Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289370 | KEH38906.1 | 65.992 | 247 | 73 | 2 | 5 | 245 | 1 | 242 | 7.09e-105 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289370 | sp|Q1G3Q4|RITF1_ARATH | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.53e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0289370 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289370 | MtrunA17_Chr2g0320561 | 68.145 | 248 | 68 | 2 | 4 | 245 | 1 | 243 | 9.69e-107 | 308 |
| Msa0289370 | MtrunA17_Chr4g0020811 | 94.483 | 145 | 8 | 0 | 2 | 146 | 1 | 145 | 1.85e-102 | 294 |
| Msa0289370 | MtrunA17_Chr2g0308401 | 94.406 | 143 | 8 | 0 | 4 | 146 | 1 | 143 | 1.08e-100 | 289 |
| Msa0289370 | MtrunA17_Chr2g0320521 | 64.000 | 250 | 66 | 4 | 2 | 245 | 1 | 232 | 1.61e-98 | 287 |
| Msa0289370 | MtrunA17_Chr2g0320551 | 70.323 | 155 | 41 | 1 | 4 | 153 | 1 | 155 | 4.66e-75 | 225 |
| Msa0289370 | MtrunA17_Chr1g0179781 | 39.200 | 250 | 96 | 8 | 2 | 244 | 1 | 201 | 3.94e-46 | 152 |
| Msa0289370 | MtrunA17_Chr5g0395181 | 37.131 | 237 | 98 | 6 | 8 | 244 | 22 | 207 | 1.61e-43 | 146 |
| Msa0289370 | MtrunA17_Chr5g0411151 | 35.772 | 246 | 108 | 7 | 3 | 244 | 31 | 230 | 4.41e-43 | 145 |
| Msa0289370 | MtrunA17_Chr4g0040071 | 36.555 | 238 | 105 | 7 | 8 | 244 | 16 | 208 | 3.65e-42 | 142 |
| Msa0289370 | MtrunA17_Chr7g0265291 | 38.645 | 251 | 98 | 10 | 1 | 244 | 1 | 202 | 7.66e-42 | 141 |
| Msa0289370 | MtrunA17_Chr8g0366581 | 48.551 | 138 | 61 | 3 | 8 | 145 | 34 | 161 | 9.29e-40 | 137 |
| Msa0289370 | MtrunA17_Chr2g0297251 | 35.270 | 241 | 129 | 12 | 9 | 244 | 39 | 257 | 9.53e-28 | 106 |
| Msa0289370 | MtrunA17_Chr7g0230511 | 30.769 | 260 | 139 | 12 | 6 | 244 | 7 | 246 | 5.72e-24 | 96.3 |
| Msa0289370 | MtrunA17_Chr4g0065041 | 27.668 | 253 | 155 | 8 | 9 | 244 | 10 | 251 | 3.02e-19 | 84.0 |
| Msa0289370 | MtrunA17_Chr4g0052451 | 38.554 | 83 | 49 | 1 | 60 | 142 | 10 | 90 | 1.36e-12 | 62.0 |
| Msa0289370 | MtrunA17_Chr8g0392151 | 30.201 | 149 | 87 | 5 | 9 | 144 | 15 | 159 | 3.56e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289370 | AT1G43000.2 | 39.669 | 242 | 116 | 6 | 3 | 244 | 12 | 223 | 6.76e-49 | 160 |
| Msa0289370 | AT1G43000.1 | 39.669 | 242 | 116 | 6 | 3 | 244 | 5 | 216 | 8.68e-49 | 160 |
| Msa0289370 | AT1G21000.2 | 38.492 | 252 | 128 | 9 | 3 | 244 | 9 | 243 | 7.37e-44 | 148 |
| Msa0289370 | AT1G21000.1 | 38.492 | 252 | 128 | 9 | 3 | 244 | 12 | 246 | 8.26e-44 | 148 |
| Msa0289370 | AT1G32700.1 | 36.864 | 236 | 106 | 5 | 9 | 244 | 14 | 206 | 1.18e-40 | 139 |
| Msa0289370 | AT4G17900.1 | 50.360 | 139 | 58 | 4 | 8 | 145 | 35 | 163 | 1.65e-40 | 139 |
| Msa0289370 | AT4G17900.2 | 50.360 | 139 | 58 | 4 | 8 | 145 | 21 | 149 | 3.66e-40 | 138 |
| Msa0289370 | AT1G76590.1 | 35.628 | 247 | 129 | 9 | 8 | 244 | 19 | 245 | 5.36e-40 | 138 |
| Msa0289370 | AT2G27930.1 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.48e-35 | 124 |
| Msa0289370 | AT2G27930.4 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.48e-35 | 124 |
| Msa0289370 | AT2G27930.3 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 7.23e-35 | 123 |
| Msa0289370 | AT2G27930.2 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 7.23e-35 | 123 |
| Msa0289370 | AT1G32700.2 | 36.058 | 208 | 91 | 4 | 37 | 244 | 2 | 167 | 1.90e-32 | 117 |
| Msa0289370 | AT5G46710.3 | 33.891 | 239 | 112 | 9 | 9 | 244 | 14 | 209 | 4.88e-29 | 109 |
| Msa0289370 | AT5G46710.1 | 33.891 | 239 | 112 | 9 | 9 | 244 | 30 | 225 | 7.74e-29 | 108 |
| Msa0289370 | AT5G46710.2 | 42.222 | 135 | 67 | 4 | 9 | 142 | 30 | 154 | 5.30e-28 | 105 |
| Msa0289370 | AT1G31040.1 | 30.204 | 245 | 139 | 8 | 9 | 244 | 21 | 242 | 1.50e-26 | 103 |
