Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289630 | XP_003610737.1 | 70.408 | 98 | 28 | 1 | 8 | 105 | 81 | 177 | 2.99e-33 | 131 |
| Msa0289630 | XP_003610737.1 | 87.766 | 188 | 9 | 1 | 96 | 269 | 3 | 190 | 7.09e-111 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289630 | sp|P05332|YP20_BACLI | 32.530 | 166 | 95 | 3 | 114 | 263 | 8 | 172 | 6.01e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289630 | G7K3P2 | 70.408 | 98 | 28 | 1 | 8 | 105 | 81 | 177 | 1.43e-33 | 131 |
| Msa0289630 | G7K3P2 | 87.766 | 188 | 9 | 1 | 96 | 269 | 3 | 190 | 3.39e-111 | 329 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0289630 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289630 | MtrunA17_Chr5g0394621 | 87.766 | 188 | 9 | 1 | 96 | 269 | 3 | 190 | 6.52e-115 | 329 |
| Msa0289630 | MtrunA17_Chr5g0394621 | 70.408 | 98 | 28 | 1 | 8 | 105 | 81 | 177 | 2.75e-37 | 131 |
| Msa0289630 | MtrunA17_Chr5g0394631 | 58.154 | 325 | 71 | 7 | 7 | 269 | 80 | 401 | 9.04e-110 | 324 |
| Msa0289630 | MtrunA17_Chr5g0394631 | 73.446 | 177 | 33 | 1 | 97 | 259 | 4 | 180 | 4.79e-84 | 258 |
| Msa0289630 | MtrunA17_Chr1g0204951 | 61.497 | 187 | 58 | 2 | 97 | 269 | 4 | 190 | 1.75e-75 | 229 |
| Msa0289630 | MtrunA17_Chr1g0204951 | 64.706 | 85 | 29 | 1 | 21 | 105 | 94 | 177 | 6.50e-29 | 109 |
| Msa0289630 | MtrunA17_Chr1g0204971 | 58.289 | 187 | 64 | 2 | 97 | 269 | 4 | 190 | 7.71e-71 | 217 |
| Msa0289630 | MtrunA17_Chr1g0204971 | 64.474 | 76 | 27 | 0 | 21 | 96 | 94 | 169 | 6.58e-26 | 101 |
| Msa0289630 | MtrunA17_Chr7g0273661 | 41.558 | 154 | 79 | 2 | 109 | 251 | 3 | 156 | 1.31e-38 | 134 |
| Msa0289630 | MtrunA17_Chr7g0273661 | 56.716 | 67 | 29 | 0 | 29 | 95 | 86 | 152 | 5.80e-17 | 76.6 |
| Msa0289630 | MtrunA17_Chr7g0223351 | 39.634 | 164 | 88 | 2 | 113 | 266 | 7 | 169 | 8.18e-34 | 122 |
| Msa0289630 | MtrunA17_Chr7g0223351 | 51.471 | 68 | 33 | 0 | 29 | 96 | 84 | 151 | 5.92e-16 | 74.3 |
| Msa0289630 | MtrunA17_Chr7g0223361 | 39.286 | 168 | 90 | 2 | 110 | 266 | 4 | 170 | 1.58e-32 | 118 |
| Msa0289630 | MtrunA17_Chr7g0223361 | 54.545 | 66 | 30 | 0 | 29 | 94 | 85 | 150 | 3.61e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289630 | AT2G32030.1 | 48.333 | 180 | 76 | 3 | 96 | 266 | 14 | 185 | 1.46e-54 | 176 |
| Msa0289630 | AT2G32030.1 | 67.647 | 68 | 22 | 0 | 29 | 96 | 100 | 167 | 1.19e-22 | 93.2 |
| Msa0289630 | AT2G32020.1 | 52.469 | 162 | 68 | 2 | 114 | 266 | 19 | 180 | 7.81e-52 | 169 |
| Msa0289630 | AT2G32020.1 | 68.657 | 67 | 21 | 0 | 30 | 96 | 96 | 162 | 1.97e-23 | 95.1 |
| Msa0289630 | AT3G22560.1 | 37.059 | 170 | 94 | 3 | 110 | 266 | 3 | 172 | 2.48e-31 | 115 |
| Msa0289630 | AT3G22560.1 | 43.333 | 90 | 46 | 2 | 7 | 95 | 68 | 153 | 1.51e-15 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATCAAATGTGCAGAAAT+TGG | 0.218349 | 2_3:-35837153 | Msa0289630:CDS |
| CATCAAGGTCAGAAAGATTA+AGG | 0.227074 | 2_3:+35835016 | None:intergenic |
| TCCTAAGAACTCCCTCCTTT+TGG | 0.260104 | 2_3:+35836968 | None:intergenic |
| CTCTTCTTTGTCACGTGGTT+TGG | 0.270188 | 2_3:+35835071 | None:intergenic |
