Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289870 | XP_003595830.2 | 89.953 | 428 | 24 | 2 | 42 | 451 | 1 | 427 | 0.0 | 742 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289870 | sp|Q9SYJ8|SOK1_ARATH | 37.995 | 379 | 178 | 12 | 46 | 422 | 7 | 330 | 1.82e-61 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289870 | G7IQN5 | 89.953 | 428 | 24 | 2 | 42 | 451 | 1 | 427 | 0.0 | 742 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0289870 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289870 | MtrunA17_Chr2g0309101 | 89.953 | 428 | 24 | 2 | 42 | 451 | 1 | 427 | 0.0 | 742 |
| Msa0289870 | MtrunA17_Chr2g0320281 | 45.055 | 91 | 49 | 1 | 50 | 140 | 31 | 120 | 5.58e-21 | 95.5 |
| Msa0289870 | MtrunA17_Chr4g0030891 | 42.857 | 91 | 51 | 1 | 50 | 140 | 33 | 122 | 1.02e-20 | 94.0 |
| Msa0289870 | MtrunA17_Chr4g0028131 | 45.556 | 90 | 48 | 1 | 51 | 140 | 31 | 119 | 3.66e-20 | 93.2 |
| Msa0289870 | MtrunA17_Chr1g0212601 | 41.121 | 107 | 59 | 4 | 39 | 144 | 3 | 106 | 1.01e-17 | 82.8 |
| Msa0289870 | MtrunA17_Chr8g0382651 | 41.000 | 100 | 57 | 2 | 42 | 140 | 22 | 120 | 3.20e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289870 | AT1G05577.1 | 37.995 | 379 | 178 | 12 | 46 | 422 | 7 | 330 | 1.85e-62 | 207 |
| Msa0289870 | AT2G28150.1 | 46.739 | 92 | 48 | 1 | 49 | 140 | 31 | 121 | 1.72e-23 | 103 |
| Msa0289870 | AT3G46110.2 | 43.269 | 104 | 58 | 1 | 37 | 140 | 5 | 107 | 2.77e-22 | 97.4 |
| Msa0289870 | AT3G46110.1 | 43.269 | 104 | 58 | 1 | 37 | 140 | 5 | 107 | 3.43e-22 | 97.8 |
| Msa0289870 | AT5G59790.2 | 31.737 | 167 | 102 | 5 | 50 | 206 | 45 | 209 | 2.06e-21 | 95.9 |
| Msa0289870 | AT5G59790.1 | 31.737 | 167 | 102 | 5 | 50 | 206 | 45 | 209 | 2.12e-21 | 96.3 |
| Msa0289870 | AT5G10150.1 | 39.823 | 113 | 66 | 2 | 42 | 154 | 36 | 146 | 4.56e-21 | 95.5 |
| Msa0289870 | AT5G10150.2 | 39.823 | 113 | 66 | 2 | 42 | 154 | 36 | 146 | 1.20e-20 | 94.0 |
Find 70 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGACAAAGATCTCTTT+TGG | 0.288400 | 2_3:-36272684 | Msa0289870:CDS |
| CAAATCCACACTACCCCTTT+TGG | 0.310924 | 2_3:-36271486 | Msa0289870:intron |
| ATATGTGTGGCAGGATTTAA+TGG | 0.312486 | 2_3:-36271562 | Msa0289870:CDS |
| GACGTATTCATTATCAGAAA+TGG | 0.358743 | 2_3:+36271521 | None:intergenic |
| TAGGACCAAGCAAAGGATTC+AGG | 0.359159 | 2_3:+36271737 | None:intergenic |
| CAAACTTCTTATAAACCATT+TGG | 0.361784 | 2_3:-36270090 | Msa0289870:CDS |
| GGCACATTAATAGGCTCCTT+AGG | 0.392655 | 2_3:+36270697 | None:intergenic |
| ACGTATTCATTATCAGAAAT+GGG | 0.408507 | 2_3:+36271522 | None:intergenic |
| TCAGTTACTTACGAGCAAAT+TGG | 0.421789 | 2_3:+36270063 | None:intergenic |
| CAAAAGGTGGAGAAGTTAGA+AGG | 0.438816 | 2_3:-36272440 | Msa0289870:CDS |
| GCACATTAATAGGCTCCTTA+GGG | 0.443875 | 2_3:+36270698 | None:intergenic |
| GCTTCTTATCTTAGTGAATG+AGG | 0.454114 | 2_3:+36270825 | None:intergenic |
| GATTCTTCTTCTGATAAAGA+TGG | 0.455541 | 2_3:+36271192 | None:intergenic |
| TGTGGATTTGTGATCCTTTG+AGG | 0.457496 | 2_3:+36271499 | None:intergenic |
| ACTTCTTATAAACCATTTGG+TGG | 0.460136 | 2_3:-36270087 | Msa0289870:CDS |
| ATGATTCAACAACCTCTTGT+AGG | 0.473719 | 2_3:+36271718 | None:intergenic |
