AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0289790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289790 MtrunA17_Chr1g0203051 37.008 381 179 3 46 365 19 399 9.48e-83 264
Msa0289790 MtrunA17_Chr2g0287651 33.233 331 159 2 96 364 66 396 2.17e-57 200
Msa0289790 MtrunA17_Chr5g0448761 30.368 326 161 5 103 362 58 383 7.27e-41 153
Msa0289790 MtrunA17_Chr2g0287061 30.719 306 142 9 110 369 188 469 2.17e-33 131
Msa0289790 MtrunA17_Chr6g0458391 28.485 330 178 10 89 367 207 529 1.10e-31 126
Msa0289790 MtrunA17_Chr5g0431001 26.480 321 164 7 116 365 72 391 1.17e-29 119
Msa0289790 MtrunA17_Chr2g0331371 48.387 124 64 0 86 209 36 159 1.21e-29 113
Msa0289790 MtrunA17_Chr2g0276841 26.814 317 165 8 111 361 76 391 2.51e-29 119
Msa0289790 MtrunA17_Chr1g0203721 28.025 314 160 8 115 364 73 384 1.07e-28 117
Msa0289790 MtrunA17_Chr3g0082121 28.526 312 161 8 110 364 48 354 1.11e-27 114
Msa0289790 MtrunA17_Chr1g0171741 35.882 170 108 1 60 229 88 256 1.65e-27 109
Msa0289790 MtrunA17_Chr8g0389811 39.695 131 79 0 86 216 65 195 2.48e-27 107
Msa0289790 MtrunA17_Chr1g0198761 27.246 334 166 10 103 361 42 373 5.30e-27 112
Msa0289790 MtrunA17_Chr2g0324011 25.705 319 170 5 111 366 16 330 8.12e-27 111
Msa0289790 MtrunA17_Chr3g0080351 24.931 361 211 8 55 365 35 385 1.35e-26 111
Msa0289790 MtrunA17_Chr2g0296781 47.423 97 51 0 266 362 213 309 1.78e-25 108
Msa0289790 MtrunA17_Chr2g0329031 26.061 330 178 8 96 367 5 326 3.39e-25 107
Msa0289790 MtrunA17_Chr5g0441581 25.079 315 165 8 102 362 40 337 6.63e-25 106
Msa0289790 MtrunA17_Chr6g0477261 45.361 97 53 0 266 362 102 198 2.37e-24 104
Msa0289790 MtrunA17_Chr1g0202341 41.880 117 67 1 254 370 259 374 5.68e-24 103
Msa0289790 MtrunA17_Chr2g0294841 26.462 325 167 10 111 365 51 373 1.24e-23 102
Msa0289790 MtrunA17_Chr8g0363841 25.962 312 163 6 117 364 29 336 1.71e-23 102
Msa0289790 MtrunA17_Chr5g0448511 34.862 109 71 0 254 362 47 155 3.00e-23 101
Msa0289790 MtrunA17_Chr6g0473421 44.792 96 53 0 86 181 36 131 8.18e-23 93.6
Msa0289790 MtrunA17_Chr1g0207551 25.397 315 168 6 110 362 39 348 2.50e-22 99.0
Msa0289790 MtrunA17_Chr1g0164591 43.119 109 62 0 256 364 126 234 5.34e-22 95.5
Msa0289790 MtrunA17_Chr1g0196541 44.330 97 54 0 266 362 213 309 1.27e-21 96.7
Msa0289790 MtrunA17_Chr1g0172931 39.806 103 62 0 85 187 56 158 1.35e-20 87.4
Msa0289790 MtrunA17_Chr5g0440451 28.205 156 100 1 219 362 209 364 5.44e-20 92.0
Msa0289790 MtrunA17_Chr2g0291591 34.127 126 82 1 238 363 253 377 2.69e-19 89.4
Msa0289790 MtrunA17_Chr3g0118611 27.517 149 96 1 231 367 118 266 5.51e-19 88.6
Msa0289790 MtrunA17_Chr2g0291581 35.000 100 65 0 254 353 265 364 2.39e-16 80.5
Msa0289790 MtrunA17_Chr2g0290391 31.313 99 68 0 267 365 286 384 1.64e-11 65.9
Msa0289790 MtrunA17_Chr2g0290391 35.398 113 70 2 117 227 63 174 6.31e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289790 AT4G38180.1 30.368 326 160 7 103 362 68 392 4.55e-37 142
Msa0289790 AT3G06250.2 28.283 297 159 7 110 369 195 474 1.22e-31 126
Msa0289790 AT3G06250.1 28.283 297 159 7 110 369 195 474 1.22e-31 126
Msa0289790 AT3G06250.3 28.283 297 159 7 110 369 195 474 1.22e-31 126
Msa0289790 AT1G10240.2 28.076 317 161 8 111 361 54 369 3.73e-29 119
Msa0289790 AT1G10240.1 28.076 317 161 8 111 361 54 369 3.73e-29 119