| Msa0289370 | AT2G12646.1 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.65e-20 | 85.9 |
| Msa0289370 | AT2G12646.2 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.65e-20 | 85.9 |
| Msa0289370 | AT2G12646.3 | 38.060 | 134 | 72 | 5 | 9 | 142 | 5 | 127 | 8.15e-20 | 85.9 |
| Msa0289370 | AT3G60670.1 | 38.806 | 134 | 71 | 4 | 9 | 142 | 9 | 131 | 4.19e-19 | 83.6 |
| Msa0289370 | AT2G27930.5 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.30e-18 | 79.7 |
| Msa0289370 | AT2G27930.6 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.30e-18 | 79.7 |
| Msa0289370 | AT2G01818.1 | 29.752 | 242 | 133 | 9 | 9 | 245 | 13 | 222 | 1.72e-16 | 76.3 |
Find 31 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAAAGGAATACCTTAT+AGG | 0.254520 | 2_3:+35570397 | Msa0289370:CDS |
| TTACCAATCTTGTACCTCTT+AGG | 0.298690 | 2_3:-35569376 | None:intergenic |
| AAGAAAAGGAATACCTTATA+GGG | 0.333491 | 2_3:+35570398 | Msa0289370:CDS |
| TTTATGCAAGATCCACATAA+TGG | 0.340696 | 2_3:-35569033 | None:intergenic |
| CACAAAAGAGATGGAAGAAA+TGG | 0.353414 | 2_3:+35570143 | Msa0289370:CDS |
| GGAAGAGGAAGAAGAGCAAA+AGG | 0.388538 | 2_3:+35570287 | Msa0289370:CDS |
| AGGTACAAGATTGGTAAAAT+TGG | 0.400779 | 2_3:+35569382 | Msa0289370:CDS |
| CAACACTTACTTGGATTACT+CGG | 0.451223 | 2_3:-35569074 | None:intergenic |
| CAATCTTGTACCTCTTAGGT+TGG | 0.478301 | 2_3:-35569372 | None:intergenic |
| AAGTCCAATTCAAGAAGAAA+AGG | 0.488785 | 2_3:+35570384 | Msa0289370:CDS |
| AATCTTGTACCTCTTAGGTT+GGG | 0.514191 | 2_3:-35569371 | None:intergenic |
| TACAAGCATGTTGACATCCT+CGG | 0.515051 | 2_3:+35569289 | Msa0289370:CDS |
| TGCAATGGCAATCCATTATG+TGG | 0.515095 | 2_3:+35569021 | Msa0289370:CDS |
| GAGCTCGTGCCCAACCTAAG+AGG | 0.520699 | 2_3:+35569362 | Msa0289370:CDS |
| ATTGATGAAGAAAATGAAGA+GGG | 0.521661 | 2_3:+35570264 | Msa0289370:CDS |
| AAACGAAAACAAGGAGAAGC+AGG | 0.534783 | 2_3:+35570240 | Msa0289370:CDS |
| CAACCTAAGAGGTACAAGAT+TGG | 0.546024 | 2_3:+35569373 | Msa0289370:CDS |
| TTTCGTAAGCACAAAAGAGA+TGG | 0.552789 | 2_3:+35570134 | Msa0289370:CDS |
| AGGATATGATGTTGGTACCC+TGG | 0.557529 | 2_3:+35568905 | Msa0289370:intron |
| GACATGCGATAGAAATCTTG+TGG | 0.559118 | 2_3:+35569429 | Msa0289370:CDS |
| ATTGCTGCATGAATCAATCA+AGG | 0.566797 | 2_3:+35570170 | Msa0289370:CDS |
| CACAATCTGAAACGAAAACA+AGG | 0.567313 | 2_3:+35570231 | Msa0289370:CDS |
| AATTGATGAAGAAAATGAAG+AGG | 0.587208 | 2_3:+35570263 | Msa0289370:CDS |
| AACATGCTTGTAAATTTCAG+TGG | 0.588826 | 2_3:-35569278 | None:intergenic |
| ATGGATTGCCATTGCAATCG+AGG | 0.594757 | 2_3:-35569014 | None:intergenic |
| TCACGTAGGTTTGAATTCCG+AGG | 0.612981 | 2_3:-35569306 | None:intergenic |
| TGATGAAGAAAATGAAGAGG+GGG | 0.616125 | 2_3:+35570266 | Msa0289370:CDS |
| AAGTTCTGCCTCGATTGCAA+TGG | 0.617127 | 2_3:+35569006 | Msa0289370:CDS |
| GCATGCCAAAGAGCAAAAGT+AGG | 0.621061 | 2_3:-35569458 | None:intergenic |
| TTGATGAAGAAAATGAAGAG+GGG | 0.641325 | 2_3:+35570265 | Msa0289370:CDS |
| AGTAGAGCTATTGATCACGT+AGG | 0.696424 | 2_3:-35569320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCATTTTTTTTTTACTT+TGG | + | chr2_3:35569181-35569200 | Msa0289370:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | + | chr2_3:35569580-35569599 | Msa0289370:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | + | chr2_3:35569610-35569629 | Msa0289370:intron | 10.0% |
| !!! | TAATCATTTTTTTTTTACTT+TGG | + | chr2_3:35569181-35569200 | Msa0289370:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | + | chr2_3:35569580-35569599 | Msa0289370:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | + | chr2_3:35569610-35569629 | Msa0289370:intron | 10.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | + | chr2_3:35568885-35568904 | Msa0289370:intron | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | + | chr2_3:35569227-35569246 | Msa0289370:intron | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | - | chr2_3:35569923-35569942 | None:intergenic | 15.0% |
