Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291580 | KEH42071.1 | 88.450 | 329 | 18 | 10 | 3 | 320 | 168 | 487 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291580 | sp|Q9SA82|BH052_ARATH | 38.596 | 228 | 121 | 7 | 99 | 313 | 41 | 262 | 6.00e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291580 | A0A072VKB3 | 88.450 | 329 | 18 | 10 | 3 | 320 | 168 | 487 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0291580 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291580 | MtrunA17_Chr2g0311101 | 87.307 | 323 | 25 | 4 | 1 | 320 | 1 | 310 | 0.0 | 527 |
| Msa0291580 | MtrunA17_Chr1g0179061 | 87.097 | 248 | 13 | 9 | 13 | 249 | 1 | 240 | 1.44e-142 | 402 |
| Msa0291580 | MtrunA17_Chr8g0384141 | 58.491 | 53 | 22 | 0 | 190 | 242 | 125 | 177 | 7.30e-13 | 67.8 |
| Msa0291580 | MtrunA17_Chr3g0134001 | 58.491 | 53 | 22 | 0 | 190 | 242 | 182 | 234 | 3.21e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291580 | AT1G30670.1 | 38.596 | 228 | 121 | 7 | 99 | 313 | 41 | 262 | 6.10e-30 | 115 |
| Msa0291580 | AT2G34820.1 | 39.331 | 239 | 106 | 7 | 99 | 313 | 66 | 289 | 5.42e-26 | 105 |
| Msa0291580 | AT3G21330.1 | 60.377 | 53 | 21 | 0 | 190 | 242 | 280 | 332 | 5.40e-13 | 69.3 |
| Msa0291580 | AT5G01305.1 | 50.000 | 58 | 29 | 0 | 190 | 247 | 48 | 105 | 6.65e-12 | 63.5 |
Find 48 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTATGATTGCTCAATT+TGG | 0.191234 | 2_3:+40226109 | None:intergenic |
| AGTTGGAATGCTTCAACTTA+TGG | 0.195386 | 2_3:-40226997 | Msa0291580:CDS |
| ATCTCTGCTGTGTTCATCTT+TGG | 0.238213 | 2_3:+40227062 | None:intergenic |
| AAAATGAAATCTTCCTCATT+TGG | 0.263570 | 2_3:+40227383 | None:intergenic |
| AATTTGGTGACAAACTCTTT+TGG | 0.289383 | 2_3:+40226125 | None:intergenic |
| CCTCATAGTATAACAGCTTT+TGG | 0.301868 | 2_3:+40227330 | None:intergenic |
| AAATGAAATCTTCCTCATTT+GGG | 0.325640 | 2_3:+40227384 | None:intergenic |
| GAAGCAAAAGGGTTAGGGTT+AGG | 0.345524 | 2_3:+40227236 | None:intergenic |
| AAGCAAAAGGGTTAGGGTTA+GGG | 0.345934 | 2_3:+40227237 | None:intergenic |
| TACAATTTCTCTTGAACAAA+TGG | 0.348402 | 2_3:+40226170 | None:intergenic |
| GAGAAGCTTCATTGAAATAG+TGG | 0.359894 | 2_3:+40227546 | None:intergenic |
| ATCAAAACCTACCATCCTTA+AGG | 0.361760 | 2_3:-40226081 | Msa0291580:CDS |
| AAATAACACTATTCTTGCTT+TGG | 0.365183 | 2_3:+40226020 | None:intergenic |
| TCAAAGGAAGCAAAAGGGTT+AGG | 0.369513 | 2_3:+40227230 | None:intergenic |
| GCAGTTTGAATAGGTTGATA+AGG | 0.385279 | 2_3:+40227632 | None:intergenic |
| GAGCTTGGGAAGTTGGTTCC+TGG | 0.392352 | 2_3:-40227089 | Msa0291580:CDS |
| GACACAAGAGCTTGGGAAGT+TGG | 0.397999 | 2_3:-40227096 | Msa0291580:CDS |
| TTGATTATTTCAGGAAGAAA+AGG | 0.418378 | 2_3:-40226234 | Msa0291580:intron |
| CAAGCTGTTTCAGACCCTTA+AGG | 0.427556 | 2_3:+40226066 | None:intergenic |
