Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289790 | GAU32889.1 | 52.674 | 374 | 114 | 4 | 55 | 365 | 10 | 383 | 2.08e-120 | 370 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289790 | sp|Q9SZL8|FRS5_ARATH | 30.368 | 326 | 160 | 7 | 103 | 362 | 68 | 392 | 4.47e-36 | 142 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289790 | A0A2Z6NML7 | 52.674 | 374 | 114 | 4 | 55 | 365 | 10 | 383 | 9.93e-121 | 370 |
Gene ID | Type | Classification |
---|---|---|
Msa0289790 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289790 | MtrunA17_Chr1g0203051 | 37.008 | 381 | 179 | 3 | 46 | 365 | 19 | 399 | 9.48e-83 | 264 |
Msa0289790 | MtrunA17_Chr2g0287651 | 33.233 | 331 | 159 | 2 | 96 | 364 | 66 | 396 | 2.17e-57 | 200 |
Msa0289790 | MtrunA17_Chr5g0448761 | 30.368 | 326 | 161 | 5 | 103 | 362 | 58 | 383 | 7.27e-41 | 153 |
Msa0289790 | MtrunA17_Chr2g0287061 | 30.719 | 306 | 142 | 9 | 110 | 369 | 188 | 469 | 2.17e-33 | 131 |
Msa0289790 | MtrunA17_Chr6g0458391 | 28.485 | 330 | 178 | 10 | 89 | 367 | 207 | 529 | 1.10e-31 | 126 |
Msa0289790 | MtrunA17_Chr5g0431001 | 26.480 | 321 | 164 | 7 | 116 | 365 | 72 | 391 | 1.17e-29 | 119 |
Msa0289790 | MtrunA17_Chr2g0331371 | 48.387 | 124 | 64 | 0 | 86 | 209 | 36 | 159 | 1.21e-29 | 113 |
Msa0289790 | MtrunA17_Chr2g0276841 | 26.814 | 317 | 165 | 8 | 111 | 361 | 76 | 391 | 2.51e-29 | 119 |
Msa0289790 | MtrunA17_Chr1g0203721 | 28.025 | 314 | 160 | 8 | 115 | 364 | 73 | 384 | 1.07e-28 | 117 |
Msa0289790 | MtrunA17_Chr3g0082121 | 28.526 | 312 | 161 | 8 | 110 | 364 | 48 | 354 | 1.11e-27 | 114 |
Msa0289790 | MtrunA17_Chr1g0171741 | 35.882 | 170 | 108 | 1 | 60 | 229 | 88 | 256 | 1.65e-27 | 109 |
Msa0289790 | MtrunA17_Chr8g0389811 | 39.695 | 131 | 79 | 0 | 86 | 216 | 65 | 195 | 2.48e-27 | 107 |
Msa0289790 | MtrunA17_Chr1g0198761 | 27.246 | 334 | 166 | 10 | 103 | 361 | 42 | 373 | 5.30e-27 | 112 |
Msa0289790 | MtrunA17_Chr2g0324011 | 25.705 | 319 | 170 | 5 | 111 | 366 | 16 | 330 | 8.12e-27 | 111 |
Msa0289790 | MtrunA17_Chr3g0080351 | 24.931 | 361 | 211 | 8 | 55 | 365 | 35 | 385 | 1.35e-26 | 111 |
Msa0289790 | MtrunA17_Chr2g0296781 | 47.423 | 97 | 51 | 0 | 266 | 362 | 213 | 309 | 1.78e-25 | 108 |
Msa0289790 | MtrunA17_Chr2g0329031 | 26.061 | 330 | 178 | 8 | 96 | 367 | 5 | 326 | 3.39e-25 | 107 |
Msa0289790 | MtrunA17_Chr5g0441581 | 25.079 | 315 | 165 | 8 | 102 | 362 | 40 | 337 | 6.63e-25 | 106 |
Msa0289790 | MtrunA17_Chr6g0477261 | 45.361 | 97 | 53 | 0 | 266 | 362 | 102 | 198 | 2.37e-24 | 104 |
Msa0289790 | MtrunA17_Chr1g0202341 | 41.880 | 117 | 67 | 1 | 254 | 370 | 259 | 374 | 5.68e-24 | 103 |
Msa0289790 | MtrunA17_Chr2g0294841 | 26.462 | 325 | 167 | 10 | 111 | 365 | 51 | 373 | 1.24e-23 | 102 |
Msa0289790 | MtrunA17_Chr8g0363841 | 25.962 | 312 | 163 | 6 | 117 | 364 | 29 | 336 | 1.71e-23 | 102 |
Msa0289790 | MtrunA17_Chr5g0448511 | 34.862 | 109 | 71 | 0 | 254 | 362 | 47 | 155 | 3.00e-23 | 101 |
Msa0289790 | MtrunA17_Chr6g0473421 | 44.792 | 96 | 53 | 0 | 86 | 181 | 36 | 131 | 8.18e-23 | 93.6 |
Msa0289790 | MtrunA17_Chr1g0207551 | 25.397 | 315 | 168 | 6 | 110 | 362 | 39 | 348 | 2.50e-22 | 99.0 |
Msa0289790 | MtrunA17_Chr1g0164591 | 43.119 | 109 | 62 | 0 | 256 | 364 | 126 | 234 | 5.34e-22 | 95.5 |
Msa0289790 | MtrunA17_Chr1g0196541 | 44.330 | 97 | 54 | 0 | 266 | 362 | 213 | 309 | 1.27e-21 | 96.7 |
Msa0289790 | MtrunA17_Chr1g0172931 | 39.806 | 103 | 62 | 0 | 85 | 187 | 56 | 158 | 1.35e-20 | 87.4 |
Msa0289790 | MtrunA17_Chr5g0440451 | 28.205 | 156 | 100 | 1 | 219 | 362 | 209 | 364 | 5.44e-20 | 92.0 |
Msa0289790 | MtrunA17_Chr2g0291591 | 34.127 | 126 | 82 | 1 | 238 | 363 | 253 | 377 | 2.69e-19 | 89.4 |