| !! | AAGAAATAAATGGAATAAAA+AGG | - | chr2_3:35569998-35570017 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | + | chr2_3:35570101-35570120 | Msa0289370:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | + | chr2_3:35570105-35570124 | Msa0289370:intron | 15.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | + | chr2_3:35568885-35568904 | Msa0289370:intron | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | + | chr2_3:35569227-35569246 | Msa0289370:intron | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | - | chr2_3:35569923-35569942 | None:intergenic | 15.0% |
| !! | AAGAAATAAATGGAATAAAA+AGG | - | chr2_3:35569998-35570017 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | + | chr2_3:35570101-35570120 | Msa0289370:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | + | chr2_3:35570105-35570124 | Msa0289370:intron | 15.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | - | chr2_3:35569220-35569239 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | - | chr2_3:35569221-35569240 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | + | chr2_3:35569659-35569678 | Msa0289370:intron | 20.0% |
| !! | AATAAACAGAAACTATCAAA+TGG | - | chr2_3:35569876-35569895 | None:intergenic | 20.0% |
| !! | TGGATAATGAAAGAAATAAA+TGG | - | chr2_3:35570008-35570027 | None:intergenic | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | + | chr2_3:35570104-35570123 | Msa0289370:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | - | chr2_3:35570204-35570223 | None:intergenic | 20.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | - | chr2_3:35569220-35569239 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | - | chr2_3:35569221-35569240 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | + | chr2_3:35569659-35569678 | Msa0289370:intron | 20.0% |
| !! | AATAAACAGAAACTATCAAA+TGG | - | chr2_3:35569876-35569895 | None:intergenic | 20.0% |
| !! | TGGATAATGAAAGAAATAAA+TGG | - | chr2_3:35570008-35570027 | None:intergenic | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | + | chr2_3:35570104-35570123 | Msa0289370:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | - | chr2_3:35570204-35570223 | None:intergenic | 20.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | + | chr2_3:35568897-35568916 | Msa0289370:intron | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | + | chr2_3:35569847-35569866 | Msa0289370:intron | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | + | chr2_3:35569848-35569867 | Msa0289370:intron | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | - | chr2_3:35569947-35569966 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | + | chr2_3:35569950-35569969 | Msa0289370:intron | 25.0% |
| !! | AAATAACGAAAGTGTAACAA+TGG | - | chr2_3:35570028-35570047 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | + | chr2_3:35570263-35570282 | Msa0289370:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | + | chr2_3:35570264-35570283 | Msa0289370:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | - | chr2_3:35570391-35570410 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | + | chr2_3:35570398-35570417 | Msa0289370:CDS | 25.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | + | chr2_3:35568897-35568916 | Msa0289370:intron | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | + | chr2_3:35569847-35569866 | Msa0289370:intron | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | + | chr2_3:35569848-35569867 | Msa0289370:intron | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | - | chr2_3:35569947-35569966 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | + | chr2_3:35569950-35569969 | Msa0289370:intron | 25.0% |
