Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289320 | KEH38164.1 | 88.736 | 435 | 46 | 2 | 14 | 448 | 1 | 432 | 0.0 | 780 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289320 | sp|Q9C6A1|MTEFE_ARATH | 48.643 | 442 | 223 | 2 | 6 | 447 | 7 | 444 | 1.70e-143 | 426 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289320 | A0A072V7X6 | 88.736 | 435 | 46 | 2 | 14 | 448 | 1 | 432 | 0.0 | 780 |
Gene ID | Type | Classification |
---|---|---|
Msa0289320 | TR | mTERF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289320 | MtrunA17_Chr2g0308761 | 88.276 | 435 | 48 | 2 | 14 | 448 | 1 | 432 | 0.0 | 777 |
Msa0289320 | MtrunA17_Chr2g0308431 | 93.407 | 91 | 4 | 1 | 334 | 424 | 1 | 89 | 2.65e-52 | 175 |
Msa0289320 | MtrunA17_Chr4g0020831 | 93.407 | 91 | 4 | 1 | 334 | 424 | 1 | 89 | 1.53e-51 | 173 |
Msa0289320 | MtrunA17_Chr2g0308421 | 84.615 | 52 | 7 | 1 | 527 | 577 | 1 | 52 | 9.96e-20 | 82.8 |
Msa0289320 | MtrunA17_Chr1g0160961 | 78.689 | 61 | 12 | 1 | 518 | 577 | 655 | 715 | 1.65e-19 | 93.6 |
Msa0289320 | MtrunA17_Chr5g0419891 | 62.338 | 77 | 13 | 2 | 517 | 577 | 515 | 591 | 2.44e-16 | 83.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289320 | AT1G74120.1 | 48.643 | 442 | 223 | 2 | 6 | 447 | 7 | 444 | 1.73e-144 | 426 |
Msa0289320 | AT5G54180.1 | 28.829 | 222 | 152 | 5 | 153 | 370 | 253 | 472 | 3.04e-14 | 76.3 |
Msa0289320 | AT1G62010.1 | 27.083 | 192 | 121 | 5 | 211 | 399 | 213 | 388 | 4.85e-11 | 65.5 |
Find 156 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCCCAATTTCTACTTAAT+TGG | 0.102106 | 2_3:+35539360 | Msa0289320:CDS |
GAAAGCTTGGATATGAATTT+TGG | 0.127070 | 2_3:-35539395 | None:intergenic |
ATTCCCAATTAAGTAGAAAT+TGG | 0.160887 | 2_3:-35539364 | None:intergenic |
CCGATCTTTGGAACAAATTC+TGG | 0.176573 | 2_3:-35542912 | None:intergenic |
ACAATTGTACAGAGATTTAT+TGG | 0.191689 | 2_3:+35542177 | Msa0289320:CDS |
AATCTTGAATAAGGGAAATT+AGG | 0.210110 | 2_3:-35539322 | None:intergenic |
TGATGTTGTGATTAGGGTTT+TGG | 0.225835 | 2_3:+35539532 | Msa0289320:CDS |
AAATATCAAGTGGGTTTAAA+TGG | 0.226943 | 2_3:-35539469 | None:intergenic |
TTTCCTAGGGTTTCGGGATT+TGG | 0.231060 | 2_3:+35539665 | Msa0289320:CDS |
TGTTAGGGATCCAAGGGTTT+TGG | 0.241406 | 2_3:+35539766 | Msa0289320:CDS |
TTCTGATGATGTTGTGATTA+GGG | 0.254350 | 2_3:+35539526 | Msa0289320:CDS |
ATTCATGAGTTGAGGAGTTT+GGG | 0.255104 | 2_3:+35539713 | Msa0289320:CDS |
AGATTGTTTCCTAGGGTTTC+GGG | 0.259151 | 2_3:+35539659 | Msa0289320:CDS |
TAGATTGTTTCCTAGGGTTT+CGG | 0.272508 | 2_3:+35539658 | Msa0289320:CDS |
CAGAAGGGCAATCTTGAATA+AGG | 0.272691 | 2_3:-35539331 | None:intergenic |
ACTTGAGTTGATCAAAATAT+TGG | 0.275160 | 2_3:+35542935 | Msa0289320:CDS |
ATTTCTACTTAATTGGGAAT+TGG | 0.276747 | 2_3:+35539367 | Msa0289320:CDS |
ATCAACTCAAGTCCGATCTT+TGG | 0.291108 | 2_3:-35542924 | None:intergenic |
TCTTGAAAGGGTGACATTAC+AGG | 0.292157 | 2_3:+35542863 | Msa0289320:CDS |
TTTCTGATGATGTTGTGATT+AGG | 0.294754 | 2_3:+35539525 | Msa0289320:CDS |
TTCCCAATTAAGTAGAAATT+GGG | 0.301013 | 2_3:-35539363 | None:intergenic |
TTGATCAAAATATTGGCATT+TGG | 0.301587 | 2_3:+35542942 | Msa0289320:CDS |
CAACACCATATTTCATCCTT+TGG | 0.306291 | 2_3:-35540033 | None:intergenic |
ACAATAGAGTTGAGGCCATT+AGG | 0.306678 | 2_3:+35540754 | Msa0289320:CDS |
AGGTCAGGGCGGAGGTTGTT+AGG | 0.309694 | 2_3:+35539750 | Msa0289320:CDS |
TTAATCCAAAGGATGAAATA+TGG | 0.315058 | 2_3:+35540028 | Msa0289320:CDS |
TTGAAAGGAAAAGGTGCAAT+TGG | 0.315697 | 2_3:+35540136 | Msa0289320:CDS |
TGTAGAACACCGCAATAAAT+TGG | 0.316256 | 2_3:-35539441 | None:intergenic |
GATTCATGAGTTGAGGAGTT+TGG | 0.321130 | 2_3:+35539712 | Msa0289320:CDS |
TGATCAAAATATTGGCATTT+GGG | 0.327176 | 2_3:+35542943 | Msa0289320:CDS |
TTTCTACTTAATTGGGAATT+GGG | 0.329864 | 2_3:+35539368 | Msa0289320:CDS |
TTTCCCACTGCAGTTGTAAT+GGG | 0.336217 | 2_3:+35539560 | Msa0289320:CDS |
CAATAGAGTTGAGGCCATTA+GGG | 0.340610 | 2_3:+35540755 | Msa0289320:CDS |
GAAGAACATGAAGGCTTTCA+TGG | 0.341403 | 2_3:+35540351 | Msa0289320:CDS |
AACATGCGAATTCACAGATT+TGG | 0.348169 | 2_3:-35540626 | None:intergenic |
AAGTGGTTCTTACAAGAATA+AGG | 0.352405 | 2_3:-35539082 | None:intergenic |
GGGTTGTTAGATTGTTTCCT+AGG | 0.353615 | 2_3:+35539651 | Msa0289320:CDS |
ACCCCAATTTCTACTTAATT+GGG | 0.360043 | 2_3:+35539361 | Msa0289320:CDS |
CATGAAGTTCCTTCATACTT+AGG | 0.364333 | 2_3:+35540064 | Msa0289320:CDS |
GTTGGAGCGGAAAACTTGTT+TGG | 0.369327 | 2_3:+35542362 | Msa0289320:CDS |
AAAATCTGTAAAACTCTTGA+AGG | 0.378482 | 2_3:+35542227 | Msa0289320:CDS |
GCAGCAGCTCATGGAATGTT+TGG | 0.383910 | 2_3:+35540730 | Msa0289320:CDS |
AGTTACAACATTCATTAGTT+GGG | 0.385822 | 2_3:+35540778 | Msa0289320:CDS |
ACAATCTGTCCGATGGGGTT+GGG | 0.396491 | 2_3:+35539029 | None:intergenic |
TGTTTGGAGTTTATAAAGAA+TGG | 0.398840 | 2_3:+35542378 | Msa0289320:CDS |
GGTGCAATTGGGTTTGAAGT+TGG | 0.399622 | 2_3:+35540148 | Msa0289320:CDS |
GAGTTACAACATTCATTAGT+TGG | 0.403178 | 2_3:+35540777 | Msa0289320:CDS |
TTCCTAAGGATGAAATTGAT+AGG | 0.405215 | 2_3:+35539630 | Msa0289320:CDS |
GGTCCGTAGGGATGCTTTGA+AGG | 0.410069 | 2_3:+35539940 | Msa0289320:CDS |
ATTGAGTATTTGAAAGGAAA+AGG | 0.423032 | 2_3:+35540127 | Msa0289320:CDS |
GTAAGCATCCAGCTGGACTT+TGG | 0.424175 | 2_3:+35540284 | Msa0289320:CDS |
TGAAAGGAAAAGGTGCAATT+GGG | 0.424464 | 2_3:+35540137 | Msa0289320:CDS |
ATTTCCCACTGCAGTTGTAA+TGG | 0.426062 | 2_3:+35539559 | Msa0289320:CDS |
GCTAATCTCTTCCAATCCTT+CGG | 0.426075 | 2_3:+35539179 | Msa0289320:CDS |
CATGTTCTTCACATCTTGAC+CGG | 0.428680 | 2_3:-35540338 | None:intergenic |
CACAATCTGTCCGATGGGGT+TGG | 0.429626 | 2_3:+35539028 | None:intergenic |
