDS
ATGGGGAAAAGTCAAATTGT+TGG 0.568119 2_3:+35539578 Msa0289320:CDS
GAGGAAATTCGGAAGAGAAG+AGG 0.568672 2_3:-35539210 None:intergenic
TTGAGAGTGGATTGTTTGTG+TGG 0.573095 2_3:+35539908 Msa0289320:CDS
ATTCCATGAGCTGCTGCTTG+TGG 0.573331 2_3:-35540724 None:intergenic
TCCCAATTAAGTAGAAATTG+GGG 0.577215 2_3:-35539362 None:intergenic
AAATTCACACCTAAGTATGA+AGG 0.579741 2_3:-35540073 None:intergenic
TGCTTTGAAGGTGTTGTGGA+AGG 0.580553 2_3:+35539952 Msa0289320:CDS
AGCTGTTGATTCATGAGTTG+AGG 0.589517 2_3:+35539705 Msa0289320:CDS
AATTGGGGTTCCAACACAGA+AGG 0.590708 2_3:-35539347 None:intergenic
AATTCGGAAGAGAAGAGGAA+GGG 0.592899 2_3:-35539205 None:intergenic
CCGGTTTGAGGAAACTTCTG+TGG 0.592977 2_3:-35540319 None:intergenic
TGGTCACGGTTTGGTCCGTA+GGG 0.595187 2_3:+35539928 Msa0289320:CDS
GGGATGGATCGGTATTGAAG+AGG 0.598546 2_3:-35539247 None:intergenic
GGAGGTTGTTAGGGATCCAA+GGG 0.599772 2_3:+35539760 Msa0289320:CDS
GGGTGGTAAGAGATTGACGA+AGG 0.601379 2_3:-35539271 None:intergenic
AGGTCTTGGCTCAGTTGGAG+CGG 0.602503 2_3:+35542349 Msa0289320:intron
TTTCCCCATTACAACTGCAG+TGG 0.603282 2_3:-35539564 None:intergenic
ACTTTATGGGAAATATCAAG+TGG 0.603369 2_3:-35539479 None:intergenic
CTTTATGGGAAATATCAAGT+GGG 0.607807 2_3:-35539478 None:intergenic
GGGATGCTTTGAAGGTGTTG+TGG 0.613256 2_3:+35539948 Msa0289320:CDS
TTCCCACTGCAGTTGTAATG+GGG 0.614215 2_3:+35539561 Msa0289320:CDS
AAGCCAATGGACCTGTGCCA+CGG 0.617584 2_3:+35542886 Msa0289320:CDS
AAGCCGTAAGCAATCAACCT+TGG 0.618922 2_3:-35539977 None:intergenic
GGAACAAATTCTGGAATCCG+TGG 0.622732 2_3:-35542903 None:intergenic
TGTTTGGAACAATAGAGTTG+AGG 0.628296 2_3:+35540746 Msa0289320:CDS
ATTGGGGTTCCAACACAGAA+GGG 0.628360 2_3:-35539346 None:intergenic
TGATGATAGCCAATTTATTG+CGG 0.634282 2_3:+35539432 Msa0289320:CDS
ATGGTGGAACCCAACCCCAT+CGG 0.637698 2_3:-35539038 None:intergenic
AGGACATCATCAAACCAACT+AGG 0.642474 2_3:+35540176 Msa0289320:CDS
GTGACATTACAGGAAGCCAA+TGG 0.643356 2_3:+35542873 Msa0289320:CDS
AGAAGAGGAAGGGAAACCGA+AGG 0.647325 2_3:-35539195 None:intergenic
ACACCTTCAAAGCATCCCTA+CGG 0.648597 2_3:-35539943 None:intergenic
TCAAGATGTGAAGAACATGA+AGG 0.654568 2_3:+35540342 Msa0289320:CDS
TTTCTGTAATGAGATGTAGG+TGG 0.659285 2_3:-35539143 None:intergenic
GCAGGGAGGCAATTAAAGAG+AGG 0.662756 2_3:+35539843 Msa0289320:CDS
TTCCAGCCGAGAGGTCAGGG+CGG 0.702811 2_3:+35539739 Msa0289320:CDS
AGGTGTTGTGGAAGGAACCA+AGG 0.704640 2_3:+35539960 Msa0289320:CDS
GCAGAGTTTGAAATGCAGGG+AGG 0.745889 2_3:+35539829 Msa0289320:CDS
TAAATTGGCTATCATCAGCG+GGG 0.750324 2_3:-35539426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGATTTAAAATTAATTTT+GGG - chr2_3:35540588-35540607 None:intergenic 10.0%
!!! TTGTGATTTAAAATTAATTT+TGG - chr2_3:35540589-35540608 None:intergenic 10.0%
!!! AAATTAATTTTAAATCACAA+AGG + chr2_3:35540589-35540608 Msa0289320:intron 10.0%
!!! AATTAATTTTAAATCACAAA+GGG + chr2_3:35540590-35540609 Msa0289320:intron 10.0%
!!! AAAAATATTTTAACAGAAAA+AGG - chr2_3:35542281-35542300 None:intergenic 10.0%
!! AAGAATTATAAAAATGTTAG+TGG + chr2_3:35540687-35540706 Msa0289320:CDS 15.0%
!!! TTGAAACAGTTTAATTTTTA+GGG - chr2_3:35541222-35541241 None:intergenic 15.0%
!! TAAAAATTAAACTGTTTCAA+GGG + chr2_3:35541222-35541241 Msa0289320:intron 15.0%
!! TATAAAAAAATCTTAAAGTG+AGG - chr2_3:35541540-35541559 None:intergenic 15.0%
!! AACATATAATATGAACTTAA+GGG - chr2_3:35541685-35541704 None:intergenic 15.0%
!!! TTAATTTTCTTGTGGAATTT+GGG + chr2_3:35539606-35539625 Msa0289320:CDS 20.0%
!! CAGAATGTGAAAAAATATAT+GGG + chr2_3:35540233-35540252 Msa0289320:CDS 20.0%
!!! AAAAATATATGGGAGATTTT+CGG + chr2_3:35540243-35540262 Msa0289320:CDS 20.0%
!! AATACGTAAAAGACAAAATA+GGG - chr2_3:35540984-35541003 None:intergenic 20.0%
!! AAATACGTAAAAGACAAAAT+AGG - chr2_3:35540985-35541004 None:intergenic 20.0%
!!! CTTGAAACAGTTTAATTTTT+AGG - chr2_3:35541223-35541242 None:intergenic 20.0%
!! CTAAAAATTAAACTGTTTCA+AGG + chr2_3:35541221-35541240 Msa0289320:intron 20.0%
!!! TTATGCATTGTATTTTTGTA+TGG + chr2_3:35541570-35541589 Msa0289320:intron 20.0%
!! GAACATATAATATGAACTTA+AGG - chr2_3:35541686-35541705 None:intergenic 20.0%