| AAAGATATTAAGAGATGGCT+TGG | 0.473793 | 2_3:-36271782 | Msa0289870:intron |
| GTTCTTCATCTTGCTCGAAA+CGG | 0.488480 | 2_3:-36272354 | Msa0289870:CDS |
| TGCTCAGAAAATTGCCCCTA+AGG | 0.491836 | 2_3:-36270713 | Msa0289870:CDS |
| CATGACCACCCATGTGACTA+AGG | 0.493290 | 2_3:+36272400 | None:intergenic |
| CATAATTTGATGAGTAAGAA+GGG | 0.494107 | 2_3:-36270946 | Msa0289870:CDS |
| TGATAAAGTACATACCAAAA+GGG | 0.495189 | 2_3:+36271472 | None:intergenic |
| GAGCAAATTGGTCCACCAAA+TGG | 0.501260 | 2_3:+36270075 | None:intergenic |
| ACAAGCTAGGAGGGTCAGCT+AGG | 0.501758 | 2_3:-36270645 | Msa0289870:intron |
| TCATAATTTGATGAGTAAGA+AGG | 0.513194 | 2_3:-36270947 | Msa0289870:CDS |
| CAAGAGTGGATATGTGTGGC+AGG | 0.519703 | 2_3:-36271571 | Msa0289870:CDS |
| TGTCATTGTTGAGTTTGTGT+TGG | 0.520810 | 2_3:-36272519 | Msa0289870:intron |
| AAATCAAGCATGGAAACAAA+AGG | 0.522656 | 2_3:-36272456 | Msa0289870:CDS |
| AGAAATCAGTCAGGATTCGT+TGG | 0.523001 | 2_3:-36271115 | Msa0289870:CDS |
| AGATGGCTTGGTGAAGTGAG+AGG | 0.523481 | 2_3:-36271770 | Msa0289870:CDS |
| ACCTACCTGAATCCTTTGCT+TGG | 0.529099 | 2_3:-36271742 | Msa0289870:CDS |
| AGAGATCTTTGTCTCTCTGC+CGG | 0.533661 | 2_3:+36272689 | None:intergenic |
| AATGTTATCAGAAATCAGTC+AGG | 0.538149 | 2_3:-36271124 | Msa0289870:CDS |
| GAGATGAAATAATCAAGAGC+AGG | 0.544676 | 2_3:-36270137 | Msa0289870:CDS |
| TAAGGAGCCTATTAATGTGC+CGG | 0.548310 | 2_3:-36270695 | Msa0289870:CDS |
| CTTGAAAAGATATTAAGAGA+TGG | 0.548408 | 2_3:-36271787 | Msa0289870:intron |
| ATCAAATTATGATACAAAGA+AGG | 0.549252 | 2_3:+36270958 | None:intergenic |
| TGAGACGATGTTGACGATGT+TGG | 0.555123 | 2_3:+36270856 | None:intergenic |
| AATTTACTTCCTTAGTCACA+TGG | 0.559038 | 2_3:-36272409 | Msa0289870:CDS |
| AAACACATGAAGTCTTGTAA+AGG | 0.559207 | 2_3:-36269288 | Msa0289870:CDS |
| AAGTCTTGTAAAGGAATGAA+AGG | 0.559264 | 2_3:-36269279 | Msa0289870:CDS |
| TGTAAAGGAATGAAAGGCAT+GGG | 0.564737 | 2_3:-36269273 | Msa0289870:CDS |
| AAAAGGGCTGAGATTTGTAA+AGG | 0.565816 | 2_3:-36270670 | Msa0289870:CDS |
| GATAATGAATACGTCCTCAA+AGG | 0.574396 | 2_3:-36271513 | Msa0289870:CDS |
| ATTTGTAAAGGAGACAAGCT+AGG | 0.576650 | 2_3:-36270658 | Msa0289870:CDS |
| CGTATTCATTATCAGAAATG+GGG | 0.578739 | 2_3:+36271523 | None:intergenic |
| CCTTTGCTTGGTCCTACAAG+AGG | 0.578853 | 2_3:-36271730 | Msa0289870:intron |
| ACATACCAAAAGGGGTAGTG+TGG | 0.583512 | 2_3:+36271481 | None:intergenic |
| TGAAGTTGTACAAGTTGAAG+AGG | 0.587754 | 2_3:-36271238 | Msa0289870:CDS |
| TTGTAAAGGAATGAAAGGCA+TGG | 0.590138 | 2_3:-36269274 | Msa0289870:CDS |
| GTTGATGATGCAGGCAATGT+GGG | 0.595370 | 2_3:-36269338 | Msa0289870:intron |
| GTAAAGGAGACAAGCTAGGA+GGG | 0.602767 | 2_3:-36270654 | Msa0289870:CDS |
| AAGTTCATCAAAATCAAGCA+TGG | 0.603008 | 2_3:-36272466 | Msa0289870:CDS |
| GATAAAGTACATACCAAAAG+GGG | 0.611244 | 2_3:+36271473 | None:intergenic |
| AAGCTGTGTTTCCTCAGCAA+TGG | 0.615582 | 2_3:+36269236 | None:intergenic |
| ATTTACTTCCTTAGTCACAT+GGG | 0.617781 | 2_3:-36272408 | Msa0289870:CDS |
| CACATTAATAGGCTCCTTAG+GGG | 0.618248 | 2_3:+36270699 | None:intergenic |
| TACTTCCTTAGTCACATGGG+TGG | 0.620447 | 2_3:-36272405 | Msa0289870:CDS |