| CTCCAACTAATTCAATTGTT+TGG | 0.272334 | 2_3:-35834532 | Msa0289630:CDS |
| TGTTGGGTCTCAAAGAGTTT+TGG | 0.282550 | 2_3:-35834653 | Msa0289630:CDS |
| ACATATACAACTTAAATAAT+AGG | 0.291976 | 2_3:+35834433 | None:intergenic |
| ATGTTCTAGGCTCTAAATAT+TGG | 0.292142 | 2_3:-35834777 | Msa0289630:CDS |
| GCAGAACTTGGCTATGTTCT+AGG | 0.302641 | 2_3:-35834790 | Msa0289630:CDS |
| TAAGGGGTCGGAGTGTGATT+TGG | 0.307480 | 2_3:+35835034 | None:intergenic |
| ATGTTCTAGGCTCTAAATAC+TGG | 0.313478 | 2_3:-35837128 | Msa0289630:CDS |
| TGTTCTAGGCTCTAAATATT+GGG | 0.316974 | 2_3:-35834776 | Msa0289630:CDS |
| AAGGGGTCGGAGTGTGATTT+GGG | 0.320072 | 2_3:+35835035 | None:intergenic |
| TGCATCAATGATCGTGCAAT+TGG | 0.335248 | 2_3:-35834865 | Msa0289630:CDS |
| GCAGAAATTGGGTATGTTCT+AGG | 0.344662 | 2_3:-35837141 | Msa0289630:CDS |
| CATCATCTATCTTATTTGTA+TGG | 0.348271 | 2_3:+35834476 | None:intergenic |
| GCTCTAAATATTGGGGTAAA+GGG | 0.356917 | 2_3:-35834768 | Msa0289630:CDS |
| TTCCAAACAATTGAATTAGT+TGG | 0.367321 | 2_3:+35834530 | None:intergenic |
| ATATAGCTACTAAGTTTCTA+TGG | 0.380710 | 2_3:-35834900 | Msa0289630:CDS |
| TCCAAAAGGAGGGAGTTCTT+AGG | 0.394554 | 2_3:-35836969 | Msa0289630:CDS |
| ATTCTGTGAGTTGTCTTACT+TGG | 0.404239 | 2_3:-35834707 | Msa0289630:CDS |
| GGCTCTAAATACTGGGGTAA+AGG | 0.409375 | 2_3:-35837120 | Msa0289630:CDS |
| TAGATTGGAAAGGTTGGAAT+AGG | 0.410331 | 2_3:-35837311 | Msa0289630:CDS |
| TTGAAATAGATTGGAAAGGT+TGG | 0.415684 | 2_3:-35837317 | None:intergenic |
| CACGTTTGCTGTGAAACAAA+TGG | 0.422199 | 2_3:-35837091 | Msa0289630:CDS |
| GGCTCTAAATATTGGGGTAA+AGG | 0.422886 | 2_3:-35834769 | Msa0289630:CDS |
| CTTGTTGATGTGGATAATGT+TGG | 0.439455 | 2_3:-35837021 | Msa0289630:CDS |
| GCTCTAAATACTGGGGTAAA+GGG | 0.442106 | 2_3:-35837119 | Msa0289630:CDS |
| CAAAGAGTGCTTGAGAAAGT+TGG | 0.446874 | 2_3:-35836994 | Msa0289630:CDS |
| GAATCAAATGTGCAGAAATT+GGG | 0.456981 | 2_3:-35837152 | Msa0289630:CDS |
| GTTGATGCCATCATCCTTGC+TGG | 0.459050 | 2_3:+35834933 | None:intergenic |
| AGTGGCCAAGTTCTGCTCTT+GGG | 0.462852 | 2_3:-35834965 | Msa0289630:CDS |
| TGCTGTGAAACAAATGGTTA+AGG | 0.473285 | 2_3:-35837085 | Msa0289630:CDS |
| AAGTGGCCAAGTTCTGCTCT+TGG | 0.474319 | 2_3:-35834966 | Msa0289630:CDS |
| AGGAAATATTTGTTCATGAA+AGG | 0.480337 | 2_3:-35834598 | Msa0289630:CDS |
| AGGAACAAATGTGCAGAACT+TGG | 0.481600 | 2_3:-35834802 | Msa0289630:CDS |
| GTGAGTTGTCTTACTTGGAA+AGG | 0.487957 | 2_3:-35834702 | Msa0289630:CDS |
| GCTTGAAGCTTTAGTTGATG+TGG | 0.488968 | 2_3:-35834680 | Msa0289630:CDS |
| TTCTGACCTTGATGATCTCA+TGG | 0.490514 | 2_3:-35835007 | Msa0289630:CDS |
| ATCAAGGTCAGAAAGATTAA+GGG | 0.492658 | 2_3:+35835017 | None:intergenic |
| TAGTTGATGTGGAAAATGTT+GGG | 0.494202 | 2_3:-35834669 | Msa0289630:CDS |
| TGAGAAAGTTGGTTTCCAAA+AGG | 0.498958 | 2_3:-35836983 | Msa0289630:CDS |
| GCATCAATGATCGTGCAATT+GGG | 0.508704 | 2_3:-35834864 | Msa0289630:intron |
| TTAGTTGATGTGGAAAATGT+TGG | 0.523001 | 2_3:-35834670 | Msa0289630:CDS |
| TGTTCTAGGCTCTAAATACT+GGG | 0.526941 | 2_3:-35837127 | Msa0289630:CDS |