TGTTGCAGAGTTTGAAATGC+AGG | 0.431814 | 2_3:+35539825 | Msa0289320:CDS |
TGGGTTTGAAGTTGGATTGA+AGG | 0.437194 | 2_3:+35540156 | Msa0289320:CDS |
TGTGGAATTTGGGGTTCCTA+AGG | 0.437466 | 2_3:+35539616 | Msa0289320:CDS |
CCAGAATTTGTTCCAAAGAT+CGG | 0.439021 | 2_3:+35542912 | Msa0289320:CDS |
GTGGTCACGGTTTGGTCCGT+AGG | 0.440458 | 2_3:+35539927 | Msa0289320:CDS |
GAACCAAGGTTGATTGCTTA+CGG | 0.441891 | 2_3:+35539974 | Msa0289320:CDS |
TTCACATCTTGACCGGTTTG+AGG | 0.446780 | 2_3:-35540331 | None:intergenic |
CAGCCGAGAGGTCAGGGCGG+AGG | 0.450679 | 2_3:+35539742 | Msa0289320:CDS |
CAATTGTACAGAGATTTATT+GGG | 0.454992 | 2_3:+35542178 | Msa0289320:CDS |
CGGGATTTGGAATTGAGGAT+AGG | 0.460840 | 2_3:+35539678 | Msa0289320:CDS |
TGAATGTTGTAACTCCCTAA+TGG | 0.462308 | 2_3:-35540769 | None:intergenic |
GTTGTTATTAGTTGAAGAAG+TGG | 0.465877 | 2_3:-35539099 | None:intergenic |
GTTGATTGCTTACGGCTTGG+AGG | 0.471445 | 2_3:+35539982 | Msa0289320:CDS |
ATCTCCATTCCCAAAACCCT+TGG | 0.472530 | 2_3:-35539776 | None:intergenic |
GGTTAAGGTCTTGGCTCAGT+TGG | 0.473212 | 2_3:+35542344 | Msa0289320:intron |
CTCCGCCCTGACCTCTCGGC+TGG | 0.473380 | 2_3:-35539741 | None:intergenic |
TACTCAATGACATTGTATCT+AGG | 0.474566 | 2_3:-35540112 | None:intergenic |
GTTTGGAGTTTATAAAGAAT+GGG | 0.474872 | 2_3:+35542379 | Msa0289320:CDS |
ACCCTATCAATTTCATCCTT+AGG | 0.474968 | 2_3:-35539632 | None:intergenic |
AAGGTTGATTGCTTACGGCT+TGG | 0.480277 | 2_3:+35539979 | Msa0289320:CDS |
GGTCAGGGCGGAGGTTGTTA+GGG | 0.481020 | 2_3:+35539751 | Msa0289320:CDS |
GATCGGTATTGAAGAGGAAG+TGG | 0.483347 | 2_3:-35539241 | None:intergenic |
AGGAAGGGAAACCGAAGGAT+TGG | 0.491372 | 2_3:-35539190 | None:intergenic |
GGTAAGAGATTGACGAAGGT+GGG | 0.494203 | 2_3:-35539267 | None:intergenic |
TTGTTTGTGTGGTCACGGTT+TGG | 0.495793 | 2_3:+35539919 | Msa0289320:CDS |
GGTTGTTAGATTGTTTCCTA+GGG | 0.496449 | 2_3:+35539652 | Msa0289320:CDS |
AATGTCATTGAGTATTTGAA+AGG | 0.500561 | 2_3:+35540121 | Msa0289320:CDS |
TCAAGATTGCCCTTCTGTGT+TGG | 0.502454 | 2_3:+35539337 | Msa0289320:CDS |
CGGGGAAGGATTAGAAAGCT+TGG | 0.503315 | 2_3:-35539408 | None:intergenic |
TTGTAAAATCTAAGCCTAGT+TGG | 0.506128 | 2_3:-35540190 | None:intergenic |
AGATGTAGGTGGATTAGAAA+TGG | 0.507251 | 2_3:-35539132 | None:intergenic |
TGCTTTCAGAGTTCTTGAAA+GGG | 0.508227 | 2_3:+35542851 | Msa0289320:intron |
CGGAGGTTGTTAGGGATCCA+AGG | 0.508723 | 2_3:+35539759 | Msa0289320:CDS |
TGGTAAGAGATTGACGAAGG+TGG | 0.510918 | 2_3:-35539268 | None:intergenic |
ATGCTTTCAGAGTTCTTGAA+AGG | 0.511397 | 2_3:+35542850 | Msa0289320:intron |
CCACAGAAGTTTCCTCAAAC+CGG | 0.516850 | 2_3:+35540319 | Msa0289320:CDS |
AATCCGTGGCACAGGTCCAT+TGG | 0.518651 | 2_3:-35542889 | None:intergenic |
TTCATGAGTTGAGGAGTTTG+GGG | 0.519712 | 2_3:+35539714 | Msa0289320:CDS |
TGTAGGTGGATTAGAAATGG+TGG | 0.521617 | 2_3:-35539129 | None:intergenic |
ATAAATTGGCTATCATCAGC+GGG | 0.523449 | 2_3:-35539427 | None:intergenic |
TTTGAGGAAACTTCTGTGGT+TGG | 0.524496 | 2_3:-35540315 | None:intergenic |
AACAGCTTCCAAAGTCCAGC+TGG | 0.524566 | 2_3:-35540292 | None:intergenic |
CCATGAGCTGCTGCTTGTGG+TGG | 0.524848 | 2_3:-35540721 | None:intergenic |
AATTCTGGAATCCGTGGCAC+AGG | 0.526371 | 2_3:-35542897 | None:intergenic |
GGTTTCGGGATTTGGAATTG+AGG | 0.528445 | 2_3:+35539673 | Msa0289320:CDS |
AAATTCGGAAGAGAAGAGGA+AGG | 0.533269 | 2_3:-35539206 | None:intergenic |
GTTACAACATTCATTAGTTG+GGG | 0.534750 | 2_3:+35540779 | Msa0289320:CDS |
AGAAGGGCAATCTTGAATAA+GGG | 0.535156 | 2_3:-35539330 | None:intergenic |
TTGGCTATCATCAGCGGGGA+AGG | 0.535986 | 2_3:-35539422 | None:intergenic |
TTCCCCATTACAACTGCAGT+GGG | 0.537140 | 2_3:-35539563 | None:intergenic |
AATAAATTGGCTATCATCAG+CGG | 0.542731 | 2_3:-35539428 | None:intergenic |
TCCTAAGGATGAAATTGATA+GGG | 0.543797 | 2_3:+35539631 | Msa0289320:CDS |
GTTAAAAGTAAGCATCCAGC+TGG | 0.546625 | 2_3:+35540277 | Msa0289320:CDS |
TTGACGAAGGTGGGATGGAT+CGG | 0.551796 | 2_3:-35539258 | None:intergenic |
GTGGATTGTTTGTGTGGTCA+CGG | 0.552758 | 2_3:+35539914 | Msa0289320:CDS |
ATTCCAAATCCCGAAACCCT+AGG | 0.553487 | 2_3:-35539668 | None:intergenic |
TGTTGATACTCAACAGTGTA+TGG | 0.561591 | 2_3:+35540806 | Msa0289320:CDS |
GTTGCAGAGTTTGAAATGCA+GGG | 0.562878 | 2_3:+35539826 | Msa0289320:CDS |
AGAGATTGACGAAGGTGGGA+TGG | 0.563472 | 2_3:-35539263 | None:intergenic |
CAACCTCCGCCCTGACCTCT+CGG | 0.563699 | 2_3:-35539745 | None:intergenic |
CCACCACAAGCAGCAGCTCA+TGG | 0.566254 | 2_3:+35540721 | Msa0289320:CDS |
ATGGGGAAAAGTCAAATTGT+TGG | 0.568119 | 2_3:+35539578 | Msa0289320:CDS |
GAGGAAATTCGGAAGAGAAG+AGG | 0.568672 | 2_3:-35539210 | None:intergenic |
TTGAGAGTGGATTGTTTGTG+TGG | 0.573095 | 2_3:+35539908 | Msa0289320:CDS |
ATTCCATGAGCTGCTGCTTG+TGG | 0.573331 | 2_3:-35540724 | None:intergenic |
TCCCAATTAAGTAGAAATTG+GGG | 0.577215 | 2_3:-35539362 | None:intergenic |
AAATTCACACCTAAGTATGA+AGG | 0.579741 | 2_3:-35540073 | None:intergenic |
TGCTTTGAAGGTGTTGTGGA+AGG | 0.580553 | 2_3:+35539952 | Msa0289320:CDS |
AGCTGTTGATTCATGAGTTG+AGG | 0.589517 | 2_3:+35539705 | Msa0289320:CDS |
AATTGGGGTTCCAACACAGA+AGG | 0.590708 | 2_3:-35539347 | None:intergenic |
AATTCGGAAGAGAAGAGGAA+GGG | 0.592899 | 2_3:-35539205 | None:intergenic |
CCGGTTTGAGGAAACTTCTG+TGG | 0.592977 | 2_3:-35540319 | None:intergenic |
TGGTCACGGTTTGGTCCGTA+GGG | 0.595187 | 2_3:+35539928 | Msa0289320:CDS |
GGGATGGATCGGTATTGAAG+AGG | 0.598546 | 2_3:-35539247 | None:intergenic |
GGAGGTTGTTAGGGATCCAA+GGG | 0.599772 | 2_3:+35539760 | Msa0289320:CDS |
GGGTGGTAAGAGATTGACGA+AGG | 0.601379 | 2_3:-35539271 | None:intergenic |
AGGTCTTGGCTCAGTTGGAG+CGG | 0.602503 | 2_3:+35542349 | Msa0289320:intron |
