AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290140


Find 313 sgRNAs with CRISPR-Local

Find 1229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr2_3 gene 36783949 36801767 36783949 ID=Msa0290140;Name=Msa0290140
chr2_3 mRNA 36783949 36801767 36783949 ID=Msa0290140-mRNA-1;Parent=Msa0290140;Name=Msa0290140-mRNA-1;_AED=0.11;_eAED=0.11;_QI=47|0.93|0.93|1|1|1|33|489|1185
chr2_3 exon 36783949 36784469 36783949 ID=Msa0290140-mRNA-1:exon:12112;Parent=Msa0290140-mRNA-1
chr2_3 exon 36785493 36785604 36785493 ID=Msa0290140-mRNA-1:exon:12111;Parent=Msa0290140-mRNA-1
chr2_3 exon 36786233 36786361 36786233 ID=Msa0290140-mRNA-1:exon:12110;Parent=Msa0290140-mRNA-1
chr2_3 exon 36787020 36787122 36787020 ID=Msa0290140-mRNA-1:exon:12109;Parent=Msa0290140-mRNA-1
chr2_3 exon 36787192 36787245 36787192 ID=Msa0290140-mRNA-1:exon:12108;Parent=Msa0290140-mRNA-1
chr2_3 exon 36788200 36788318 36788200 ID=Msa0290140-mRNA-1:exon:12107;Parent=Msa0290140-mRNA-1
chr2_3 exon 36788401 36788478 36788401 ID=Msa0290140-mRNA-1:exon:12106;Parent=Msa0290140-mRNA-1
chr2_3 exon 36788574 36788697 36788574 ID=Msa0290140-mRNA-1:exon:12105;Parent=Msa0290140-mRNA-1
chr2_3 exon 36788779 36788881 36788779 ID=Msa0290140-mRNA-1:exon:12104;Parent=Msa0290140-mRNA-1
chr2_3 exon 36789049 36789169 36789049 ID=Msa0290140-mRNA-1:exon:12103;Parent=Msa0290140-mRNA-1
chr2_3 exon 36789275 36789362 36789275 ID=Msa0290140-mRNA-1:exon:12102;Parent=Msa0290140-mRNA-1
chr2_3 exon 36789451 36789546 36789451 ID=Msa0290140-mRNA-1:exon:12101;Parent=Msa0290140-mRNA-1
chr2_3 exon 36791510 36791568 36791510 ID=Msa0290140-mRNA-1:exon:12100;Parent=Msa0290140-mRNA-1
chr2_3 exon 36791737 36791872 36791737 ID=Msa0290140-mRNA-1:exon:12099;Parent=Msa0290140-mRNA-1
chr2_3 exon 36791952 36792049 36791952 ID=Msa0290140-mRNA-1:exon:12098;Parent=Msa0290140-mRNA-1
chr2_3 exon 36792282 36792375 36792282 ID=Msa0290140-mRNA-1:exon:12097;Parent=Msa0290140-mRNA-1
chr2_3 exon 36792559 36792728 36792559 ID=Msa0290140-mRNA-1:exon:12096;Parent=Msa0290140-mRNA-1
chr2_3 exon 36792815 36792888 36792815 ID=Msa0290140-mRNA-1:exon:12095;Parent=Msa0290140-mRNA-1
chr2_3 exon 36793361 36793417 36793361 ID=Msa0290140-mRNA-1:exon:12094;Parent=Msa0290140-mRNA-1
chr2_3 exon 36794296 36794427 36794296 ID=Msa0290140-mRNA-1:exon:12093;Parent=Msa0290140-mRNA-1
chr2_3 exon 36794519 36794618 36794519 ID=Msa0290140-mRNA-1:exon:12092;Parent=Msa0290140-mRNA-1
chr2_3 exon 36794715 36794858 36794715 ID=Msa0290140-mRNA-1:exon:12091;Parent=Msa0290140-mRNA-1
chr2_3 exon 36794963 36795088 36794963 ID=Msa0290140-mRNA-1:exon:12090;Parent=Msa0290140-mRNA-1
chr2_3 exon 36795813 36795894 36795813 ID=Msa0290140-mRNA-1:exon:12089;Parent=Msa0290140-mRNA-1
chr2_3 exon 36795990 36796050 36795990 ID=Msa0290140-mRNA-1:exon:12088;Parent=Msa0290140-mRNA-1
chr2_3 exon 36797849 36797981 36797849 ID=Msa0290140-mRNA-1:exon:12087;Parent=Msa0290140-mRNA-1
chr2_3 exon 36798077 36798154 36798077 ID=Msa0290140-mRNA-1:exon:12086;Parent=Msa0290140-mRNA-1
chr2_3 exon 36798436 36798569 36798436 ID=Msa0290140-mRNA-1:exon:12085;Parent=Msa0290140-mRNA-1
chr2_3 exon 36799462 36799538 36799462 ID=Msa0290140-mRNA-1:exon:12084;Parent=Msa0290140-mRNA-1
chr2_3 exon 36799709 36799839 36799709 ID=Msa0290140-mRNA-1:exon:12083;Parent=Msa0290140-mRNA-1