!!! ATGTTTTTCTCGTAAAATTT+GGG - chr2_3:35541954-35541973 None:intergenic 20.0%
!!! AATGTTTTTCTCGTAAAATT+TGG - chr2_3:35541955-35541974 None:intergenic 20.0%
!!! ACTAATGTTTGATATGATTT+TGG + chr2_3:35542323-35542342 Msa0289320:intron 20.0%
!!! TTGATATAAATTTCAAGTCA+TGG - chr2_3:35542415-35542434 None:intergenic 20.0%
!!! ACATGTATCTAAAATTGTTA+GGG + chr2_3:35542776-35542795 Msa0289320:intron 20.0%
! AATCTTGAATAAGGGAAATT+AGG - chr2_3:35539325-35539344 None:intergenic 25.0%
! TTCCCAATTAAGTAGAAATT+GGG - chr2_3:35539366-35539385 None:intergenic 25.0%
! ATTCCCAATTAAGTAGAAAT+TGG - chr2_3:35539367-35539386 None:intergenic 25.0%
! ATTTCTACTTAATTGGGAAT+TGG + chr2_3:35539367-35539386 Msa0289320:CDS 25.0%
! TTTCTACTTAATTGGGAATT+GGG + chr2_3:35539368-35539387 Msa0289320:CDS 25.0%
!! AAATATCAAGTGGGTTTAAA+TGG - chr2_3:35539472-35539491 None:intergenic 25.0%
! CCTAAAAATCTCAACTTTAT+GGG - chr2_3:35539495-35539514 None:intergenic 25.0%
!! CCATAAAGTTGAGATTTTTA+GGG + chr2_3:35539493-35539512 Msa0289320:CDS 25.0%
!!! CATAAAGTTGAGATTTTTAG+GGG + chr2_3:35539494-35539513 Msa0289320:CDS 25.0%
!! GTTAATTTTCTTGTGGAATT+TGG + chr2_3:35539605-35539624 Msa0289320:CDS 25.0%
!! TAATTTTCTTGTGGAATTTG+GGG + chr2_3:35539607-35539626 Msa0289320:CDS 25.0%
!! AGATTGAGTTTTTAATCCAA+AGG + chr2_3:35540017-35540036 Msa0289320:CDS 25.0%
! TTAATCCAAAGGATGAAATA+TGG + chr2_3:35540028-35540047 Msa0289320:CDS 25.0%
! AATGTCATTGAGTATTTGAA+AGG + chr2_3:35540121-35540140 Msa0289320:CDS 25.0%
! ATTGAGTATTTGAAAGGAAA+AGG + chr2_3:35540127-35540146 Msa0289320:CDS 25.0%
!!! ATTTTTTCACATTCTGGATA+AGG - chr2_3:35540229-35540248 None:intergenic 25.0%
!!! CCATATATTTTTTCACATTC+TGG - chr2_3:35540235-35540254 None:intergenic 25.0%
! CCAGAATGTGAAAAAATATA+TGG + chr2_3:35540232-35540251 Msa0289320:CDS 25.0%
!! AAAATATATGGGAGATTTTC+GGG + chr2_3:35540244-35540263 Msa0289320:CDS 25.0%
! AGTTACAACATTCATTAGTT+GGG + chr2_3:35540778-35540797 Msa0289320:CDS 25.0%
!!! ACCACTATATTGTTTTAATG+TGG + chr2_3:35541189-35541208 Msa0289320:intron 25.0%
! TCCACATTAAAACAATATAG+TGG - chr2_3:35541193-35541212 None:intergenic 25.0%
! TACAGAGATAACTCATATTA+GGG - chr2_3:35541440-35541459 None:intergenic 25.0%
! TTACAGAGATAACTCATATT+AGG - chr2_3:35541441-35541460 None:intergenic 25.0%
! AAATTCTGAACAATGCATAT+AGG - chr2_3:35541652-35541671 None:intergenic 25.0%
!! ATGCATTGTTCAGAATTTTA+TGG + chr2_3:35541654-35541673 Msa0289320:intron 25.0%
! ACAATTGTACAGAGATTTAT+TGG + chr2_3:35542177-35542196 Msa0289320:CDS 25.0%
! CAATTGTACAGAGATTTATT+GGG + chr2_3:35542178-35542197 Msa0289320:CDS 25.0%
!! GAGTTTTACAGATTTTATTC+TGG - chr2_3:35542223-35542242 None:intergenic 25.0%
! AAAATCTGTAAAACTCTTGA+AGG + chr2_3:35542227-35542246 Msa0289320:CDS 25.0%
!!! GTTTGATATGATTTTGGTTA+AGG + chr2_3:35542329-35542348 Msa0289320:intron 25.0%
!! TGTTTGGAGTTTATAAAGAA+TGG + chr2_3:35542378-35542397 Msa0289320:CDS 25.0%
!! GTTTGGAGTTTATAAAGAAT+GGG + chr2_3:35542379-35542398 Msa0289320:CDS 25.0%
! GGAAGAAAAAAAAGTAAACT+CGG + chr2_3:35542469-35542488 Msa0289320:intron 25.0%
! GAAGAAAAAAAAGTAAACTC+GGG + chr2_3:35542470-35542489 Msa0289320:intron 25.0%
!!! TCGATAAGTTTTTCAAATGA+AGG - chr2_3:35542607-35542626 None:intergenic 25.0%
!! CTAACAATTTTAGATACATG+TGG - chr2_3:35542777-35542796 None:intergenic 25.0%
!! CACATGTATCTAAAATTGTT+AGG + chr2_3:35542775-35542794 Msa0289320:intron 25.0%
!! CATGTATCTAAAATTGTTAG+GGG + chr2_3:35542777-35542796 Msa0289320:intron 25.0%
!! ATGTATCTAAAATTGTTAGG+GGG + chr2_3:35542778-35542797 Msa0289320:intron 25.0%
!!! TATTGTAACTCTTTTTTCGT+TGG + chr2_3:35542807-35542826 Msa0289320:intron 25.0%
!!! ACTTGAGTTGATCAAAATAT+TGG + chr2_3:35542935-35542954 Msa0289320:CDS 25.0%
! TTGATCAAAATATTGGCATT+TGG + chr2_3:35542942-35542961 Msa0289320:CDS 25.0%
! TGATCAAAATATTGGCATTT+GGG + chr2_3:35542943-35542962 Msa0289320:CDS 25.0%
!!! GTTGTTTCTTTTTCTGACTA+TGG - chr2_3:35539060-35539079 None:intergenic 30.0%
AAGTGGTTCTTACAAGAATA+AGG - chr2_3:35539085-35539104 None:intergenic 30.0%
! GTTGTTATTAGTTGAAGAAG+TGG - chr2_3:35539102-35539121 None:intergenic 30.0%
