AlfalfaGEDB | Msa0292110

M. sativa cultivar zhongmu-4 / Msa0292110

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292110	XP_003596008.1	98.864	176	2	0	6	181	215	390	8.29e-123	362

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292110	sp\|Q93YN1\|CRPK1_ARATH	66.438	146	49	0	6	151	210	355	3.05e-66	210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292110	G7IJ71	98.864	176	2	0	6	181	215	390	3.96e-123	362

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292110	MtrunA17_Chr2g0312571	98.295	176	3	0	6	181	215	390	5.36e-125	360
Msa0292110	MtrunA17_Chr2g0312561	91.667	156	11	1	6	161	210	363	1.67e-101	297
Msa0292110	MtrunA17_Chr8g0358911	67.416	178	53	1	6	178	213	390	4.12e-71	220
Msa0292110	MtrunA17_Chr8g0360591	51.124	178	84	2	6	180	211	388	4.95e-55	178
Msa0292110	MtrunA17_Chr8g0358901	57.724	123	43	1	8	130	237	350	6.85e-42	143
Msa0292110	MtrunA17_Chr1g0181341	45.270	148	74	4	6	150	215	358	3.18e-37	132
Msa0292110	MtrunA17_Chr8g0358781	41.477	176	87	4	6	180	509	669	9.38e-34	125
Msa0292110	MtrunA17_Chr8g0358821	41.718	163	89	4	6	168	854	1010	1.05e-33	125
Msa0292110	MtrunA17_Chr2g0281971	43.089	123	69	1	6	128	216	337	1.53e-33	122
Msa0292110	MtrunA17_Chr8g0359691	47.059	119	61	2	6	123	831	948	7.64e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292110	AT1G16670.1	66.438	146	49	0	6	151	210	355	3.10e-67	210
Msa0292110	AT1G56130.3	45.600	125	66	2	6	130	660	782	1.53e-31	120
Msa0292110	AT1G56130.1	45.600	125	66	2	6	130	711	833	1.74e-31	120
Msa0292110	AT1G56130.2	45.600	125	66	2	6	130	859	981	2.72e-31	119
Msa0292110	AT1G56140.1	46.400	125	65	2	6	130	858	980	5.04e-31	118
Msa0292110	AT1G29720.1	37.853	177	101	3	6	181	838	1006	1.03e-30	117
Msa0292110	AT1G53430.1	41.139	158	91	1	6	163	836	991	1.20e-29	114
Msa0292110	AT1G53430.2	41.139	158	91	1	6	163	795	950	1.43e-29	114
Msa0292110	AT1G53440.1	48.333	120	62	0	6	125	834	953	1.51e-29	114
Msa0292110	AT1G56120.3	45.161	124	66	2	6	129	709	830	1.53e-29	114