| TCAAAACCTACCATCCTTAA+GGG | 0.456430 | 2_3:-40226080 | Msa0291580:CDS |
| AAGGGTCTGAAACAGCTTGT+TGG | 0.460418 | 2_3:-40226062 | Msa0291580:CDS |
| CAAAGGAAGCAAAAGGGTTA+GGG | 0.461232 | 2_3:+40227231 | None:intergenic |
| TTGTGTAGATCTTCACTTGG+AGG | 0.465635 | 2_3:+40226206 | None:intergenic |
| TCTGCCTCAAAGGAAGCAAA+AGG | 0.471457 | 2_3:+40227224 | None:intergenic |
| AGTGGTGATTTCTGAGTTGT+TGG | 0.472171 | 2_3:+40227607 | None:intergenic |
| CAGTTTGAATAGGTTGATAA+GGG | 0.475268 | 2_3:+40227633 | None:intergenic |
| TTGTTGGTAGCAGTTTGAAT+AGG | 0.476845 | 2_3:+40227623 | None:intergenic |
| GTTCAATGTGAGAAGAAAGT+TGG | 0.488552 | 2_3:-40227182 | Msa0291580:CDS |
| CCAAAAGCTGTTATACTATG+AGG | 0.493920 | 2_3:-40227330 | Msa0291580:CDS |
| TGTAGATCTTCACTTGGAGG+AGG | 0.494574 | 2_3:+40226209 | None:intergenic |
| GTGTTCATCTTTGGTCCACC+AGG | 0.499817 | 2_3:+40227071 | None:intergenic |
| ACTGAGAAGACACAAGAGCT+TGG | 0.499993 | 2_3:-40227104 | Msa0291580:CDS |
| CTGAGAAGACACAAGAGCTT+GGG | 0.500383 | 2_3:-40227103 | Msa0291580:CDS |
| AGAGTATCGCGGCTCGAGAA+AGG | 0.514420 | 2_3:-40227139 | Msa0291580:CDS |
| CTTGGGAAGTTGGTTCCTGG+TGG | 0.551828 | 2_3:-40227086 | Msa0291580:CDS |
| AGTTTGTGTAGATCTTCACT+TGG | 0.558027 | 2_3:+40226203 | None:intergenic |
| TTGTTCATGATGTTGAAAAG+TGG | 0.560071 | 2_3:+40227589 | None:intergenic |
| TCGCGGCTCGAGAAAGGAGA+AGG | 0.564993 | 2_3:-40227133 | Msa0291580:CDS |
| GTGAGAAGAAAGTTGGTGAA+AGG | 0.566992 | 2_3:-40227175 | Msa0291580:CDS |
| AAGTTTCTTCAAGCTCAAGT+TGG | 0.567049 | 2_3:-40227014 | Msa0291580:CDS |
| ACTTATGGAAACATTTAGCA+AGG | 0.569731 | 2_3:-40226982 | Msa0291580:intron |
| TTCAGACCCTTAAGGATGGT+AGG | 0.578594 | 2_3:+40226074 | None:intergenic |
| GAGTTGAAAAGCTCTTGTTG+TGG | 0.596772 | 2_3:+40227293 | None:intergenic |
| CTGCCTCAAAGGAAGCAAAA+GGG | 0.606158 | 2_3:+40227225 | None:intergenic |
| CTGTTTCAGACCCTTAAGGA+TGG | 0.616344 | 2_3:+40226070 | None:intergenic |
| AGTAGTTGATCATCTTGACA+AGG | 0.655107 | 2_3:+40227464 | None:intergenic |
| TATCTCGTCGCAGAGTATCG+CGG | 0.698927 | 2_3:-40227150 | Msa0291580:CDS |
| GTAGTTGATCATCTTGACAA+GGG | 0.704443 | 2_3:+40227465 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTTTTTTGTTAACA+TGG | - | chr2_3:40226045-40226064 | Msa0291580:CDS | 15.0% |
| !!! | TTTTGTTTTTTTGTTAACAT+GGG | - | chr2_3:40226046-40226065 | Msa0291580:CDS | 15.0% |
| !! | ATCTTTGTAAATATCTAAAA+TGG | - | chr2_3:40226954-40226973 | Msa0291580:intron | 15.0% |
| !!! | CACTATTAATTTTATTTTCT+AGG | + | chr2_3:40227383-40227402 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTTTTGTTAACA+TGG | - | chr2_3:40226045-40226064 | Msa0291580:CDS | 15.0% |
| !!! | TTTTGTTTTTTTGTTAACAT+GGG | - | chr2_3:40226046-40226065 | Msa0291580:CDS | 15.0% |