! TGTTTTCTGTAATGAGATGT+AGG - chr2_3:35539149-35539168 None:intergenic 30.0%
!! TGGAATTTTGAAGGAAAAGA+GGG - chr2_3:35539294-35539313 None:intergenic 30.0%
! GTTTTTCTGTGGAATTTTGA+AGG - chr2_3:35539303-35539322 None:intergenic 30.0%
AACCCCAATTTCTACTTAAT+TGG + chr2_3:35539360-35539379 Msa0289320:CDS 30.0%
ACCCCAATTTCTACTTAATT+GGG + chr2_3:35539361-35539380 Msa0289320:CDS 30.0%
TCCCAATTAAGTAGAAATTG+GGG - chr2_3:35539365-35539384 None:intergenic 30.0%
! GAAAGCTTGGATATGAATTT+TGG - chr2_3:35539398-35539417 None:intergenic 30.0%
AATAAATTGGCTATCATCAG+CGG - chr2_3:35539431-35539450 None:intergenic 30.0%
TGATGATAGCCAATTTATTG+CGG + chr2_3:35539432-35539451 Msa0289320:CDS 30.0%
CTTTATGGGAAATATCAAGT+GGG - chr2_3:35539481-35539500 None:intergenic 30.0%
ACTTTATGGGAAATATCAAG+TGG - chr2_3:35539482-35539501 None:intergenic 30.0%
! CCCATAAAGTTGAGATTTTT+AGG + chr2_3:35539492-35539511 Msa0289320:CDS 30.0%
CCCTAAAAATCTCAACTTTA+TGG - chr2_3:35539496-35539515 None:intergenic 30.0%
! TTTCTGATGATGTTGTGATT+AGG + chr2_3:35539525-35539544 Msa0289320:CDS 30.0%
! TTCTGATGATGTTGTGATTA+GGG + chr2_3:35539526-35539545 Msa0289320:CDS 30.0%
TTCCTAAGGATGAAATTGAT+AGG + chr2_3:35539630-35539649 Msa0289320:CDS 30.0%
TCCTAAGGATGAAATTGATA+GGG + chr2_3:35539631-35539650 Msa0289320:CDS 30.0%
! GCAATTAAAGAGAGGATTTT+TGG + chr2_3:35539851-35539870 Msa0289320:CDS 30.0%
AAATTCACACCTAAGTATGA+AGG - chr2_3:35540076-35540095 None:intergenic 30.0%
TACTCAATGACATTGTATCT+AGG - chr2_3:35540115-35540134 None:intergenic 30.0%
TTGTAAAATCTAAGCCTAGT+TGG - chr2_3:35540193-35540212 None:intergenic 30.0%
GATCTATGAATACTGTTAGT+TGG + chr2_3:35540394-35540413 Msa0289320:intron 30.0%
AATACTGTTAGTTGGATGAA+TGG + chr2_3:35540402-35540421 Msa0289320:intron 30.0%
!!! TGCATAAACTTGTTTTGCAT+AGG - chr2_3:35540476-35540495 None:intergenic 30.0%
GAGTTACAACATTCATTAGT+TGG + chr2_3:35540777-35540796 Msa0289320:CDS 30.0%
GTTACAACATTCATTAGTTG+GGG + chr2_3:35540779-35540798 Msa0289320:CDS 30.0%
GCAAATGAATGAATTTGGAA+TGG - chr2_3:35541293-35541312 None:intergenic 30.0%
ACTCATATTAGGGAAAAGAA+AGG - chr2_3:35541430-35541449 None:intergenic 30.0%
!! TCTGCTATTTGATCATGTTT+TGG - chr2_3:35541833-35541852 None:intergenic 30.0%
TATTCTCTAATGATTGCAGA+TGG + chr2_3:35542058-35542077 Msa0289320:intron 30.0%
!!! TATGATTTTGGTTAAGGTCT+TGG + chr2_3:35542335-35542354 Msa0289320:intron 30.0%
CTAAACCTCTGCAATTAATT+TGG - chr2_3:35542694-35542713 None:intergenic 30.0%
! GTTTCTTTTTCTGACTATGG+TGG - chr2_3:35539057-35539076 None:intergenic 35.0%
!! AGATGTAGGTGGATTAGAAA+TGG - chr2_3:35539135-35539154 None:intergenic 35.0%
TTTCTGTAATGAGATGTAGG+TGG - chr2_3:35539146-35539165 None:intergenic 35.0%
!! TGGTTTTTGGAGAGGAAATT+CGG - chr2_3:35539224-35539243 None:intergenic 35.0%
! ATTGAAGAGGAAGTGGTTTT+TGG - chr2_3:35539237-35539256 None:intergenic 35.0%
!! AATTTTGAAGGAAAAGAGGG+TGG - chr2_3:35539291-35539310 None:intergenic 35.0%
!! GTGGAATTTTGAAGGAAAAG+AGG - chr2_3:35539295-35539314 None:intergenic 35.0%
! AGGGAAATTAGGTTTTTCTG+TGG - chr2_3:35539314-35539333 None:intergenic 35.0%
AGAAGGGCAATCTTGAATAA+GGG - chr2_3:35539333-35539352 None:intergenic 35.0%
ATAAATTGGCTATCATCAGC+GGG - chr2_3:35539430-35539449 None:intergenic 35.0%
TGTAGAACACCGCAATAAAT+TGG - chr2_3:35539444-35539463 None:intergenic 35.0%
!! TTGAGATTTTTAGGGGTTCA+GGG + chr2_3:35539501-35539520 Msa0289320:CDS 35.0%
! TGATGTTGTGATTAGGGTTT+TGG + chr2_3:35539532-35539551 Msa0289320:CDS 35.0%
ATGGGGAAAAGTCAAATTGT+TGG + chr2_3:35539578-35539597 Msa0289320:CDS 35.0%
!!! TGGTGTCGTTAATTTTCTTG+TGG + chr2_3:35539598-35539617 Msa0289320:CDS 35.0%
ACCCTATCAATTTCATCCTT+AGG - chr2_3:35539635-35539654 None:intergenic 35.0%
GGTTGTTAGATTGTTTCCTA+GGG + chr2_3:35539652-35539671 Msa0289320:CDS 35.0%
TAGATTGTTTCCTAGGGTTT+CGG + chr2_3:35539658-35539677 Msa0289320:CDS 35.0%
! ATTCATGAGTTGAGGAGTTT+GGG + chr2_3:35539713-35539732 Msa0289320:CDS 35.0%
!! TAAAGAGAGGATTTTTGGAG+AGG + chr2_3:35539856-35539875 Msa0289320:CDS 35.0%
!! AAAGAGAGGATTTTTGGAGA+GGG + chr2_3:35539857-35539876 Msa0289320:CDS 35.0%
!!! TTTTGAAGTGAAGTTGAGAG+TGG + chr2_3:35539895-35539914 Msa0289320:CDS 35.0%