Msa0289790 | MtrunA17_Chr3g0118611 | 27.517 | 149 | 96 | 1 | 231 | 367 | 118 | 266 | 5.51e-19 | 88.6 |
Msa0289790 | MtrunA17_Chr2g0291581 | 35.000 | 100 | 65 | 0 | 254 | 353 | 265 | 364 | 2.39e-16 | 80.5 |
Msa0289790 | MtrunA17_Chr2g0290391 | 31.313 | 99 | 68 | 0 | 267 | 365 | 286 | 384 | 1.64e-11 | 65.9 |
Msa0289790 | MtrunA17_Chr2g0290391 | 35.398 | 113 | 70 | 2 | 117 | 227 | 63 | 174 | 6.31e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0289790 | AT4G38180.1 | 30.368 | 326 | 160 | 7 | 103 | 362 | 68 | 392 | 4.55e-37 | 142 |
Msa0289790 | AT3G06250.2 | 28.283 | 297 | 159 | 7 | 110 | 369 | 195 | 474 | 1.22e-31 | 126 |
Msa0289790 | AT3G06250.1 | 28.283 | 297 | 159 | 7 | 110 | 369 | 195 | 474 | 1.22e-31 | 126 |
Msa0289790 | AT3G06250.3 | 28.283 | 297 | 159 | 7 | 110 | 369 | 195 | 474 | 1.22e-31 | 126 |
Msa0289790 | AT1G10240.2 | 28.076 | 317 | 161 | 8 | 111 | 361 | 54 | 369 | 3.73e-29 | 119 |
Msa0289790 | AT1G10240.1 | 28.076 | 317 | 161 | 8 | 111 | 361 | 54 | 369 | 3.73e-29 | 119 |
Msa0289790 | AT5G18960.2 | 27.667 | 300 | 160 | 7 | 110 | 369 | 216 | 498 | 6.19e-29 | 119 |
Msa0289790 | AT5G18960.1 | 27.667 | 300 | 160 | 7 | 110 | 369 | 216 | 498 | 6.19e-29 | 119 |
Msa0289790 | AT1G76320.1 | 26.433 | 314 | 168 | 6 | 110 | 366 | 2 | 309 | 3.08e-23 | 102 |
Msa0289790 | AT1G76320.4 | 26.433 | 314 | 168 | 6 | 110 | 366 | 2 | 309 | 3.08e-23 | 102 |
Msa0289790 | AT1G76320.2 | 26.433 | 314 | 168 | 6 | 110 | 366 | 2 | 309 | 3.13e-23 | 102 |
Msa0289790 | AT1G76320.3 | 26.433 | 314 | 168 | 6 | 110 | 366 | 2 | 309 | 3.83e-23 | 101 |
Msa0289790 | AT3G22170.2 | 24.533 | 375 | 224 | 9 | 46 | 365 | 10 | 380 | 5.94e-23 | 101 |
Msa0289790 | AT3G22170.1 | 24.533 | 375 | 224 | 9 | 46 | 365 | 10 | 380 | 5.94e-23 | 101 |
Msa0289790 | AT2G32250.5 | 24.731 | 279 | 181 | 5 | 110 | 365 | 43 | 315 | 3.24e-22 | 99.0 |
Msa0289790 | AT2G32250.6 | 24.731 | 279 | 181 | 5 | 110 | 365 | 43 | 315 | 3.60e-22 | 99.0 |
Msa0289790 | AT2G32250.1 | 24.731 | 279 | 181 | 5 | 110 | 365 | 43 | 315 | 3.60e-22 | 99.0 |
Msa0289790 | AT2G32250.3 | 24.731 | 279 | 181 | 5 | 110 | 365 | 43 | 315 | 3.60e-22 | 99.0 |
Msa0289790 | AT2G32250.8 | 24.731 | 279 | 181 | 5 | 110 | 365 | 2 | 274 | 3.66e-22 | 98.6 |
Msa0289790 | AT2G32250.7 | 24.731 | 279 | 181 | 5 | 110 | 365 | 2 | 274 | 3.91e-22 | 98.6 |
Msa0289790 | AT2G32250.2 | 24.731 | 279 | 181 | 5 | 110 | 365 | 43 | 315 | 4.02e-22 | 98.6 |
Msa0289790 | AT2G32250.4 | 24.731 | 279 | 181 | 5 | 110 | 365 | 43 | 315 | 4.02e-22 | 98.6 |
Msa0289790 | AT5G28530.5 | 27.481 | 262 | 178 | 5 | 111 | 361 | 61 | 321 | 5.81e-22 | 97.8 |
Msa0289790 | AT5G28530.4 | 27.481 | 262 | 178 | 5 | 111 | 361 | 61 | 321 | 6.01e-22 | 97.8 |
Msa0289790 | AT1G52520.1 | 25.566 | 309 | 165 | 9 | 110 | 362 | 90 | 389 | 9.81e-22 | 97.4 |
Msa0289790 | AT2G27110.2 | 23.377 | 308 | 169 | 5 | 110 | 367 | 54 | 344 | 1.08e-21 | 97.4 |
Msa0289790 | AT2G27110.1 | 23.377 | 308 | 169 | 5 | 110 | 367 | 54 | 344 | 1.08e-21 | 97.4 |
Msa0289790 | AT4G15090.1 | 24.437 | 311 | 169 | 6 | 115 | 362 | 61 | 368 | 2.96e-21 | 95.9 |
Msa0289790 | AT4G15090.5 | 24.437 | 311 | 169 | 6 | 115 | 362 | 61 | 368 | 2.96e-21 | 95.9 |
Msa0289790 | AT4G15090.3 | 24.437 | 311 | 169 | 6 | 115 | 362 | 61 | 368 | 2.96e-21 | 95.9 |
Msa0289790 | AT4G15090.2 | 24.437 | 311 | 169 | 6 | 115 | 362 | 61 | 368 | 2.96e-21 | 95.9 |
Msa0289790 | AT4G15090.4 | 24.437 | 311 | 169 | 6 | 115 | 362 | 61 | 368 | 2.96e-21 | 95.9 |
Msa0289790 | AT2G27110.3 | 28.846 | 156 | 99 | 1 | 224 | 367 | 44 | 199 | 4.07e-21 | 95.5 |
Msa0289790 | AT1G80010.1 | 38.889 | 126 | 76 | 1 | 238 | 363 | 291 | 415 | 7.52e-21 | 94.7 |
Msa0289790 | AT5G28530.1 | 26.769 | 325 | 163 | 12 | 111 | 361 | 61 | 384 | 2.71e-19 | 90.1 |