| !! | ATCTTTGTAAATATCTAAAA+TGG | - | chr2_3:40226954-40226973 | Msa0291580:intron | 15.0% |
| !!! | CACTATTAATTTTATTTTCT+AGG | + | chr2_3:40227383-40227402 | None:intergenic | 15.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | + | chr2_3:40226244-40226263 | None:intergenic | 20.0% |
| !! | ACTAACTAAATCTACAATAA+TGG | + | chr2_3:40226989-40227008 | None:intergenic | 20.0% |
| !!! | AATATTTTCAGAGTAAAAGT+AGG | + | chr2_3:40227091-40227110 | None:intergenic | 20.0% |
| !!! | CTTTTACTCTGAAAATATTT+AGG | - | chr2_3:40227092-40227111 | Msa0291580:CDS | 20.0% |
| !!! | CAATAAAAAAGAGAGTATTT+AGG | - | chr2_3:40227192-40227211 | Msa0291580:CDS | 20.0% |
| !! | GAATATTTAAAAACAAAGAG+TGG | + | chr2_3:40227273-40227292 | None:intergenic | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | + | chr2_3:40227430-40227449 | None:intergenic | 20.0% |
| !!! | ATATGATCATTGATTATTTC+AGG | - | chr2_3:40227492-40227511 | Msa0291580:CDS | 20.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | + | chr2_3:40226244-40226263 | None:intergenic | 20.0% |
| !! | ACTAACTAAATCTACAATAA+TGG | + | chr2_3:40226989-40227008 | None:intergenic | 20.0% |
| !!! | AATATTTTCAGAGTAAAAGT+AGG | + | chr2_3:40227091-40227110 | None:intergenic | 20.0% |
| !!! | CTTTTACTCTGAAAATATTT+AGG | - | chr2_3:40227092-40227111 | Msa0291580:CDS | 20.0% |
| !!! | CAATAAAAAAGAGAGTATTT+AGG | - | chr2_3:40227192-40227211 | Msa0291580:CDS | 20.0% |
| !! | GAATATTTAAAAACAAAGAG+TGG | + | chr2_3:40227273-40227292 | None:intergenic | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | + | chr2_3:40227430-40227449 | None:intergenic | 20.0% |
| !!! | ATATGATCATTGATTATTTC+AGG | - | chr2_3:40227492-40227511 | Msa0291580:CDS | 20.0% |
| ! | AAATGAAATCTTCCTCATTT+GGG | + | chr2_3:40226354-40226373 | None:intergenic | 25.0% |
| ! | AAAATGAAATCTTCCTCATT+TGG | + | chr2_3:40226355-40226374 | None:intergenic | 25.0% |
| ! | AAACTCATCCACAAAAAAAT+TGG | + | chr2_3:40226470-40226489 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | + | chr2_3:40226538-40226557 | None:intergenic | 25.0% |
| !! | TTTTATCAACATAAGACCTA+AGG | + | chr2_3:40226890-40226909 | None:intergenic | 25.0% |
| ! | TTAGGAACAACAATTGTATA+TGG | - | chr2_3:40227210-40227229 | Msa0291580:CDS | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | - | chr2_3:40227501-40227520 | Msa0291580:CDS | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | + | chr2_3:40227568-40227587 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | + | chr2_3:40227629-40227648 | None:intergenic | 25.0% |
| ! | AAATGAAATCTTCCTCATTT+GGG | + | chr2_3:40226354-40226373 | None:intergenic | 25.0% |
| ! | AAAATGAAATCTTCCTCATT+TGG | + | chr2_3:40226355-40226374 | None:intergenic | 25.0% |