CAACACCATATTTCATCCTT+TGG - chr2_3:35540036-35540055 None:intergenic 35.0%
CATGAAGTTCCTTCATACTT+AGG + chr2_3:35540064-35540083 Msa0289320:CDS 35.0%
! TTGAAAGGAAAAGGTGCAAT+TGG + chr2_3:35540136-35540155 Msa0289320:CDS 35.0%
! TGAAAGGAAAAGGTGCAATT+GGG + chr2_3:35540137-35540156 Msa0289320:CDS 35.0%
TCAAGATGTGAAGAACATGA+AGG + chr2_3:35540342-35540361 Msa0289320:CDS 35.0%
!! ACTCAAAGTACTGCAGAAAA+AGG + chr2_3:35540541-35540560 Msa0289320:intron 35.0%
!! CTCAAAGTACTGCAGAAAAA+GGG + chr2_3:35540542-35540561 Msa0289320:intron 35.0%
!! TCAAAGTACTGCAGAAAAAG+GGG + chr2_3:35540543-35540562 Msa0289320:intron 35.0%
AACATGCGAATTCACAGATT+TGG - chr2_3:35540629-35540648 None:intergenic 35.0%
! TGTTTGGAACAATAGAGTTG+AGG + chr2_3:35540746-35540765 Msa0289320:CDS 35.0%
TGAATGTTGTAACTCCCTAA+TGG - chr2_3:35540772-35540791 None:intergenic 35.0%
TGTTGATACTCAACAGTGTA+TGG + chr2_3:35540806-35540825 Msa0289320:CDS 35.0%
ATCCACAATTGCATCACAAT+CGG + chr2_3:35540916-35540935 Msa0289320:intron 35.0%
AAACTGTTTCAAGGGCAATT+TGG + chr2_3:35541230-35541249 Msa0289320:intron 35.0%
AACTGTTTCAAGGGCAATTT+GGG + chr2_3:35541231-35541250 Msa0289320:intron 35.0%
ATTGAAAGAACATGACTGCA+TGG - chr2_3:35541393-35541412 None:intergenic 35.0%
! CTATACTGATTGTCATAGCA+AGG + chr2_3:35542114-35542133 Msa0289320:intron 35.0%
ATATCAACTTCCTTTGTCCA+TGG + chr2_3:35542428-35542447 Msa0289320:intron 35.0%
CTATTGAACAATTGCGATTC+TGG + chr2_3:35542503-35542522 Msa0289320:intron 35.0%
! TATTCCATGCCTTCTCTTTT+TGG + chr2_3:35542572-35542591 Msa0289320:intron 35.0%
AAGATCCAACCAAAAAGAGA+AGG - chr2_3:35542584-35542603 None:intergenic 35.0%
ATGAATCTACTTGCATCTCT+AGG + chr2_3:35542641-35542660 Msa0289320:intron 35.0%
TGAATCTACTTGCATCTCTA+GGG + chr2_3:35542642-35542661 Msa0289320:intron 35.0%
GACTTCCAAATTAATTGCAG+AGG + chr2_3:35542686-35542705 Msa0289320:intron 35.0%
TAATTGCAGAGGTTTAGTCT+TGG + chr2_3:35542697-35542716 Msa0289320:intron 35.0%
!! GTTTAGTCTTGGAGTTATGT+TGG + chr2_3:35542708-35542727 Msa0289320:intron 35.0%
ATGCTTTCAGAGTTCTTGAA+AGG + chr2_3:35542850-35542869 Msa0289320:intron 35.0%
TGCTTTCAGAGTTCTTGAAA+GGG + chr2_3:35542851-35542870 Msa0289320:intron 35.0%
! CCAGAATTTGTTCCAAAGAT+CGG + chr2_3:35542912-35542931 Msa0289320:CDS 35.0%
!! TGTAGGTGGATTAGAAATGG+TGG - chr2_3:35539132-35539151 None:intergenic 40.0%
GCTAATCTCTTCCAATCCTT+CGG + chr2_3:35539179-35539198 Msa0289320:CDS 40.0%
AATTCGGAAGAGAAGAGGAA+GGG - chr2_3:35539208-35539227 None:intergenic 40.0%
AAATTCGGAAGAGAAGAGGA+AGG - chr2_3:35539209-35539228 None:intergenic 40.0%
CAGAAGGGCAATCTTGAATA+AGG - chr2_3:35539334-35539353 None:intergenic 40.0%
TAAATTGGCTATCATCAGCG+GGG - chr2_3:35539429-35539448 None:intergenic 40.0%
!! GTTGAGATTTTTAGGGGTTC+AGG + chr2_3:35539500-35539519 Msa0289320:CDS 40.0%
!! TGTTGTGATTAGGGTTTTGG+AGG + chr2_3:35539535-35539554 Msa0289320:CDS 40.0%
ATTTCCCACTGCAGTTGTAA+TGG + chr2_3:35539559-35539578 Msa0289320:CDS 40.0%
TTTCCCACTGCAGTTGTAAT+GGG + chr2_3:35539560-35539579 Msa0289320:CDS 40.0%
GGGTTGTTAGATTGTTTCCT+AGG + chr2_3:35539651-35539670 Msa0289320:CDS 40.0%
AGATTGTTTCCTAGGGTTTC+GGG + chr2_3:35539659-35539678 Msa0289320:CDS 40.0%
!! AGCTGTTGATTCATGAGTTG+AGG + chr2_3:35539705-35539724 Msa0289320:CDS 40.0%
! GATTCATGAGTTGAGGAGTT+TGG + chr2_3:35539712-35539731 Msa0289320:CDS 40.0%
! TTCATGAGTTGAGGAGTTTG+GGG + chr2_3:35539714-35539733 Msa0289320:CDS 40.0%
! TGGAGATTGGGGAATTTTCA+CGG + chr2_3:35539792-35539811 Msa0289320:CDS 40.0%
! TGTTGCAGAGTTTGAAATGC+AGG + chr2_3:35539825-35539844 Msa0289320:CDS 40.0%
! GTTGCAGAGTTTGAAATGCA+GGG + chr2_3:35539826-35539845 Msa0289320:CDS 40.0%
!! TTTTTGGAGAGGGTTTGGTT+AGG + chr2_3:35539867-35539886 Msa0289320:CDS 40.0%
!! TTTTGGAGAGGGTTTGGTTA+GGG + chr2_3:35539868-35539887 Msa0289320:CDS 40.0%
!! TTGAGAGTGGATTGTTTGTG+TGG + chr2_3:35539908-35539927 Msa0289320:CDS 40.0%
! GAACCAAGGTTGATTGCTTA+CGG + chr2_3:35539974-35539993 Msa0289320:CDS 40.0%
! TGGGTTTGAAGTTGGATTGA+AGG + chr2_3:35540156-35540175 Msa0289320:CDS 40.0%
AGGACATCATCAAACCAACT+AGG + chr2_3:35540176-35540195 Msa0289320:CDS 40.0%