| TCAAGCATGGAAACAAAAGG+TGG | 0.631710 | 2_3:-36272453 | Msa0289870:CDS |
| TGAAGAACACGAATGAGATG+AGG | 0.633710 | 2_3:+36272369 | None:intergenic |
| AACTATAGGAGGTACAAGAG+TGG | 0.640091 | 2_3:-36271585 | Msa0289870:intron |
| GTATTCATTATCAGAAATGG+GGG | 0.640428 | 2_3:+36271524 | None:intergenic |
| TGTAAAGGAGACAAGCTAGG+AGG | 0.643651 | 2_3:-36270655 | Msa0289870:CDS |
| TTCAGCTACAACCATTGCTG+AGG | 0.657539 | 2_3:-36269247 | Msa0289870:CDS |
| TTGGATTGGTTGTGGAACTG+TGG | 0.657832 | 2_3:-36270770 | Msa0289870:CDS |
| CGAAACGGTGTTTATCTCAG+AGG | 0.661351 | 2_3:-36272339 | Msa0289870:intron |
| ACCAAGCAAAGGATTCAGGT+AGG | 0.685603 | 2_3:+36271741 | None:intergenic |
| GGTACAAGAGTGGATATGTG+TGG | 0.687025 | 2_3:-36271575 | Msa0289870:CDS |
| AGTTGATGATGCAGGCAATG+TGG | 0.692418 | 2_3:-36269339 | Msa0289870:intron |
| CCTCTTGTAGGACCAAGCAA+AGG | 0.696251 | 2_3:+36271730 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTGAATAAATAAAAAT+GGG | + | chr2_3:36270473-36270492 | None:intergenic | 10.0% |
| !! | TTAATGTGAATAAATAAAAA+TGG | + | chr2_3:36270474-36270493 | None:intergenic | 10.0% |
| !! | TATAATTATTTGAATCATAG+TGG | - | chr2_3:36269281-36269300 | Msa0289870:CDS | 15.0% |
| !! | AAAATTACATAATAAGGTAA+TGG | + | chr2_3:36270537-36270556 | None:intergenic | 15.0% |
| !! | TTAGCAAAAATTACATAATA+AGG | + | chr2_3:36270543-36270562 | None:intergenic | 15.0% |
| !! | TAATTAAAACATTATTTGGT+TGG | - | chr2_3:36271689-36271708 | Msa0289870:intron | 15.0% |
| !! | GAACAAATTGAATGAAAATA+TGG | + | chr2_3:36269610-36269629 | None:intergenic | 20.0% |
| !! | CAAGGAAATAATGATTAATA+AGG | + | chr2_3:36270215-36270234 | None:intergenic | 20.0% |
| !! | AGTTAAAGGTTAAAAAAATG+AGG | + | chr2_3:36270257-36270276 | None:intergenic | 20.0% |
| !! | GGAAATACATATATAGTTAA+AGG | + | chr2_3:36270271-36270290 | None:intergenic | 20.0% |
| !! | TTAGTTGCAAAAATTGATTA+TGG | + | chr2_3:36270292-36270311 | None:intergenic | 20.0% |
| !! | ACTAACAATTATTGAACTAT+AGG | - | chr2_3:36270307-36270326 | Msa0289870:intron | 20.0% |
| !!! | TCACATTAATATTTTGAGTA+TGG | - | chr2_3:36270485-36270504 | Msa0289870:intron | 20.0% |
| !! | ATCAAATTATGATACAAAGA+AGG | + | chr2_3:36270951-36270970 | None:intergenic | 20.0% |
| !! | ATTCAAAACCATGTTTAAAA+GGG | + | chr2_3:36271543-36271562 | None:intergenic | 20.0% |
| !!! | ATGAAAATTTTTGGTCTTAT+AGG | - | chr2_3:36271929-36271948 | Msa0289870:intron | 20.0% |
| !!! | CCATTTTTTCAACTTAATAA+TGG | + | chr2_3:36272048-36272067 | None:intergenic | 20.0% |
| !!! | CCATTATTAAGTTGAAAAAA+TGG | - | chr2_3:36272045-36272064 | Msa0289870:intron | 20.0% |
| ! | CTTGAAAAGATATTAAGAGA+TGG | - | chr2_3:36270119-36270138 | Msa0289870:CDS | 25.0% |
| ! | AAAAAATGAGGTTGAGAAAA+TGG | + | chr2_3:36270245-36270264 | None:intergenic | 25.0% |
| ! | AACAATTATTGAACTATAGG+AGG | - | chr2_3:36270310-36270329 | Msa0289870:intron | 25.0% |
| ! | ACGTATTCATTATCAGAAAT+GGG | + | chr2_3:36270387-36270406 | None:intergenic | 25.0% |
| ! | TGATAAAGTACATACCAAAA+GGG | + | chr2_3:36270437-36270456 | None:intergenic | 25.0% |
| ! | ATGATAAAGTACATACCAAA+AGG | + | chr2_3:36270438-36270457 | None:intergenic | 25.0% |
| ! | TCATAATTTGATGAGTAAGA+AGG | - | chr2_3:36270959-36270978 | Msa0289870:CDS | 25.0% |