| ! | AAACTCATCCACAAAAAAAT+TGG | + | chr2_3:40226470-40226489 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | + | chr2_3:40226538-40226557 | None:intergenic | 25.0% |
| !! | TTTTATCAACATAAGACCTA+AGG | + | chr2_3:40226890-40226909 | None:intergenic | 25.0% |
| ! | TTAGGAACAACAATTGTATA+TGG | - | chr2_3:40227210-40227229 | Msa0291580:CDS | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | - | chr2_3:40227501-40227520 | Msa0291580:CDS | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | + | chr2_3:40227568-40227587 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | + | chr2_3:40227629-40227648 | None:intergenic | 25.0% |
| !! | CAGTTTGAATAGGTTGATAA+GGG | + | chr2_3:40226105-40226124 | None:intergenic | 30.0% |
| TTGTTCATGATGTTGAAAAG+TGG | + | chr2_3:40226149-40226168 | None:intergenic | 30.0% | |
| !!! | ATCGTTTTGAGAAGAAAAAG+TGG | + | chr2_3:40226305-40226324 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTCTCAAAACGA+TGG | - | chr2_3:40226304-40226323 | Msa0291580:intron | 30.0% |
| ! | GAATGAAATTTTCCCAAATG+AGG | - | chr2_3:40226339-40226358 | Msa0291580:intron | 30.0% |
| !!! | CAACTCAACCAATTTTTTTG+TGG | - | chr2_3:40226459-40226478 | Msa0291580:intron | 30.0% |
| ACTTATGGAAACATTTAGCA+AGG | - | chr2_3:40226753-40226772 | Msa0291580:intron | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | - | chr2_3:40227315-40227334 | Msa0291580:CDS | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | + | chr2_3:40227328-40227347 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | + | chr2_3:40227329-40227348 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | + | chr2_3:40227613-40227632 | None:intergenic | 30.0% |
| !! | CAGTTTGAATAGGTTGATAA+GGG | + | chr2_3:40226105-40226124 | None:intergenic | 30.0% |
| TTGTTCATGATGTTGAAAAG+TGG | + | chr2_3:40226149-40226168 | None:intergenic | 30.0% | |
| !!! | ATCGTTTTGAGAAGAAAAAG+TGG | + | chr2_3:40226305-40226324 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTCTCAAAACGA+TGG | - | chr2_3:40226304-40226323 | Msa0291580:intron | 30.0% |
| ! | GAATGAAATTTTCCCAAATG+AGG | - | chr2_3:40226339-40226358 | Msa0291580:intron | 30.0% |
| !!! | CAACTCAACCAATTTTTTTG+TGG | - | chr2_3:40226459-40226478 | Msa0291580:intron | 30.0% |
| ACTTATGGAAACATTTAGCA+AGG | - | chr2_3:40226753-40226772 | Msa0291580:intron | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | - | chr2_3:40227315-40227334 | Msa0291580:CDS | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | + | chr2_3:40227328-40227347 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | + | chr2_3:40227329-40227348 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | + | chr2_3:40227613-40227632 | None:intergenic | 30.0% |
| !! | GCAGTTTGAATAGGTTGATA+AGG | + | chr2_3:40226106-40226125 | None:intergenic | 35.0% |