!!! ATATGGGAGATTTTCGGGTA+AGG + chr2_3:35540249-35540268 Msa0289320:CDS 40.0%
GTTAAAAGTAAGCATCCAGC+TGG + chr2_3:35540277-35540296 Msa0289320:CDS 40.0%
TTTGAGGAAACTTCTGTGGT+TGG - chr2_3:35540318-35540337 None:intergenic 40.0%
CATGTTCTTCACATCTTGAC+CGG - chr2_3:35540341-35540360 None:intergenic 40.0%
GAAGAACATGAAGGCTTTCA+TGG + chr2_3:35540351-35540370 Msa0289320:CDS 40.0%
TCATGGATTCAATGCTGTAG+TGG + chr2_3:35540368-35540387 Msa0289320:intron 40.0%
CGTGTTCAAGCTCAAAATCA+TGG - chr2_3:35540429-35540448 None:intergenic 40.0%
TGCAGTACTTTGAGTAATGC+AGG - chr2_3:35540536-35540555 None:intergenic 40.0%
ACAATAGAGTTGAGGCCATT+AGG + chr2_3:35540754-35540773 Msa0289320:CDS 40.0%
CAATAGAGTTGAGGCCATTA+GGG + chr2_3:35540755-35540774 Msa0289320:CDS 40.0%
! TACCGATTGTGATGCAATTG+TGG - chr2_3:35540921-35540940 None:intergenic 40.0%
TTGCATCACAATCGGTATTC+TGG + chr2_3:35540924-35540943 Msa0289320:intron 40.0%
CGCTATTATCCTCATTGTAG+CGG - chr2_3:35541095-35541114 None:intergenic 40.0%
CGCTACAATGAGGATAATAG+CGG + chr2_3:35541093-35541112 Msa0289320:intron 40.0%
ACGGCGCAAATGAATGAATT+TGG - chr2_3:35541298-35541317 None:intergenic 40.0%
TTAGGGCTCACAAACTTGAA+CGG - chr2_3:35541317-35541336 None:intergenic 40.0%
! GAGGAAGAAGAAAAGCATGA+TGG - chr2_3:35541521-35541540 None:intergenic 40.0%
TAGGATTGACCACCTAGATT+TGG + chr2_3:35541881-35541900 Msa0289320:intron 40.0%
AGGATTGACCACCTAGATTT+GGG + chr2_3:35541882-35541901 Msa0289320:intron 40.0%
AACCCCAAAAGCTATCTCAA+GGG + chr2_3:35541918-35541937 Msa0289320:intron 40.0%
TAACTTTAGCCAGTTGTCCA+TGG - chr2_3:35542448-35542467 None:intergenic 40.0%
ATGGACAACTGGCTAAAGTT+AGG + chr2_3:35542447-35542466 Msa0289320:intron 40.0%
TGGACAACTGGCTAAAGTTA+GGG + chr2_3:35542448-35542467 Msa0289320:intron 40.0%
TTGAACAATTGCGATTCTGG+AGG + chr2_3:35542506-35542525 Msa0289320:intron 40.0%
TGAACAATTGCGATTCTGGA+GGG + chr2_3:35542507-35542526 Msa0289320:intron 40.0%
! AGAGAAGGCATGGAATATCT+CGG - chr2_3:35542569-35542588 None:intergenic 40.0%
! CGATGGTTGACTTAAGAAAG+TGG + chr2_3:35542733-35542752 Msa0289320:intron 40.0%
!! AAGTGGATTGCAACAAGAAG+TGG + chr2_3:35542750-35542769 Msa0289320:intron 40.0%
TCTTGAAAGGGTGACATTAC+AGG + chr2_3:35542863-35542882 Msa0289320:CDS 40.0%
!! CCGATCTTTGGAACAAATTC+TGG - chr2_3:35542915-35542934 None:intergenic 40.0%
ATCAACTCAAGTCCGATCTT+TGG - chr2_3:35542927-35542946 None:intergenic 40.0%
! TATTGGCATTTGGGCTTTTC+AGG + chr2_3:35542952-35542971 Msa0289320:CDS 40.0%
! ATTGGCATTTGGGCTTTTCA+GGG + chr2_3:35542953-35542972 Msa0289320:CDS 40.0%
GAGGAAATTCGGAAGAGAAG+AGG - chr2_3:35539213-35539232 None:intergenic 45.0%
!! AGAGGAAGTGGTTTTTGGAG+AGG - chr2_3:35539232-35539251 None:intergenic 45.0%
! GATCGGTATTGAAGAGGAAG+TGG - chr2_3:35539244-35539263 None:intergenic 45.0%
GGTAAGAGATTGACGAAGGT+GGG - chr2_3:35539270-35539289 None:intergenic 45.0%
TGGTAAGAGATTGACGAAGG+TGG - chr2_3:35539271-35539290 None:intergenic 45.0%
TCAAGATTGCCCTTCTGTGT+TGG + chr2_3:35539337-35539356 Msa0289320:CDS 45.0%
ATTGGGGTTCCAACACAGAA+GGG - chr2_3:35539349-35539368 None:intergenic 45.0%
AATTGGGGTTCCAACACAGA+AGG - chr2_3:35539350-35539369 None:intergenic 45.0%
TTCCCACTGCAGTTGTAATG+GGG + chr2_3:35539561-35539580 Msa0289320:CDS 45.0%
TTCCCCATTACAACTGCAGT+GGG - chr2_3:35539566-35539585 None:intergenic 45.0%
TTTCCCCATTACAACTGCAG+TGG - chr2_3:35539567-35539586 None:intergenic 45.0%
! TGTGGAATTTGGGGTTCCTA+AGG + chr2_3:35539616-35539635 Msa0289320:CDS 45.0%
TTTCCTAGGGTTTCGGGATT+TGG + chr2_3:35539665-35539684 Msa0289320:CDS 45.0%
ATTCCAAATCCCGAAACCCT+AGG - chr2_3:35539671-35539690 None:intergenic 45.0%
! GGTTTCGGGATTTGGAATTG+AGG + chr2_3:35539673-35539692 Msa0289320:CDS 45.0%
! CGGGATTTGGAATTGAGGAT+AGG + chr2_3:35539678-35539697 Msa0289320:CDS 45.0%
! TGTTAGGGATCCAAGGGTTT+TGG + chr2_3:35539766-35539785 Msa0289320:CDS 45.0%
! GTTAGGGATCCAAGGGTTTT+GGG + chr2_3:35539767-35539786 Msa0289320:CDS 45.0%
ATCTCCATTCCCAAAACCCT+TGG - chr2_3:35539779-35539798 None:intergenic 45.0%
!!! AGGGTTTTGGGAATGGAGAT+TGG + chr2_3:35539779-35539798 Msa0289320:CDS 45.0%
!!! GGGTTTTGGGAATGGAGATT+GGG + chr2_3:35539780-35539799 Msa0289320:CDS 45.0%