| ! | CATAATTTGATGAGTAAGAA+GGG | - | chr2_3:36270960-36270979 | Msa0289870:CDS | 25.0% |
| ! | CATGATCAAAATGAACATTA+TGG | - | chr2_3:36271308-36271327 | Msa0289870:intron | 25.0% |
| ! | GATTATGAATATTCTAAGCA+TGG | + | chr2_3:36271516-36271535 | None:intergenic | 25.0% |
| ! | GATTCAAAACCATGTTTAAA+AGG | + | chr2_3:36271544-36271563 | None:intergenic | 25.0% |
| !!! | TTTTAAGAATGGCTTTTAAC+AGG | + | chr2_3:36271566-36271585 | None:intergenic | 25.0% |
| ! | TGTTAAAAGCCATTCTTAAA+AGG | - | chr2_3:36271565-36271584 | Msa0289870:CDS | 25.0% |
| ! | GTTAAAAGCCATTCTTAAAA+GGG | - | chr2_3:36271566-36271585 | Msa0289870:CDS | 25.0% |
| ! | CAAACTTCTTATAAACCATT+TGG | - | chr2_3:36271816-36271835 | Msa0289870:intron | 25.0% |
| ! | TTGAGTAAACTTCAATTGTT+TGG | - | chr2_3:36271873-36271892 | Msa0289870:intron | 25.0% |
| ! | GATTTCAACTATGAAATGTT+AGG | - | chr2_3:36271895-36271914 | Msa0289870:intron | 25.0% |
| !! | AAACTGTGCATGAAAATTTT+TGG | - | chr2_3:36271920-36271939 | Msa0289870:intron | 25.0% |
| !!! | AAAATTTTTGGTCTTATAGG+TGG | - | chr2_3:36271932-36271951 | Msa0289870:intron | 25.0% |
| !!! | TTAAGTTGAAAAAATGGAAG+TGG | - | chr2_3:36272051-36272070 | Msa0289870:intron | 25.0% |
| ! | TAATGTGTCTTTACACATAT+GGG | + | chr2_3:36272499-36272518 | None:intergenic | 25.0% |
| ! | TTAATGTGTCTTTACACATA+TGG | + | chr2_3:36272500-36272519 | None:intergenic | 25.0% |
| ACTAAGAGAAACAACTAACA+TGG | + | chr2_3:36269254-36269273 | None:intergenic | 30.0% | |
| !! | TCAAAAGAAGTGTCATTGTT+TGG | - | chr2_3:36269358-36269377 | Msa0289870:intron | 30.0% |
| AAGTTCATCAAAATCAAGCA+TGG | - | chr2_3:36269440-36269459 | Msa0289870:intron | 30.0% | |
| AAATCAAGCATGGAAACAAA+AGG | - | chr2_3:36269450-36269469 | Msa0289870:intron | 30.0% | |
| AATTTACTTCCTTAGTCACA+TGG | - | chr2_3:36269497-36269516 | Msa0289870:intron | 30.0% | |
| ATTTACTTCCTTAGTCACAT+GGG | - | chr2_3:36269498-36269517 | Msa0289870:intron | 30.0% | |
| ! | TCATTCAATTTGTTCTCTAC+TGG | - | chr2_3:36269615-36269634 | Msa0289870:intron | 30.0% |
| TTGCACATAGTTCAAAATTG+CGG | - | chr2_3:36269706-36269725 | Msa0289870:intron | 30.0% | |
| !! | CCTCTAAAACCTTTATATTG+CGG | + | chr2_3:36269739-36269758 | None:intergenic | 30.0% |
| GTGTACTAAATTGTGTATCA+CGG | + | chr2_3:36269943-36269962 | None:intergenic | 30.0% | |
| AATTGCAGATCATAGACAAT+AGG | + | chr2_3:36270009-36270028 | None:intergenic | 30.0% | |
| AAAGATATTAAGAGATGGCT+TGG | - | chr2_3:36270124-36270143 | Msa0289870:CDS | 30.0% | |
| GTATTCATTATCAGAAATGG+GGG | + | chr2_3:36270385-36270404 | None:intergenic | 30.0% | |
| CGTATTCATTATCAGAAATG+GGG | + | chr2_3:36270386-36270405 | None:intergenic | 30.0% | |
| GACGTATTCATTATCAGAAA+TGG | + | chr2_3:36270388-36270407 | None:intergenic | 30.0% | |
| GATAAAGTACATACCAAAAG+GGG | + | chr2_3:36270436-36270455 | None:intergenic | 30.0% | |
| TAGTTTCTGCATTAGTACAA+AGG | + | chr2_3:36270605-36270624 | None:intergenic | 30.0% | |
| GATTCTTCTTCTGATAAAGA+TGG | + | chr2_3:36270717-36270736 | None:intergenic | 30.0% | |
| AATGTTATCAGAAATCAGTC+AGG | - | chr2_3:36270782-36270801 | Msa0289870:CDS | 30.0% | |