| !! | AAATAACGAAAGTGTAACAA+TGG | - | chr2_3:35570028-35570047 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | + | chr2_3:35570263-35570282 | Msa0289370:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | + | chr2_3:35570264-35570283 | Msa0289370:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | - | chr2_3:35570391-35570410 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | + | chr2_3:35570398-35570417 | Msa0289370:CDS | 25.0% |
| TTTATGCAAGATCCACATAA+TGG | - | chr2_3:35569036-35569055 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | - | chr2_3:35569086-35569105 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | - | chr2_3:35569281-35569300 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | + | chr2_3:35569382-35569401 | Msa0289370:CDS | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | - | chr2_3:35569499-35569518 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | - | chr2_3:35569846-35569865 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | - | chr2_3:35569965-35569984 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | + | chr2_3:35569963-35569982 | Msa0289370:intron | 30.0% | |
| GAATATATAAAAAAGGAGGG+AGG | + | chr2_3:35570108-35570127 | Msa0289370:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | + | chr2_3:35570265-35570284 | Msa0289370:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | + | chr2_3:35570306-35570325 | Msa0289370:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | + | chr2_3:35570384-35570403 | Msa0289370:CDS | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | + | chr2_3:35570397-35570416 | Msa0289370:CDS | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | - | chr2_3:35570414-35570433 | None:intergenic | 30.0% |
| TTTATGCAAGATCCACATAA+TGG | - | chr2_3:35569036-35569055 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | - | chr2_3:35569086-35569105 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | - | chr2_3:35569281-35569300 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | + | chr2_3:35569382-35569401 | Msa0289370:CDS | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | - | chr2_3:35569499-35569518 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | - | chr2_3:35569846-35569865 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | - | chr2_3:35569965-35569984 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | + | chr2_3:35569963-35569982 | Msa0289370:intron | 30.0% | |
| GAATATATAAAAAAGGAGGG+AGG | + | chr2_3:35570108-35570127 | Msa0289370:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | + | chr2_3:35570265-35570284 | Msa0289370:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | + | chr2_3:35570306-35570325 | Msa0289370:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | + | chr2_3:35570384-35570403 | Msa0289370:CDS | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | + | chr2_3:35570397-35570416 | Msa0289370:CDS | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | - | chr2_3:35570414-35570433 | None:intergenic | 30.0% |
| !! | ACTCATTTTTCGACTCTCTT+GGG | - | chr2_3:35568981-35569000 | None:intergenic | 35.0% |