Msa0289790 | AT5G28530.3 | 26.769 | 325 | 163 | 12 | 111 | 361 | 61 | 384 | 3.02e-19 | 89.7 |
Msa0289790 | AT5G28530.2 | 26.769 | 325 | 163 | 12 | 111 | 361 | 61 | 384 | 3.02e-19 | 89.7 |
Msa0289790 | AT4G19990.7 | 26.280 | 293 | 178 | 9 | 107 | 361 | 37 | 329 | 1.08e-18 | 88.2 |
Msa0289790 | AT4G19990.3 | 26.280 | 293 | 178 | 9 | 107 | 361 | 23 | 315 | 1.21e-18 | 88.2 |
Msa0289790 | AT4G19990.4 | 26.280 | 293 | 178 | 9 | 107 | 361 | 23 | 315 | 1.21e-18 | 88.2 |
Msa0289790 | AT4G19990.5 | 26.280 | 293 | 178 | 9 | 107 | 361 | 23 | 315 | 1.26e-18 | 88.2 |
Msa0289790 | AT4G19990.6 | 26.280 | 293 | 178 | 9 | 107 | 361 | 23 | 315 | 1.38e-18 | 87.8 |
Msa0289790 | AT4G19990.2 | 26.280 | 293 | 178 | 9 | 107 | 361 | 23 | 315 | 1.38e-18 | 87.8 |
Msa0289790 | AT4G38170.1 | 35.644 | 101 | 64 | 1 | 256 | 355 | 50 | 150 | 2.29e-17 | 84.0 |
Msa0289790 | AT4G19990.1 | 25.781 | 256 | 153 | 8 | 143 | 361 | 3 | 258 | 1.29e-15 | 79.0 |
Find 60 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGCTGGAGTGTTTGTTATT+TGG | 0.226965 | 2_3:-36072760 | Msa0289790:CDS |
TGGCCGTTTGTTGTGTTTCT+TGG | 0.247396 | 2_3:-36072691 | Msa0289790:CDS |
TCAAGGCATTGGTATGTTAC+TGG | 0.272027 | 2_3:-36072964 | Msa0289790:CDS |
ATCCTTTGTTTGTGAATGTT+TGG | 0.302405 | 2_3:-36073538 | Msa0289790:CDS |
TCTTGGTTTGCTAGAATGTC+TGG | 0.309748 | 2_3:-36073174 | Msa0289790:CDS |
GCCTTGACAAAATATCTAAA+TGG | 0.312124 | 2_3:+36072980 | None:intergenic |
CACAATCTGTGATGGGTTGC+AGG | 0.322966 | 2_3:+36072493 | None:intergenic |
CGCAAACATACGAGGGTCTT+TGG | 0.327926 | 2_3:+36072807 | None:intergenic |
AAGGTATGAGTTTGTTAGGT+TGG | 0.331013 | 2_3:-36073217 | Msa0289790:CDS |
GGCCGTTTGTTGTGTTTCTT+GGG | 0.333114 | 2_3:-36072690 | Msa0289790:CDS |
TTTGTTCATGTCAAGGATAC+AGG | 0.344834 | 2_3:-36073086 | Msa0289790:CDS |
TTCGTAAGAGGCAAGTTGTT+AGG | 0.349124 | 2_3:-36073143 | Msa0289790:CDS |
TGGAAAGGTATGAGTTTGTT+AGG | 0.350127 | 2_3:-36073221 | Msa0289790:CDS |
GGAGGATAGGGGACTAACTA+TGG | 0.358554 | 2_3:-36073064 | Msa0289790:CDS |
TCCGATTGTTATAAAAGATA+TGG | 0.376282 | 2_3:-36073289 | Msa0289790:CDS |
TCCTTTGTTTGTGAATGTTT+GGG | 0.386636 | 2_3:-36073537 | Msa0289790:CDS |
CCTTGATTCATATAAAATAT+AGG | 0.388495 | 2_3:-36073595 | Msa0289790:CDS |
TCAAGGATACAGGGAGGATA+GGG | 0.394949 | 2_3:-36073076 | Msa0289790:CDS |
CCCATCACAGATTGTGTGCT+TGG | 0.415583 | 2_3:-36072486 | Msa0289790:CDS |
TTGCGACTGGCATAGTAATA+CGG | 0.422862 | 2_3:-36072639 | Msa0289790:CDS |
CCATCAGTTATAACGGATAA+AGG | 0.426634 | 2_3:+36072553 | None:intergenic |
AGAAACAAATGCATGGTTGT+TGG | 0.446659 | 2_3:-36072608 | Msa0289790:CDS |
GTATGAGTTTGTTAGGTTGG+AGG | 0.458750 | 2_3:-36073214 | Msa0289790:CDS |
TCGTAAGAGGCAAGTTGTTA+GGG | 0.461755 | 2_3:-36073142 | Msa0289790:CDS |
GCTTACCATTCATTGCAATC+AGG | 0.467383 | 2_3:+36072578 | None:intergenic |
TTTCTGATATGTTGCATCAA+AGG | 0.475846 | 2_3:+36072726 | None:intergenic |
GATCACAATCATGATTTGCT+TGG | 0.489117 | 2_3:-36072931 | Msa0289790:CDS |
ACCCCAAGAAACACAACAAA+CGG | 0.490549 | 2_3:+36072688 | None:intergenic |
TGCGACTGGCATAGTAATAC+GGG | 0.495275 | 2_3:-36072638 | Msa0289790:CDS |
TGCTTTGTGTGGATTGCTAC+CGG | 0.498827 | 2_3:-36072905 | Msa0289790:CDS |
CCTTTATCCGTTATAACTGA+TGG | 0.499846 | 2_3:-36072553 | Msa0289790:CDS |
CAATTCCTGATTGCAATGAA+TGG | 0.503345 | 2_3:-36072583 | Msa0289790:CDS |
CACAATCATGATTTGCTTGG+TGG | 0.504500 | 2_3:-36072928 | Msa0289790:CDS |
TAATGGAATATTTCATTGCA+AGG | 0.505383 | 2_3:+36072527 | None:intergenic |
GTCAAGGATACAGGGAGGAT+AGG | 0.518923 | 2_3:-36073077 | Msa0289790:CDS |
GAATGCATCAAGACAACACT+TGG | 0.538588 | 2_3:-36072452 | Msa0289790:CDS |