| ! | TTGAAGAAGAGAAGCTTTTA+GGG | - | chr2_3:36270865-36270884 | Msa0289870:CDS | 30.0% |
| AGTAAGAAGGGTAAAAAAGA+TGG | - | chr2_3:36270972-36270991 | Msa0289870:CDS | 30.0% | |
| TGACTAGTGTGTTCAAAAAT+TGG | - | chr2_3:36271117-36271136 | Msa0289870:CDS | 30.0% | |
| AGTGTGTTCAAAAATTGGAT+TGG | - | chr2_3:36271122-36271141 | Msa0289870:CDS | 30.0% | |
| !! | TTCAAAAATTGGATTGGTTG+TGG | - | chr2_3:36271128-36271147 | Msa0289870:CDS | 30.0% |
| TATTAATGTGCCGGAAAAAA+GGG | - | chr2_3:36271220-36271239 | Msa0289870:CDS | 30.0% | |
| TTATGATACAATTTCTCACC+TGG | + | chr2_3:36271336-36271355 | None:intergenic | 30.0% | |
| AATCCAATGCTACTATGATT+GGG | - | chr2_3:36271597-36271616 | Msa0289870:intron | 30.0% | |
| ! | TTTTACAGAAAAAGCTGTGA+TGG | - | chr2_3:36271747-36271766 | Msa0289870:CDS | 30.0% |
| ACTTCTTATAAACCATTTGG+TGG | - | chr2_3:36271819-36271838 | Msa0289870:intron | 30.0% | |
| TTATGATGTTTACCAACTCT+TGG | - | chr2_3:36272381-36272400 | Msa0289870:CDS | 30.0% | |
| GCATCATCAACTACTATTTA+TGG | + | chr2_3:36272559-36272578 | None:intergenic | 30.0% | |
| !! | TAAATAGTAGTTGATGATGC+AGG | - | chr2_3:36272559-36272578 | Msa0289870:intron | 30.0% |
| ! | AAACACATGAAGTCTTGTAA+AGG | - | chr2_3:36272618-36272637 | Msa0289870:intron | 30.0% |
| ! | AAGTCTTGTAAAGGAATGAA+AGG | - | chr2_3:36272627-36272646 | Msa0289870:intron | 30.0% |
| ! | AGAGAGACAAAGATCTCTTT+TGG | - | chr2_3:36269222-36269241 | Msa0289870:CDS | 35.0% |
| ! | GAGAGACAAAGATCTCTTTT+GGG | - | chr2_3:36269223-36269242 | Msa0289870:CDS | 35.0% |
| !!! | GACACTTCTTTTGAAACACA+AGG | + | chr2_3:36269352-36269371 | None:intergenic | 35.0% |
| !! | GAAGTGTCATTGTTTGGTTT+TGG | - | chr2_3:36269364-36269383 | Msa0289870:intron | 35.0% |
| TGTCATTGTTGAGTTTGTGT+TGG | - | chr2_3:36269387-36269406 | Msa0289870:intron | 35.0% | |
| !! | CCGCAATATAAAGGTTTTAG+AGG | - | chr2_3:36269736-36269755 | Msa0289870:intron | 35.0% |
| ATGATTCAACAACCTCTTGT+AGG | + | chr2_3:36270191-36270210 | None:intergenic | 35.0% | |
| !! | TGAGAAAATGGACTAAAGCA+AGG | + | chr2_3:36270233-36270252 | None:intergenic | 35.0% |
| ATATGTGTGGCAGGATTTAA+TGG | - | chr2_3:36270344-36270363 | Msa0289870:intron | 35.0% | |
| GATAATGAATACGTCCTCAA+AGG | - | chr2_3:36270393-36270412 | Msa0289870:intron | 35.0% | |
| ! | TGAAGTTGTACAAGTTGAAG+AGG | - | chr2_3:36270668-36270687 | Msa0289870:CDS | 35.0% |
| ! | GTTGAAGAAGAGAAGCTTTT+AGG | - | chr2_3:36270864-36270883 | Msa0289870:CDS | 35.0% |
| !! | CTTTTAGGGAATGGAAAAGA+AGG | - | chr2_3:36270879-36270898 | Msa0289870:CDS | 35.0% |
| GTAGAAAAAGTTGAATCAGG+AGG | + | chr2_3:36271029-36271048 | None:intergenic | 35.0% | |
| GGAGTAGAAAAAGTTGAATC+AGG | + | chr2_3:36271032-36271051 | None:intergenic | 35.0% | |
| GCTTCTTATCTTAGTGAATG+AGG | + | chr2_3:36271084-36271103 | None:intergenic | 35.0% | |
| !!! | CTTTTTTCCGGCACATTAAT+AGG | + | chr2_3:36271221-36271240 | None:intergenic | 35.0% |
| CTATTAATGTGCCGGAAAAA+AGG | - | chr2_3:36271219-36271238 | Msa0289870:CDS | 35.0% | |
| AAAAGGGCTGAGATTTGTAA+AGG | - | chr2_3:36271236-36271255 | Msa0289870:CDS | 35.0% | |
| ATTTGTAAAGGAGACAAGCT+AGG | - | chr2_3:36271248-36271267 | Msa0289870:CDS | 35.0% | |