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Find 104 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGGAGAGGGTGGTTT+TGG	0.281450	2_3:+40894671	Msa0292110:five_prime_UTR
AAACTCTGCAAAATTTACAT+GGG	0.598729	2_3:-40896591	None:intergenic
AAAGATGATGTAGAAATTTC+AGG	0.292560	2_3:-40893872	None:intergenic
AACTTCTCCAAGTTCATTTC+TGG	0.136398	2_3:+40896673	Msa0292110:three_prime_UTR
AAGAACAATTCATTCTAGAG+AGG	0.532890	2_3:+40895674	Msa0292110:CDS
AAGGCAGACATTTACAGTTT+TGG	0.329602	2_3:+40895592	Msa0292110:CDS
AATCAGAAATCTTCGGTGTA+AGG	0.428160	2_3:-40895386	None:intergenic
AATGTACTGTTGTGTAAATA+TGG	0.354434	2_3:+40896816	Msa0292110:three_prime_UTR
ACACCGAAGATTTCTGATTT+TGG	0.248636	2_3:+40895390	Msa0292110:five_prime_UTR
ACACGGTGTAAAATATGCAT+TGG	0.590100	2_3:+40895270	Msa0292110:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCTTACTGAATGAGAAA+GGG	-	chr2_3:40894056-40894075	None:intergenic	30.0%
AACTACAATGACACAATTGT+TGG	-	chr2_3:40894424-40894443	None:intergenic	30.0%
ATACCTGAAATATCTGTTCA+AGG	-	chr2_3:40894584-40894603	None:intergenic	30.0%
TCTATACCTACAAAGAACTA+AGG	+	chr2_3:40894618-40894637	Msa0292110:five_prime_UTR	30.0%
AGGGAAAAAAAATAACGATC+AGG	-	chr2_3:40894726-40894745	None:intergenic	30.0%
CATACTCATCGATAAGAAAA+GGG	-	chr2_3:40894745-40894764	None:intergenic	30.0%
TCATACTCATCGATAAGAAA+AGG	-	chr2_3:40894746-40894765	None:intergenic	30.0%
GTTGTGTCGAAAAAAATAAC+AGG	+	chr2_3:40894934-40894953	Msa0292110:five_prime_UTR	30.0%
GTGAAAGACTATTATTCTCA+AGG	-	chr2_3:40894977-40894996	None:intergenic	30.0%
CATATAAATCACAGAGAGTT+AGG	-	chr2_3:40895046-40895065	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	40893856	40896931	40893856	ID=Msa0292110;Name=Msa0292110
chr2_3	mRNA	40893856	40896931	40893856	ID=Msa0292110-mRNA-1;Parent=Msa0292110;Name=Msa0292110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=858\|1\|1\|1\|0.8\|0.5\|6\|404\|181
chr2_3	exon	40893856	40893943	40893856	ID=Msa0292110-mRNA-1:exon:13211;Parent=Msa0292110-mRNA-1
chr2_3	exon	40893972	40894111	40893972	ID=Msa0292110-mRNA-1:exon:13212;Parent=Msa0292110-mRNA-1
chr2_3	exon	40894591	40894706	40894591	ID=Msa0292110-mRNA-1:exon:13213;Parent=Msa0292110-mRNA-1
chr2_3	exon	40894798	40895008	40894798	ID=Msa0292110-mRNA-1:exon:13214;Parent=Msa0292110-mRNA-1
chr2_3	exon	40895229	40895696	40895229	ID=Msa0292110-mRNA-1:exon:13215;Parent=Msa0292110-mRNA-1
chr2_3	exon	40896147	40896931	40896147	ID=Msa0292110-mRNA-1:exon:13216;Parent=Msa0292110-mRNA-1
chr2_3	five_prime_UTR	40893856	40893943	40893856	ID=Msa0292110-mRNA-1:five_prime_utr;Parent=Msa0292110-mRNA-1
chr2_3	five_prime_UTR	40893972	40894111	40893972	ID=Msa0292110-mRNA-1:five_prime_utr;Parent=Msa0292110-mRNA-1
chr2_3	five_prime_UTR	40894591	40894706	40894591	ID=Msa0292110-mRNA-1:five_prime_utr;Parent=Msa0292110-mRNA-1
chr2_3	five_prime_UTR	40894798	40895008	40894798	ID=Msa0292110-mRNA-1:five_prime_utr;Parent=Msa0292110-mRNA-1
chr2_3	five_prime_UTR	40895229	40895531	40895229	ID=Msa0292110-mRNA-1:five_prime_utr;Parent=Msa0292110-mRNA-1
chr2_3	CDS	40895532	40895696	40895532	ID=Msa0292110-mRNA-1:cds;Parent=Msa0292110-mRNA-1
chr2_3	CDS	40896147	40896527	40896147	ID=Msa0292110-mRNA-1:cds;Parent=Msa0292110-mRNA-1
chr2_3	three_prime_UTR	40896528	40896931	40896528	ID=Msa0292110-mRNA-1:three_prime_utr;Parent=Msa0292110-mRNA-1

Gene Sequence

>Msa0292110

ATGGTCTATTTCAGAGGTTATTTGGCACCGGAATATGCAATAGGGGGAAGGCTTACACGAAAGGCAGACATTTACAGTTTTGGTGTTCTCCTTGTGGAGATAGTCAGCGGAAGATGTAACACAAATTCGCGACTGCCGATGGAAGAACAATTCATTCTAGAGAGGACATGGGATCTTTACGAGCGAAAGGAATTAGTTGGACTAGTAGATACTTCGCTAAACGGGGAATTTGATGCCGAGCAGGCATGTAAGTTTCTGAAGATTGGCCTTCTTTGCACTCAGGAATCTCCTAAGAGCCGACCGTCCATGTCTGCTGTGGTCAAGATGCTAACCGGAGAAATGAAAGTTGATGACAGTATGATGACAAAACCTGCCTTAATTTCTGATTTTATGGACCTCAAAGTTAGACATAAACAAGAAAGTATAACTGATATGAAGACTTCATCTTCATATAATACGTCCTCGGCCTCGGAGCATCAGGACACTACCATTATATCATCAGCTGCTACTTCAACCTTCACTACACAATATGATCACAGCATGTAA

Protein sequence

>Msa0292110

MVYFRGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPMEEQFILERTWDLYERKELVGLVDTSLNGEFDAEQACKFLKIGLLCTQESPKSRPSMSAVVKMLTGEMKVDDSMMTKPALISDFMDLKVRHKQESITDMKTSSSYNTSSASEHQDTTIISSAATSTFTTQYDHSM*