TTTCCCCATTACAACTGCAG+TGG | 0.603282 | 2_3:-35539564 | None:intergenic |
ACTTTATGGGAAATATCAAG+TGG | 0.603369 | 2_3:-35539479 | None:intergenic |
CTTTATGGGAAATATCAAGT+GGG | 0.607807 | 2_3:-35539478 | None:intergenic |
GGGATGCTTTGAAGGTGTTG+TGG | 0.613256 | 2_3:+35539948 | Msa0289320:CDS |
TTCCCACTGCAGTTGTAATG+GGG | 0.614215 | 2_3:+35539561 | Msa0289320:CDS |
AAGCCAATGGACCTGTGCCA+CGG | 0.617584 | 2_3:+35542886 | Msa0289320:CDS |
AAGCCGTAAGCAATCAACCT+TGG | 0.618922 | 2_3:-35539977 | None:intergenic |
GGAACAAATTCTGGAATCCG+TGG | 0.622732 | 2_3:-35542903 | None:intergenic |
TGTTTGGAACAATAGAGTTG+AGG | 0.628296 | 2_3:+35540746 | Msa0289320:CDS |
ATTGGGGTTCCAACACAGAA+GGG | 0.628360 | 2_3:-35539346 | None:intergenic |
TGATGATAGCCAATTTATTG+CGG | 0.634282 | 2_3:+35539432 | Msa0289320:CDS |
ATGGTGGAACCCAACCCCAT+CGG | 0.637698 | 2_3:-35539038 | None:intergenic |
AGGACATCATCAAACCAACT+AGG | 0.642474 | 2_3:+35540176 | Msa0289320:CDS |
GTGACATTACAGGAAGCCAA+TGG | 0.643356 | 2_3:+35542873 | Msa0289320:CDS |
AGAAGAGGAAGGGAAACCGA+AGG | 0.647325 | 2_3:-35539195 | None:intergenic |
ACACCTTCAAAGCATCCCTA+CGG | 0.648597 | 2_3:-35539943 | None:intergenic |
TCAAGATGTGAAGAACATGA+AGG | 0.654568 | 2_3:+35540342 | Msa0289320:CDS |
TTTCTGTAATGAGATGTAGG+TGG | 0.659285 | 2_3:-35539143 | None:intergenic |
GCAGGGAGGCAATTAAAGAG+AGG | 0.662756 | 2_3:+35539843 | Msa0289320:CDS |
TTCCAGCCGAGAGGTCAGGG+CGG | 0.702811 | 2_3:+35539739 | Msa0289320:CDS |
AGGTGTTGTGGAAGGAACCA+AGG | 0.704640 | 2_3:+35539960 | Msa0289320:CDS |
GCAGAGTTTGAAATGCAGGG+AGG | 0.745889 | 2_3:+35539829 | Msa0289320:CDS |
TAAATTGGCTATCATCAGCG+GGG | 0.750324 | 2_3:-35539426 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTGATTTAAAATTAATTTT+GGG | - | chr2_3:35540588-35540607 | None:intergenic | 10.0% |
!!! | TTGTGATTTAAAATTAATTT+TGG | - | chr2_3:35540589-35540608 | None:intergenic | 10.0% |
!!! | AAATTAATTTTAAATCACAA+AGG | + | chr2_3:35540589-35540608 | Msa0289320:intron | 10.0% |
!!! | AATTAATTTTAAATCACAAA+GGG | + | chr2_3:35540590-35540609 | Msa0289320:intron | 10.0% |
!!! | AAAAATATTTTAACAGAAAA+AGG | - | chr2_3:35542281-35542300 | None:intergenic | 10.0% |
!! | AAGAATTATAAAAATGTTAG+TGG | + | chr2_3:35540687-35540706 | Msa0289320:CDS | 15.0% |
!!! | TTGAAACAGTTTAATTTTTA+GGG | - | chr2_3:35541222-35541241 | None:intergenic | 15.0% |
!! | TAAAAATTAAACTGTTTCAA+GGG | + | chr2_3:35541222-35541241 | Msa0289320:intron | 15.0% |
!! | TATAAAAAAATCTTAAAGTG+AGG | - | chr2_3:35541540-35541559 | None:intergenic | 15.0% |
!! | AACATATAATATGAACTTAA+GGG | - | chr2_3:35541685-35541704 | None:intergenic | 15.0% |
!!! | TTAATTTTCTTGTGGAATTT+GGG | + | chr2_3:35539606-35539625 | Msa0289320:CDS | 20.0% |
!! | CAGAATGTGAAAAAATATAT+GGG | + | chr2_3:35540233-35540252 | Msa0289320:CDS | 20.0% |
!!! | AAAAATATATGGGAGATTTT+CGG | + | chr2_3:35540243-35540262 | Msa0289320:CDS | 20.0% |
!! | AATACGTAAAAGACAAAATA+GGG | - | chr2_3:35540984-35541003 | None:intergenic | 20.0% |
!! | AAATACGTAAAAGACAAAAT+AGG | - | chr2_3:35540985-35541004 | None:intergenic | 20.0% |
!!! | CTTGAAACAGTTTAATTTTT+AGG | - | chr2_3:35541223-35541242 | None:intergenic | 20.0% |
!! | CTAAAAATTAAACTGTTTCA+AGG | + | chr2_3:35541221-35541240 | Msa0289320:intron | 20.0% |
!!! | TTATGCATTGTATTTTTGTA+TGG | + | chr2_3:35541570-35541589 | Msa0289320:intron | 20.0% |
!! | GAACATATAATATGAACTTA+AGG | - | chr2_3:35541686-35541705 | None:intergenic | 20.0% |
!!! | ATGTTTTTCTCGTAAAATTT+GGG | - | chr2_3:35541954-35541973 | None:intergenic | 20.0% |
!!! | AATGTTTTTCTCGTAAAATT+TGG | - | chr2_3:35541955-35541974 | None:intergenic | 20.0% |
!!! | ACTAATGTTTGATATGATTT+TGG | + | chr2_3:35542323-35542342 | Msa0289320:intron | 20.0% |
!!! | TTGATATAAATTTCAAGTCA+TGG | - | chr2_3:35542415-35542434 | None:intergenic | 20.0% |
!!! | ACATGTATCTAAAATTGTTA+GGG | + | chr2_3:35542776-35542795 | Msa0289320:intron | 20.0% |
! | AATCTTGAATAAGGGAAATT+AGG | - | chr2_3:35539325-35539344 | None:intergenic | 25.0% |
! | TTCCCAATTAAGTAGAAATT+GGG | - | chr2_3:35539366-35539385 | None:intergenic | 25.0% |
! | ATTCCCAATTAAGTAGAAAT+TGG | - | chr2_3:35539367-35539386 | None:intergenic | 25.0% |
! | ATTTCTACTTAATTGGGAAT+TGG | + | chr2_3:35539367-35539386 | Msa0289320:CDS | 25.0% |
! | TTTCTACTTAATTGGGAATT+GGG | + | chr2_3:35539368-35539387 | Msa0289320:CDS | 25.0% |
!! | AAATATCAAGTGGGTTTAAA+TGG | - | chr2_3:35539472-35539491 | None:intergenic | 25.0% |
! | CCTAAAAATCTCAACTTTAT+GGG | - | chr2_3:35539495-35539514 | None:intergenic | 25.0% |
!! | CCATAAAGTTGAGATTTTTA+GGG | + | chr2_3:35539493-35539512 | Msa0289320:CDS | 25.0% |
!!! | CATAAAGTTGAGATTTTTAG+GGG | + | chr2_3:35539494-35539513 | Msa0289320:CDS | 25.0% |
!! | GTTAATTTTCTTGTGGAATT+TGG | + | chr2_3:35539605-35539624 | Msa0289320:CDS | 25.0% |
!! | TAATTTTCTTGTGGAATTTG+GGG | + | chr2_3:35539607-35539626 | Msa0289320:CDS | 25.0% |
!! | AGATTGAGTTTTTAATCCAA+AGG | + | chr2_3:35540017-35540036 | Msa0289320:CDS | 25.0% |
! | TTAATCCAAAGGATGAAATA+TGG | + | chr2_3:35540028-35540047 | Msa0289320:CDS | 25.0% |
! | AATGTCATTGAGTATTTGAA+AGG | + | chr2_3:35540121-35540140 | Msa0289320:CDS | 25.0% |
! | ATTGAGTATTTGAAAGGAAA+AGG | + | chr2_3:35540127-35540146 | Msa0289320:CDS | 25.0% |
!!! | ATTTTTTCACATTCTGGATA+AGG | - | chr2_3:35540229-35540248 | None:intergenic | 25.0% |
!!! | CCATATATTTTTTCACATTC+TGG | - | chr2_3:35540235-35540254 | None:intergenic | 25.0% |
! | CCAGAATGTGAAAAAATATA+TGG | + | chr2_3:35540232-35540251 | Msa0289320:CDS | 25.0% |
!! | AAAATATATGGGAGATTTTC+GGG | + | chr2_3:35540244-35540263 | Msa0289320:CDS | 25.0% |