CTTAACTGCACCACATGCAT+CGG | 0.540821 | 2_3:+36072849 | None:intergenic |
GGATTTAGGAGAGGAAAGTA+CGG | 0.541052 | 2_3:-36073423 | Msa0289790:intron |
TTGCTTGGTGGTGCTTTGTG+TGG | 0.542188 | 2_3:-36072916 | Msa0289790:CDS |
TCCCAAACATTCACAAACAA+AGG | 0.542836 | 2_3:+36073536 | None:intergenic |
AAGGTCACCATCAGTTATAA+CGG | 0.550217 | 2_3:+36072546 | None:intergenic |
GCCAAGCACACAATCTGTGA+TGG | 0.550854 | 2_3:+36072485 | None:intergenic |
ATACTTAGATGAACGTTCAC+TGG | 0.558982 | 2_3:-36073370 | Msa0289790:CDS |
TTGTTCATGTCAAGGATACA+GGG | 0.566377 | 2_3:-36073085 | Msa0289790:CDS |
TTTGTTTAGATGATGTGGAA+AGG | 0.567827 | 2_3:-36073236 | Msa0289790:CDS |
TATAGGTATTCAAGCATGCA+AGG | 0.570599 | 2_3:-36073578 | Msa0289790:CDS |
GATTTAGGAGAGGAAAGTAC+GGG | 0.571151 | 2_3:-36073422 | Msa0289790:intron |
AAACCAAGAGTAAAACATGT+AGG | 0.581375 | 2_3:+36073188 | None:intergenic |
ACAATCTGTGATGGGTTGCA+GGG | 0.584152 | 2_3:+36072494 | None:intergenic |
CAAGGATACAGGGAGGATAG+GGG | 0.631155 | 2_3:-36073075 | Msa0289790:CDS |
CCAAGCACACAATCTGTGAT+GGG | 0.632438 | 2_3:+36072486 | None:intergenic |
GCCGTTTGTTGTGTTTCTTG+GGG | 0.636477 | 2_3:-36072689 | Msa0289790:CDS |
TAGTGTCTCGCAAACATACG+AGG | 0.640794 | 2_3:+36072799 | None:intergenic |
AGACTAAAGAAACAAATGCA+TGG | 0.649044 | 2_3:-36072615 | Msa0289790:CDS |
TCAGTTATAACGGATAAAGG+AGG | 0.696052 | 2_3:+36072556 | None:intergenic |
ATTTAGGAGAGGAAAGTACG+GGG | 0.710087 | 2_3:-36073421 | Msa0289790:intron |
AGTGTCTCGCAAACATACGA+GGG | 0.729655 | 2_3:+36072800 | None:intergenic |
CAAGTTGTTAGGGATCACAA+AGG | 0.736584 | 2_3:-36073132 | Msa0289790:CDS |
TTCATGTCAAGGATACAGGG+AGG | 0.738300 | 2_3:-36073082 | Msa0289790:CDS |
TTTAGGAGAGGAAAGTACGG+GGG | 0.775693 | 2_3:-36073420 | Msa0289790:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CCTATATTTTATATGAATCA+AGG | + | chr2_3:36072478-36072497 | None:intergenic | 20.0% |
!! | CCTTGATTCATATAAAATAT+AGG | - | chr2_3:36072475-36072494 | Msa0289790:CDS | 20.0% |
!! | TTAAAAGATTATCTTGTTAC+AGG | - | chr2_3:36072626-36072645 | Msa0289790:CDS | 20.0% |
!!! | CCTATATTTTATATGAATCA+AGG | + | chr2_3:36072478-36072497 | None:intergenic | 20.0% |
!! | CCTTGATTCATATAAAATAT+AGG | - | chr2_3:36072475-36072494 | Msa0289790:CDS | 20.0% |
!! | TTAAAAGATTATCTTGTTAC+AGG | - | chr2_3:36072626-36072645 | Msa0289790:CDS | 20.0% |
! | ATTATCTTGTTACAGGATTT+AGG | - | chr2_3:36072633-36072652 | Msa0289790:CDS | 25.0% |
!!! | TGAAGATGTACATGTTTTTT+CGG | - | chr2_3:36072733-36072752 | Msa0289790:CDS | 25.0% |
! | TCCGATTGTTATAAAAGATA+TGG | - | chr2_3:36072781-36072800 | Msa0289790:CDS | 25.0% |
!! | GCCATATCTTTTATAACAAT+CGG | + | chr2_3:36072785-36072804 | None:intergenic | 25.0% |
!!! | AAACTTTTGTTTAGATGATG+TGG | - | chr2_3:36072829-36072848 | Msa0289790:CDS | 25.0% |
! | GAAAAATTGAAACAAGATGT+GGG | - | chr2_3:36073047-36073066 | Msa0289790:CDS | 25.0% |
!! | TCCATTTAGATATTTTGTCA+AGG | - | chr2_3:36073089-36073108 | Msa0289790:CDS | 25.0% |
!!! | ACTATTTTGACAATGATATG+AGG | - | chr2_3:36073290-36073309 | Msa0289790:CDS | 25.0% |
! | ATCAGAAAAACAAGTACAAT+TGG | - | chr2_3:36073359-36073378 | Msa0289790:CDS | 25.0% |
! | TAATGGAATATTTCATTGCA+AGG | + | chr2_3:36073546-36073565 | None:intergenic | 25.0% |
! | ATTATCTTGTTACAGGATTT+AGG | - | chr2_3:36072633-36072652 | Msa0289790:CDS | 25.0% |
!!! | TGAAGATGTACATGTTTTTT+CGG | - | chr2_3:36072733-36072752 | Msa0289790:CDS | 25.0% |
! | TCCGATTGTTATAAAAGATA+TGG | - | chr2_3:36072781-36072800 | Msa0289790:CDS | 25.0% |
!! | GCCATATCTTTTATAACAAT+CGG | + | chr2_3:36072785-36072804 | None:intergenic | 25.0% |
!!! | AAACTTTTGTTTAGATGATG+TGG | - | chr2_3:36072829-36072848 | Msa0289790:CDS | 25.0% |