Msa0289790 AT5G18960.2 27.667 300 160 7 110 369 216 498 6.19e-29 119
Msa0289790 AT5G18960.1 27.667 300 160 7 110 369 216 498 6.19e-29 119
Msa0289790 AT1G76320.1 26.433 314 168 6 110 366 2 309 3.08e-23 102
Msa0289790 AT1G76320.4 26.433 314 168 6 110 366 2 309 3.08e-23 102
Msa0289790 AT1G76320.2 26.433 314 168 6 110 366 2 309 3.13e-23 102
Msa0289790 AT1G76320.3 26.433 314 168 6 110 366 2 309 3.83e-23 101
Msa0289790 AT3G22170.2 24.533 375 224 9 46 365 10 380 5.94e-23 101
Msa0289790 AT3G22170.1 24.533 375 224 9 46 365 10 380 5.94e-23 101
Msa0289790 AT2G32250.5 24.731 279 181 5 110 365 43 315 3.24e-22 99.0
Msa0289790 AT2G32250.6 24.731 279 181 5 110 365 43 315 3.60e-22 99.0
Msa0289790 AT2G32250.1 24.731 279 181 5 110 365 43 315 3.60e-22 99.0
Msa0289790 AT2G32250.3 24.731 279 181 5 110 365 43 315 3.60e-22 99.0
Msa0289790 AT2G32250.8 24.731 279 181 5 110 365 2 274 3.66e-22 98.6
Msa0289790 AT2G32250.7 24.731 279 181 5 110 365 2 274 3.91e-22 98.6
Msa0289790 AT2G32250.2 24.731 279 181 5 110 365 43 315 4.02e-22 98.6
Msa0289790 AT2G32250.4 24.731 279 181 5 110 365 43 315 4.02e-22 98.6
Msa0289790 AT5G28530.5 27.481 262 178 5 111 361 61 321 5.81e-22 97.8
Msa0289790 AT5G28530.4 27.481 262 178 5 111 361 61 321 6.01e-22 97.8
Msa0289790 AT1G52520.1 25.566 309 165 9 110 362 90 389 9.81e-22 97.4
Msa0289790 AT2G27110.2 23.377 308 169 5 110 367 54 344 1.08e-21 97.4
Msa0289790 AT2G27110.1 23.377 308 169 5 110 367 54 344 1.08e-21 97.4
Msa0289790 AT4G15090.1 24.437 311 169 6 115 362 61 368 2.96e-21 95.9
Msa0289790 AT4G15090.5 24.437 311 169 6 115 362 61 368 2.96e-21 95.9
Msa0289790 AT4G15090.3 24.437 311 169 6 115 362 61 368 2.96e-21 95.9
Msa0289790 AT4G15090.2 24.437 311 169 6 115 362 61 368 2.96e-21 95.9
Msa0289790 AT4G15090.4 24.437 311 169 6 115 362 61 368 2.96e-21 95.9
Msa0289790 AT2G27110.3 28.846 156 99 1 224 367 44 199 4.07e-21 95.5
Msa0289790 AT1G80010.1 38.889 126 76 1 238 363 291 415 7.52e-21 94.7
Msa0289790 AT5G28530.1 26.769 325 163 12 111 361 61 384 2.71e-19 90.1
Msa0289790 AT5G28530.3 26.769 325 163 12 111 361 61 384 3.02e-19 89.7
Msa0289790 AT5G28530.2 26.769 325 163 12 111 361 61 384 3.02e-19 89.7
Msa0289790 AT4G19990.7 26.280 293 178 9 107 361 37 329 1.08e-18 88.2
Msa0289790 AT4G19990.3 26.280 293 178 9 107 361 23 315 1.21e-18 88.2
Msa0289790 AT4G19990.4 26.280 293 178 9 107 361 23 315 1.21e-18 88.2
Msa0289790 AT4G19990.5 26.280 293 178 9 107 361 23 315 1.26e-18 88.2
Msa0289790 AT4G19990.6 26.280 293 178 9 107 361 23 315 1.38e-18 87.8
Msa0289790 AT4G19990.2 26.280 293 178 9 107 361 23 315 1.38e-18 87.8
Msa0289790 AT4G38170.1 35.644 101 64 1 256 355 50 150 2.29e-17 84.0
Msa0289790 AT4G19990.1 25.781 256 153 8 143 361 3 258 1.29e-15 79.0

Find 60 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTGGAGTGTTTGTTATT+TGG 0.226965 2_3:-36072760 Msa0289790:CDS
TGGCCGTTTGTTGTGTTTCT+TGG 0.247396 2_3:-36072691 Msa0289790:CDS
TCAAGGCATTGGTATGTTAC+TGG 0.272027 2_3:-36072964 Msa0289790:CDS
ATCCTTTGTTTGTGAATGTT+TGG 0.302405 2_3:-36073538 Msa0289790:CDS
TCTTGGTTTGCTAGAATGTC+TGG 0.309748 2_3:-36073174 Msa0289790:CDS
GCCTTGACAAAATATCTAAA+TGG 0.312124 2_3:+36072980 None:intergenic
CACAATCTGTGATGGGTTGC+AGG 0.322966 2_3:+36072493 None:intergenic