| TTGTTGATGTGGATAATGTT+GGG | 0.535303 | 2_3:-35837020 | Msa0289630:CDS |
| ACCTTGATGATCTCATGGTA+TGG | 0.538119 | 2_3:-35835002 | Msa0289630:CDS |
| GAAAGTTGGTTTCCAAAAGG+AGG | 0.543592 | 2_3:-35836980 | Msa0289630:CDS |
| TGTTGTGAAACAAGTGGTTA+AGG | 0.545474 | 2_3:-35834734 | Msa0289630:CDS |
| AATAATAGGTGTCATAGAGA+TGG | 0.552262 | 2_3:+35834447 | None:intergenic |
| CTCTACGCCAGCAAGGATGA+TGG | 0.563263 | 2_3:-35834940 | Msa0289630:CDS |
| CTCTAAATATTGGGGTAAAG+GGG | 0.564900 | 2_3:-35834767 | Msa0289630:CDS |
| GAGTTCCCAAGAGCAGAACT+TGG | 0.571214 | 2_3:+35834960 | None:intergenic |
| GCTTGAAGCTCTTGTTGATG+TGG | 0.580383 | 2_3:-35837031 | Msa0289630:CDS |
| ATTCTCTCTTCTTTGTCACG+TGG | 0.580393 | 2_3:+35835066 | None:intergenic |
| GGTCAGAAAGATTAAGGGGT+CGG | 0.585362 | 2_3:+35835022 | None:intergenic |
| AAAGTTGGTTTCCAAAAGGA+GGG | 0.596054 | 2_3:-35836979 | Msa0289630:CDS |
| CACTTGTTTCACAACACACG+TGG | 0.596860 | 2_3:+35834741 | None:intergenic |
| GTTCTAGGCTCTAAATATTG+GGG | 0.619040 | 2_3:-35834775 | Msa0289630:CDS |
| ATGGTTGAAATAGATTGGAA+AGG | 0.631542 | 2_3:-35837321 | None:intergenic |
| TCCATACCATGAGATCATCA+AGG | 0.632686 | 2_3:+35835001 | None:intergenic |
| TCAAGGTCAGAAAGATTAAG+GGG | 0.633672 | 2_3:+35835018 | None:intergenic |
| TTGGGAACTCTACGCCAGCA+AGG | 0.634354 | 2_3:-35834947 | Msa0289630:CDS |
| CATTTGTTTCACAGCAAACG+TGG | 0.659491 | 2_3:+35837092 | None:intergenic |
| GTTCTAGGCTCTAAATACTG+GGG | 0.712321 | 2_3:-35837126 | Msa0289630:CDS |
| CACGTGTGTTGTGAAACAAG+TGG | 0.736637 | 2_3:-35834740 | Msa0289630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACCTTTTTATTAATTTAT+TGG | - | chr2_3:35834964-35834983 | Msa0289630:CDS | 10.0% |
| !!! | TTTTTTTTTGCTTATAATTT+GGG | + | chr2_3:35835119-35835138 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTGCTTATAATT+TGG | + | chr2_3:35835120-35835139 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTTGTTGTAA+GGG | + | chr2_3:35835691-35835710 | None:intergenic | 10.0% |
| !!! | TTTATTTATTTTTTGTTGTA+AGG | + | chr2_3:35835692-35835711 | None:intergenic | 10.0% |
| !! | ACTAAAAAAAATATTTCATA+TGG | + | chr2_3:35835905-35835924 | None:intergenic | 10.0% |
| !!! | TATGAAATATTTTTTTTAGT+AGG | - | chr2_3:35835905-35835924 | Msa0289630:intron | 10.0% |
| !!! | TTTTATTTTATTCTAAATCT+TGG | + | chr2_3:35836103-35836122 | None:intergenic | 10.0% |
| !! | ATTGCTTACTATTTAAAAAA+AGG | + | chr2_3:35834515-35834534 | None:intergenic | 15.0% |
| !! | CAACCAATAAATTAATAAAA+AGG | + | chr2_3:35834970-35834989 | None:intergenic | 15.0% |
| !! | AAAACTAAAACATAAGAATT+TGG | - | chr2_3:35835153-35835172 | Msa0289630:intron | 15.0% |
| !!! | TTCTTTGAAAAAAGTTTTAT+AGG | - | chr2_3:35835194-35835213 | Msa0289630:intron | 15.0% |
| !!! | TGTTTTTTTTGCTTATATTA+TGG | - | chr2_3:35835378-35835397 | Msa0289630:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATATTAT+GGG | - | chr2_3:35835379-35835398 | Msa0289630:intron | 15.0% |
| !!! | TGTAAAATATGTTTTTTTAG+AGG | + | chr2_3:35835496-35835515 | None:intergenic | 15.0% |
| !! | TTCATATGGAAATTATTAAA+TGG | + | chr2_3:35835891-35835910 | None:intergenic | 15.0% |