| AAAATGAACATTATGGAGCC+AGG | - | chr2_3:36271315-36271334 | Msa0289870:intron | 35.0% | |
| CAACTGCATACGCAATTTAA+AGG | + | chr2_3:36271377-36271396 | None:intergenic | 35.0% | |
| TTAAATTGCGTATGCAGTTG+CGG | - | chr2_3:36271377-36271396 | Msa0289870:intron | 35.0% | |
| ! | AATCGTGACCCTTTTAAACA+TGG | - | chr2_3:36271532-36271551 | Msa0289870:CDS | 35.0% |
| !! | CACAAACACCCTTTTAAGAA+TGG | + | chr2_3:36271577-36271596 | None:intergenic | 35.0% |
| GAATCCAATGCTACTATGAT+TGG | - | chr2_3:36271596-36271615 | Msa0289870:intron | 35.0% | |
| TAACCCAATCATAGTAGCAT+TGG | + | chr2_3:36271603-36271622 | None:intergenic | 35.0% | |
| TACATTAGACATACGTCACT+AGG | - | chr2_3:36271627-36271646 | Msa0289870:intron | 35.0% | |
| GAGATGAAATAATCAAGAGC+AGG | - | chr2_3:36271769-36271788 | Msa0289870:CDS | 35.0% | |
| TCAGTTACTTACGAGCAAAT+TGG | + | chr2_3:36271846-36271865 | None:intergenic | 35.0% | |
| CGTGTCTATCAATGTTTGAT+AGG | + | chr2_3:36272002-36272021 | None:intergenic | 35.0% | |
| GTGTTGTCAATATCAGACAT+TGG | - | chr2_3:36272096-36272115 | Msa0289870:intron | 35.0% | |
| TTCCAACAGAAAAGCCAATA+AGG | - | chr2_3:36272258-36272277 | Msa0289870:intron | 35.0% | |
| ! | ATGTGTTTGTGCATTTTCTC+AGG | + | chr2_3:36272606-36272625 | None:intergenic | 35.0% |
| TTGTAAAGGAATGAAAGGCA+TGG | - | chr2_3:36272632-36272651 | Msa0289870:intron | 35.0% | |
| ! | TGTAAAGGAATGAAAGGCAT+GGG | - | chr2_3:36272633-36272652 | Msa0289870:intron | 35.0% |
| TCAAGCATGGAAACAAAAGG+TGG | - | chr2_3:36269453-36269472 | Msa0289870:intron | 40.0% | |
| CAAAAGGTGGAGAAGTTAGA+AGG | - | chr2_3:36269466-36269485 | Msa0289870:intron | 40.0% | |
| TGAAGAACACGAATGAGATG+AGG | + | chr2_3:36269540-36269559 | None:intergenic | 40.0% | |
| GTTCTTCATCTTGCTCGAAA+CGG | - | chr2_3:36269552-36269571 | Msa0289870:intron | 40.0% | |
| GGTACACAACCGCAATATAA+AGG | - | chr2_3:36269727-36269746 | Msa0289870:intron | 40.0% | |
| ACTATGCTGTCACAATTGCT+TGG | - | chr2_3:36269800-36269819 | Msa0289870:intron | 40.0% | |
| ! | AACTATAGGAGGTACAAGAG+TGG | - | chr2_3:36270321-36270340 | Msa0289870:intron | 40.0% |
| TATCAGAAATGGGGGTTATG+AGG | + | chr2_3:36270377-36270396 | None:intergenic | 40.0% | |
| TGTGGATTTGTGATCCTTTG+AGG | + | chr2_3:36270410-36270429 | None:intergenic | 40.0% | |
| AGAAATCAGTCAGGATTCGT+TGG | - | chr2_3:36270791-36270810 | Msa0289870:CDS | 40.0% | |
| !!! | GGATTCGTTGGTTTTTAGCT+CGG | - | chr2_3:36270803-36270822 | Msa0289870:CDS | 40.0% |
| !! | GAAGAGAAGCTTTTAGGGAA+TGG | - | chr2_3:36270870-36270889 | Msa0289870:CDS | 40.0% |
| CACATTAATAGGCTCCTTAG+GGG | + | chr2_3:36271210-36271229 | None:intergenic | 40.0% | |
| GCACATTAATAGGCTCCTTA+GGG | + | chr2_3:36271211-36271230 | None:intergenic | 40.0% | |
| TAAGGAGCCTATTAATGTGC+CGG | - | chr2_3:36271211-36271230 | Msa0289870:CDS | 40.0% | |
| !!! | CAAATCTCAGCCCTTTTTTC+CGG | + | chr2_3:36271233-36271252 | None:intergenic | 40.0% |
| TTACACTGTGAACCAAACTG+TGG | - | chr2_3:36271400-36271419 | Msa0289870:intron | 40.0% | |
| CCACAATACAAACCATTTCG+AGG | + | chr2_3:36271466-36271485 | None:intergenic | 40.0% | |
| ! | CCTCGAAATGGTTTGTATTG+TGG | - | chr2_3:36271463-36271482 | Msa0289870:intron | 40.0% |