CGCAAACATACGAGGGTCTT+TGG 0.327926 2_3:+36072807 None:intergenic
AAGGTATGAGTTTGTTAGGT+TGG 0.331013 2_3:-36073217 Msa0289790:CDS
GGCCGTTTGTTGTGTTTCTT+GGG 0.333114 2_3:-36072690 Msa0289790:CDS
TTTGTTCATGTCAAGGATAC+AGG 0.344834 2_3:-36073086 Msa0289790:CDS
TTCGTAAGAGGCAAGTTGTT+AGG 0.349124 2_3:-36073143 Msa0289790:CDS
TGGAAAGGTATGAGTTTGTT+AGG 0.350127 2_3:-36073221 Msa0289790:CDS
GGAGGATAGGGGACTAACTA+TGG 0.358554 2_3:-36073064 Msa0289790:CDS
TCCGATTGTTATAAAAGATA+TGG 0.376282 2_3:-36073289 Msa0289790:CDS
TCCTTTGTTTGTGAATGTTT+GGG 0.386636 2_3:-36073537 Msa0289790:CDS
CCTTGATTCATATAAAATAT+AGG 0.388495 2_3:-36073595 Msa0289790:CDS
TCAAGGATACAGGGAGGATA+GGG 0.394949 2_3:-36073076 Msa0289790:CDS
CCCATCACAGATTGTGTGCT+TGG 0.415583 2_3:-36072486 Msa0289790:CDS
TTGCGACTGGCATAGTAATA+CGG 0.422862 2_3:-36072639 Msa0289790:CDS
CCATCAGTTATAACGGATAA+AGG 0.426634 2_3:+36072553 None:intergenic
AGAAACAAATGCATGGTTGT+TGG 0.446659 2_3:-36072608 Msa0289790:CDS
GTATGAGTTTGTTAGGTTGG+AGG 0.458750 2_3:-36073214 Msa0289790:CDS
TCGTAAGAGGCAAGTTGTTA+GGG 0.461755 2_3:-36073142 Msa0289790:CDS
GCTTACCATTCATTGCAATC+AGG 0.467383 2_3:+36072578 None:intergenic
TTTCTGATATGTTGCATCAA+AGG 0.475846 2_3:+36072726 None:intergenic
GATCACAATCATGATTTGCT+TGG 0.489117 2_3:-36072931 Msa0289790:CDS
ACCCCAAGAAACACAACAAA+CGG 0.490549 2_3:+36072688 None:intergenic
TGCGACTGGCATAGTAATAC+GGG 0.495275 2_3:-36072638 Msa0289790:CDS
TGCTTTGTGTGGATTGCTAC+CGG 0.498827 2_3:-36072905 Msa0289790:CDS
CCTTTATCCGTTATAACTGA+TGG 0.499846 2_3:-36072553 Msa0289790:CDS
CAATTCCTGATTGCAATGAA+TGG 0.503345 2_3:-36072583 Msa0289790:CDS
CACAATCATGATTTGCTTGG+TGG 0.504500 2_3:-36072928 Msa0289790:CDS
TAATGGAATATTTCATTGCA+AGG 0.505383 2_3:+36072527 None:intergenic
GTCAAGGATACAGGGAGGAT+AGG 0.518923 2_3:-36073077 Msa0289790:CDS
GAATGCATCAAGACAACACT+TGG 0.538588 2_3:-36072452 Msa0289790:CDS
CTTAACTGCACCACATGCAT+CGG 0.540821 2_3:+36072849 None:intergenic
GGATTTAGGAGAGGAAAGTA+CGG 0.541052 2_3:-36073423 Msa0289790:intron
TTGCTTGGTGGTGCTTTGTG+TGG 0.542188 2_3:-36072916 Msa0289790:CDS
TCCCAAACATTCACAAACAA+AGG 0.542836 2_3:+36073536 None:intergenic
AAGGTCACCATCAGTTATAA+CGG 0.550217 2_3:+36072546 None:intergenic
GCCAAGCACACAATCTGTGA+TGG 0.550854 2_3:+36072485 None:intergenic
ATACTTAGATGAACGTTCAC+TGG 0.558982 2_3:-36073370 Msa0289790:CDS
TTGTTCATGTCAAGGATACA+GGG 0.566377 2_3:-36073085 Msa0289790:CDS
TTTGTTTAGATGATGTGGAA+AGG 0.567827 2_3:-36073236 Msa0289790:CDS
TATAGGTATTCAAGCATGCA+AGG 0.570599 2_3:-36073578 Msa0289790:CDS
GATTTAGGAGAGGAAAGTAC+GGG 0.571151 2_3:-36073422 Msa0289790:intron
AAACCAAGAGTAAAACATGT+AGG 0.581375 2_3:+36073188 None:intergenic
ACAATCTGTGATGGGTTGCA+GGG 0.584152 2_3:+36072494 None:intergenic
CAAGGATACAGGGAGGATAG+GGG 0.631155 2_3:-36073075 Msa0289790:CDS
CCAAGCACACAATCTGTGAT+GGG 0.632438 2_3:+36072486 None:intergenic
GCCGTTTGTTGTGTTTCTTG+GGG 0.636477 2_3:-36072689 Msa0289790:CDS
TAGTGTCTCGCAAACATACG+AGG 0.640794 2_3:+36072799 None:intergenic
AGACTAAAGAAACAAATGCA+TGG 0.649044 2_3:-36072615 Msa0289790:CDS
TCAGTTATAACGGATAAAGG+AGG 0.696052 2_3:+36072556 None:intergenic
ATTTAGGAGAGGAAAGTACG+GGG 0.710087 2_3:-36073421 Msa0289790:intron
AGTGTCTCGCAAACATACGA+GGG 0.729655 2_3:+36072800 None:intergenic