| !!! | TTTGATCACAAATATTTTTT+TGG | - | chr2_3:35836236-35836255 | Msa0289630:intron | 15.0% |
| !! | TTATAGTTATATATCAGTAA+TGG | - | chr2_3:35836272-35836291 | Msa0289630:intron | 15.0% |
| !! | ACTTGAATAATGTATTAAAA+TGG | + | chr2_3:35836406-35836425 | None:intergenic | 15.0% |
| !!! | ATTCATTGTATTTTCATACT+TGG | - | chr2_3:35834694-35834713 | Msa0289630:CDS | 20.0% |
| !! | ATTTAATCATAGTTGAAGAT+CGG | + | chr2_3:35834867-35834886 | None:intergenic | 20.0% |
| !!! | TTATTAATTTATTGGTTGTC+CGG | - | chr2_3:35834972-35834991 | Msa0289630:CDS | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | - | chr2_3:35835219-35835238 | Msa0289630:intron | 20.0% |
| !!! | TGTCTTTTTTGCTTATATTT+TGG | - | chr2_3:35835342-35835361 | Msa0289630:intron | 20.0% |
| !!! | GTCTTTTTTGCTTATATTTT+GGG | - | chr2_3:35835343-35835362 | Msa0289630:intron | 20.0% |
| !!! | ACTATAGTGCATATTTTTTT+TGG | - | chr2_3:35835621-35835640 | Msa0289630:intron | 20.0% |
| ! | TATTTCAACCATACCAAAAA+CGG | + | chr2_3:35834480-35834499 | None:intergenic | 25.0% |
| !! | TTGTATTTTCATACTTGGAA+AGG | - | chr2_3:35834699-35834718 | Msa0289630:CDS | 25.0% |
| !! | AGGAAGTATGTATTCTTTAA+AGG | - | chr2_3:35834803-35834822 | Msa0289630:CDS | 25.0% |
| !! | CCTCTAATATTTTCTCAATT+TGG | + | chr2_3:35834898-35834917 | None:intergenic | 25.0% |
| ! | CCAAATTGAGAAAATATTAG+AGG | - | chr2_3:35834895-35834914 | Msa0289630:CDS | 25.0% |
| ! | AGATTGTACAATGATATATC+TGG | + | chr2_3:35835020-35835039 | None:intergenic | 25.0% |
| ! | AATCTCCTATCAAGTAATTA+AGG | - | chr2_3:35835035-35835054 | Msa0289630:CDS | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | + | chr2_3:35835115-35835134 | None:intergenic | 25.0% |
| !!! | AAACAATTTTCATTGGCTAT+TGG | - | chr2_3:35835226-35835245 | Msa0289630:intron | 25.0% |
| !! | TTTTTGCTTATATTATGGGA+CGG | - | chr2_3:35835383-35835402 | Msa0289630:intron | 25.0% |
| ! | AGAAATTACATACATATGTG+TGG | + | chr2_3:35835448-35835467 | None:intergenic | 25.0% |
| ! | CAATATCTCATGAAATCTAT+TGG | - | chr2_3:35835585-35835604 | Msa0289630:intron | 25.0% |
| !!! | ATATTTTTTTTAGTAGGTCG+CGG | - | chr2_3:35835911-35835930 | Msa0289630:intron | 25.0% |
| !! | TTAAGTGTTTTTCATGAACA+AGG | + | chr2_3:35835941-35835960 | None:intergenic | 25.0% |
| ! | CTGTCTAATGTTAGTTAATT+TGG | + | chr2_3:35836037-35836056 | None:intergenic | 25.0% |
| !! | CAAAAATGATTTGCAATTGT+TGG | - | chr2_3:35836064-35836083 | Msa0289630:intron | 25.0% |
| !!! | ATTATTTTGAGACGTAACAT+AGG | - | chr2_3:35836133-35836152 | Msa0289630:intron | 25.0% |
| !!! | TTATTTTGAGACGTAACATA+GGG | - | chr2_3:35836134-35836153 | Msa0289630:intron | 25.0% |
| !!! | TCTAACACCTAAGTTATTTT+TGG | + | chr2_3:35836172-35836191 | None:intergenic | 25.0% |
| ! | AAAAGAAAAAGCAGAGTTAA+AGG | + | chr2_3:35836523-35836542 | None:intergenic | 25.0% |
| !!! | GCATTAAAGTGTTGAATTTT+AGG | + | chr2_3:35836571-35836590 | None:intergenic | 25.0% |
| !! | TTCTTTTATCTTGGCTAATT+TGG | + | chr2_3:35836596-35836615 | None:intergenic | 25.0% |