! | GAAAAATTGAAACAAGATGT+GGG | - | chr2_3:36073047-36073066 | Msa0289790:CDS | 25.0% |
!! | TCCATTTAGATATTTTGTCA+AGG | - | chr2_3:36073089-36073108 | Msa0289790:CDS | 25.0% |
!!! | ACTATTTTGACAATGATATG+AGG | - | chr2_3:36073290-36073309 | Msa0289790:CDS | 25.0% |
! | ATCAGAAAAACAAGTACAAT+TGG | - | chr2_3:36073359-36073378 | Msa0289790:CDS | 25.0% |
! | TAATGGAATATTTCATTGCA+AGG | + | chr2_3:36073546-36073565 | None:intergenic | 25.0% |
! | ATCCTTTGTTTGTGAATGTT+TGG | - | chr2_3:36072532-36072551 | Msa0289790:CDS | 30.0% |
! | TCCTTTGTTTGTGAATGTTT+GGG | - | chr2_3:36072533-36072552 | Msa0289790:CDS | 30.0% |
! | TTTCCAATTTTCAAAGCTAC+AGG | + | chr2_3:36072576-36072595 | None:intergenic | 30.0% |
TTTGTTTAGATGATGTGGAA+AGG | - | chr2_3:36072834-36072853 | Msa0289790:CDS | 30.0% | |
AAACCAAGAGTAAAACATGT+AGG | + | chr2_3:36072885-36072904 | None:intergenic | 30.0% | |
!! | ACTTTTGTTTGTTCATGTCA+AGG | - | chr2_3:36072977-36072996 | Msa0289790:CDS | 30.0% |
CGAAAAATTGAAACAAGATG+TGG | - | chr2_3:36073046-36073065 | Msa0289790:CDS | 30.0% | |
GCCTTGACAAAATATCTAAA+TGG | + | chr2_3:36073093-36073112 | None:intergenic | 30.0% | |
! | TAGATATTTTGTCAAGGCAT+TGG | - | chr2_3:36073095-36073114 | Msa0289790:CDS | 30.0% |
!!! | TGAGTCATTTTTCTATATGC+CGG | + | chr2_3:36073187-36073206 | None:intergenic | 30.0% |
TTTCTGATATGTTGCATCAA+AGG | + | chr2_3:36073347-36073366 | None:intergenic | 30.0% | |
CAAAAACAATGGTCTGATTA+TGG | + | chr2_3:36073414-36073433 | None:intergenic | 30.0% | |
AGACTAAAGAAACAAATGCA+TGG | - | chr2_3:36073455-36073474 | Msa0289790:intron | 30.0% | |
!!! | TGCAGGGAAGATTTTTTTAA+TGG | + | chr2_3:36073563-36073582 | None:intergenic | 30.0% |
! | ATCCTTTGTTTGTGAATGTT+TGG | - | chr2_3:36072532-36072551 | Msa0289790:CDS | 30.0% |
! | TCCTTTGTTTGTGAATGTTT+GGG | - | chr2_3:36072533-36072552 | Msa0289790:CDS | 30.0% |
! | TTTCCAATTTTCAAAGCTAC+AGG | + | chr2_3:36072576-36072595 | None:intergenic | 30.0% |
TTTGTTTAGATGATGTGGAA+AGG | - | chr2_3:36072834-36072853 | Msa0289790:CDS | 30.0% | |
AAACCAAGAGTAAAACATGT+AGG | + | chr2_3:36072885-36072904 | None:intergenic | 30.0% | |
!! | ACTTTTGTTTGTTCATGTCA+AGG | - | chr2_3:36072977-36072996 | Msa0289790:CDS | 30.0% |
CGAAAAATTGAAACAAGATG+TGG | - | chr2_3:36073046-36073065 | Msa0289790:CDS | 30.0% | |
GCCTTGACAAAATATCTAAA+TGG | + | chr2_3:36073093-36073112 | None:intergenic | 30.0% | |
! | TAGATATTTTGTCAAGGCAT+TGG | - | chr2_3:36073095-36073114 | Msa0289790:CDS | 30.0% |
!!! | TGAGTCATTTTTCTATATGC+CGG | + | chr2_3:36073187-36073206 | None:intergenic | 30.0% |
TTTCTGATATGTTGCATCAA+AGG | + | chr2_3:36073347-36073366 | None:intergenic | 30.0% | |
CAAAAACAATGGTCTGATTA+TGG | + | chr2_3:36073414-36073433 | None:intergenic | 30.0% | |
AGACTAAAGAAACAAATGCA+TGG | - | chr2_3:36073455-36073474 | Msa0289790:intron | 30.0% | |
!!! | TGCAGGGAAGATTTTTTTAA+TGG | + | chr2_3:36073563-36073582 | None:intergenic | 30.0% |
TATAGGTATTCAAGCATGCA+AGG | - | chr2_3:36072492-36072511 | Msa0289790:CDS | 35.0% | |
TCCCAAACATTCACAAACAA+AGG | + | chr2_3:36072537-36072556 | None:intergenic | 35.0% | |
!! | GTACCTGTAGCTTTGAAAAT+TGG | - | chr2_3:36072570-36072589 | Msa0289790:CDS | 35.0% |
ATACTTAGATGAACGTTCAC+TGG | - | chr2_3:36072700-36072719 | Msa0289790:CDS | 35.0% | |
!!! | GATGTACATGTTTTTTCGGA+TGG | - | chr2_3:36072737-36072756 | Msa0289790:CDS | 35.0% |
! | TGGAAAGGTATGAGTTTGTT+AGG | - | chr2_3:36072849-36072868 | Msa0289790:CDS | 35.0% |
!! | AAGGTATGAGTTTGTTAGGT+TGG | - | chr2_3:36072853-36072872 | Msa0289790:CDS | 35.0% |
! | TTGCCTACATGTTTTACTCT+TGG | - | chr2_3:36072879-36072898 | Msa0289790:CDS | 35.0% |
TTTGTTCATGTCAAGGATAC+AGG | - | chr2_3:36072984-36073003 | Msa0289790:CDS | 35.0% | |