!!! GGTTTTGGGAATGGAGATTG+GGG + chr2_3:35539781-35539800 Msa0289320:CDS 45.0%
!! GAGGATTTTTGGAGAGGGTT+TGG + chr2_3:35539862-35539881 Msa0289320:CDS 45.0%
! GTGGATTGTTTGTGTGGTCA+CGG + chr2_3:35539914-35539933 Msa0289320:CDS 45.0%
TTGTTTGTGTGGTCACGGTT+TGG + chr2_3:35539919-35539938 Msa0289320:CDS 45.0%
! ACACCTTCAAAGCATCCCTA+CGG - chr2_3:35539946-35539965 None:intergenic 45.0%
!! TGCTTTGAAGGTGTTGTGGA+AGG + chr2_3:35539952-35539971 Msa0289320:CDS 45.0%
AAGCCGTAAGCAATCAACCT+TGG - chr2_3:35539980-35539999 None:intergenic 45.0%
! AAGGTTGATTGCTTACGGCT+TGG + chr2_3:35539979-35539998 Msa0289320:CDS 45.0%
! GGTGCAATTGGGTTTGAAGT+TGG + chr2_3:35540148-35540167 Msa0289320:CDS 45.0%
CCACAGAAGTTTCCTCAAAC+CGG + chr2_3:35540319-35540338 Msa0289320:CDS 45.0%
!! TTCACATCTTGACCGGTTTG+AGG - chr2_3:35540334-35540353 None:intergenic 45.0%
AGTACTGCAGAAAAAGGGGA+AGG + chr2_3:35540547-35540566 Msa0289320:intron 45.0%
GTGATGCAATTGTGGATGCA+AGG - chr2_3:35540913-35540932 None:intergenic 45.0%
CAGAGCGATGAAAACGGTTA+GGG - chr2_3:35541334-35541353 None:intergenic 45.0%
ACAGAGCGATGAAAACGGTT+AGG - chr2_3:35541335-35541354 None:intergenic 45.0%
ACGGAACAGAGCGATGAAAA+CGG - chr2_3:35541340-35541359 None:intergenic 45.0%
CGATGGGTGCAAAACTTGAA+CGG - chr2_3:35541359-35541378 None:intergenic 45.0%
GAAAGAACATGACTGCATGG+TGG - chr2_3:35541390-35541409 None:intergenic 45.0%
! ATAGCGGGGATAGCTTATAG+CGG - chr2_3:35541860-35541879 None:intergenic 45.0%
ATAAGCTATCCCCGCTATCT+AGG + chr2_3:35541862-35541881 Msa0289320:intron 45.0%
AGGTGGTCAATCCTAGATAG+CGG - chr2_3:35541876-35541895 None:intergenic 45.0%
AAACCTAGCCCAAATCTAGG+TGG - chr2_3:35541893-35541912 None:intergenic 45.0%
CTCAAACCTAGCCCAAATCT+AGG - chr2_3:35541896-35541915 None:intergenic 45.0%
CAACCCCAAAAGCTATCTCA+AGG + chr2_3:35541917-35541936 Msa0289320:intron 45.0%
ACCCCAAAAGCTATCTCAAG+GGG + chr2_3:35541919-35541938 Msa0289320:intron 45.0%
! GTTGGAGCGGAAAACTTGTT+TGG + chr2_3:35542362-35542381 Msa0289320:CDS 45.0%
TTCCTTTGTCCATGGACAAC+TGG + chr2_3:35542436-35542455 Msa0289320:intron 45.0%
TGGAGGGTTTGCATTCGATA+TGG + chr2_3:35542523-35542542 Msa0289320:intron 45.0%
CCAACCAAAAAGAGAAGGCA+TGG - chr2_3:35542579-35542598 None:intergenic 45.0%
!! CCATGCCTTCTCTTTTTGGT+TGG + chr2_3:35542576-35542595 Msa0289320:intron 45.0%
! ATCTACTTGCATCTCTAGGG+AGG + chr2_3:35542645-35542664 Msa0289320:intron 45.0%
! TAGGGAGGCATATCTTGTTC+TGG + chr2_3:35542660-35542679 Msa0289320:intron 45.0%
TTGGAGTTATGTTGGTGCGA+TGG + chr2_3:35542716-35542735 Msa0289320:intron 45.0%
GTGACATTACAGGAAGCCAA+TGG + chr2_3:35542873-35542892 Msa0289320:CDS 45.0%
!! GGAACAAATTCTGGAATCCG+TGG - chr2_3:35542906-35542925 None:intergenic 45.0%
!! ATGTTTATAAATAATAATAT+AGG + chr2_3:35540953-35540972 Msa0289320:intron 5.0%
AGGAAGGGAAACCGAAGGAT+TGG - chr2_3:35539193-35539212 None:intergenic 50.0%
AGAAGAGGAAGGGAAACCGA+AGG - chr2_3:35539198-35539217 None:intergenic 50.0%
! GGGATGGATCGGTATTGAAG+AGG - chr2_3:35539250-35539269 None:intergenic 50.0%
TTGACGAAGGTGGGATGGAT+CGG - chr2_3:35539261-35539280 None:intergenic 50.0%
AGAGATTGACGAAGGTGGGA+TGG - chr2_3:35539266-35539285 None:intergenic 50.0%
GGGTGGTAAGAGATTGACGA+AGG - chr2_3:35539274-35539293 None:intergenic 50.0%
CGGGGAAGGATTAGAAAGCT+TGG - chr2_3:35539411-35539430 None:intergenic 50.0%
GGAGGTTGTTAGGGATCCAA+GGG + chr2_3:35539760-35539779 Msa0289320:CDS 50.0%
!!! GGATCCAAGGGTTTTGGGAA+TGG + chr2_3:35539772-35539791 Msa0289320:CDS 50.0%
! GCAGAGTTTGAAATGCAGGG+AGG + chr2_3:35539829-35539848 Msa0289320:CDS 50.0%
GCAGGGAGGCAATTAAAGAG+AGG + chr2_3:35539843-35539862 Msa0289320:CDS 50.0%
!! GGGATGCTTTGAAGGTGTTG+TGG + chr2_3:35539948-35539967 Msa0289320:CDS 50.0%
! AGGTGTTGTGGAAGGAACCA+AGG + chr2_3:35539960-35539979 Msa0289320:CDS 50.0%
! GTTGATTGCTTACGGCTTGG+AGG + chr2_3:35539982-35540001 Msa0289320:CDS 50.0%
GTAAGCATCCAGCTGGACTT+TGG + chr2_3:35540284-35540303 Msa0289320:CDS 50.0%
AACAGCTTCCAAAGTCCAGC+TGG - chr2_3:35540295-35540314 None:intergenic 50.0%
! CCGGTTTGAGGAAACTTCTG+TGG - chr2_3:35540322-35540341 None:intergenic 50.0%