! | AGTTACAACATTCATTAGTT+GGG | + | chr2_3:35540778-35540797 | Msa0289320:CDS | 25.0% |
!!! | ACCACTATATTGTTTTAATG+TGG | + | chr2_3:35541189-35541208 | Msa0289320:intron | 25.0% |
! | TCCACATTAAAACAATATAG+TGG | - | chr2_3:35541193-35541212 | None:intergenic | 25.0% |
! | TACAGAGATAACTCATATTA+GGG | - | chr2_3:35541440-35541459 | None:intergenic | 25.0% |
! | TTACAGAGATAACTCATATT+AGG | - | chr2_3:35541441-35541460 | None:intergenic | 25.0% |
! | AAATTCTGAACAATGCATAT+AGG | - | chr2_3:35541652-35541671 | None:intergenic | 25.0% |
!! | ATGCATTGTTCAGAATTTTA+TGG | + | chr2_3:35541654-35541673 | Msa0289320:intron | 25.0% |
! | ACAATTGTACAGAGATTTAT+TGG | + | chr2_3:35542177-35542196 | Msa0289320:CDS | 25.0% |
! | CAATTGTACAGAGATTTATT+GGG | + | chr2_3:35542178-35542197 | Msa0289320:CDS | 25.0% |
!! | GAGTTTTACAGATTTTATTC+TGG | - | chr2_3:35542223-35542242 | None:intergenic | 25.0% |
! | AAAATCTGTAAAACTCTTGA+AGG | + | chr2_3:35542227-35542246 | Msa0289320:CDS | 25.0% |
!!! | GTTTGATATGATTTTGGTTA+AGG | + | chr2_3:35542329-35542348 | Msa0289320:intron | 25.0% |
!! | TGTTTGGAGTTTATAAAGAA+TGG | + | chr2_3:35542378-35542397 | Msa0289320:CDS | 25.0% |
!! | GTTTGGAGTTTATAAAGAAT+GGG | + | chr2_3:35542379-35542398 | Msa0289320:CDS | 25.0% |
! | GGAAGAAAAAAAAGTAAACT+CGG | + | chr2_3:35542469-35542488 | Msa0289320:intron | 25.0% |
! | GAAGAAAAAAAAGTAAACTC+GGG | + | chr2_3:35542470-35542489 | Msa0289320:intron | 25.0% |
!!! | TCGATAAGTTTTTCAAATGA+AGG | - | chr2_3:35542607-35542626 | None:intergenic | 25.0% |
!! | CTAACAATTTTAGATACATG+TGG | - | chr2_3:35542777-35542796 | None:intergenic | 25.0% |
!! | CACATGTATCTAAAATTGTT+AGG | + | chr2_3:35542775-35542794 | Msa0289320:intron | 25.0% |
!! | CATGTATCTAAAATTGTTAG+GGG | + | chr2_3:35542777-35542796 | Msa0289320:intron | 25.0% |
!! | ATGTATCTAAAATTGTTAGG+GGG | + | chr2_3:35542778-35542797 | Msa0289320:intron | 25.0% |
!!! | TATTGTAACTCTTTTTTCGT+TGG | + | chr2_3:35542807-35542826 | Msa0289320:intron | 25.0% |
!!! | ACTTGAGTTGATCAAAATAT+TGG | + | chr2_3:35542935-35542954 | Msa0289320:CDS | 25.0% |
! | TTGATCAAAATATTGGCATT+TGG | + | chr2_3:35542942-35542961 | Msa0289320:CDS | 25.0% |
! | TGATCAAAATATTGGCATTT+GGG | + | chr2_3:35542943-35542962 | Msa0289320:CDS | 25.0% |
!!! | GTTGTTTCTTTTTCTGACTA+TGG | - | chr2_3:35539060-35539079 | None:intergenic | 30.0% |
AAGTGGTTCTTACAAGAATA+AGG | - | chr2_3:35539085-35539104 | None:intergenic | 30.0% | |
! | GTTGTTATTAGTTGAAGAAG+TGG | - | chr2_3:35539102-35539121 | None:intergenic | 30.0% |
! | TGTTTTCTGTAATGAGATGT+AGG | - | chr2_3:35539149-35539168 | None:intergenic | 30.0% |
!! | TGGAATTTTGAAGGAAAAGA+GGG | - | chr2_3:35539294-35539313 | None:intergenic | 30.0% |
! | GTTTTTCTGTGGAATTTTGA+AGG | - | chr2_3:35539303-35539322 | None:intergenic | 30.0% |
AACCCCAATTTCTACTTAAT+TGG | + | chr2_3:35539360-35539379 | Msa0289320:CDS | 30.0% | |
ACCCCAATTTCTACTTAATT+GGG | + | chr2_3:35539361-35539380 | Msa0289320:CDS | 30.0% | |
TCCCAATTAAGTAGAAATTG+GGG | - | chr2_3:35539365-35539384 | None:intergenic | 30.0% | |
! | GAAAGCTTGGATATGAATTT+TGG | - | chr2_3:35539398-35539417 | None:intergenic | 30.0% |
AATAAATTGGCTATCATCAG+CGG | - | chr2_3:35539431-35539450 | None:intergenic | 30.0% | |
TGATGATAGCCAATTTATTG+CGG | + | chr2_3:35539432-35539451 | Msa0289320:CDS | 30.0% | |
CTTTATGGGAAATATCAAGT+GGG | - | chr2_3:35539481-35539500 | None:intergenic | 30.0% | |
ACTTTATGGGAAATATCAAG+TGG | - | chr2_3:35539482-35539501 | None:intergenic | 30.0% | |
! | CCCATAAAGTTGAGATTTTT+AGG | + | chr2_3:35539492-35539511 | Msa0289320:CDS | 30.0% |
CCCTAAAAATCTCAACTTTA+TGG | - | chr2_3:35539496-35539515 | None:intergenic | 30.0% | |
! | TTTCTGATGATGTTGTGATT+AGG | + | chr2_3:35539525-35539544 | Msa0289320:CDS | 30.0% |
! | TTCTGATGATGTTGTGATTA+GGG | + | chr2_3:35539526-35539545 | Msa0289320:CDS | 30.0% |
TTCCTAAGGATGAAATTGAT+AGG | + | chr2_3:35539630-35539649 | Msa0289320:CDS | 30.0% | |
TCCTAAGGATGAAATTGATA+GGG | + | chr2_3:35539631-35539650 | Msa0289320:CDS | 30.0% | |
! | GCAATTAAAGAGAGGATTTT+TGG | + | chr2_3:35539851-35539870 | Msa0289320:CDS | 30.0% |
AAATTCACACCTAAGTATGA+AGG | - | chr2_3:35540076-35540095 | None:intergenic | 30.0% | |
TACTCAATGACATTGTATCT+AGG | - | chr2_3:35540115-35540134 | None:intergenic | 30.0% | |
TTGTAAAATCTAAGCCTAGT+TGG | - | chr2_3:35540193-35540212 | None:intergenic | 30.0% | |
GATCTATGAATACTGTTAGT+TGG | + | chr2_3:35540394-35540413 | Msa0289320:intron | 30.0% | |
AATACTGTTAGTTGGATGAA+TGG | + | chr2_3:35540402-35540421 | Msa0289320:intron | 30.0% | |
!!! | TGCATAAACTTGTTTTGCAT+AGG | - | chr2_3:35540476-35540495 | None:intergenic | 30.0% |
GAGTTACAACATTCATTAGT+TGG | + | chr2_3:35540777-35540796 | Msa0289320:CDS | 30.0% | |
GTTACAACATTCATTAGTTG+GGG | + | chr2_3:35540779-35540798 | Msa0289320:CDS | 30.0% | |
GCAAATGAATGAATTTGGAA+TGG | - | chr2_3:35541293-35541312 | None:intergenic | 30.0% | |
ACTCATATTAGGGAAAAGAA+AGG | - | chr2_3:35541430-35541449 | None:intergenic | 30.0% | |
!! | TCTGCTATTTGATCATGTTT+TGG | - | chr2_3:35541833-35541852 | None:intergenic | 30.0% |
TATTCTCTAATGATTGCAGA+TGG | + | chr2_3:35542058-35542077 | Msa0289320:intron | 30.0% | |
!!! | TATGATTTTGGTTAAGGTCT+TGG | + | chr2_3:35542335-35542354 | Msa0289320:intron | 30.0% |
CTAAACCTCTGCAATTAATT+TGG | - | chr2_3:35542694-35542713 | None:intergenic | 30.0% | |
! | GTTTCTTTTTCTGACTATGG+TGG | - | chr2_3:35539057-35539076 | None:intergenic | 35.0% |
!! | AGATGTAGGTGGATTAGAAA+TGG | - | chr2_3:35539135-35539154 | None:intergenic | 35.0% |