chr2_3 exon 36799924 36800097 36799924 ID=Msa0290140-mRNA-1:exon:12082;Parent=Msa0290140-mRNA-1
chr2_3 exon 36800198 36800263 36800198 ID=Msa0290140-mRNA-1:exon:12081;Parent=Msa0290140-mRNA-1
chr2_3 exon 36801448 36801767 36801448 ID=Msa0290140-mRNA-1:exon:12080;Parent=Msa0290140-mRNA-1
chr2_3 five_prime_UTR 36801721 36801767 36801721 ID=Msa0290140-mRNA-1:five_prime_utr;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36801448 36801720 36801448 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36800198 36800263 36800198 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36799924 36800097 36799924 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36799709 36799839 36799709 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36799462 36799538 36799462 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36798436 36798569 36798436 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36798077 36798154 36798077 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36797849 36797981 36797849 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36795990 36796050 36795990 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36795813 36795894 36795813 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36794963 36795088 36794963 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36794715 36794858 36794715 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36794519 36794618 36794519 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36794296 36794427 36794296 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36793361 36793417 36793361 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36792815 36792888 36792815 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36792559 36792728 36792559 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36792282 36792375 36792282 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36791952 36792049 36791952 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36791737 36791872 36791737 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36791510 36791568 36791510 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36789451 36789546 36789451 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36789275 36789362 36789275 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36789049 36789169 36789049 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36788779 36788881 36788779 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36788574 36788697 36788574 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36788401 36788478 36788401 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36788200 36788318 36788200 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36787192 36787245 36787192 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36787020 36787122 36787020 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36786233 36786361 36786233 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36785493 36785604 36785493 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 CDS 36784438 36784469 36784438 ID=Msa0290140-mRNA-1:cds;Parent=Msa0290140-mRNA-1
chr2_3 three_prime_UTR 36783949 36784437 36783949 ID=Msa0290140-mRNA-1:three_prime_utr;Parent=Msa0290140-mRNA-1
Gene Sequence