! ATTCCATGAGCTGCTGCTTG+TGG - chr2_3:35540727-35540746 None:intergenic 50.0%
GCAGCAGCTCATGGAATGTT+TGG + chr2_3:35540730-35540749 Msa0289320:CDS 50.0%
! TCTCGCGCTATTGACTACGT+AGG - chr2_3:35541035-35541054 None:intergenic 50.0%
AGCGGAGCAGTTAACGATAG+TGG + chr2_3:35541111-35541130 Msa0289320:intron 50.0%
ATGACTGCATGGTGGCTGTA+TGG - chr2_3:35541382-35541401 None:intergenic 50.0%
TAGCGGGGATAGCTTATAGC+GGG - chr2_3:35541859-35541878 None:intergenic 50.0%
GTGGTCAATCCTAGATAGCG+GGG - chr2_3:35541874-35541893 None:intergenic 50.0%
GGTGGTCAATCCTAGATAGC+GGG - chr2_3:35541875-35541894 None:intergenic 50.0%
TGACCACCTAGATTTGGGCT+AGG + chr2_3:35541887-35541906 Msa0289320:intron 50.0%
! CCCCCTTGAGATAGCTTTTG+GGG - chr2_3:35541923-35541942 None:intergenic 50.0%
CCCCAAAAGCTATCTCAAGG+GGG + chr2_3:35541920-35541939 Msa0289320:intron 50.0%
! CCCCCCTTGAGATAGCTTTT+GGG - chr2_3:35541924-35541943 None:intergenic 50.0%
CCCAAAAGCTATCTCAAGGG+GGG + chr2_3:35541921-35541940 Msa0289320:intron 50.0%
! TCCCCCCTTGAGATAGCTTT+TGG - chr2_3:35541925-35541944 None:intergenic 50.0%
AAAAGCTATCTCAAGGGGGG+AGG + chr2_3:35541924-35541943 Msa0289320:intron 50.0%
GACTCTTCCAAAGCTGCTGT+GGG - chr2_3:35542086-35542105 None:intergenic 50.0%
AGACTCTTCCAAAGCTGCTG+TGG - chr2_3:35542087-35542106 None:intergenic 50.0%
GGTTAAGGTCTTGGCTCAGT+TGG + chr2_3:35542344-35542363 Msa0289320:intron 50.0%
AGCCAGTTGTCCATGGACAA+AGG - chr2_3:35542441-35542460 None:intergenic 50.0%
!! AATTCTGGAATCCGTGGCAC+AGG - chr2_3:35542900-35542919 None:intergenic 50.0%
TTGGCTATCATCAGCGGGGA+AGG - chr2_3:35539425-35539444 None:intergenic 55.0%
!! TTTGGGGTTTTCCAGCCGAG+AGG + chr2_3:35539730-35539749 Msa0289320:CDS 55.0%
! GTTTTCCAGCCGAGAGGTCA+GGG + chr2_3:35539736-35539755 Msa0289320:CDS 55.0%
CGGAGGTTGTTAGGGATCCA+AGG + chr2_3:35539759-35539778 Msa0289320:CDS 55.0%
!! TGGTCACGGTTTGGTCCGTA+GGG + chr2_3:35539928-35539947 Msa0289320:CDS 55.0%
GGTCCGTAGGGATGCTTTGA+AGG + chr2_3:35539940-35539959 Msa0289320:CDS 55.0%
TAGCGGCAGAGTGGAGTAGA+GGG + chr2_3:35541066-35541085 Msa0289320:intron 55.0%
! TTAACGATAGTGGCCGCTCC+AGG + chr2_3:35541121-35541140 Msa0289320:intron 55.0%
CATGGTGGCTGTATGGCGAT+GGG - chr2_3:35541375-35541394 None:intergenic 55.0%
GATGGATCCCACAGCAGCTT+TGG + chr2_3:35542076-35542095 Msa0289320:intron 55.0%
AGGTCTTGGCTCAGTTGGAG+CGG + chr2_3:35542349-35542368 Msa0289320:intron 55.0%
AAGCCAATGGACCTGTGCCA+CGG + chr2_3:35542886-35542905 Msa0289320:CDS 55.0%
AATCCGTGGCACAGGTCCAT+TGG - chr2_3:35542892-35542911 None:intergenic 55.0%
! GGTTTTCCAGCCGAGAGGTC+AGG + chr2_3:35539735-35539754 Msa0289320:CDS 60.0%
AGGTCAGGGCGGAGGTTGTT+AGG + chr2_3:35539750-35539769 Msa0289320:CDS 60.0%
GGTCAGGGCGGAGGTTGTTA+GGG + chr2_3:35539751-35539770 Msa0289320:CDS 60.0%
!! GTGGTCACGGTTTGGTCCGT+AGG + chr2_3:35539927-35539946 Msa0289320:CDS 60.0%
! CCATGAGCTGCTGCTTGTGG+TGG - chr2_3:35540724-35540743 None:intergenic 60.0%
CCACCACAAGCAGCAGCTCA+TGG + chr2_3:35540721-35540740 Msa0289320:CDS 60.0%
ACTCCACTCTGCCGCTACAG+CGG - chr2_3:35541063-35541082 None:intergenic 60.0%
GTAGCGGCAGAGTGGAGTAG+AGG + chr2_3:35541065-35541084 Msa0289320:intron 60.0%
AGAGGGTCGCCGCTACAATG+AGG + chr2_3:35541083-35541102 Msa0289320:intron 60.0%
CGCCAAGATCTCACCTGGAG+CGG - chr2_3:35541137-35541156 None:intergenic 60.0%
CGCTCCAGGTGAGATCTTGG+CGG + chr2_3:35541135-35541154 Msa0289320:intron 60.0%
CAGGTGAGATCTTGGCGGAG+CGG + chr2_3:35541140-35541159 Msa0289320:intron 60.0%
AGGTGAGATCTTGGCGGAGC+GGG + chr2_3:35541141-35541160 Msa0289320:intron 60.0%
GCATGGTGGCTGTATGGCGA+TGG - chr2_3:35541376-35541395 None:intergenic 60.0%
TTCCAGCCGAGAGGTCAGGG+CGG + chr2_3:35539739-35539758 Msa0289320:CDS 65.0%
CAACCTCCGCCCTGACCTCT+CGG - chr2_3:35539748-35539767 None:intergenic 65.0%
GCGAGATAGCGCCGCTGTAG+CGG + chr2_3:35541049-35541068 Msa0289320:intron 65.0%
GGCCGCTCCAGGTGAGATCT+TGG + chr2_3:35541132-35541151 Msa0289320:intron 65.0%
CGCTCCGCCAAGATCTCACC+TGG - chr2_3:35541142-35541161 None:intergenic 65.0%
GGTGAGATCTTGGCGGAGCG+GGG + chr2_3:35541142-35541161 Msa0289320:intron 65.0%
CTCCGCCCTGACCTCTCGGC+TGG - chr2_3:35539744-35539763 None:intergenic 75.0%