TTGTTCATGTCAAGGATACA+GGG | - | chr2_3:36072985-36073004 | Msa0289790:CDS | 35.0% | |
! | AATTTTTCGCTCGTGCTTTT+GGG | + | chr2_3:36073035-36073054 | None:intergenic | 35.0% |
!! | GATCACAATCATGATTTGCT+TGG | - | chr2_3:36073139-36073158 | Msa0289790:CDS | 35.0% |
GGCATATAGAAAAATGACTC+AGG | - | chr2_3:36073186-36073205 | Msa0289790:CDS | 35.0% | |
! | TTTTGACAATGATATGAGGC+TGG | - | chr2_3:36073294-36073313 | Msa0289790:CDS | 35.0% |
AGAAACAAATGCATGGTTGT+TGG | - | chr2_3:36073462-36073481 | Msa0289790:intron | 35.0% | |
CAATTCCTGATTGCAATGAA+TGG | - | chr2_3:36073487-36073506 | Msa0289790:intron | 35.0% | |
!! | TCAGTTATAACGGATAAAGG+AGG | + | chr2_3:36073517-36073536 | None:intergenic | 35.0% |
!! | CCATCAGTTATAACGGATAA+AGG | + | chr2_3:36073520-36073539 | None:intergenic | 35.0% |
CCTTTATCCGTTATAACTGA+TGG | - | chr2_3:36073517-36073536 | Msa0289790:intron | 35.0% | |
AAGGTCACCATCAGTTATAA+CGG | + | chr2_3:36073527-36073546 | None:intergenic | 35.0% | |
TATAGGTATTCAAGCATGCA+AGG | - | chr2_3:36072492-36072511 | Msa0289790:CDS | 35.0% | |
TCCCAAACATTCACAAACAA+AGG | + | chr2_3:36072537-36072556 | None:intergenic | 35.0% | |
!! | GTACCTGTAGCTTTGAAAAT+TGG | - | chr2_3:36072570-36072589 | Msa0289790:CDS | 35.0% |
ATACTTAGATGAACGTTCAC+TGG | - | chr2_3:36072700-36072719 | Msa0289790:CDS | 35.0% | |
!!! | GATGTACATGTTTTTTCGGA+TGG | - | chr2_3:36072737-36072756 | Msa0289790:CDS | 35.0% |
! | TGGAAAGGTATGAGTTTGTT+AGG | - | chr2_3:36072849-36072868 | Msa0289790:CDS | 35.0% |
!! | AAGGTATGAGTTTGTTAGGT+TGG | - | chr2_3:36072853-36072872 | Msa0289790:CDS | 35.0% |
! | TTGCCTACATGTTTTACTCT+TGG | - | chr2_3:36072879-36072898 | Msa0289790:CDS | 35.0% |
TTTGTTCATGTCAAGGATAC+AGG | - | chr2_3:36072984-36073003 | Msa0289790:CDS | 35.0% | |
TTGTTCATGTCAAGGATACA+GGG | - | chr2_3:36072985-36073004 | Msa0289790:CDS | 35.0% | |
! | AATTTTTCGCTCGTGCTTTT+GGG | + | chr2_3:36073035-36073054 | None:intergenic | 35.0% |
!! | GATCACAATCATGATTTGCT+TGG | - | chr2_3:36073139-36073158 | Msa0289790:CDS | 35.0% |
GGCATATAGAAAAATGACTC+AGG | - | chr2_3:36073186-36073205 | Msa0289790:CDS | 35.0% | |
! | TTTTGACAATGATATGAGGC+TGG | - | chr2_3:36073294-36073313 | Msa0289790:CDS | 35.0% |
AGAAACAAATGCATGGTTGT+TGG | - | chr2_3:36073462-36073481 | Msa0289790:intron | 35.0% | |
CAATTCCTGATTGCAATGAA+TGG | - | chr2_3:36073487-36073506 | Msa0289790:intron | 35.0% | |
!! | TCAGTTATAACGGATAAAGG+AGG | + | chr2_3:36073517-36073536 | None:intergenic | 35.0% |
!! | CCATCAGTTATAACGGATAA+AGG | + | chr2_3:36073520-36073539 | None:intergenic | 35.0% |
CCTTTATCCGTTATAACTGA+TGG | - | chr2_3:36073517-36073536 | Msa0289790:intron | 35.0% | |
AAGGTCACCATCAGTTATAA+CGG | + | chr2_3:36073527-36073546 | None:intergenic | 35.0% | |
AAGCTACAGGTACTTACACT+TGG | + | chr2_3:36072563-36072582 | None:intergenic | 40.0% | |
CTTGTTACAGGATTTAGGAG+AGG | - | chr2_3:36072638-36072657 | Msa0289790:CDS | 40.0% | |
GGATTTAGGAGAGGAAAGTA+CGG | - | chr2_3:36072647-36072666 | Msa0289790:CDS | 40.0% | |
! | GATTTAGGAGAGGAAAGTAC+GGG | - | chr2_3:36072648-36072667 | Msa0289790:CDS | 40.0% |
! | ATTTAGGAGAGGAAAGTACG+GGG | - | chr2_3:36072649-36072668 | Msa0289790:CDS | 40.0% |
!! | GTATGAGTTTGTTAGGTTGG+AGG | - | chr2_3:36072856-36072875 | Msa0289790:CDS | 40.0% |
!! | TCTTGGTTTGCTAGAATGTC+TGG | - | chr2_3:36072896-36072915 | Msa0289790:CDS | 40.0% |
! | CTGGATTTTCAGTTCGTAAG+AGG | - | chr2_3:36072915-36072934 | Msa0289790:CDS | 40.0% |
TTCGTAAGAGGCAAGTTGTT+AGG | - | chr2_3:36072927-36072946 | Msa0289790:CDS | 40.0% | |
TCGTAAGAGGCAAGTTGTTA+GGG | - | chr2_3:36072928-36072947 | Msa0289790:CDS | 40.0% | |
CAAGTTGTTAGGGATCACAA+AGG | - | chr2_3:36072938-36072957 | Msa0289790:CDS | 40.0% | |