CAAGTTGTTAGGGATCACAA+AGG 0.736584 2_3:-36073132 Msa0289790:CDS
TTCATGTCAAGGATACAGGG+AGG 0.738300 2_3:-36073082 Msa0289790:CDS
TTTAGGAGAGGAAAGTACGG+GGG 0.775693 2_3:-36073420 Msa0289790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCTATATTTTATATGAATCA+AGG + chr2_3:36072478-36072497 None:intergenic 20.0%
!! CCTTGATTCATATAAAATAT+AGG - chr2_3:36072475-36072494 Msa0289790:CDS 20.0%
!! TTAAAAGATTATCTTGTTAC+AGG - chr2_3:36072626-36072645 Msa0289790:CDS 20.0%
!!! CCTATATTTTATATGAATCA+AGG + chr2_3:36072478-36072497 None:intergenic 20.0%
!! CCTTGATTCATATAAAATAT+AGG - chr2_3:36072475-36072494 Msa0289790:CDS 20.0%
!! TTAAAAGATTATCTTGTTAC+AGG - chr2_3:36072626-36072645 Msa0289790:CDS 20.0%
! ATTATCTTGTTACAGGATTT+AGG - chr2_3:36072633-36072652 Msa0289790:CDS 25.0%
!!! TGAAGATGTACATGTTTTTT+CGG - chr2_3:36072733-36072752 Msa0289790:CDS 25.0%
! TCCGATTGTTATAAAAGATA+TGG - chr2_3:36072781-36072800 Msa0289790:CDS 25.0%
!! GCCATATCTTTTATAACAAT+CGG + chr2_3:36072785-36072804 None:intergenic 25.0%
!!! AAACTTTTGTTTAGATGATG+TGG - chr2_3:36072829-36072848 Msa0289790:CDS 25.0%
! GAAAAATTGAAACAAGATGT+GGG - chr2_3:36073047-36073066 Msa0289790:CDS 25.0%
!! TCCATTTAGATATTTTGTCA+AGG - chr2_3:36073089-36073108 Msa0289790:CDS 25.0%
!!! ACTATTTTGACAATGATATG+AGG - chr2_3:36073290-36073309 Msa0289790:CDS 25.0%
! ATCAGAAAAACAAGTACAAT+TGG - chr2_3:36073359-36073378 Msa0289790:CDS 25.0%
! TAATGGAATATTTCATTGCA+AGG + chr2_3:36073546-36073565 None:intergenic 25.0%
! ATTATCTTGTTACAGGATTT+AGG - chr2_3:36072633-36072652 Msa0289790:CDS 25.0%
!!! TGAAGATGTACATGTTTTTT+CGG - chr2_3:36072733-36072752 Msa0289790:CDS 25.0%
! TCCGATTGTTATAAAAGATA+TGG - chr2_3:36072781-36072800 Msa0289790:CDS 25.0%
!! GCCATATCTTTTATAACAAT+CGG + chr2_3:36072785-36072804 None:intergenic 25.0%
!!! AAACTTTTGTTTAGATGATG+TGG - chr2_3:36072829-36072848 Msa0289790:CDS 25.0%
! GAAAAATTGAAACAAGATGT+GGG - chr2_3:36073047-36073066 Msa0289790:CDS 25.0%
!! TCCATTTAGATATTTTGTCA+AGG - chr2_3:36073089-36073108 Msa0289790:CDS 25.0%
!!! ACTATTTTGACAATGATATG+AGG - chr2_3:36073290-36073309 Msa0289790:CDS 25.0%
! ATCAGAAAAACAAGTACAAT+TGG - chr2_3:36073359-36073378 Msa0289790:CDS 25.0%
! TAATGGAATATTTCATTGCA+AGG + chr2_3:36073546-36073565 None:intergenic 25.0%
! ATCCTTTGTTTGTGAATGTT+TGG - chr2_3:36072532-36072551 Msa0289790:CDS 30.0%
! TCCTTTGTTTGTGAATGTTT+GGG - chr2_3:36072533-36072552 Msa0289790:CDS 30.0%
! TTTCCAATTTTCAAAGCTAC+AGG + chr2_3:36072576-36072595 None:intergenic 30.0%
TTTGTTTAGATGATGTGGAA+AGG - chr2_3:36072834-36072853 Msa0289790:CDS 30.0%
AAACCAAGAGTAAAACATGT+AGG + chr2_3:36072885-36072904 None:intergenic 30.0%
!! ACTTTTGTTTGTTCATGTCA+AGG - chr2_3:36072977-36072996 Msa0289790:CDS 30.0%
CGAAAAATTGAAACAAGATG+TGG - chr2_3:36073046-36073065 Msa0289790:CDS 30.0%
GCCTTGACAAAATATCTAAA+TGG + chr2_3:36073093-36073112 None:intergenic 30.0%
! TAGATATTTTGTCAAGGCAT+TGG - chr2_3:36073095-36073114 Msa0289790:CDS 30.0%
!!! TGAGTCATTTTTCTATATGC+CGG + chr2_3:36073187-36073206 None:intergenic 30.0%
TTTCTGATATGTTGCATCAA+AGG + chr2_3:36073347-36073366 None:intergenic 30.0%
CAAAAACAATGGTCTGATTA+TGG + chr2_3:36073414-36073433 None:intergenic 30.0%
AGACTAAAGAAACAAATGCA+TGG - chr2_3:36073455-36073474 Msa0289790:intron 30.0%