| CAACACTTACTTGGATTACT+CGG | - | chr2_3:35569077-35569096 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | - | chr2_3:35569374-35569393 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | - | chr2_3:35569379-35569398 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | + | chr2_3:35569453-35569472 | Msa0289370:CDS | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | - | chr2_3:35569840-35569859 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | + | chr2_3:35569953-35569972 | Msa0289370:intron | 35.0% | |
| TTTCGTAAGCACAAAAGAGA+TGG | + | chr2_3:35570134-35570153 | Msa0289370:CDS | 35.0% | |
| CACAAAAGAGATGGAAGAAA+TGG | + | chr2_3:35570143-35570162 | Msa0289370:CDS | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | + | chr2_3:35570170-35570189 | Msa0289370:CDS | 35.0% | |
| ! | CACAATCTGAAACGAAAACA+AGG | + | chr2_3:35570231-35570250 | Msa0289370:CDS | 35.0% |
| TGATGAAGAAAATGAAGAGG+GGG | + | chr2_3:35570266-35570285 | Msa0289370:CDS | 35.0% | |
| !! | ACTCATTTTTCGACTCTCTT+GGG | - | chr2_3:35568981-35569000 | None:intergenic | 35.0% |
| CAACACTTACTTGGATTACT+CGG | - | chr2_3:35569077-35569096 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | - | chr2_3:35569374-35569393 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | - | chr2_3:35569379-35569398 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | + | chr2_3:35569453-35569472 | Msa0289370:CDS | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | - | chr2_3:35569840-35569859 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | + | chr2_3:35569953-35569972 | Msa0289370:intron | 35.0% | |
| TTTCGTAAGCACAAAAGAGA+TGG | + | chr2_3:35570134-35570153 | Msa0289370:CDS | 35.0% | |
| CACAAAAGAGATGGAAGAAA+TGG | + | chr2_3:35570143-35570162 | Msa0289370:CDS | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | + | chr2_3:35570170-35570189 | Msa0289370:CDS | 35.0% | |
| ! | CACAATCTGAAACGAAAACA+AGG | + | chr2_3:35570231-35570250 | Msa0289370:CDS | 35.0% |
| TGATGAAGAAAATGAAGAGG+GGG | + | chr2_3:35570266-35570285 | Msa0289370:CDS | 35.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | + | chr2_3:35568921-35568940 | Msa0289370:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | - | chr2_3:35568925-35568944 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | - | chr2_3:35568926-35568945 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | - | chr2_3:35568982-35569001 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | + | chr2_3:35569021-35569040 | Msa0289370:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | + | chr2_3:35569289-35569308 | Msa0289370:CDS | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | - | chr2_3:35569323-35569342 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | - | chr2_3:35569375-35569394 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | + | chr2_3:35569373-35569392 | Msa0289370:CDS | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | + | chr2_3:35569429-35569448 | Msa0289370:CDS | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | + | chr2_3:35569473-35569492 | Msa0289370:intron | 40.0% | |
| AAACGAAAACAAGGAGAAGC+AGG | + | chr2_3:35570240-35570259 | Msa0289370:CDS | 40.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | + | chr2_3:35568921-35568940 | Msa0289370:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | - | chr2_3:35568925-35568944 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | - | chr2_3:35568926-35568945 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | - | chr2_3:35568982-35569001 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | + | chr2_3:35569021-35569040 | Msa0289370:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | + | chr2_3:35569289-35569308 | Msa0289370:CDS | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | - | chr2_3:35569323-35569342 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | - | chr2_3:35569375-35569394 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | + | chr2_3:35569373-35569392 | Msa0289370:CDS | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | + | chr2_3:35569429-35569448 | Msa0289370:CDS | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | + | chr2_3:35569473-35569492 | Msa0289370:intron | 40.0% | |