! | CAATTTTTCGCTCGTGCTTT+TGG | + | chr2_3:36073036-36073055 | None:intergenic | 40.0% |
!! | TCAAGGCATTGGTATGTTAC+TGG | - | chr2_3:36073106-36073125 | Msa0289790:CDS | 40.0% |
!! | CACAATCATGATTTGCTTGG+TGG | - | chr2_3:36073142-36073161 | Msa0289790:CDS | 40.0% |
!! | AGGCTGGAGTGTTTGTTATT+TGG | - | chr2_3:36073310-36073329 | Msa0289790:CDS | 40.0% |
ACCCCAAGAAACACAACAAA+CGG | + | chr2_3:36073385-36073404 | None:intergenic | 40.0% | |
TATGCCAGTCGCAAAAACAA+TGG | + | chr2_3:36073425-36073444 | None:intergenic | 40.0% | |
TTGCGACTGGCATAGTAATA+CGG | - | chr2_3:36073431-36073450 | Msa0289790:intron | 40.0% | |
GCTTACCATTCATTGCAATC+AGG | + | chr2_3:36073495-36073514 | None:intergenic | 40.0% | |
GAATGCATCAAGACAACACT+TGG | - | chr2_3:36073618-36073637 | Msa0289790:CDS | 40.0% | |
AAGCTACAGGTACTTACACT+TGG | + | chr2_3:36072563-36072582 | None:intergenic | 40.0% | |
CTTGTTACAGGATTTAGGAG+AGG | - | chr2_3:36072638-36072657 | Msa0289790:CDS | 40.0% | |
GGATTTAGGAGAGGAAAGTA+CGG | - | chr2_3:36072647-36072666 | Msa0289790:CDS | 40.0% | |
! | GATTTAGGAGAGGAAAGTAC+GGG | - | chr2_3:36072648-36072667 | Msa0289790:CDS | 40.0% |
! | ATTTAGGAGAGGAAAGTACG+GGG | - | chr2_3:36072649-36072668 | Msa0289790:CDS | 40.0% |
!! | GTATGAGTTTGTTAGGTTGG+AGG | - | chr2_3:36072856-36072875 | Msa0289790:CDS | 40.0% |
!! | TCTTGGTTTGCTAGAATGTC+TGG | - | chr2_3:36072896-36072915 | Msa0289790:CDS | 40.0% |
! | CTGGATTTTCAGTTCGTAAG+AGG | - | chr2_3:36072915-36072934 | Msa0289790:CDS | 40.0% |
TTCGTAAGAGGCAAGTTGTT+AGG | - | chr2_3:36072927-36072946 | Msa0289790:CDS | 40.0% | |
TCGTAAGAGGCAAGTTGTTA+GGG | - | chr2_3:36072928-36072947 | Msa0289790:CDS | 40.0% | |
CAAGTTGTTAGGGATCACAA+AGG | - | chr2_3:36072938-36072957 | Msa0289790:CDS | 40.0% | |
! | CAATTTTTCGCTCGTGCTTT+TGG | + | chr2_3:36073036-36073055 | None:intergenic | 40.0% |
!! | TCAAGGCATTGGTATGTTAC+TGG | - | chr2_3:36073106-36073125 | Msa0289790:CDS | 40.0% |
!! | CACAATCATGATTTGCTTGG+TGG | - | chr2_3:36073142-36073161 | Msa0289790:CDS | 40.0% |
!! | AGGCTGGAGTGTTTGTTATT+TGG | - | chr2_3:36073310-36073329 | Msa0289790:CDS | 40.0% |
ACCCCAAGAAACACAACAAA+CGG | + | chr2_3:36073385-36073404 | None:intergenic | 40.0% | |
TATGCCAGTCGCAAAAACAA+TGG | + | chr2_3:36073425-36073444 | None:intergenic | 40.0% | |
TTGCGACTGGCATAGTAATA+CGG | - | chr2_3:36073431-36073450 | Msa0289790:intron | 40.0% | |
GCTTACCATTCATTGCAATC+AGG | + | chr2_3:36073495-36073514 | None:intergenic | 40.0% | |
GAATGCATCAAGACAACACT+TGG | - | chr2_3:36073618-36073637 | Msa0289790:CDS | 40.0% | |
! | TTTAGGAGAGGAAAGTACGG+GGG | - | chr2_3:36072650-36072669 | Msa0289790:CDS | 45.0% |
TTCATGTCAAGGATACAGGG+AGG | - | chr2_3:36072988-36073007 | Msa0289790:CDS | 45.0% | |
TCAAGGATACAGGGAGGATA+GGG | - | chr2_3:36072994-36073013 | Msa0289790:CDS | 45.0% | |
! | TGCTTTGTGTGGATTGCTAC+CGG | - | chr2_3:36073165-36073184 | Msa0289790:CDS | 45.0% |
! | GACATGTTTTCCGATGCATG+TGG | - | chr2_3:36073211-36073230 | Msa0289790:CDS | 45.0% |
CTTAACTGCACCACATGCAT+CGG | + | chr2_3:36073224-36073243 | None:intergenic | 45.0% | |
AGTGTCTCGCAAACATACGA+GGG | + | chr2_3:36073273-36073292 | None:intergenic | 45.0% | |
TAGTGTCTCGCAAACATACG+AGG | + | chr2_3:36073274-36073293 | None:intergenic | 45.0% | |
!! | TGGCCGTTTGTTGTGTTTCT+TGG | - | chr2_3:36073379-36073398 | Msa0289790:CDS | 45.0% |
!! | GGCCGTTTGTTGTGTTTCTT+GGG | - | chr2_3:36073380-36073399 | Msa0289790:CDS | 45.0% |
!! | GCCGTTTGTTGTGTTTCTTG+GGG | - | chr2_3:36073381-36073400 | Msa0289790:CDS | 45.0% |
!!! | CAGACCATTGTTTTTGCGAC+TGG | - | chr2_3:36073418-36073437 | Msa0289790:CDS | 45.0% |