>Msa0290140

ATGCATCGCCAACCGCAACCACCACCACCTTCAACCGCACGCGCGCGTTGCGCCGGTTGCCGGACCTACTTCTCCGCCGCTCAAGGTGTGGCGGAGTTACCTTGTCCGAAGTGTCAAATGCCGCATGTGTTCTTCGTCGACTCATCTGCAGTGAAAATCCGGTGTTCTTCGTGTAAGGCGGTTGTGAACGCTCCGAGTAATCTTGCTAAGTTTCCGTGTCCGCAATGTCATGTGAGGATTGATGTTCATGCTGATGTTGAAGAAGTTAACGAGCTGGTTAATGAAGTGGAGCAAGAAGAAGGCGATGGAGGTATCGCCGGAGAAACATTTACAGATTATCGACCATCCAAGCTATCTATTGGATCTCCACACCCAGATCCGATTGTAGAGACATCTTCCTTGTCTGCAGTGCAGCCGCCTGAGCCTACTTATGATCCAAAGATTAAGAATGATTTGGAACGTTCAAAGGCATTGTCATGCTTGCAGATCGAGACATTGGTTTATGCTTGTCAGAGACACCTTCAACACATTCCCAGTGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAGTCGCTGGGCTAATCTGGGAGAACTGGCACCATGGAAGGAGAAAAGCCTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGACATGGGTGCAAGTTGCATTGCAGTGCATGCTTTGAATAAACTGCCTTATACTAAGCTTGATACAAAGTCTGTTGGAGTTAAGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCATCATCTGACAGAGGTCGTACCCGTATGCAACAGCTTTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGATAAGAAGCCGACGAAAACTGGTCAAGCAGTACTTGATATACAGGCTCAACTACCTGAAGCTCGGGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGTCTTGGCCTTTGGGGAGCTGGGACTTATTTCCCTGATTTTGGTGAATTTCTAGGTGCTCTTGAGAAAGGGGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACTTGAAAGCAAGGGGGATGTATTTATGTCGCACACTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGACGCACCATTAGATGATAGAATGATGCATGCGTATAAAAAGGCTACAGAAGTTTGGTTGGATTTGCGTAAGAAGTTGCAGTCTGTCATTGAGTTAATATCTGACAAAATTAACACTAGACAACTATGGCGATCATATTGGGCAAGCCACCAGAGATTCTTCAGACATATGTGTATGTCTGCTAAAGTTCCTACTGCAGTGAGACTGGTGAACCAAGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTGCAGAGTACGGGGGAAGCAAGGACGGAGGAAGCTGTTTCAAAATACGGCTCTGAATTTGATGACTTTATTTCTGGACCTCGTGAGTTGCTGCTAAAATTTGTTGAAGACAATTTCCCATTGCCACAAAAGCCTGAACTTCTCCCCGAAGATGACGGAGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGACGTTTCAGGAAAATCTCGAGTCAGAAAAGTAGCCAAGCTGCAGCCGCCTAGTGATTCTGAAAGTGATGAAGAATCTGAAACTGCCTCTGTTCCTGATTCTTCTGATTCTGATTACGGACCAGAAGGGAATGAAAGTGCTGCCTCTGGTCTTGAATCTTCCGACTCTGATTATGAGGAGTTTCAGAAATGTGAAATATGTGGCACTGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCACTGTGGAAAATACGCTCATCACTCATGCTTGGTGCCACCAATTAGCGATTTTGTTCTTGAGGAATGGGCATGTGATTTGTGCAAGGATACAACCGTAAACTATCTCCCTCCTGGAACAGATATAATTGAACTCCAGAAAAGGTATGACACAGCCATGGAGTGCAAGAAAAATATATTAGAGATGATTTGTGCTTTAGATCTTCCGAACAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCCATGACAAAGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTCAGGGCCCCTAGTGGAACGGGTGTGTTTTATCAGACTCGAAATACAAAAGATGTCACTGCCGAGATGGTCAACATGAATGAGAAAAAGCTCTTTATGGAAGGTAAGAAGTTAGTGGCCATCATCTCTGAAGCAGGATCAGCTGGCGTTTCGTTGCAGGCAGACCGAAGAGTGATAAATCAGAAAAGAAGGGTTCACTTGACTCTTGAACTTCCATGGAGTGCCGACCGAGCAATTCAGCAGTTACTATTTTCAAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTTTGACTCAGGGAGATCGTAGGGCAGGGCCTTCGTTAAGTGCATATAATTATGATAGTCCTTATGGGAAGAGAGCACTGATGCTTTTGTACAATGGAATACTGGAGCGGGATCCCCTTCCTGTTGTACCTCCAGGATGCTTATCTGACAGACCAGGTACAATCAAAGATTTTATTATGCAGGCAAAAGCTGCTCTTCTTTCCGTTGGAATTTTTAAGGACGACGGCCTTGGAGATGATGATATGAATTGCTACATTGATGATAAAAATGATATACACAATCTTGGACGATTTCTCAACCGGCTTTTAGGAATAGCTCCTGAAACTCAGAATAGGCTATTTGAGTTATTTGTGAATATCTTGGATCTTCTTGTTAATAAAGCTCGCATTGAAGGTAACCTTGATACAGGCATTGTTGACTTGAAAGCTAATGTCATTGAACTGCAAGGGACTCCAAAGACAGTCTATGTTGATCAAATGAGCGGGGCTTCAACTATTCTGTTCACATTCACCTTGGATCGTGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGTTGGATTTTGTTCAACTGGTGATGGCTTCTATAAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATGTTATTTTAGCATTTGAAAGTTCGGCTCCATCTATGTATAAGATAGTTCGTCCTCCTACCGGAGAATCAACTCGGGATATGCATCTGCTAGAATTAACTAGAAAATATTCAAAAGTTTCATCTTTAAAGGAGGCCCAAATTGGTTGGGAAACCGAATATGAAGCTTCATTTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGTAAGTTCTGTTCAGTTGGCTCAAGAATACAGCAAGTAAATGTCTTAGGTGGTGTTATTCTTCCTGTTTGGGGAAACATAGATAAGGCGCTCTCTAAGCAGGCCCGATACATGCATAAGAGGCTACGCATTGTTCGTGTTGAAACTACATCAGATAACAGACATATAGTAGGGCTTCTTGTTCCTAATGCAGCAGTTGAAACTGTGCTTCAAGGTTTATCATACGTTATAGAACTGGATGATTGA