| AACACTAACACACACTGACA+CGG | - | chr2_3:36272128-36272147 | Msa0289870:intron | 40.0% | |
| !! | CTAAAGTGTCGAAGCTACTT+AGG | - | chr2_3:36272164-36272183 | Msa0289870:intron | 40.0% |
| !!! | GACCTTATTGGCTTTTCTGT+TGG | + | chr2_3:36272263-36272282 | None:intergenic | 40.0% |
| CAGCAGAATCTTGACCTTAT+TGG | + | chr2_3:36272275-36272294 | None:intergenic | 40.0% | |
| CAATAAGGTCAAGATTCTGC+TGG | - | chr2_3:36272273-36272292 | Msa0289870:intron | 40.0% | |
| TTTACCAACTCTTGGTTGCA+TGG | - | chr2_3:36272389-36272408 | Msa0289870:CDS | 40.0% | |
| TTACCAACTCTTGGTTGCAT+GGG | - | chr2_3:36272390-36272409 | Msa0289870:CDS | 40.0% | |
| ! | CAGTTCTTTTAGCAGCATGC+CGG | - | chr2_3:36269198-36269217 | Msa0289870:CDS | 45.0% |
| AGAGATCTTTGTCTCTCTGC+CGG | + | chr2_3:36269220-36269239 | None:intergenic | 45.0% | |
| TACTTCCTTAGTCACATGGG+TGG | - | chr2_3:36269501-36269520 | Msa0289870:intron | 45.0% | |
| CGAAACGGTGTTTATCTCAG+AGG | - | chr2_3:36269567-36269586 | Msa0289870:intron | 45.0% | |
| !! | TTCTCTACTGGCTCTGATCT+AGG | - | chr2_3:36269627-36269646 | Msa0289870:intron | 45.0% |
| ACCTACCTGAATCCTTTGCT+TGG | - | chr2_3:36270164-36270183 | Msa0289870:intron | 45.0% | |
| ACCAAGCAAAGGATTCAGGT+AGG | + | chr2_3:36270168-36270187 | None:intergenic | 45.0% | |
| TAGGACCAAGCAAAGGATTC+AGG | + | chr2_3:36270172-36270191 | None:intergenic | 45.0% | |
| GGTACAAGAGTGGATATGTG+TGG | - | chr2_3:36270331-36270350 | Msa0289870:intron | 45.0% | |
| ! | CAAATCCACACTACCCCTTT+TGG | - | chr2_3:36270420-36270439 | Msa0289870:intron | 45.0% |
| ACATACCAAAAGGGGTAGTG+TGG | + | chr2_3:36270428-36270447 | None:intergenic | 45.0% | |
| !!! | TTTTAGCTCGGACAGGTCAT+CGG | - | chr2_3:36270815-36270834 | Msa0289870:CDS | 45.0% |
| TGAGACGATGTTGACGATGT+TGG | + | chr2_3:36271053-36271072 | None:intergenic | 45.0% | |
| !! | TTGGATTGGTTGTGGAACTG+TGG | - | chr2_3:36271136-36271155 | Msa0289870:CDS | 45.0% |
| ! | TAGGGGCAATTTTCTGAGCA+GGG | + | chr2_3:36271193-36271212 | None:intergenic | 45.0% |
| ! | TTAGGGGCAATTTTCTGAGC+AGG | + | chr2_3:36271194-36271213 | None:intergenic | 45.0% |
| TGCTCAGAAAATTGCCCCTA+AGG | - | chr2_3:36271193-36271212 | Msa0289870:CDS | 45.0% | |
| GGCACATTAATAGGCTCCTT+AGG | + | chr2_3:36271212-36271231 | None:intergenic | 45.0% | |
| TGTAAAGGAGACAAGCTAGG+AGG | - | chr2_3:36271251-36271270 | Msa0289870:CDS | 45.0% | |
| GTAAAGGAGACAAGCTAGGA+GGG | - | chr2_3:36271252-36271271 | Msa0289870:CDS | 45.0% | |
| CAATTGCATCAGCCACAGTT+TGG | + | chr2_3:36271415-36271434 | None:intergenic | 45.0% | |
| GCAACTGTATTCTGTTGCAG+AGG | - | chr2_3:36271440-36271459 | Msa0289870:intron | 45.0% | |
| GAGCAAATTGGTCCACCAAA+TGG | + | chr2_3:36271834-36271853 | None:intergenic | 45.0% | |
| !! | AGTTGATGATGCAGGCAATG+TGG | - | chr2_3:36272567-36272586 | Msa0289870:intron | 45.0% |
| !! | GTTGATGATGCAGGCAATGT+GGG | - | chr2_3:36272568-36272587 | Msa0289870:intron | 45.0% |
| TTCAGCTACAACCATTGCTG+AGG | - | chr2_3:36272659-36272678 | Msa0289870:intron | 45.0% | |
| AAGCTGTGTTTCCTCAGCAA+TGG | + | chr2_3:36272673-36272692 | None:intergenic | 45.0% | |
| !! | ATATATATATAATTAACAAA+AGG | - | chr2_3:36269309-36269328 | Msa0289870:CDS | 5.0% |