TTTCTGTAATGAGATGTAGG+TGG | - | chr2_3:35539146-35539165 | None:intergenic | 35.0% | |
!! | TGGTTTTTGGAGAGGAAATT+CGG | - | chr2_3:35539224-35539243 | None:intergenic | 35.0% |
! | ATTGAAGAGGAAGTGGTTTT+TGG | - | chr2_3:35539237-35539256 | None:intergenic | 35.0% |
!! | AATTTTGAAGGAAAAGAGGG+TGG | - | chr2_3:35539291-35539310 | None:intergenic | 35.0% |
!! | GTGGAATTTTGAAGGAAAAG+AGG | - | chr2_3:35539295-35539314 | None:intergenic | 35.0% |
! | AGGGAAATTAGGTTTTTCTG+TGG | - | chr2_3:35539314-35539333 | None:intergenic | 35.0% |
AGAAGGGCAATCTTGAATAA+GGG | - | chr2_3:35539333-35539352 | None:intergenic | 35.0% | |
ATAAATTGGCTATCATCAGC+GGG | - | chr2_3:35539430-35539449 | None:intergenic | 35.0% | |
TGTAGAACACCGCAATAAAT+TGG | - | chr2_3:35539444-35539463 | None:intergenic | 35.0% | |
!! | TTGAGATTTTTAGGGGTTCA+GGG | + | chr2_3:35539501-35539520 | Msa0289320:CDS | 35.0% |
! | TGATGTTGTGATTAGGGTTT+TGG | + | chr2_3:35539532-35539551 | Msa0289320:CDS | 35.0% |
ATGGGGAAAAGTCAAATTGT+TGG | + | chr2_3:35539578-35539597 | Msa0289320:CDS | 35.0% | |
!!! | TGGTGTCGTTAATTTTCTTG+TGG | + | chr2_3:35539598-35539617 | Msa0289320:CDS | 35.0% |
ACCCTATCAATTTCATCCTT+AGG | - | chr2_3:35539635-35539654 | None:intergenic | 35.0% | |
GGTTGTTAGATTGTTTCCTA+GGG | + | chr2_3:35539652-35539671 | Msa0289320:CDS | 35.0% | |
TAGATTGTTTCCTAGGGTTT+CGG | + | chr2_3:35539658-35539677 | Msa0289320:CDS | 35.0% | |
! | ATTCATGAGTTGAGGAGTTT+GGG | + | chr2_3:35539713-35539732 | Msa0289320:CDS | 35.0% |
!! | TAAAGAGAGGATTTTTGGAG+AGG | + | chr2_3:35539856-35539875 | Msa0289320:CDS | 35.0% |
!! | AAAGAGAGGATTTTTGGAGA+GGG | + | chr2_3:35539857-35539876 | Msa0289320:CDS | 35.0% |
!!! | TTTTGAAGTGAAGTTGAGAG+TGG | + | chr2_3:35539895-35539914 | Msa0289320:CDS | 35.0% |
CAACACCATATTTCATCCTT+TGG | - | chr2_3:35540036-35540055 | None:intergenic | 35.0% | |
CATGAAGTTCCTTCATACTT+AGG | + | chr2_3:35540064-35540083 | Msa0289320:CDS | 35.0% | |
! | TTGAAAGGAAAAGGTGCAAT+TGG | + | chr2_3:35540136-35540155 | Msa0289320:CDS | 35.0% |
! | TGAAAGGAAAAGGTGCAATT+GGG | + | chr2_3:35540137-35540156 | Msa0289320:CDS | 35.0% |
TCAAGATGTGAAGAACATGA+AGG | + | chr2_3:35540342-35540361 | Msa0289320:CDS | 35.0% | |
!! | ACTCAAAGTACTGCAGAAAA+AGG | + | chr2_3:35540541-35540560 | Msa0289320:intron | 35.0% |
!! | CTCAAAGTACTGCAGAAAAA+GGG | + | chr2_3:35540542-35540561 | Msa0289320:intron | 35.0% |
!! | TCAAAGTACTGCAGAAAAAG+GGG | + | chr2_3:35540543-35540562 | Msa0289320:intron | 35.0% |
AACATGCGAATTCACAGATT+TGG | - | chr2_3:35540629-35540648 | None:intergenic | 35.0% | |
! | TGTTTGGAACAATAGAGTTG+AGG | + | chr2_3:35540746-35540765 | Msa0289320:CDS | 35.0% |
TGAATGTTGTAACTCCCTAA+TGG | - | chr2_3:35540772-35540791 | None:intergenic | 35.0% | |
TGTTGATACTCAACAGTGTA+TGG | + | chr2_3:35540806-35540825 | Msa0289320:CDS | 35.0% | |
ATCCACAATTGCATCACAAT+CGG | + | chr2_3:35540916-35540935 | Msa0289320:intron | 35.0% | |
AAACTGTTTCAAGGGCAATT+TGG | + | chr2_3:35541230-35541249 | Msa0289320:intron | 35.0% | |
AACTGTTTCAAGGGCAATTT+GGG | + | chr2_3:35541231-35541250 | Msa0289320:intron | 35.0% | |
ATTGAAAGAACATGACTGCA+TGG | - | chr2_3:35541393-35541412 | None:intergenic | 35.0% | |
! | CTATACTGATTGTCATAGCA+AGG | + | chr2_3:35542114-35542133 | Msa0289320:intron | 35.0% |
ATATCAACTTCCTTTGTCCA+TGG | + | chr2_3:35542428-35542447 | Msa0289320:intron | 35.0% | |
CTATTGAACAATTGCGATTC+TGG | + | chr2_3:35542503-35542522 | Msa0289320:intron | 35.0% | |
! | TATTCCATGCCTTCTCTTTT+TGG | + | chr2_3:35542572-35542591 | Msa0289320:intron | 35.0% |
AAGATCCAACCAAAAAGAGA+AGG | - | chr2_3:35542584-35542603 | None:intergenic | 35.0% | |
ATGAATCTACTTGCATCTCT+AGG | + | chr2_3:35542641-35542660 | Msa0289320:intron | 35.0% | |
TGAATCTACTTGCATCTCTA+GGG | + | chr2_3:35542642-35542661 | Msa0289320:intron | 35.0% | |
GACTTCCAAATTAATTGCAG+AGG | + | chr2_3:35542686-35542705 | Msa0289320:intron | 35.0% | |
TAATTGCAGAGGTTTAGTCT+TGG | + | chr2_3:35542697-35542716 | Msa0289320:intron | 35.0% | |
!! | GTTTAGTCTTGGAGTTATGT+TGG | + | chr2_3:35542708-35542727 | Msa0289320:intron | 35.0% |
ATGCTTTCAGAGTTCTTGAA+AGG | + | chr2_3:35542850-35542869 | Msa0289320:intron | 35.0% | |
TGCTTTCAGAGTTCTTGAAA+GGG | + | chr2_3:35542851-35542870 | Msa0289320:intron | 35.0% | |
! | CCAGAATTTGTTCCAAAGAT+CGG | + | chr2_3:35542912-35542931 | Msa0289320:CDS | 35.0% |
!! | TGTAGGTGGATTAGAAATGG+TGG | - | chr2_3:35539132-35539151 | None:intergenic | 40.0% |
GCTAATCTCTTCCAATCCTT+CGG | + | chr2_3:35539179-35539198 | Msa0289320:CDS | 40.0% | |
AATTCGGAAGAGAAGAGGAA+GGG | - | chr2_3:35539208-35539227 | None:intergenic | 40.0% | |
AAATTCGGAAGAGAAGAGGA+AGG | - | chr2_3:35539209-35539228 | None:intergenic | 40.0% | |
CAGAAGGGCAATCTTGAATA+AGG | - | chr2_3:35539334-35539353 | None:intergenic | 40.0% | |
TAAATTGGCTATCATCAGCG+GGG | - | chr2_3:35539429-35539448 | None:intergenic | 40.0% | |
!! | GTTGAGATTTTTAGGGGTTC+AGG | + | chr2_3:35539500-35539519 | Msa0289320:CDS | 40.0% |
!! | TGTTGTGATTAGGGTTTTGG+AGG | + | chr2_3:35539535-35539554 | Msa0289320:CDS | 40.0% |
ATTTCCCACTGCAGTTGTAA+TGG | + | chr2_3:35539559-35539578 | Msa0289320:CDS | 40.0% | |
TTTCCCACTGCAGTTGTAAT+GGG | + | chr2_3:35539560-35539579 | Msa0289320:CDS | 40.0% | |
GGGTTGTTAGATTGTTTCCT+AGG | + | chr2_3:35539651-35539670 | Msa0289320:CDS | 40.0% | |
AGATTGTTTCCTAGGGTTTC+GGG | + | chr2_3:35539659-35539678 | Msa0289320:CDS | 40.0% | |
!! | AGCTGTTGATTCATGAGTTG+AGG | + | chr2_3:35539705-35539724 | Msa0289320:CDS | 40.0% |
! | GATTCATGAGTTGAGGAGTT+TGG | + | chr2_3:35539712-35539731 | Msa0289320:CDS | 40.0% |