| !! | TTGTTGGTAGCAGTTTGAAT+AGG | + | chr2_3:40226115-40226134 | None:intergenic | 35.0% |
| GAGAAGCTTCATTGAAATAG+TGG | + | chr2_3:40226192-40226211 | None:intergenic | 35.0% | |
| GTAGTTGATCATCTTGACAA+GGG | + | chr2_3:40226273-40226292 | None:intergenic | 35.0% | |
| AGTAGTTGATCATCTTGACA+AGG | + | chr2_3:40226274-40226293 | None:intergenic | 35.0% | |
| ! | TATAACAGCTTTTGGCGTTT+TGG | + | chr2_3:40226400-40226419 | None:intergenic | 35.0% |
| ! | CCTCATAGTATAACAGCTTT+TGG | + | chr2_3:40226408-40226427 | None:intergenic | 35.0% |
| CCAAAAGCTGTTATACTATG+AGG | - | chr2_3:40226405-40226424 | Msa0291580:intron | 35.0% | |
| !!! | AATTTTTGGTTCTGCCTCAA+AGG | + | chr2_3:40226524-40226543 | None:intergenic | 35.0% |
| GTTCAATGTGAGAAGAAAGT+TGG | - | chr2_3:40226553-40226572 | Msa0291580:intron | 35.0% | |
| AAGTTTCTTCAAGCTCAAGT+TGG | - | chr2_3:40226721-40226740 | Msa0291580:intron | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | - | chr2_3:40226738-40226757 | Msa0291580:intron | 35.0% | |
| ATCAACATAAGACCTAAGGA+AGG | + | chr2_3:40226886-40226905 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGTAAAAGTAGGC+AGG | + | chr2_3:40227087-40227106 | None:intergenic | 35.0% |
| CGGTTAATAAGAAGAGGAAA+TGG | - | chr2_3:40227168-40227187 | Msa0291580:CDS | 35.0% | |
| CAATTGTATATGGAATGAGC+TGG | - | chr2_3:40227220-40227239 | Msa0291580:CDS | 35.0% | |
| AGTTTGTGTAGATCTTCACT+TGG | + | chr2_3:40227535-40227554 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | - | chr2_3:40227654-40227673 | Msa0291580:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | - | chr2_3:40227655-40227674 | Msa0291580:CDS | 35.0% | |
| !! | GCAGTTTGAATAGGTTGATA+AGG | + | chr2_3:40226106-40226125 | None:intergenic | 35.0% |
| !! | TTGTTGGTAGCAGTTTGAAT+AGG | + | chr2_3:40226115-40226134 | None:intergenic | 35.0% |
| GAGAAGCTTCATTGAAATAG+TGG | + | chr2_3:40226192-40226211 | None:intergenic | 35.0% | |
| GTAGTTGATCATCTTGACAA+GGG | + | chr2_3:40226273-40226292 | None:intergenic | 35.0% | |
| AGTAGTTGATCATCTTGACA+AGG | + | chr2_3:40226274-40226293 | None:intergenic | 35.0% | |
| ! | TATAACAGCTTTTGGCGTTT+TGG | + | chr2_3:40226400-40226419 | None:intergenic | 35.0% |
| ! | CCTCATAGTATAACAGCTTT+TGG | + | chr2_3:40226408-40226427 | None:intergenic | 35.0% |
| CCAAAAGCTGTTATACTATG+AGG | - | chr2_3:40226405-40226424 | Msa0291580:intron | 35.0% | |
| !!! | AATTTTTGGTTCTGCCTCAA+AGG | + | chr2_3:40226524-40226543 | None:intergenic | 35.0% |
| GTTCAATGTGAGAAGAAAGT+TGG | - | chr2_3:40226553-40226572 | Msa0291580:intron | 35.0% | |
| AAGTTTCTTCAAGCTCAAGT+TGG | - | chr2_3:40226721-40226740 | Msa0291580:intron | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | - | chr2_3:40226738-40226757 | Msa0291580:intron | 35.0% | |