| !! | TATATATATAATTAACAAAA+GGG | - | chr2_3:36269310-36269329 | Msa0289870:CDS | 5.0% |
| !! | AATTTAATTAAAACATTATT+TGG | - | chr2_3:36271685-36271704 | Msa0289870:intron | 5.0% |
| CATGACCACCCATGTGACTA+AGG | + | chr2_3:36269509-36269528 | None:intergenic | 50.0% | |
| !! | AGATGGCTTGGTGAAGTGAG+AGG | - | chr2_3:36270136-36270155 | Msa0289870:CDS | 50.0% |
| CCTCTTGTAGGACCAAGCAA+AGG | + | chr2_3:36270179-36270198 | None:intergenic | 50.0% | |
| CCTTTGCTTGGTCCTACAAG+AGG | - | chr2_3:36270176-36270195 | Msa0289870:intron | 50.0% | |
| CAAGAGTGGATATGTGTGGC+AGG | - | chr2_3:36270335-36270354 | Msa0289870:intron | 50.0% | |
| !!! | CGTTGGTTTTTAGCTCGGAC+AGG | - | chr2_3:36270808-36270827 | Msa0289870:CDS | 50.0% |
| CGACACCGATACTTACACGT+AGG | - | chr2_3:36272020-36272039 | Msa0289870:intron | 50.0% | |
| TGGCGCCTACGTGTAAGTAT+CGG | + | chr2_3:36272028-36272047 | None:intergenic | 50.0% | |
| TAGCCCATGCAACCAAGAGT+TGG | + | chr2_3:36272396-36272415 | None:intergenic | 50.0% | |
| ACAAGCTAGGAGGGTCAGCT+AGG | - | chr2_3:36271261-36271280 | Msa0289870:CDS | 55.0% | |
| GAGGGTCAGCTAGGTGCTTT+GGG | - | chr2_3:36271270-36271289 | Msa0289870:CDS | 55.0% | |
| !! | CTAGGTGCTTTGGGACTGCT+TGG | - | chr2_3:36271279-36271298 | Msa0289870:CDS | 55.0% |
| CTGTTGCAGAGGCCTCGAAA+TGG | - | chr2_3:36271451-36271470 | Msa0289870:intron | 55.0% | |
| GGAGGGTCAGCTAGGTGCTT+TGG | - | chr2_3:36271269-36271288 | Msa0289870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 36269191 | 36272737 | 36269191 | ID=Msa0289870;Name=Msa0289870 |
| chr2_3 | mRNA | 36269191 | 36272737 | 36269191 | ID=Msa0289870-mRNA-1;Parent=Msa0289870;Name=Msa0289870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.83|0.85|7|0|451 |
| chr2_3 | exon | 36272674 | 36272737 | 36272674 | ID=Msa0289870-mRNA-1:exon:11925;Parent=Msa0289870-mRNA-1 |
| chr2_3 | exon | 36272340 | 36272528 | 36272340 | ID=Msa0289870-mRNA-1:exon:11924;Parent=Msa0289870-mRNA-1 |
| chr2_3 | exon | 36271731 | 36271800 | 36271731 | ID=Msa0289870-mRNA-1:exon:11923;Parent=Msa0289870-mRNA-1 |
| chr2_3 | exon | 36271487 | 36271599 | 36271487 | ID=Msa0289870-mRNA-1:exon:11922;Parent=Msa0289870-mRNA-1 |
| chr2_3 | exon | 36270646 | 36271309 | 36270646 | ID=Msa0289870-mRNA-1:exon:11921;Parent=Msa0289870-mRNA-1 |
| chr2_3 | exon | 36270075 | 36270173 | 36270075 | ID=Msa0289870-mRNA-1:exon:11920;Parent=Msa0289870-mRNA-1 |
| chr2_3 | exon | 36269191 | 36269347 | 36269191 | ID=Msa0289870-mRNA-1:exon:11919;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36272674 | 36272737 | 36272674 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36272340 | 36272528 | 36272340 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36271731 | 36271800 | 36271731 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36271487 | 36271599 | 36271487 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36270646 | 36271309 | 36270646 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36270075 | 36270173 | 36270075 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| chr2_3 | CDS | 36269191 | 36269347 | 36269191 | ID=Msa0289870-mRNA-1:cds;Parent=Msa0289870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