| !! | ACTTGTGTTTTCTTTTATCT+TGG | + | chr2_3:35836605-35836624 | None:intergenic | 25.0% |
| ! | ATATAGCTACTAAGTTTCTA+TGG | - | chr2_3:35836852-35836871 | Msa0289630:intron | 25.0% |
| ! | AGGAAATATTTGTTCATGAA+AGG | - | chr2_3:35837154-35837173 | Msa0289630:CDS | 25.0% |
| ! | TTCCAAACAATTGAATTAGT+TGG | + | chr2_3:35837225-35837244 | None:intergenic | 25.0% |
| !! | TATAGAAGAATTTTCACCAT+AGG | - | chr2_3:35837247-35837266 | Msa0289630:intron | 25.0% |
| !! | CATCATCTATCTTATTTGTA+TGG | + | chr2_3:35837279-35837298 | None:intergenic | 25.0% |
| AGAATCAAATGTGCAGAAAT+TGG | - | chr2_3:35834599-35834618 | Msa0289630:CDS | 30.0% | |
| GAATCAAATGTGCAGAAATT+GGG | - | chr2_3:35834600-35834619 | Msa0289630:CDS | 30.0% | |
| TTGTTGATGTGGATAATGTT+GGG | - | chr2_3:35834732-35834751 | Msa0289630:CDS | 30.0% | |
| ATGGTTCAATTAGATTGAAC+CGG | + | chr2_3:35834994-35835013 | None:intergenic | 30.0% | |
| ACAATGATATATCTGGATCA+TGG | + | chr2_3:35835013-35835032 | None:intergenic | 30.0% | |
| CAATGCCTTAATTACTTGAT+AGG | + | chr2_3:35835043-35835062 | None:intergenic | 30.0% | |
| !! | TTTTCATTGGCTATTGGTTA+TGG | - | chr2_3:35835232-35835251 | Msa0289630:intron | 30.0% |
| ATCATAACTTTGATCTTCCT+AGG | + | chr2_3:35835561-35835580 | None:intergenic | 30.0% | |
| ATTTCAACTCTACAGAGAAA+AGG | - | chr2_3:35835827-35835846 | Msa0289630:intron | 30.0% | |
| ! | GTTGTGTTATTCATTGATCA+TGG | - | chr2_3:35835994-35836013 | Msa0289630:intron | 30.0% |
| ! | GATTTGCAATTGTTGGTTAT+TGG | - | chr2_3:35836071-35836090 | Msa0289630:intron | 30.0% |
| !!! | TATTTTGAGACGTAACATAG+GGG | - | chr2_3:35836135-35836154 | Msa0289630:intron | 30.0% |
| AACCTGTCCAAAAATAACTT+AGG | - | chr2_3:35836162-35836181 | Msa0289630:intron | 30.0% | |
| TACATTATTCAAGTCAACCA+TGG | - | chr2_3:35836412-35836431 | Msa0289630:intron | 30.0% | |
| !! | ATGGAAGAAAGTATCAAGTT+GGG | + | chr2_3:35836493-35836512 | None:intergenic | 30.0% |
| TTAGGCTATTTATAGAGTCA+TGG | + | chr2_3:35836553-35836572 | None:intergenic | 30.0% | |
| ATCAAGGTCAGAAAGATTAA+GGG | + | chr2_3:35836738-35836757 | None:intergenic | 30.0% | |
| !! | ATGTTCTAGGCTCTAAATAT+TGG | - | chr2_3:35836975-35836994 | Msa0289630:CDS | 30.0% |
| !! | TGTTCTAGGCTCTAAATATT+GGG | - | chr2_3:35836976-35836995 | Msa0289630:CDS | 30.0% |
| ! | TTAGTTGATGTGGAAAATGT+TGG | - | chr2_3:35837082-35837101 | Msa0289630:CDS | 30.0% |
| ! | TAGTTGATGTGGAAAATGTT+GGG | - | chr2_3:35837083-35837102 | Msa0289630:CDS | 30.0% |
| CTCCAACTAATTCAATTGTT+TGG | - | chr2_3:35837220-35837239 | Msa0289630:intron | 30.0% | |
| !!! | ATTTGTATGGTTTTGTCCTA+TGG | + | chr2_3:35837266-35837285 | None:intergenic | 30.0% |
| ! | AATAATAGGTGTCATAGAGA+TGG | + | chr2_3:35837308-35837327 | None:intergenic | 30.0% |
| TGCCATAATGATCATGCTAT+TGG | - | chr2_3:35834536-35834555 | Msa0289630:CDS | 35.0% | |
| GCCATAATGATCATGCTATT+GGG | - | chr2_3:35834537-35834556 | Msa0289630:CDS | 35.0% | |
| ACCCAATAGCATGATCATTA+TGG | + | chr2_3:35834541-35834560 | None:intergenic | 35.0% | |
| !! | ATGTTCTAGGCTCTAAATAC+TGG | - | chr2_3:35834624-35834643 | Msa0289630:CDS | 35.0% |