!!! TGCAGGGAAGATTTTTTTAA+TGG + chr2_3:36073563-36073582 None:intergenic 30.0%
! ATCCTTTGTTTGTGAATGTT+TGG - chr2_3:36072532-36072551 Msa0289790:CDS 30.0%
! TCCTTTGTTTGTGAATGTTT+GGG - chr2_3:36072533-36072552 Msa0289790:CDS 30.0%
! TTTCCAATTTTCAAAGCTAC+AGG + chr2_3:36072576-36072595 None:intergenic 30.0%
TTTGTTTAGATGATGTGGAA+AGG - chr2_3:36072834-36072853 Msa0289790:CDS 30.0%
AAACCAAGAGTAAAACATGT+AGG + chr2_3:36072885-36072904 None:intergenic 30.0%
!! ACTTTTGTTTGTTCATGTCA+AGG - chr2_3:36072977-36072996 Msa0289790:CDS 30.0%
CGAAAAATTGAAACAAGATG+TGG - chr2_3:36073046-36073065 Msa0289790:CDS 30.0%
GCCTTGACAAAATATCTAAA+TGG + chr2_3:36073093-36073112 None:intergenic 30.0%
! TAGATATTTTGTCAAGGCAT+TGG - chr2_3:36073095-36073114 Msa0289790:CDS 30.0%
!!! TGAGTCATTTTTCTATATGC+CGG + chr2_3:36073187-36073206 None:intergenic 30.0%
TTTCTGATATGTTGCATCAA+AGG + chr2_3:36073347-36073366 None:intergenic 30.0%
CAAAAACAATGGTCTGATTA+TGG + chr2_3:36073414-36073433 None:intergenic 30.0%
AGACTAAAGAAACAAATGCA+TGG - chr2_3:36073455-36073474 Msa0289790:intron 30.0%
!!! TGCAGGGAAGATTTTTTTAA+TGG + chr2_3:36073563-36073582 None:intergenic 30.0%
TATAGGTATTCAAGCATGCA+AGG - chr2_3:36072492-36072511 Msa0289790:CDS 35.0%
TCCCAAACATTCACAAACAA+AGG + chr2_3:36072537-36072556 None:intergenic 35.0%
!! GTACCTGTAGCTTTGAAAAT+TGG - chr2_3:36072570-36072589 Msa0289790:CDS 35.0%
ATACTTAGATGAACGTTCAC+TGG - chr2_3:36072700-36072719 Msa0289790:CDS 35.0%
!!! GATGTACATGTTTTTTCGGA+TGG - chr2_3:36072737-36072756 Msa0289790:CDS 35.0%
! TGGAAAGGTATGAGTTTGTT+AGG - chr2_3:36072849-36072868 Msa0289790:CDS 35.0%
!! AAGGTATGAGTTTGTTAGGT+TGG - chr2_3:36072853-36072872 Msa0289790:CDS 35.0%
! TTGCCTACATGTTTTACTCT+TGG - chr2_3:36072879-36072898 Msa0289790:CDS 35.0%
TTTGTTCATGTCAAGGATAC+AGG - chr2_3:36072984-36073003 Msa0289790:CDS 35.0%
TTGTTCATGTCAAGGATACA+GGG - chr2_3:36072985-36073004 Msa0289790:CDS 35.0%
! AATTTTTCGCTCGTGCTTTT+GGG + chr2_3:36073035-36073054 None:intergenic 35.0%
!! GATCACAATCATGATTTGCT+TGG - chr2_3:36073139-36073158 Msa0289790:CDS 35.0%
GGCATATAGAAAAATGACTC+AGG - chr2_3:36073186-36073205 Msa0289790:CDS 35.0%
! TTTTGACAATGATATGAGGC+TGG - chr2_3:36073294-36073313 Msa0289790:CDS 35.0%
AGAAACAAATGCATGGTTGT+TGG - chr2_3:36073462-36073481 Msa0289790:intron 35.0%
CAATTCCTGATTGCAATGAA+TGG - chr2_3:36073487-36073506 Msa0289790:intron 35.0%
!! TCAGTTATAACGGATAAAGG+AGG + chr2_3:36073517-36073536 None:intergenic 35.0%
!! CCATCAGTTATAACGGATAA+AGG + chr2_3:36073520-36073539 None:intergenic 35.0%
CCTTTATCCGTTATAACTGA+TGG - chr2_3:36073517-36073536 Msa0289790:intron 35.0%
AAGGTCACCATCAGTTATAA+CGG + chr2_3:36073527-36073546 None:intergenic 35.0%
TATAGGTATTCAAGCATGCA+AGG - chr2_3:36072492-36072511 Msa0289790:CDS 35.0%
TCCCAAACATTCACAAACAA+AGG + chr2_3:36072537-36072556 None:intergenic 35.0%
!! GTACCTGTAGCTTTGAAAAT+TGG - chr2_3:36072570-36072589 Msa0289790:CDS 35.0%
ATACTTAGATGAACGTTCAC+TGG - chr2_3:36072700-36072719 Msa0289790:CDS 35.0%
!!! GATGTACATGTTTTTTCGGA+TGG - chr2_3:36072737-36072756 Msa0289790:CDS 35.0%
! TGGAAAGGTATGAGTTTGTT+AGG - chr2_3:36072849-36072868 Msa0289790:CDS 35.0%
!! AAGGTATGAGTTTGTTAGGT+TGG - chr2_3:36072853-36072872 Msa0289790:CDS 35.0%