| ATCAACATAAGACCTAAGGA+AGG | + | chr2_3:40226886-40226905 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGTAAAAGTAGGC+AGG | + | chr2_3:40227087-40227106 | None:intergenic | 35.0% |
| CGGTTAATAAGAAGAGGAAA+TGG | - | chr2_3:40227168-40227187 | Msa0291580:CDS | 35.0% | |
| CAATTGTATATGGAATGAGC+TGG | - | chr2_3:40227220-40227239 | Msa0291580:CDS | 35.0% | |
| AGTTTGTGTAGATCTTCACT+TGG | + | chr2_3:40227535-40227554 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | - | chr2_3:40227654-40227673 | Msa0291580:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | - | chr2_3:40227655-40227674 | Msa0291580:CDS | 35.0% | |
| AGTGGTGATTTCTGAGTTGT+TGG | + | chr2_3:40226131-40226150 | None:intergenic | 40.0% | |
| GAGTTGAAAAGCTCTTGTTG+TGG | + | chr2_3:40226445-40226464 | None:intergenic | 40.0% | |
| AAGCAAAAGGGTTAGGGTTA+GGG | + | chr2_3:40226501-40226520 | None:intergenic | 40.0% | |
| CAAAGGAAGCAAAAGGGTTA+GGG | + | chr2_3:40226507-40226526 | None:intergenic | 40.0% | |
| TCAAAGGAAGCAAAAGGGTT+AGG | + | chr2_3:40226508-40226527 | None:intergenic | 40.0% | |
| ! | TAACCCTTTTGCTTCCTTTG+AGG | - | chr2_3:40226507-40226526 | Msa0291580:intron | 40.0% |
| !! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr2_3:40226560-40226579 | Msa0291580:intron | 40.0% |
| ATCTCTGCTGTGTTCATCTT+TGG | + | chr2_3:40226676-40226695 | None:intergenic | 40.0% | |
| ! | ACTGTTTTGTGTCCTTCCTT+AGG | - | chr2_3:40226871-40226890 | Msa0291580:intron | 40.0% |
| GGCTATGTAACTGTTCAACA+AGG | - | chr2_3:40227241-40227260 | Msa0291580:CDS | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | - | chr2_3:40227319-40227338 | Msa0291580:CDS | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | + | chr2_3:40227364-40227383 | None:intergenic | 40.0% |
| TTGTGTAGATCTTCACTTGG+AGG | + | chr2_3:40227532-40227551 | None:intergenic | 40.0% | |
| AGTGGTGATTTCTGAGTTGT+TGG | + | chr2_3:40226131-40226150 | None:intergenic | 40.0% | |
| GAGTTGAAAAGCTCTTGTTG+TGG | + | chr2_3:40226445-40226464 | None:intergenic | 40.0% | |
| AAGCAAAAGGGTTAGGGTTA+GGG | + | chr2_3:40226501-40226520 | None:intergenic | 40.0% | |
| CAAAGGAAGCAAAAGGGTTA+GGG | + | chr2_3:40226507-40226526 | None:intergenic | 40.0% | |
| TCAAAGGAAGCAAAAGGGTT+AGG | + | chr2_3:40226508-40226527 | None:intergenic | 40.0% | |
| ! | TAACCCTTTTGCTTCCTTTG+AGG | - | chr2_3:40226507-40226526 | Msa0291580:intron | 40.0% |
| !! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr2_3:40226560-40226579 | Msa0291580:intron | 40.0% |
| ATCTCTGCTGTGTTCATCTT+TGG | + | chr2_3:40226676-40226695 | None:intergenic | 40.0% | |
| ! | ACTGTTTTGTGTCCTTCCTT+AGG | - | chr2_3:40226871-40226890 | Msa0291580:intron | 40.0% |