CAGCCGAGAGGTCAGGGCGG+AGG + chr2_3:35539742-35539761 Msa0289320:CDS 75.0%
GCGCCGCTGTAGCGGCAGAG+TGG + chr2_3:35541057-35541076 Msa0289320:intron 75.0%
! GCGGAGCGGGGTCGCAGAGC+AGG + chr2_3:35541154-35541173 Msa0289320:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 35539041 35542992 35539041 ID=Msa0289320;Name=Msa0289320
chr2_3 mRNA 35539041 35542992 35539041 ID=Msa0289320-mRNA-1;Parent=Msa0289320;Name=Msa0289320-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0.25|0|1|1|1|5|0|614
chr2_3 exon 35539041 35540383 35539041 ID=Msa0289320-mRNA-1:exon:11509;Parent=Msa0289320-mRNA-1
chr2_3 exon 35540626 35540827 35540626 ID=Msa0289320-mRNA-1:exon:11510;Parent=Msa0289320-mRNA-1
chr2_3 exon 35542132 35542248 35542132 ID=Msa0289320-mRNA-1:exon:11511;Parent=Msa0289320-mRNA-1
chr2_3 exon 35542351 35542400 35542351 ID=Msa0289320-mRNA-1:exon:11512;Parent=Msa0289320-mRNA-1
chr2_3 exon 35542860 35542992 35542860 ID=Msa0289320-mRNA-1:exon:11513;Parent=Msa0289320-mRNA-1
chr2_3 CDS 35539041 35540383 35539041 ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1
chr2_3 CDS 35540626 35540827 35540626 ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1
chr2_3 CDS 35542132 35542248 35542132 ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1
chr2_3 CDS 35542351 35542400 35542351 ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1
chr2_3 CDS 35542860 35542992 35542860 ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1
Gene Sequence

>Msa0289320

ATGGGGTTGGGTTCCACCATAGTCAGAAAAAGAAACAACGTCCTTATTCTTGTAAGAACCACTTCTTCAACTAATAACAACTACTTCTCCACCATTTCTAATCCACCTACATCTCATTACAGAAAACAAATCACTCTCGCTAATCTCTTCCAATCCTTCGGTTTCCCTTCCTCTTCTCTTCCGAATTTCCTCTCCAAAAACCACTTCCTCTTCAATACCGATCCATCCCACCTTCGTCAATCTCTTACCACCCTCTTTTCCTTCAAAATTCCACAGAAAAACCTAATTTCCCTTATTCAAGATTGCCCTTCTGTGTTGGAACCCCAATTTCTACTTAATTGGGAATTGGGTTTTCCAAAATTCATATCCAAGCTTTCTAATCCTTCCCCGCTGATGATAGCCAATTTATTGCGGTGTTCTACAACTTTCCATTTAAACCCACTTGATATTTCCCATAAAGTTGAGATTTTTAGGGGTTCAGGGTTTTCTGATGATGTTGTGATTAGGGTTTTGGAGGAATTTCCCACTGCAGTTGTAATGGGGAAAAGTCAAATTGTTGGTGTCGTTAATTTTCTTGTGGAATTTGGGGTTCCTAAGGATGAAATTGATAGGGTTGTTAGATTGTTTCCTAGGGTTTCGGGATTTGGAATTGAGGATAGGTTGAAGCTGTTGATTCATGAGTTGAGGAGTTTGGGGTTTTCCAGCCGAGAGGTCAGGGCGGAGGTTGTTAGGGATCCAAGGGTTTTGGGAATGGAGATTGGGGAATTTTCACGGTATTTGAAGTTGTTGCAGAGTTTGAAATGCAGGGAGGCAATTAAAGAGAGGATTTTTGGAGAGGGTTTGGTTAGGGCTTGTTTTGAAGTGAAGTTGAGAGTGGATTGTTTGTGTGGTCACGGTTTGGTCCGTAGGGATGCTTTGAAGGTGTTGTGGAAGGAACCAAGGTTGATTGCTTACGGCTTGGAGGATATTGAAAAGAAGATTGAGTTTTTAATCCAAAGGATGAAATATGGTGTTGATTGTTTGCATGAAGTTCCTTCATACTTAGGTGTGAATTTTGAAAAACAGATTGTTCCTAGATACAATGTCATTGAGTATTTGAAAGGAAAAGGTGCAATTGGGTTTGAAGTTGGATTGAAGGACATCATCAAACCAACTAGGCTTAGATTTTACAATCTTTACGTTAAGCCTTATCCAGAATGTGAAAAAATATATGGGAGATTTTCGGGTAAGGTCGAAGTTAAAAGTAAGCATCCAGCTGGACTTTGGAAGCTGTTCCAACCACAGAAGTTTCCTCAAACCGGTCAAGATGTGAAGAACATGAAGGCTTTCATGGATTCAATGCTCCAAATCTGTGAATTCGCATGTTCAGATACTCAAAAAGTTAAACGTCTGCAGATAGAAGACAAGAATTATAAAAATGTTAGTGGAAAAACTTCAACCACCACAAGCAGCAGCTCATGGAATGTTTGGAACAATAGAGTTGAGGCCATTAGGGAGTTACAACATTCATTAGTTGGGGATGTTGTTGATACTCAACAGTGTATGCAAGGATGTGCTAATGCAGTGCTGAAGTGCGAAATGCTTATTCTGACAATTGTACAGAGATTTATTGGGAATTTTGAAATTCAATCTTCCAGAATAAAATCTGTAAAACTCTTGAAGGTCTTGGCTCAGTTGGAGCGGAAAACTTGTTTGGAGTTTATAAAGAATGGAGTTCTTGAAAGGGTGACATTACAGGAAGCCAATGGACCTGTGCCACGGATTCCAGAATTTGTTCCAAAGATCGGACTTGAGTTGATCAAAATATTGGCATTTGGGCTTTTCAGGGACAAAATGTGCCGATGA

Protein sequence

>Msa0289320

MGLGSTIVRKRNNVLILVRTTSSTNNNYFSTISNPPTSHYRKQITLANLFQSFGFPSSSLPNFLSKNHFLFNTDPSHLRQSLTTLFSFKIPQKNLISLIQDCPSVLEPQFLLNWELGFPKFISKLSNPSPLMIANLLRCSTTFHLNPLDISHKVEIFRGSGFSDDVVIRVLEEFPTAVVMGKSQIVGVVNFLVEFGVPKDEIDRVVRLFPRVSGFGIEDRLKLLIHELRSLGFSSREVRAEVVRDPRVLGMEIGEFSRYLKLLQSLKCREAIKERIFGEGLVRACFEVKLRVDCLCGHGLVRRDALKVLWKEPRLIAYGLEDIEKKIEFLIQRMKYGVDCLHEVPSYLGVNFEKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRLRFYNLYVKPYPECEKIYGRFSGKVEVKSKHPAGLWKLFQPQKFPQTGQDVKNMKAFMDSMLQICEFACSDTQKVKRLQIEDKNYKNVSGKTSTTTSSSSWNVWNNRVEAIRELQHSLVGDVVDTQQCMQGCANAVLKCEMLILTIVQRFIGNFEIQSSRIKSVKLLKVLAQLERKTCLEFIKNGVLERVTLQEANGPVPRIPEFVPKIGLELIKILAFGLFRDKMCR*