! TTGCCTACATGTTTTACTCT+TGG - chr2_3:36072879-36072898 Msa0289790:CDS 35.0%
TTTGTTCATGTCAAGGATAC+AGG - chr2_3:36072984-36073003 Msa0289790:CDS 35.0%
TTGTTCATGTCAAGGATACA+GGG - chr2_3:36072985-36073004 Msa0289790:CDS 35.0%
! AATTTTTCGCTCGTGCTTTT+GGG + chr2_3:36073035-36073054 None:intergenic 35.0%
!! GATCACAATCATGATTTGCT+TGG - chr2_3:36073139-36073158 Msa0289790:CDS 35.0%
GGCATATAGAAAAATGACTC+AGG - chr2_3:36073186-36073205 Msa0289790:CDS 35.0%
! TTTTGACAATGATATGAGGC+TGG - chr2_3:36073294-36073313 Msa0289790:CDS 35.0%
AGAAACAAATGCATGGTTGT+TGG - chr2_3:36073462-36073481 Msa0289790:intron 35.0%
CAATTCCTGATTGCAATGAA+TGG - chr2_3:36073487-36073506 Msa0289790:intron 35.0%
!! TCAGTTATAACGGATAAAGG+AGG + chr2_3:36073517-36073536 None:intergenic 35.0%
!! CCATCAGTTATAACGGATAA+AGG + chr2_3:36073520-36073539 None:intergenic 35.0%
CCTTTATCCGTTATAACTGA+TGG - chr2_3:36073517-36073536 Msa0289790:intron 35.0%
AAGGTCACCATCAGTTATAA+CGG + chr2_3:36073527-36073546 None:intergenic 35.0%
AAGCTACAGGTACTTACACT+TGG + chr2_3:36072563-36072582 None:intergenic 40.0%
CTTGTTACAGGATTTAGGAG+AGG - chr2_3:36072638-36072657 Msa0289790:CDS 40.0%
GGATTTAGGAGAGGAAAGTA+CGG - chr2_3:36072647-36072666 Msa0289790:CDS 40.0%
! GATTTAGGAGAGGAAAGTAC+GGG - chr2_3:36072648-36072667 Msa0289790:CDS 40.0%
! ATTTAGGAGAGGAAAGTACG+GGG - chr2_3:36072649-36072668 Msa0289790:CDS 40.0%
!! GTATGAGTTTGTTAGGTTGG+AGG - chr2_3:36072856-36072875 Msa0289790:CDS 40.0%
!! TCTTGGTTTGCTAGAATGTC+TGG - chr2_3:36072896-36072915 Msa0289790:CDS 40.0%
! CTGGATTTTCAGTTCGTAAG+AGG - chr2_3:36072915-36072934 Msa0289790:CDS 40.0%
TTCGTAAGAGGCAAGTTGTT+AGG - chr2_3:36072927-36072946 Msa0289790:CDS 40.0%
TCGTAAGAGGCAAGTTGTTA+GGG - chr2_3:36072928-36072947 Msa0289790:CDS 40.0%
CAAGTTGTTAGGGATCACAA+AGG - chr2_3:36072938-36072957 Msa0289790:CDS 40.0%
! CAATTTTTCGCTCGTGCTTT+TGG + chr2_3:36073036-36073055 None:intergenic 40.0%
!! TCAAGGCATTGGTATGTTAC+TGG - chr2_3:36073106-36073125 Msa0289790:CDS 40.0%
!! CACAATCATGATTTGCTTGG+TGG - chr2_3:36073142-36073161 Msa0289790:CDS 40.0%
!! AGGCTGGAGTGTTTGTTATT+TGG - chr2_3:36073310-36073329 Msa0289790:CDS 40.0%
ACCCCAAGAAACACAACAAA+CGG + chr2_3:36073385-36073404 None:intergenic 40.0%
TATGCCAGTCGCAAAAACAA+TGG + chr2_3:36073425-36073444 None:intergenic 40.0%
TTGCGACTGGCATAGTAATA+CGG - chr2_3:36073431-36073450 Msa0289790:intron 40.0%
GCTTACCATTCATTGCAATC+AGG + chr2_3:36073495-36073514 None:intergenic 40.0%
GAATGCATCAAGACAACACT+TGG - chr2_3:36073618-36073637 Msa0289790:CDS 40.0%
AAGCTACAGGTACTTACACT+TGG + chr2_3:36072563-36072582 None:intergenic 40.0%
CTTGTTACAGGATTTAGGAG+AGG - chr2_3:36072638-36072657 Msa0289790:CDS 40.0%
GGATTTAGGAGAGGAAAGTA+CGG - chr2_3:36072647-36072666 Msa0289790:CDS 40.0%
! GATTTAGGAGAGGAAAGTAC+GGG - chr2_3:36072648-36072667 Msa0289790:CDS 40.0%
! ATTTAGGAGAGGAAAGTACG+GGG - chr2_3:36072649-36072668 Msa0289790:CDS 40.0%
!! GTATGAGTTTGTTAGGTTGG+AGG - chr2_3:36072856-36072875 Msa0289790:CDS 40.0%
!! TCTTGGTTTGCTAGAATGTC+TGG - chr2_3:36072896-36072915 Msa0289790:CDS 40.0%
! CTGGATTTTCAGTTCGTAAG+AGG - chr2_3:36072915-36072934 Msa0289790:CDS 40.0%
TTCGTAAGAGGCAAGTTGTT+AGG - chr2_3:36072927-36072946 Msa0289790:CDS 40.0%
TCGTAAGAGGCAAGTTGTTA+GGG - chr2_3:36072928-36072947 Msa0289790:CDS 40.0%