| GGCTATGTAACTGTTCAACA+AGG | - | chr2_3:40227241-40227260 | Msa0291580:CDS | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | - | chr2_3:40227319-40227338 | Msa0291580:CDS | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | + | chr2_3:40227364-40227383 | None:intergenic | 40.0% |
| TTGTGTAGATCTTCACTTGG+AGG | + | chr2_3:40227532-40227551 | None:intergenic | 40.0% | |
| GAAGCAAAAGGGTTAGGGTT+AGG | + | chr2_3:40226502-40226521 | None:intergenic | 45.0% | |
| CTGCCTCAAAGGAAGCAAAA+GGG | + | chr2_3:40226513-40226532 | None:intergenic | 45.0% | |
| TCTGCCTCAAAGGAAGCAAA+AGG | + | chr2_3:40226514-40226533 | None:intergenic | 45.0% | |
| ACTGAGAAGACACAAGAGCT+TGG | - | chr2_3:40226631-40226650 | Msa0291580:intron | 45.0% | |
| CTGAGAAGACACAAGAGCTT+GGG | - | chr2_3:40226632-40226651 | Msa0291580:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGAA+GGG | - | chr2_3:40227136-40227155 | Msa0291580:CDS | 45.0% | |
| AGAGAGAGAGAGAAGGGTTA+GGG | - | chr2_3:40227142-40227161 | Msa0291580:CDS | 45.0% | |
| GGGAAGCGGTTAATAAGAAG+AGG | - | chr2_3:40227162-40227181 | Msa0291580:CDS | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | + | chr2_3:40227365-40227384 | None:intergenic | 45.0% |
| TGTAGATCTTCACTTGGAGG+AGG | + | chr2_3:40227529-40227548 | None:intergenic | 45.0% | |
| TTCAGACCCTTAAGGATGGT+AGG | + | chr2_3:40227664-40227683 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | + | chr2_3:40227668-40227687 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | + | chr2_3:40227672-40227691 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | - | chr2_3:40227673-40227692 | Msa0291580:CDS | 45.0% |
| GAAGCAAAAGGGTTAGGGTT+AGG | + | chr2_3:40226502-40226521 | None:intergenic | 45.0% | |
| CTGCCTCAAAGGAAGCAAAA+GGG | + | chr2_3:40226513-40226532 | None:intergenic | 45.0% | |
| TCTGCCTCAAAGGAAGCAAA+AGG | + | chr2_3:40226514-40226533 | None:intergenic | 45.0% | |
| ACTGAGAAGACACAAGAGCT+TGG | - | chr2_3:40226631-40226650 | Msa0291580:intron | 45.0% | |
| CTGAGAAGACACAAGAGCTT+GGG | - | chr2_3:40226632-40226651 | Msa0291580:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGAA+GGG | - | chr2_3:40227136-40227155 | Msa0291580:CDS | 45.0% | |
| AGAGAGAGAGAGAAGGGTTA+GGG | - | chr2_3:40227142-40227161 | Msa0291580:CDS | 45.0% | |
| GGGAAGCGGTTAATAAGAAG+AGG | - | chr2_3:40227162-40227181 | Msa0291580:CDS | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | + | chr2_3:40227365-40227384 | None:intergenic | 45.0% |
| TGTAGATCTTCACTTGGAGG+AGG | + | chr2_3:40227529-40227548 | None:intergenic | 45.0% | |
| TTCAGACCCTTAAGGATGGT+AGG | + | chr2_3:40227664-40227683 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | + | chr2_3:40227668-40227687 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | + | chr2_3:40227672-40227691 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | - | chr2_3:40227673-40227692 | Msa0291580:CDS | 45.0% |