| !! | TGTTCTAGGCTCTAAATACT+GGG | - | chr2_3:35834625-35834644 | Msa0289630:CDS | 35.0% |
| TGCTGTGAAACAAATGGTTA+AGG | - | chr2_3:35834667-35834686 | Msa0289630:CDS | 35.0% | |
| CTTGTTGATGTGGATAATGT+TGG | - | chr2_3:35834731-35834750 | Msa0289630:CDS | 35.0% | |
| ! | TGAGAAAGTTGGTTTCCAAA+AGG | - | chr2_3:35834769-35834788 | Msa0289630:CDS | 35.0% |
| ! | AAAGTTGGTTTCCAAAAGGA+GGG | - | chr2_3:35834773-35834792 | Msa0289630:CDS | 35.0% |
| !! | GGCATTGATTTAGATCTATG+AGG | - | chr2_3:35835056-35835075 | Msa0289630:CDS | 35.0% |
| TACATTTGAACATGCATCCT+AGG | - | chr2_3:35835541-35835560 | Msa0289630:intron | 35.0% | |
| !! | AACAGGCACTGAATTTGTTT+CGG | + | chr2_3:35835729-35835748 | None:intergenic | 35.0% |
| CAATTAGACGAGTTGTAAAC+AGG | + | chr2_3:35835746-35835765 | None:intergenic | 35.0% | |
| ! | CTCGTCTAATTGTTGCTTAT+CGG | - | chr2_3:35835754-35835773 | Msa0289630:intron | 35.0% |
| AACTCTACAGAGAAAAGGAA+TGG | - | chr2_3:35835832-35835851 | Msa0289630:intron | 35.0% | |
| ACTCTACAGAGAAAAGGAAT+GGG | - | chr2_3:35835833-35835852 | Msa0289630:intron | 35.0% | |
| ! | GTGTTTTTCATGAACAAGGT+GGG | + | chr2_3:35835937-35835956 | None:intergenic | 35.0% |
| ! | AGTGTTTTTCATGAACAAGG+TGG | + | chr2_3:35835938-35835957 | None:intergenic | 35.0% |
| !!! | CACCTAAGTTATTTTTGGAC+AGG | + | chr2_3:35836167-35836186 | None:intergenic | 35.0% |
| TTCATGTATGTGAGCTTCAT+AGG | - | chr2_3:35836373-35836392 | Msa0289630:intron | 35.0% | |
| AAGCAAGAAAAGGGAAGTAA+GGG | + | chr2_3:35836467-35836486 | None:intergenic | 35.0% | |
| !! | CATGGAAGAAAGTATCAAGT+TGG | + | chr2_3:35836494-35836513 | None:intergenic | 35.0% |
| !! | GAAAGAAACAAGTGTTGAGA+TGG | - | chr2_3:35836640-35836659 | Msa0289630:intron | 35.0% |
| TCAAGGTCAGAAAGATTAAG+GGG | + | chr2_3:35836737-35836756 | None:intergenic | 35.0% | |
| CATCAAGGTCAGAAAGATTA+AGG | + | chr2_3:35836739-35836758 | None:intergenic | 35.0% | |
| ATGGACAACTGATGAAAAAG+TGG | - | chr2_3:35836769-35836788 | Msa0289630:intron | 35.0% | |
| TTGTTCCTTGATTTATCACC+AGG | + | chr2_3:35836938-35836957 | None:intergenic | 35.0% | |
| !! | GTTCTAGGCTCTAAATATTG+GGG | - | chr2_3:35836977-35836996 | Msa0289630:CDS | 35.0% |
| ! | GCTCTAAATATTGGGGTAAA+GGG | - | chr2_3:35836984-35837003 | Msa0289630:CDS | 35.0% |
| CTCTAAATATTGGGGTAAAG+GGG | - | chr2_3:35836985-35837004 | Msa0289630:CDS | 35.0% | |
| TGTTGTGAAACAAGTGGTTA+AGG | - | chr2_3:35837018-35837037 | Msa0289630:CDS | 35.0% | |
| ATTCTGTGAGTTGTCTTACT+TGG | - | chr2_3:35837045-35837064 | Msa0289630:CDS | 35.0% | |
| ! | AAAGCTGGTTTCCAAAAAGA+GGG | - | chr2_3:35837124-35837143 | Msa0289630:CDS | 35.0% |
| GCAGAAATTGGGTATGTTCT+AGG | - | chr2_3:35834611-35834630 | Msa0289630:CDS | 40.0% | |
| !! | GTTCTAGGCTCTAAATACTG+GGG | - | chr2_3:35834626-35834645 | Msa0289630:CDS | 40.0% |
| ! | GCTCTAAATACTGGGGTAAA+GGG | - | chr2_3:35834633-35834652 | Msa0289630:CDS | 40.0% |
| CATTTGTTTCACAGCAAACG+TGG | + | chr2_3:35834663-35834682 | None:intergenic | 40.0% | |
| !! | CACGTTTGCTGTGAAACAAA+TGG | - | chr2_3:35834661-35834680 | Msa0289630:CDS | 40.0% |