CAAGTTGTTAGGGATCACAA+AGG - chr2_3:36072938-36072957 Msa0289790:CDS 40.0%
! CAATTTTTCGCTCGTGCTTT+TGG + chr2_3:36073036-36073055 None:intergenic 40.0%
!! TCAAGGCATTGGTATGTTAC+TGG - chr2_3:36073106-36073125 Msa0289790:CDS 40.0%
!! CACAATCATGATTTGCTTGG+TGG - chr2_3:36073142-36073161 Msa0289790:CDS 40.0%
!! AGGCTGGAGTGTTTGTTATT+TGG - chr2_3:36073310-36073329 Msa0289790:CDS 40.0%
ACCCCAAGAAACACAACAAA+CGG + chr2_3:36073385-36073404 None:intergenic 40.0%
TATGCCAGTCGCAAAAACAA+TGG + chr2_3:36073425-36073444 None:intergenic 40.0%
TTGCGACTGGCATAGTAATA+CGG - chr2_3:36073431-36073450 Msa0289790:intron 40.0%
GCTTACCATTCATTGCAATC+AGG + chr2_3:36073495-36073514 None:intergenic 40.0%
GAATGCATCAAGACAACACT+TGG - chr2_3:36073618-36073637 Msa0289790:CDS 40.0%
! TTTAGGAGAGGAAAGTACGG+GGG - chr2_3:36072650-36072669 Msa0289790:CDS 45.0%
TTCATGTCAAGGATACAGGG+AGG - chr2_3:36072988-36073007 Msa0289790:CDS 45.0%
TCAAGGATACAGGGAGGATA+GGG - chr2_3:36072994-36073013 Msa0289790:CDS 45.0%
! TGCTTTGTGTGGATTGCTAC+CGG - chr2_3:36073165-36073184 Msa0289790:CDS 45.0%
! GACATGTTTTCCGATGCATG+TGG - chr2_3:36073211-36073230 Msa0289790:CDS 45.0%
CTTAACTGCACCACATGCAT+CGG + chr2_3:36073224-36073243 None:intergenic 45.0%
AGTGTCTCGCAAACATACGA+GGG + chr2_3:36073273-36073292 None:intergenic 45.0%
TAGTGTCTCGCAAACATACG+AGG + chr2_3:36073274-36073293 None:intergenic 45.0%
!! TGGCCGTTTGTTGTGTTTCT+TGG - chr2_3:36073379-36073398 Msa0289790:CDS 45.0%
!! GGCCGTTTGTTGTGTTTCTT+GGG - chr2_3:36073380-36073399 Msa0289790:CDS 45.0%
!! GCCGTTTGTTGTGTTTCTTG+GGG - chr2_3:36073381-36073400 Msa0289790:CDS 45.0%
!!! CAGACCATTGTTTTTGCGAC+TGG - chr2_3:36073418-36073437 Msa0289790:CDS 45.0%
TGCGACTGGCATAGTAATAC+GGG - chr2_3:36073432-36073451 Msa0289790:intron 45.0%
!! ACAATCTGTGATGGGTTGCA+GGG + chr2_3:36073579-36073598 None:intergenic 45.0%
CCAAGCACACAATCTGTGAT+GGG + chr2_3:36073587-36073606 None:intergenic 45.0%
! TTTAGGAGAGGAAAGTACGG+GGG - chr2_3:36072650-36072669 Msa0289790:CDS 45.0%
TTCATGTCAAGGATACAGGG+AGG - chr2_3:36072988-36073007 Msa0289790:CDS 45.0%
TCAAGGATACAGGGAGGATA+GGG - chr2_3:36072994-36073013 Msa0289790:CDS 45.0%
! TGCTTTGTGTGGATTGCTAC+CGG - chr2_3:36073165-36073184 Msa0289790:CDS 45.0%
! GACATGTTTTCCGATGCATG+TGG - chr2_3:36073211-36073230 Msa0289790:CDS 45.0%
CTTAACTGCACCACATGCAT+CGG + chr2_3:36073224-36073243 None:intergenic 45.0%
AGTGTCTCGCAAACATACGA+GGG + chr2_3:36073273-36073292 None:intergenic 45.0%
TAGTGTCTCGCAAACATACG+AGG + chr2_3:36073274-36073293 None:intergenic 45.0%
!! TGGCCGTTTGTTGTGTTTCT+TGG - chr2_3:36073379-36073398 Msa0289790:CDS 45.0%
!! GGCCGTTTGTTGTGTTTCTT+GGG - chr2_3:36073380-36073399 Msa0289790:CDS 45.0%
!! GCCGTTTGTTGTGTTTCTTG+GGG - chr2_3:36073381-36073400 Msa0289790:CDS 45.0%
!!! CAGACCATTGTTTTTGCGAC+TGG - chr2_3:36073418-36073437 Msa0289790:CDS 45.0%
TGCGACTGGCATAGTAATAC+GGG - chr2_3:36073432-36073451 Msa0289790:intron 45.0%
!! ACAATCTGTGATGGGTTGCA+GGG + chr2_3:36073579-36073598 None:intergenic 45.0%
CCAAGCACACAATCTGTGAT+GGG + chr2_3:36073587-36073606 None:intergenic 45.0%
GTCAAGGATACAGGGAGGAT+AGG - chr2_3:36072993-36073012 Msa0289790:CDS 50.0%
CAAGGATACAGGGAGGATAG+GGG - chr2_3:36072995-36073014 Msa0289790:CDS 50.0%