| AAACGAAAACAAGGAGAAGC+AGG | + | chr2_3:35570240-35570259 | Msa0289370:CDS | 40.0% | |
| AGGATATGATGTTGGTACCC+TGG | + | chr2_3:35568905-35568924 | Msa0289370:intron | 45.0% | |
| !! | CATTTTTCGACTCTCTTGGG+TGG | - | chr2_3:35568978-35568997 | None:intergenic | 45.0% |
| AAGTTCTGCCTCGATTGCAA+TGG | + | chr2_3:35569006-35569025 | Msa0289370:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | - | chr2_3:35569017-35569036 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | - | chr2_3:35569309-35569328 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | - | chr2_3:35569461-35569480 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2_3:35569462-35569481 | Msa0289370:CDS | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | - | chr2_3:35569835-35569854 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | + | chr2_3:35570272-35570291 | Msa0289370:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | + | chr2_3:35570287-35570306 | Msa0289370:CDS | 45.0% | |
| AGGATATGATGTTGGTACCC+TGG | + | chr2_3:35568905-35568924 | Msa0289370:intron | 45.0% | |
| !! | CATTTTTCGACTCTCTTGGG+TGG | - | chr2_3:35568978-35568997 | None:intergenic | 45.0% |
| AAGTTCTGCCTCGATTGCAA+TGG | + | chr2_3:35569006-35569025 | Msa0289370:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | - | chr2_3:35569017-35569036 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | - | chr2_3:35569309-35569328 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | - | chr2_3:35569461-35569480 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2_3:35569462-35569481 | Msa0289370:CDS | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | - | chr2_3:35569835-35569854 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | + | chr2_3:35570272-35570291 | Msa0289370:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | + | chr2_3:35570287-35570306 | Msa0289370:CDS | 45.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | + | chr2_3:35569362-35569381 | Msa0289370:CDS | 60.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | + | chr2_3:35569362-35569381 | Msa0289370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 35568820 | 35570434 | 35568820 | ID=Msa0289370;Name=Msa0289370 |
| chr2_3 | mRNA | 35568820 | 35570434 | 35568820 | ID=Msa0289370-mRNA-1;Parent=Msa0289370;Name=Msa0289370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.75|0.66|0.75|4|0|245 |
| chr2_3 | exon | 35568820 | 35568825 | 35568820 | ID=Msa0289370-mRNA-1:exon:11488;Parent=Msa0289370-mRNA-1 |
| chr2_3 | exon | 35568907 | 35569086 | 35568907 | ID=Msa0289370-mRNA-1:exon:11489;Parent=Msa0289370-mRNA-1 |
| chr2_3 | exon | 35569244 | 35569483 | 35569244 | ID=Msa0289370-mRNA-1:exon:11490;Parent=Msa0289370-mRNA-1 |
| chr2_3 | exon | 35570123 | 35570434 | 35570123 | ID=Msa0289370-mRNA-1:exon:11491;Parent=Msa0289370-mRNA-1 |
| chr2_3 | CDS | 35568820 | 35568825 | 35568820 | ID=Msa0289370-mRNA-1:cds;Parent=Msa0289370-mRNA-1 |
| chr2_3 | CDS | 35568907 | 35569086 | 35568907 | ID=Msa0289370-mRNA-1:cds;Parent=Msa0289370-mRNA-1 |
| chr2_3 | CDS | 35569244 | 35569483 | 35569244 | ID=Msa0289370-mRNA-1:cds;Parent=Msa0289370-mRNA-1 |
| chr2_3 | CDS | 35570123 | 35570434 | 35570123 | ID=Msa0289370-mRNA-1:cds;Parent=Msa0289370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