! | TTCATGAGTTGAGGAGTTTG+GGG | + | chr2_3:35539714-35539733 | Msa0289320:CDS | 40.0% |
! | TGGAGATTGGGGAATTTTCA+CGG | + | chr2_3:35539792-35539811 | Msa0289320:CDS | 40.0% |
! | TGTTGCAGAGTTTGAAATGC+AGG | + | chr2_3:35539825-35539844 | Msa0289320:CDS | 40.0% |
! | GTTGCAGAGTTTGAAATGCA+GGG | + | chr2_3:35539826-35539845 | Msa0289320:CDS | 40.0% |
!! | TTTTTGGAGAGGGTTTGGTT+AGG | + | chr2_3:35539867-35539886 | Msa0289320:CDS | 40.0% |
!! | TTTTGGAGAGGGTTTGGTTA+GGG | + | chr2_3:35539868-35539887 | Msa0289320:CDS | 40.0% |
!! | TTGAGAGTGGATTGTTTGTG+TGG | + | chr2_3:35539908-35539927 | Msa0289320:CDS | 40.0% |
! | GAACCAAGGTTGATTGCTTA+CGG | + | chr2_3:35539974-35539993 | Msa0289320:CDS | 40.0% |
! | TGGGTTTGAAGTTGGATTGA+AGG | + | chr2_3:35540156-35540175 | Msa0289320:CDS | 40.0% |
AGGACATCATCAAACCAACT+AGG | + | chr2_3:35540176-35540195 | Msa0289320:CDS | 40.0% | |
!!! | ATATGGGAGATTTTCGGGTA+AGG | + | chr2_3:35540249-35540268 | Msa0289320:CDS | 40.0% |
GTTAAAAGTAAGCATCCAGC+TGG | + | chr2_3:35540277-35540296 | Msa0289320:CDS | 40.0% | |
TTTGAGGAAACTTCTGTGGT+TGG | - | chr2_3:35540318-35540337 | None:intergenic | 40.0% | |
CATGTTCTTCACATCTTGAC+CGG | - | chr2_3:35540341-35540360 | None:intergenic | 40.0% | |
GAAGAACATGAAGGCTTTCA+TGG | + | chr2_3:35540351-35540370 | Msa0289320:CDS | 40.0% | |
TCATGGATTCAATGCTGTAG+TGG | + | chr2_3:35540368-35540387 | Msa0289320:intron | 40.0% | |
CGTGTTCAAGCTCAAAATCA+TGG | - | chr2_3:35540429-35540448 | None:intergenic | 40.0% | |
TGCAGTACTTTGAGTAATGC+AGG | - | chr2_3:35540536-35540555 | None:intergenic | 40.0% | |
ACAATAGAGTTGAGGCCATT+AGG | + | chr2_3:35540754-35540773 | Msa0289320:CDS | 40.0% | |
CAATAGAGTTGAGGCCATTA+GGG | + | chr2_3:35540755-35540774 | Msa0289320:CDS | 40.0% | |
! | TACCGATTGTGATGCAATTG+TGG | - | chr2_3:35540921-35540940 | None:intergenic | 40.0% |
TTGCATCACAATCGGTATTC+TGG | + | chr2_3:35540924-35540943 | Msa0289320:intron | 40.0% | |
CGCTATTATCCTCATTGTAG+CGG | - | chr2_3:35541095-35541114 | None:intergenic | 40.0% | |
CGCTACAATGAGGATAATAG+CGG | + | chr2_3:35541093-35541112 | Msa0289320:intron | 40.0% | |
ACGGCGCAAATGAATGAATT+TGG | - | chr2_3:35541298-35541317 | None:intergenic | 40.0% | |
TTAGGGCTCACAAACTTGAA+CGG | - | chr2_3:35541317-35541336 | None:intergenic | 40.0% | |
! | GAGGAAGAAGAAAAGCATGA+TGG | - | chr2_3:35541521-35541540 | None:intergenic | 40.0% |
TAGGATTGACCACCTAGATT+TGG | + | chr2_3:35541881-35541900 | Msa0289320:intron | 40.0% | |
AGGATTGACCACCTAGATTT+GGG | + | chr2_3:35541882-35541901 | Msa0289320:intron | 40.0% | |
AACCCCAAAAGCTATCTCAA+GGG | + | chr2_3:35541918-35541937 | Msa0289320:intron | 40.0% | |
TAACTTTAGCCAGTTGTCCA+TGG | - | chr2_3:35542448-35542467 | None:intergenic | 40.0% | |
ATGGACAACTGGCTAAAGTT+AGG | + | chr2_3:35542447-35542466 | Msa0289320:intron | 40.0% | |
TGGACAACTGGCTAAAGTTA+GGG | + | chr2_3:35542448-35542467 | Msa0289320:intron | 40.0% | |
TTGAACAATTGCGATTCTGG+AGG | + | chr2_3:35542506-35542525 | Msa0289320:intron | 40.0% | |
TGAACAATTGCGATTCTGGA+GGG | + | chr2_3:35542507-35542526 | Msa0289320:intron | 40.0% | |
! | AGAGAAGGCATGGAATATCT+CGG | - | chr2_3:35542569-35542588 | None:intergenic | 40.0% |
! | CGATGGTTGACTTAAGAAAG+TGG | + | chr2_3:35542733-35542752 | Msa0289320:intron | 40.0% |
!! | AAGTGGATTGCAACAAGAAG+TGG | + | chr2_3:35542750-35542769 | Msa0289320:intron | 40.0% |
TCTTGAAAGGGTGACATTAC+AGG | + | chr2_3:35542863-35542882 | Msa0289320:CDS | 40.0% | |
!! | CCGATCTTTGGAACAAATTC+TGG | - | chr2_3:35542915-35542934 | None:intergenic | 40.0% |
ATCAACTCAAGTCCGATCTT+TGG | - | chr2_3:35542927-35542946 | None:intergenic | 40.0% | |
! | TATTGGCATTTGGGCTTTTC+AGG | + | chr2_3:35542952-35542971 | Msa0289320:CDS | 40.0% |
! | ATTGGCATTTGGGCTTTTCA+GGG | + | chr2_3:35542953-35542972 | Msa0289320:CDS | 40.0% |
GAGGAAATTCGGAAGAGAAG+AGG | - | chr2_3:35539213-35539232 | None:intergenic | 45.0% | |
!! | AGAGGAAGTGGTTTTTGGAG+AGG | - | chr2_3:35539232-35539251 | None:intergenic | 45.0% |
! | GATCGGTATTGAAGAGGAAG+TGG | - | chr2_3:35539244-35539263 | None:intergenic | 45.0% |
GGTAAGAGATTGACGAAGGT+GGG | - | chr2_3:35539270-35539289 | None:intergenic | 45.0% | |
TGGTAAGAGATTGACGAAGG+TGG | - | chr2_3:35539271-35539290 | None:intergenic | 45.0% | |
TCAAGATTGCCCTTCTGTGT+TGG | + | chr2_3:35539337-35539356 | Msa0289320:CDS | 45.0% | |
ATTGGGGTTCCAACACAGAA+GGG | - | chr2_3:35539349-35539368 | None:intergenic | 45.0% | |
AATTGGGGTTCCAACACAGA+AGG | - | chr2_3:35539350-35539369 | None:intergenic | 45.0% | |
TTCCCACTGCAGTTGTAATG+GGG | + | chr2_3:35539561-35539580 | Msa0289320:CDS | 45.0% | |
TTCCCCATTACAACTGCAGT+GGG | - | chr2_3:35539566-35539585 | None:intergenic | 45.0% | |
TTTCCCCATTACAACTGCAG+TGG | - | chr2_3:35539567-35539586 | None:intergenic | 45.0% | |
! | TGTGGAATTTGGGGTTCCTA+AGG | + | chr2_3:35539616-35539635 | Msa0289320:CDS | 45.0% |
TTTCCTAGGGTTTCGGGATT+TGG | + | chr2_3:35539665-35539684 | Msa0289320:CDS | 45.0% | |
ATTCCAAATCCCGAAACCCT+AGG | - | chr2_3:35539671-35539690 | None:intergenic | 45.0% | |
! | GGTTTCGGGATTTGGAATTG+AGG | + | chr2_3:35539673-35539692 | Msa0289320:CDS | 45.0% |
! | CGGGATTTGGAATTGAGGAT+AGG | + | chr2_3:35539678-35539697 | Msa0289320:CDS | 45.0% |
! | TGTTAGGGATCCAAGGGTTT+TGG | + | chr2_3:35539766-35539785 | Msa0289320:CDS | 45.0% |
! | GTTAGGGATCCAAGGGTTTT+GGG | + | chr2_3:35539767-35539786 | Msa0289320:CDS | 45.0% |
ATCTCCATTCCCAAAACCCT+TGG | - | chr2_3:35539779-35539798 | None:intergenic | 45.0% | |
!!! | AGGGTTTTGGGAATGGAGAT+TGG | + | chr2_3:35539779-35539798 | Msa0289320:CDS | 45.0% |
!!! | GGGTTTTGGGAATGGAGATT+GGG | + | chr2_3:35539780-35539799 | Msa0289320:CDS | 45.0% |