GGAGGATAGGGGACTAACTA+TGG - chr2_3:36073006-36073025 Msa0289790:CDS 50.0%
!! TTGCTTGGTGGTGCTTTGTG+TGG - chr2_3:36073154-36073173 Msa0289790:CDS 50.0%
CGCAAACATACGAGGGTCTT+TGG + chr2_3:36073266-36073285 None:intergenic 50.0%
!! CACAATCTGTGATGGGTTGC+AGG + chr2_3:36073580-36073599 None:intergenic 50.0%
CCCATCACAGATTGTGTGCT+TGG - chr2_3:36073584-36073603 Msa0289790:CDS 50.0%
GCCAAGCACACAATCTGTGA+TGG + chr2_3:36073588-36073607 None:intergenic 50.0%
GTCAAGGATACAGGGAGGAT+AGG - chr2_3:36072993-36073012 Msa0289790:CDS 50.0%
CAAGGATACAGGGAGGATAG+GGG - chr2_3:36072995-36073014 Msa0289790:CDS 50.0%
GGAGGATAGGGGACTAACTA+TGG - chr2_3:36073006-36073025 Msa0289790:CDS 50.0%
!! TTGCTTGGTGGTGCTTTGTG+TGG - chr2_3:36073154-36073173 Msa0289790:CDS 50.0%
CGCAAACATACGAGGGTCTT+TGG + chr2_3:36073266-36073285 None:intergenic 50.0%
!! CACAATCTGTGATGGGTTGC+AGG + chr2_3:36073580-36073599 None:intergenic 50.0%
CCCATCACAGATTGTGTGCT+TGG - chr2_3:36073584-36073603 Msa0289790:CDS 50.0%
GCCAAGCACACAATCTGTGA+TGG + chr2_3:36073588-36073607 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 36072444 36073648 36072444 ID=Msa0289790;Name=Msa0289790
chr2_3 mRNA 36072444 36073648 36072444 ID=Msa0289790-mRNA-1;Parent=Msa0289790;Name=Msa0289790-mRNA-1;_AED=0.26;_eAED=0.33;_QI=0|0|0|1|1|1|2|0|371
chr2_3 exon 36073527 36073648 36073527 ID=Msa0289790-mRNA-1:exon:11850;Parent=Msa0289790-mRNA-1
chr2_3 exon 36072444 36073437 36072444 ID=Msa0289790-mRNA-1:exon:11849;Parent=Msa0289790-mRNA-1
chr2_3 CDS 36073527 36073648 36073527 ID=Msa0289790-mRNA-1:cds;Parent=Msa0289790-mRNA-1
chr2_3 CDS 36072444 36073437 36072444 ID=Msa0289790-mRNA-1:cds;Parent=Msa0289790-mRNA-1
Gene Sequence

>Msa0289790

ATGGCTTTGGGAAGGTTATTAAAACACAACACCTTGATTCATATAAAATATAGGTATTCAAGCATGCAAGGAAGTTCACAGTTTGCGAATCCTTTGTTTGTGAATGTTTGGGAATTCCAAGTGAGAGGAAAGTACGGGGGACAATGTAATGCAGATGTCGAAAATGCATACTTAGATGAACGTTCACTGGATGAATCTAATGAAGATGTACATGTTTTTTCGGATGGAATTCACGCATCTGAAGTCAATCCGATTGTTATAAAAGATATGGCAGATATACTGAAGATTGACATTGAAAACTTTTGTTTAGATGATGTGGAAAGGTATGAGTTTGTTAGGTTGGAGGTTGCCTACATGTTTTACTCTTGGTTTGCTAGAATGTCTGGATTTTCAGTTCGTAAGAGGCAAGTTGTTAGGGATCACAAAGGTGAAATTATTCAGAAAACTTTTGTTTGTTCATGTCAAGGATACAGGGAGGATAGGGGACTAACTATGGAAACCCAAAAGCACGAGCGAAAAATTGAAACAAGATGTGGGTGTAACGCAAAATTTCGAGTCCATTTAGATATTTTGTCAAGGCATTGGTATGTTACTGGATTTGAAATTGATCACAATCATGATTTGCTTGGTGGTGCTTTGTGTGGATTGCTACCGGCATATAGAAAAATGACTCAGGCTGACATGTTTTCCGATGCATGTGGTGCAGTTAAGTATCTTCGAGATCTTTGCACCAAAGACCCTCGTATGTTTGCGAGACACTATTTTGACAATGATATGAGGCTGGAGTGTTTGTTATTTGGAGATGTTTTGACCTTTGATGCAACATATCAGAAAAACAAGTACAATTGGCCGTTTGTTGTGTTTCTTGGGGTTAATCACCATAATCAGACCATTGTTTTTGCGACTGGCATAGTAATACGGGAGACTAAAGAAACAAATGCATGGTTGTTGGAACAATTCCTGATTGCAATGAATGGTAAGCCTCCTTTATCCGTTATAACTGATGGTGACCTTGCAATGAAATATTCCATTAAAAAAATCTTCCCTGCAACCCATCACAGATTGTGTGCTTGGCATCTGCTAAAGAATGCATCAAGACAACACTTGGATCAATGA

Protein sequence

>Msa0289790

MALGRLLKHNTLIHIKYRYSSMQGSSQFANPLFVNVWEFQVRGKYGGQCNADVENAYLDERSLDESNEDVHVFSDGIHASEVNPIVIKDMADILKIDIENFCLDDVERYEFVRLEVAYMFYSWFARMSGFSVRKRQVVRDHKGEIIQKTFVCSCQGYREDRGLTMETQKHERKIETRCGCNAKFRVHLDILSRHWYVTGFEIDHNHDLLGGALCGLLPAYRKMTQADMFSDACGAVKYLRDLCTKDPRMFARHYFDNDMRLECLLFGDVLTFDATYQKNKYNWPFVVFLGVNHHNQTIVFATGIVIRETKETNAWLLEQFLIAMNGKPPLSVITDGDLAMKYSIKKIFPATHHRLCAWHLLKNASRQHLDQ*