| !! | CAAAGAGTGCTTGAGAAAGT+TGG | - | chr2_3:35834758-35834777 | Msa0289630:CDS | 40.0% |
| ! | GAAAGTTGGTTTCCAAAAGG+AGG | - | chr2_3:35834772-35834791 | Msa0289630:CDS | 40.0% |
| ! | TGCTTATAATTTGGGACGGA+GGG | + | chr2_3:35835111-35835130 | None:intergenic | 40.0% |
| ! | TTGCTTATAATTTGGGACGG+AGG | + | chr2_3:35835112-35835131 | None:intergenic | 40.0% |
| TTGCTTATATTATGGGACGG+AGG | - | chr2_3:35835386-35835405 | Msa0289630:intron | 40.0% | |
| TGCTTATATTATGGGACGGA+GGG | - | chr2_3:35835387-35835406 | Msa0289630:intron | 40.0% | |
| ATGGGTTTGTAATTGAGACC+AGG | - | chr2_3:35835851-35835870 | Msa0289630:intron | 40.0% | |
| TGGGTTTGTAATTGAGACCA+GGG | - | chr2_3:35835852-35835871 | Msa0289630:intron | 40.0% | |
| ATGGTCTCAATTACAAACCC+TGG | + | chr2_3:35835872-35835891 | None:intergenic | 40.0% | |
| GTATGTGAGCTTCATAGGTT+TGG | - | chr2_3:35836378-35836397 | Msa0289630:intron | 40.0% | |
| TTATTCAAGTCAACCATGGC+AGG | - | chr2_3:35836416-35836435 | Msa0289630:intron | 40.0% | |
| AAGGGAAGTAAGGGATTTCA+AGG | + | chr2_3:35836458-35836477 | None:intergenic | 40.0% | |
| CAAGCAAGAAAAGGGAAGTA+AGG | + | chr2_3:35836468-35836487 | None:intergenic | 40.0% | |
| GTTGGGATCAAGCAAGAAAA+GGG | + | chr2_3:35836476-35836495 | None:intergenic | 40.0% | |
| AGTTGGGATCAAGCAAGAAA+AGG | + | chr2_3:35836477-35836496 | None:intergenic | 40.0% | |
| CAGAGTTAAAGGAAGTTGCA+TGG | + | chr2_3:35836512-35836531 | None:intergenic | 40.0% | |
| ATTCTCTCTTCTTTGTCACG+TGG | + | chr2_3:35836689-35836708 | None:intergenic | 40.0% | |
| ! | TTCTGACCTTGATGATCTCA+TGG | - | chr2_3:35836745-35836764 | Msa0289630:intron | 40.0% |
| ! | ACCTTGATGATCTCATGGTA+TGG | - | chr2_3:35836750-35836769 | Msa0289630:intron | 40.0% |
| TCCATACCATGAGATCATCA+AGG | + | chr2_3:35836754-35836773 | None:intergenic | 40.0% | |
| TGCATCAATGATCGTGCAAT+TGG | - | chr2_3:35836887-35836906 | Msa0289630:intron | 40.0% | |
| GCATCAATGATCGTGCAATT+GGG | - | chr2_3:35836888-35836907 | Msa0289630:intron | 40.0% | |
| TTTATCACCAGGTCAACTTG+AGG | + | chr2_3:35836927-35836946 | None:intergenic | 40.0% | |
| GTTGACCTGGTGATAAATCA+AGG | - | chr2_3:35836930-35836949 | Msa0289630:intron | 40.0% | |
| AGGAACAAATGTGCAGAACT+TGG | - | chr2_3:35836950-35836969 | Msa0289630:intron | 40.0% | |
| !! | GGCTCTAAATATTGGGGTAA+AGG | - | chr2_3:35836983-35837002 | Msa0289630:CDS | 40.0% |
| GTGAGTTGTCTTACTTGGAA+AGG | - | chr2_3:35837050-35837069 | Msa0289630:CDS | 40.0% | |
| ! | GCTTGAAGCTTTAGTTGATG+TGG | - | chr2_3:35837072-35837091 | Msa0289630:CDS | 40.0% |
| ! | TGTTGGGTCTCAAAGAGTTT+TGG | - | chr2_3:35837099-35837118 | Msa0289630:CDS | 40.0% |
| !!! | CAAAGAGTTTTGGAGAAAGC+TGG | - | chr2_3:35837109-35837128 | Msa0289630:CDS | 40.0% |
| ! | GAAAGCTGGTTTCCAAAAAG+AGG | - | chr2_3:35837123-35837142 | Msa0289630:CDS | 40.0% |
| TCCAAAAAGAGGGAGTTCTA+AGG | - | chr2_3:35837134-35837153 | Msa0289630:CDS | 40.0% | |
| ! | TCCTTAGAACTCCCTCTTTT+TGG | + | chr2_3:35837138-35837157 | None:intergenic | 40.0% |
| CCATACCAAAAACGGAGTGA+TGG | + | chr2_3:35834472-35834491 | None:intergenic | 45.0% | |