| !! | GGCGTTTTGGACAATGAAGC+TGG | + | chr2_3:40226387-40226406 | None:intergenic | 50.0% |
| !! | TATCTCGTCGCAGAGTATCG+CGG | - | chr2_3:40226585-40226604 | Msa0291580:intron | 50.0% |
| GACACAAGAGCTTGGGAAGT+TGG | - | chr2_3:40226639-40226658 | Msa0291580:intron | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | + | chr2_3:40226667-40226686 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr2_3:40227133-40227152 | Msa0291580:CDS | 50.0% | |
| GAGAGAGAGAGAGAAGGGTT+AGG | - | chr2_3:40227141-40227160 | Msa0291580:CDS | 50.0% | |
| AGAGAGAAGGGTTAGGGAAG+CGG | - | chr2_3:40227148-40227167 | Msa0291580:CDS | 50.0% | |
| !! | GGCGTTTTGGACAATGAAGC+TGG | + | chr2_3:40226387-40226406 | None:intergenic | 50.0% |
| !! | TATCTCGTCGCAGAGTATCG+CGG | - | chr2_3:40226585-40226604 | Msa0291580:intron | 50.0% |
| GACACAAGAGCTTGGGAAGT+TGG | - | chr2_3:40226639-40226658 | Msa0291580:intron | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | + | chr2_3:40226667-40226686 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr2_3:40227133-40227152 | Msa0291580:CDS | 50.0% | |
| GAGAGAGAGAGAGAAGGGTT+AGG | - | chr2_3:40227141-40227160 | Msa0291580:CDS | 50.0% | |
| AGAGAGAAGGGTTAGGGAAG+CGG | - | chr2_3:40227148-40227167 | Msa0291580:CDS | 50.0% | |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | - | chr2_3:40226596-40226615 | Msa0291580:intron | 55.0% |
| ! | GAGCTTGGGAAGTTGGTTCC+TGG | - | chr2_3:40226646-40226665 | Msa0291580:intron | 55.0% |
| ! | CTTGGGAAGTTGGTTCCTGG+TGG | - | chr2_3:40226649-40226668 | Msa0291580:intron | 55.0% |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | - | chr2_3:40226596-40226615 | Msa0291580:intron | 55.0% |
| ! | GAGCTTGGGAAGTTGGTTCC+TGG | - | chr2_3:40226646-40226665 | Msa0291580:intron | 55.0% |
| ! | CTTGGGAAGTTGGTTCCTGG+TGG | - | chr2_3:40226649-40226668 | Msa0291580:intron | 55.0% |
| TCGCGGCTCGAGAAAGGAGA+AGG | - | chr2_3:40226602-40226621 | Msa0291580:intron | 60.0% | |
| TCGCGGCTCGAGAAAGGAGA+AGG | - | chr2_3:40226602-40226621 | Msa0291580:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 40226028 | 40227729 | 40226028 | ID=Msa0291580;Name=Msa0291580 |
| chr2_3 | mRNA | 40226028 | 40227729 | 40226028 | ID=Msa0291580-mRNA-1;Parent=Msa0291580;Name=Msa0291580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|320 |
| chr2_3 | exon | 40226983 | 40227729 | 40226983 | ID=Msa0291580-mRNA-1:exon:12921;Parent=Msa0291580-mRNA-1 |
| chr2_3 | exon | 40226028 | 40226243 | 40226028 | ID=Msa0291580-mRNA-1:exon:12920;Parent=Msa0291580-mRNA-1 |
| chr2_3 | CDS | 40226983 | 40227729 | 40226983 | ID=Msa0291580-mRNA-1:cds;Parent=Msa0291580-mRNA-1 |
| chr2_3 | CDS | 40226028 | 40226243 | 40226028 | ID=Msa0291580-mRNA-1:cds;Parent=Msa0291580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