!!! | GGTTTTGGGAATGGAGATTG+GGG | + | chr2_3:35539781-35539800 | Msa0289320:CDS | 45.0% |
!! | GAGGATTTTTGGAGAGGGTT+TGG | + | chr2_3:35539862-35539881 | Msa0289320:CDS | 45.0% |
! | GTGGATTGTTTGTGTGGTCA+CGG | + | chr2_3:35539914-35539933 | Msa0289320:CDS | 45.0% |
TTGTTTGTGTGGTCACGGTT+TGG | + | chr2_3:35539919-35539938 | Msa0289320:CDS | 45.0% | |
! | ACACCTTCAAAGCATCCCTA+CGG | - | chr2_3:35539946-35539965 | None:intergenic | 45.0% |
!! | TGCTTTGAAGGTGTTGTGGA+AGG | + | chr2_3:35539952-35539971 | Msa0289320:CDS | 45.0% |
AAGCCGTAAGCAATCAACCT+TGG | - | chr2_3:35539980-35539999 | None:intergenic | 45.0% | |
! | AAGGTTGATTGCTTACGGCT+TGG | + | chr2_3:35539979-35539998 | Msa0289320:CDS | 45.0% |
! | GGTGCAATTGGGTTTGAAGT+TGG | + | chr2_3:35540148-35540167 | Msa0289320:CDS | 45.0% |
CCACAGAAGTTTCCTCAAAC+CGG | + | chr2_3:35540319-35540338 | Msa0289320:CDS | 45.0% | |
!! | TTCACATCTTGACCGGTTTG+AGG | - | chr2_3:35540334-35540353 | None:intergenic | 45.0% |
AGTACTGCAGAAAAAGGGGA+AGG | + | chr2_3:35540547-35540566 | Msa0289320:intron | 45.0% | |
GTGATGCAATTGTGGATGCA+AGG | - | chr2_3:35540913-35540932 | None:intergenic | 45.0% | |
CAGAGCGATGAAAACGGTTA+GGG | - | chr2_3:35541334-35541353 | None:intergenic | 45.0% | |
ACAGAGCGATGAAAACGGTT+AGG | - | chr2_3:35541335-35541354 | None:intergenic | 45.0% | |
ACGGAACAGAGCGATGAAAA+CGG | - | chr2_3:35541340-35541359 | None:intergenic | 45.0% | |
CGATGGGTGCAAAACTTGAA+CGG | - | chr2_3:35541359-35541378 | None:intergenic | 45.0% | |
GAAAGAACATGACTGCATGG+TGG | - | chr2_3:35541390-35541409 | None:intergenic | 45.0% | |
! | ATAGCGGGGATAGCTTATAG+CGG | - | chr2_3:35541860-35541879 | None:intergenic | 45.0% |
ATAAGCTATCCCCGCTATCT+AGG | + | chr2_3:35541862-35541881 | Msa0289320:intron | 45.0% | |
AGGTGGTCAATCCTAGATAG+CGG | - | chr2_3:35541876-35541895 | None:intergenic | 45.0% | |
AAACCTAGCCCAAATCTAGG+TGG | - | chr2_3:35541893-35541912 | None:intergenic | 45.0% | |
CTCAAACCTAGCCCAAATCT+AGG | - | chr2_3:35541896-35541915 | None:intergenic | 45.0% | |
CAACCCCAAAAGCTATCTCA+AGG | + | chr2_3:35541917-35541936 | Msa0289320:intron | 45.0% | |
ACCCCAAAAGCTATCTCAAG+GGG | + | chr2_3:35541919-35541938 | Msa0289320:intron | 45.0% | |
! | GTTGGAGCGGAAAACTTGTT+TGG | + | chr2_3:35542362-35542381 | Msa0289320:CDS | 45.0% |
TTCCTTTGTCCATGGACAAC+TGG | + | chr2_3:35542436-35542455 | Msa0289320:intron | 45.0% | |
TGGAGGGTTTGCATTCGATA+TGG | + | chr2_3:35542523-35542542 | Msa0289320:intron | 45.0% | |
CCAACCAAAAAGAGAAGGCA+TGG | - | chr2_3:35542579-35542598 | None:intergenic | 45.0% | |
!! | CCATGCCTTCTCTTTTTGGT+TGG | + | chr2_3:35542576-35542595 | Msa0289320:intron | 45.0% |
! | ATCTACTTGCATCTCTAGGG+AGG | + | chr2_3:35542645-35542664 | Msa0289320:intron | 45.0% |
! | TAGGGAGGCATATCTTGTTC+TGG | + | chr2_3:35542660-35542679 | Msa0289320:intron | 45.0% |
TTGGAGTTATGTTGGTGCGA+TGG | + | chr2_3:35542716-35542735 | Msa0289320:intron | 45.0% | |
GTGACATTACAGGAAGCCAA+TGG | + | chr2_3:35542873-35542892 | Msa0289320:CDS | 45.0% | |
!! | GGAACAAATTCTGGAATCCG+TGG | - | chr2_3:35542906-35542925 | None:intergenic | 45.0% |
!! | ATGTTTATAAATAATAATAT+AGG | + | chr2_3:35540953-35540972 | Msa0289320:intron | 5.0% |
AGGAAGGGAAACCGAAGGAT+TGG | - | chr2_3:35539193-35539212 | None:intergenic | 50.0% | |
AGAAGAGGAAGGGAAACCGA+AGG | - | chr2_3:35539198-35539217 | None:intergenic | 50.0% | |
! | GGGATGGATCGGTATTGAAG+AGG | - | chr2_3:35539250-35539269 | None:intergenic | 50.0% |
TTGACGAAGGTGGGATGGAT+CGG | - | chr2_3:35539261-35539280 | None:intergenic | 50.0% | |
AGAGATTGACGAAGGTGGGA+TGG | - | chr2_3:35539266-35539285 | None:intergenic | 50.0% | |
GGGTGGTAAGAGATTGACGA+AGG | - | chr2_3:35539274-35539293 | None:intergenic | 50.0% | |
CGGGGAAGGATTAGAAAGCT+TGG | - | chr2_3:35539411-35539430 | None:intergenic | 50.0% | |
GGAGGTTGTTAGGGATCCAA+GGG | + | chr2_3:35539760-35539779 | Msa0289320:CDS | 50.0% | |
!!! | GGATCCAAGGGTTTTGGGAA+TGG | + | chr2_3:35539772-35539791 | Msa0289320:CDS | 50.0% |
! | GCAGAGTTTGAAATGCAGGG+AGG | + | chr2_3:35539829-35539848 | Msa0289320:CDS | 50.0% |
GCAGGGAGGCAATTAAAGAG+AGG | + | chr2_3:35539843-35539862 | Msa0289320:CDS | 50.0% | |
!! | GGGATGCTTTGAAGGTGTTG+TGG | + | chr2_3:35539948-35539967 | Msa0289320:CDS | 50.0% |
! | AGGTGTTGTGGAAGGAACCA+AGG | + | chr2_3:35539960-35539979 | Msa0289320:CDS | 50.0% |
! | GTTGATTGCTTACGGCTTGG+AGG | + | chr2_3:35539982-35540001 | Msa0289320:CDS | 50.0% |
GTAAGCATCCAGCTGGACTT+TGG | + | chr2_3:35540284-35540303 | Msa0289320:CDS | 50.0% | |
AACAGCTTCCAAAGTCCAGC+TGG | - | chr2_3:35540295-35540314 | None:intergenic | 50.0% | |
! | CCGGTTTGAGGAAACTTCTG+TGG | - | chr2_3:35540322-35540341 | None:intergenic | 50.0% |
! | ATTCCATGAGCTGCTGCTTG+TGG | - | chr2_3:35540727-35540746 | None:intergenic | 50.0% |
GCAGCAGCTCATGGAATGTT+TGG | + | chr2_3:35540730-35540749 | Msa0289320:CDS | 50.0% | |
! | TCTCGCGCTATTGACTACGT+AGG | - | chr2_3:35541035-35541054 | None:intergenic | 50.0% |
AGCGGAGCAGTTAACGATAG+TGG | + | chr2_3:35541111-35541130 | Msa0289320:intron | 50.0% | |
ATGACTGCATGGTGGCTGTA+TGG | - | chr2_3:35541382-35541401 | None:intergenic | 50.0% | |
TAGCGGGGATAGCTTATAGC+GGG | - | chr2_3:35541859-35541878 | None:intergenic | 50.0% | |
GTGGTCAATCCTAGATAGCG+GGG | - | chr2_3:35541874-35541893 | None:intergenic | 50.0% | |
GGTGGTCAATCCTAGATAGC+GGG | - | chr2_3:35541875-35541894 | None:intergenic | 50.0% | |
TGACCACCTAGATTTGGGCT+AGG | + | chr2_3:35541887-35541906 | Msa0289320:intron | 50.0% | |
! | CCCCCTTGAGATAGCTTTTG+GGG | - | chr2_3:35541923-35541942 | None:intergenic | 50.0% |