| !!! | CCATCACTCCGTTTTTGGTA+TGG | - | chr2_3:35834469-35834488 | Msa0289630:CDS | 45.0% |
| !! | GGCTCTAAATACTGGGGTAA+AGG | - | chr2_3:35834632-35834651 | Msa0289630:CDS | 45.0% |
| GCTTGAAGCTCTTGTTGATG+TGG | - | chr2_3:35834721-35834740 | Msa0289630:CDS | 45.0% | |
| TCCAAAAGGAGGGAGTTCTT+AGG | - | chr2_3:35834783-35834802 | Msa0289630:CDS | 45.0% | |
| ! | TCCTAAGAACTCCCTCCTTT+TGG | + | chr2_3:35834787-35834806 | None:intergenic | 45.0% |
| CTCTTCTTTGTCACGTGGTT+TGG | + | chr2_3:35836684-35836703 | None:intergenic | 45.0% | |
| GGTCAGAAAGATTAAGGGGT+CGG | + | chr2_3:35836733-35836752 | None:intergenic | 45.0% | |
| !! | TCTCTATCCTCAAGTTGACC+TGG | - | chr2_3:35836917-35836936 | Msa0289630:intron | 45.0% |
| GCAGAACTTGGCTATGTTCT+AGG | - | chr2_3:35836962-35836981 | Msa0289630:intron | 45.0% | |
| CACTTGTTTCACAACACACG+TGG | + | chr2_3:35837014-35837033 | None:intergenic | 45.0% | |
| CACGTGTGTTGTGAAACAAG+TGG | - | chr2_3:35837012-35837031 | Msa0289630:CDS | 45.0% | |
| ! | ACACGCCATCACTCCGTTTT+TGG | - | chr2_3:35834464-35834483 | Msa0289630:CDS | 50.0% |
| AAGGGGTCGGAGTGTGATTT+GGG | + | chr2_3:35836720-35836739 | None:intergenic | 50.0% | |
| TAAGGGGTCGGAGTGTGATT+TGG | + | chr2_3:35836721-35836740 | None:intergenic | 50.0% | |
| AAGTGGCCAAGTTCTGCTCT+TGG | - | chr2_3:35836786-35836805 | Msa0289630:intron | 50.0% | |
| AGTGGCCAAGTTCTGCTCTT+GGG | - | chr2_3:35836787-35836806 | Msa0289630:intron | 50.0% | |
| GAGTTCCCAAGAGCAGAACT+TGG | + | chr2_3:35836795-35836814 | None:intergenic | 50.0% | |
| GTTGATGCCATCATCCTTGC+TGG | + | chr2_3:35836822-35836841 | None:intergenic | 50.0% | |
| CTTCATGTCTCTGCCTGCCA+TGG | + | chr2_3:35836432-35836451 | None:intergenic | 55.0% | |
| TTGGGAACTCTACGCCAGCA+AGG | - | chr2_3:35836805-35836824 | Msa0289630:intron | 55.0% | |
| CTCTACGCCAGCAAGGATGA+TGG | - | chr2_3:35836812-35836831 | Msa0289630:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 35834444 | 35837330 | 35834444 | ID=Msa0289630;Name=Msa0289630 |
| chr2_3 | mRNA | 35834444 | 35837330 | 35834444 | ID=Msa0289630-mRNA-1;Parent=Msa0289630;Name=Msa0289630-mRNA-1;_AED=0.16;_eAED=0.20;_QI=0|0|0|1|0.33|0.25|4|0|302 |
| chr2_3 | exon | 35837289 | 35837330 | 35837289 | ID=Msa0289630-mRNA-1:exon:11752;Parent=Msa0289630-mRNA-1 |
| chr2_3 | exon | 35836963 | 35837205 | 35836963 | ID=Msa0289630-mRNA-1:exon:11751;Parent=Msa0289630-mRNA-1 |
| chr2_3 | exon | 35834865 | 35835109 | 35834865 | ID=Msa0289630-mRNA-1:exon:11750;Parent=Msa0289630-mRNA-1 |
| chr2_3 | exon | 35834444 | 35834822 | 35834444 | ID=Msa0289630-mRNA-1:exon:11749;Parent=Msa0289630-mRNA-1 |
| chr2_3 | CDS | 35837289 | 35837330 | 35837289 | ID=Msa0289630-mRNA-1:cds;Parent=Msa0289630-mRNA-1 |
| chr2_3 | CDS | 35836963 | 35837205 | 35836963 | ID=Msa0289630-mRNA-1:cds;Parent=Msa0289630-mRNA-1 |
| chr2_3 | CDS | 35834865 | 35835109 | 35834865 | ID=Msa0289630-mRNA-1:cds;Parent=Msa0289630-mRNA-1 |
| chr2_3 | CDS | 35834444 | 35834822 | 35834444 | ID=Msa0289630-mRNA-1:cds;Parent=Msa0289630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