Protein sequence

>Msa0290140

MHRQPQPPPPSTARARCAGCRTYFSAAQGVAELPCPKCQMPHVFFVDSSAVKIRCSSCKAVVNAPSNLAKFPCPQCHVRIDVHADVEEVNELVNEVEQEEGDGGIAGETFTDYRPSKLSIGSPHPDPIVETSSLSAVQPPEPTYDPKIKNDLERSKALSCLQIETLVYACQRHLQHIPSGARAGFFIGDGAGVGKGRTVAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDMGASCIAVHALNKLPYTKLDTKSVGVKEGVIFSTYSSLIASSDRGRTRMQQLCHKAKNLVPEKDKKPTKTGQAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGAGTYFPDFGEFLGALEKGGVGALELVAMDLKARGMYLCRTLSYKGAEFEIIDAPLDDRMMHAYKKATEVWLDLRKKLQSVIELISDKINTRQLWRSYWASHQRFFRHMCMSAKVPTAVRLVNQALMEDKCVVIGLQSTGEARTEEAVSKYGSEFDDFISGPRELLLKFVEDNFPLPQKPELLPEDDGVKELQRKRHLASPDVSGKSRVRKVAKLQPPSDSESDEESETASVPDSSDSDYGPEGNESAASGLESSDSDYEEFQKCEICGTEEERENLLQCSHCGKYAHHSCLVPPISDFVLEEWACDLCKDTTVNYLPPGTDIIELQKRYDTAMECKKNILEMICALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGTGVFYQTRNTKDVTAEMVNMNEKKLFMEGKKLVAIISEAGSAGVSLQADRRVINQKRRVHLTLELPWSADRAIQQLLFSNLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSPYGKRALMLLYNGILERDPLPVVPPGCLSDRPGTIKDFIMQAKAALLSVGIFKDDGLGDDDMNCYIDDKNDIHNLGRFLNRLLGIAPETQNRLFELFVNILDLLVNKARIEGNLDTGIVDLKANVIELQGTPKTVYVDQMSGASTILFTFTLDRGVSWELANTMLNEKQKVGFCSTGDGFYKSKREWLGKRHVILAFESSAPSMYKIVRPPTGESTRDMHLLELTRKYSKVSSLKEAQIGWETEYEASFKQCMHGPNCKIGKFCSVGSRIQQVNVLGGVILPVWGNIDKALSKQARYMHKRLRIVRVETTSDNRHIVGLLVPNAAVETVLQGLSYVIELDD*