CCCCAAAAGCTATCTCAAGG+GGG | + | chr2_3:35541920-35541939 | Msa0289320:intron | 50.0% | |
! | CCCCCCTTGAGATAGCTTTT+GGG | - | chr2_3:35541924-35541943 | None:intergenic | 50.0% |
CCCAAAAGCTATCTCAAGGG+GGG | + | chr2_3:35541921-35541940 | Msa0289320:intron | 50.0% | |
! | TCCCCCCTTGAGATAGCTTT+TGG | - | chr2_3:35541925-35541944 | None:intergenic | 50.0% |
AAAAGCTATCTCAAGGGGGG+AGG | + | chr2_3:35541924-35541943 | Msa0289320:intron | 50.0% | |
GACTCTTCCAAAGCTGCTGT+GGG | - | chr2_3:35542086-35542105 | None:intergenic | 50.0% | |
AGACTCTTCCAAAGCTGCTG+TGG | - | chr2_3:35542087-35542106 | None:intergenic | 50.0% | |
GGTTAAGGTCTTGGCTCAGT+TGG | + | chr2_3:35542344-35542363 | Msa0289320:intron | 50.0% | |
AGCCAGTTGTCCATGGACAA+AGG | - | chr2_3:35542441-35542460 | None:intergenic | 50.0% | |
!! | AATTCTGGAATCCGTGGCAC+AGG | - | chr2_3:35542900-35542919 | None:intergenic | 50.0% |
TTGGCTATCATCAGCGGGGA+AGG | - | chr2_3:35539425-35539444 | None:intergenic | 55.0% | |
!! | TTTGGGGTTTTCCAGCCGAG+AGG | + | chr2_3:35539730-35539749 | Msa0289320:CDS | 55.0% |
! | GTTTTCCAGCCGAGAGGTCA+GGG | + | chr2_3:35539736-35539755 | Msa0289320:CDS | 55.0% |
CGGAGGTTGTTAGGGATCCA+AGG | + | chr2_3:35539759-35539778 | Msa0289320:CDS | 55.0% | |
!! | TGGTCACGGTTTGGTCCGTA+GGG | + | chr2_3:35539928-35539947 | Msa0289320:CDS | 55.0% |
GGTCCGTAGGGATGCTTTGA+AGG | + | chr2_3:35539940-35539959 | Msa0289320:CDS | 55.0% | |
TAGCGGCAGAGTGGAGTAGA+GGG | + | chr2_3:35541066-35541085 | Msa0289320:intron | 55.0% | |
! | TTAACGATAGTGGCCGCTCC+AGG | + | chr2_3:35541121-35541140 | Msa0289320:intron | 55.0% |
CATGGTGGCTGTATGGCGAT+GGG | - | chr2_3:35541375-35541394 | None:intergenic | 55.0% | |
GATGGATCCCACAGCAGCTT+TGG | + | chr2_3:35542076-35542095 | Msa0289320:intron | 55.0% | |
AGGTCTTGGCTCAGTTGGAG+CGG | + | chr2_3:35542349-35542368 | Msa0289320:intron | 55.0% | |
AAGCCAATGGACCTGTGCCA+CGG | + | chr2_3:35542886-35542905 | Msa0289320:CDS | 55.0% | |
AATCCGTGGCACAGGTCCAT+TGG | - | chr2_3:35542892-35542911 | None:intergenic | 55.0% | |
! | GGTTTTCCAGCCGAGAGGTC+AGG | + | chr2_3:35539735-35539754 | Msa0289320:CDS | 60.0% |
AGGTCAGGGCGGAGGTTGTT+AGG | + | chr2_3:35539750-35539769 | Msa0289320:CDS | 60.0% | |
GGTCAGGGCGGAGGTTGTTA+GGG | + | chr2_3:35539751-35539770 | Msa0289320:CDS | 60.0% | |
!! | GTGGTCACGGTTTGGTCCGT+AGG | + | chr2_3:35539927-35539946 | Msa0289320:CDS | 60.0% |
! | CCATGAGCTGCTGCTTGTGG+TGG | - | chr2_3:35540724-35540743 | None:intergenic | 60.0% |
CCACCACAAGCAGCAGCTCA+TGG | + | chr2_3:35540721-35540740 | Msa0289320:CDS | 60.0% | |
ACTCCACTCTGCCGCTACAG+CGG | - | chr2_3:35541063-35541082 | None:intergenic | 60.0% | |
GTAGCGGCAGAGTGGAGTAG+AGG | + | chr2_3:35541065-35541084 | Msa0289320:intron | 60.0% | |
AGAGGGTCGCCGCTACAATG+AGG | + | chr2_3:35541083-35541102 | Msa0289320:intron | 60.0% | |
CGCCAAGATCTCACCTGGAG+CGG | - | chr2_3:35541137-35541156 | None:intergenic | 60.0% | |
CGCTCCAGGTGAGATCTTGG+CGG | + | chr2_3:35541135-35541154 | Msa0289320:intron | 60.0% | |
CAGGTGAGATCTTGGCGGAG+CGG | + | chr2_3:35541140-35541159 | Msa0289320:intron | 60.0% | |
AGGTGAGATCTTGGCGGAGC+GGG | + | chr2_3:35541141-35541160 | Msa0289320:intron | 60.0% | |
GCATGGTGGCTGTATGGCGA+TGG | - | chr2_3:35541376-35541395 | None:intergenic | 60.0% | |
TTCCAGCCGAGAGGTCAGGG+CGG | + | chr2_3:35539739-35539758 | Msa0289320:CDS | 65.0% | |
CAACCTCCGCCCTGACCTCT+CGG | - | chr2_3:35539748-35539767 | None:intergenic | 65.0% | |
GCGAGATAGCGCCGCTGTAG+CGG | + | chr2_3:35541049-35541068 | Msa0289320:intron | 65.0% | |
GGCCGCTCCAGGTGAGATCT+TGG | + | chr2_3:35541132-35541151 | Msa0289320:intron | 65.0% | |
CGCTCCGCCAAGATCTCACC+TGG | - | chr2_3:35541142-35541161 | None:intergenic | 65.0% | |
GGTGAGATCTTGGCGGAGCG+GGG | + | chr2_3:35541142-35541161 | Msa0289320:intron | 65.0% | |
CTCCGCCCTGACCTCTCGGC+TGG | - | chr2_3:35539744-35539763 | None:intergenic | 75.0% | |
CAGCCGAGAGGTCAGGGCGG+AGG | + | chr2_3:35539742-35539761 | Msa0289320:CDS | 75.0% | |
GCGCCGCTGTAGCGGCAGAG+TGG | + | chr2_3:35541057-35541076 | Msa0289320:intron | 75.0% | |
! | GCGGAGCGGGGTCGCAGAGC+AGG | + | chr2_3:35541154-35541173 | Msa0289320:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 35539041 | 35542992 | 35539041 | ID=Msa0289320;Name=Msa0289320 |
chr2_3 | mRNA | 35539041 | 35542992 | 35539041 | ID=Msa0289320-mRNA-1;Parent=Msa0289320;Name=Msa0289320-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0.25|0|1|1|1|5|0|614 |
chr2_3 | exon | 35539041 | 35540383 | 35539041 | ID=Msa0289320-mRNA-1:exon:11509;Parent=Msa0289320-mRNA-1 |
chr2_3 | exon | 35540626 | 35540827 | 35540626 | ID=Msa0289320-mRNA-1:exon:11510;Parent=Msa0289320-mRNA-1 |
chr2_3 | exon | 35542132 | 35542248 | 35542132 | ID=Msa0289320-mRNA-1:exon:11511;Parent=Msa0289320-mRNA-1 |
chr2_3 | exon | 35542351 | 35542400 | 35542351 | ID=Msa0289320-mRNA-1:exon:11512;Parent=Msa0289320-mRNA-1 |
chr2_3 | exon | 35542860 | 35542992 | 35542860 | ID=Msa0289320-mRNA-1:exon:11513;Parent=Msa0289320-mRNA-1 |
chr2_3 | CDS | 35539041 | 35540383 | 35539041 | ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1 |
chr2_3 | CDS | 35540626 | 35540827 | 35540626 | ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1 |
chr2_3 | CDS | 35542132 | 35542248 | 35542132 | ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1 |
chr2_3 | CDS | 35542351 | 35542400 | 35542351 | ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1 |
chr2_3 | CDS | 35542860 | 35542992 | 35542860 | ID=Msa0289320-mRNA-1:cds;Parent=Msa0289320-mRNA-1 |
Gene Sequence |
Protein sequence |