TGCGACTGGCATAGTAATAC+GGG | - | chr2_3:36073432-36073451 | Msa0289790:intron | 45.0% | |
!! | ACAATCTGTGATGGGTTGCA+GGG | + | chr2_3:36073579-36073598 | None:intergenic | 45.0% |
CCAAGCACACAATCTGTGAT+GGG | + | chr2_3:36073587-36073606 | None:intergenic | 45.0% | |
! | TTTAGGAGAGGAAAGTACGG+GGG | - | chr2_3:36072650-36072669 | Msa0289790:CDS | 45.0% |
TTCATGTCAAGGATACAGGG+AGG | - | chr2_3:36072988-36073007 | Msa0289790:CDS | 45.0% | |
TCAAGGATACAGGGAGGATA+GGG | - | chr2_3:36072994-36073013 | Msa0289790:CDS | 45.0% | |
! | TGCTTTGTGTGGATTGCTAC+CGG | - | chr2_3:36073165-36073184 | Msa0289790:CDS | 45.0% |
! | GACATGTTTTCCGATGCATG+TGG | - | chr2_3:36073211-36073230 | Msa0289790:CDS | 45.0% |
CTTAACTGCACCACATGCAT+CGG | + | chr2_3:36073224-36073243 | None:intergenic | 45.0% | |
AGTGTCTCGCAAACATACGA+GGG | + | chr2_3:36073273-36073292 | None:intergenic | 45.0% | |
TAGTGTCTCGCAAACATACG+AGG | + | chr2_3:36073274-36073293 | None:intergenic | 45.0% | |
!! | TGGCCGTTTGTTGTGTTTCT+TGG | - | chr2_3:36073379-36073398 | Msa0289790:CDS | 45.0% |
!! | GGCCGTTTGTTGTGTTTCTT+GGG | - | chr2_3:36073380-36073399 | Msa0289790:CDS | 45.0% |
!! | GCCGTTTGTTGTGTTTCTTG+GGG | - | chr2_3:36073381-36073400 | Msa0289790:CDS | 45.0% |
!!! | CAGACCATTGTTTTTGCGAC+TGG | - | chr2_3:36073418-36073437 | Msa0289790:CDS | 45.0% |
TGCGACTGGCATAGTAATAC+GGG | - | chr2_3:36073432-36073451 | Msa0289790:intron | 45.0% | |
!! | ACAATCTGTGATGGGTTGCA+GGG | + | chr2_3:36073579-36073598 | None:intergenic | 45.0% |
CCAAGCACACAATCTGTGAT+GGG | + | chr2_3:36073587-36073606 | None:intergenic | 45.0% | |
GTCAAGGATACAGGGAGGAT+AGG | - | chr2_3:36072993-36073012 | Msa0289790:CDS | 50.0% | |
CAAGGATACAGGGAGGATAG+GGG | - | chr2_3:36072995-36073014 | Msa0289790:CDS | 50.0% | |
GGAGGATAGGGGACTAACTA+TGG | - | chr2_3:36073006-36073025 | Msa0289790:CDS | 50.0% | |
!! | TTGCTTGGTGGTGCTTTGTG+TGG | - | chr2_3:36073154-36073173 | Msa0289790:CDS | 50.0% |
CGCAAACATACGAGGGTCTT+TGG | + | chr2_3:36073266-36073285 | None:intergenic | 50.0% | |
!! | CACAATCTGTGATGGGTTGC+AGG | + | chr2_3:36073580-36073599 | None:intergenic | 50.0% |
CCCATCACAGATTGTGTGCT+TGG | - | chr2_3:36073584-36073603 | Msa0289790:CDS | 50.0% | |
GCCAAGCACACAATCTGTGA+TGG | + | chr2_3:36073588-36073607 | None:intergenic | 50.0% | |
GTCAAGGATACAGGGAGGAT+AGG | - | chr2_3:36072993-36073012 | Msa0289790:CDS | 50.0% | |
CAAGGATACAGGGAGGATAG+GGG | - | chr2_3:36072995-36073014 | Msa0289790:CDS | 50.0% | |
GGAGGATAGGGGACTAACTA+TGG | - | chr2_3:36073006-36073025 | Msa0289790:CDS | 50.0% | |
!! | TTGCTTGGTGGTGCTTTGTG+TGG | - | chr2_3:36073154-36073173 | Msa0289790:CDS | 50.0% |
CGCAAACATACGAGGGTCTT+TGG | + | chr2_3:36073266-36073285 | None:intergenic | 50.0% | |
!! | CACAATCTGTGATGGGTTGC+AGG | + | chr2_3:36073580-36073599 | None:intergenic | 50.0% |
CCCATCACAGATTGTGTGCT+TGG | - | chr2_3:36073584-36073603 | Msa0289790:CDS | 50.0% | |
GCCAAGCACACAATCTGTGA+TGG | + | chr2_3:36073588-36073607 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 36072444 | 36073648 | 36072444 | ID=Msa0289790;Name=Msa0289790 |
chr2_3 | mRNA | 36072444 | 36073648 | 36072444 | ID=Msa0289790-mRNA-1;Parent=Msa0289790;Name=Msa0289790-mRNA-1;_AED=0.26;_eAED=0.33;_QI=0|0|0|1|1|1|2|0|371 |
chr2_3 | exon | 36073527 | 36073648 | 36073527 | ID=Msa0289790-mRNA-1:exon:11850;Parent=Msa0289790-mRNA-1 |
chr2_3 | exon | 36072444 | 36073437 | 36072444 | ID=Msa0289790-mRNA-1:exon:11849;Parent=Msa0289790-mRNA-1 |
chr2_3 | CDS | 36073527 | 36073648 | 36073527 | ID=Msa0289790-mRNA-1:cds;Parent=Msa0289790-mRNA-1 |
chr2_3 | CDS | 36072444 | 36073437 | 36072444 | ID=Msa0289790-mRNA-1:cds;Parent=Msa0289790-mRNA-1 |
Gene Sequence |
Protein sequence |