Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294660 | XP_013464613.1 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 1.64e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294660 | sp|F4JL28|EBS_ARATH | 84.332 | 217 | 26 | 1 | 1 | 209 | 1 | 217 | 2.51e-138 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294660 | I3T296 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 7.81e-162 | 454 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0294660 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294660 | MtrunA17_Chr2g0316511 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 1.50e-165 | 454 |
| Msa0294660 | MtrunA17_Chr3g0145031 | 67.123 | 219 | 68 | 3 | 1 | 216 | 1 | 218 | 4.55e-111 | 317 |
| Msa0294660 | MtrunA17_Chr2g0324381 | 64.398 | 191 | 63 | 3 | 1 | 189 | 10 | 197 | 4.82e-81 | 240 |
| Msa0294660 | MtrunA17_Chr3g0145041 | 57.513 | 193 | 78 | 2 | 24 | 216 | 8 | 196 | 1.16e-79 | 236 |
| Msa0294660 | MtrunA17_Chr5g0447451 | 48.819 | 127 | 55 | 5 | 71 | 187 | 15 | 141 | 1.98e-33 | 117 |
| Msa0294660 | MtrunA17_Chr2g0324361 | 57.576 | 99 | 39 | 2 | 25 | 123 | 12 | 107 | 9.70e-33 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294660 | AT4G22140.2 | 84.375 | 224 | 27 | 1 | 1 | 216 | 1 | 224 | 8.57e-144 | 400 |
| Msa0294660 | AT4G22140.1 | 84.332 | 217 | 26 | 1 | 1 | 209 | 1 | 217 | 2.56e-139 | 389 |
| Msa0294660 | AT4G22140.3 | 84.332 | 217 | 26 | 1 | 1 | 209 | 1 | 217 | 2.56e-139 | 389 |
| Msa0294660 | AT4G04260.2 | 75.543 | 184 | 43 | 2 | 26 | 208 | 9 | 191 | 9.06e-97 | 281 |
| Msa0294660 | AT4G39100.1 | 62.150 | 214 | 78 | 2 | 1 | 213 | 1 | 212 | 1.29e-96 | 281 |
| Msa0294660 | AT4G04260.1 | 74.860 | 179 | 43 | 2 | 31 | 208 | 1 | 178 | 1.67e-92 | 269 |
| Msa0294660 | AT4G39100.2 | 67.485 | 163 | 52 | 1 | 1 | 162 | 1 | 163 | 2.16e-81 | 240 |
| Msa0294660 | AT4G04260.3 | 76.429 | 140 | 32 | 1 | 1 | 139 | 1 | 140 | 4.69e-73 | 218 |
Find 70 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATCTTTCTGAACAGAAAA+AGG | 0.288644 | 2_3:-46676573 | None:intergenic |
| TATTGAAGAAGCAAAGAAAT+TGG | 0.316002 | 2_3:+46674734 | Msa0294660:CDS |
| AGGTTTGAAAATGGTGAAAA+AGG | 0.319346 | 2_3:-46673163 | None:intergenic |
| GGAACAAACAAGGTTGTTAA+AGG | 0.327215 | 2_3:+46673300 | Msa0294660:CDS |
| ATTAGGTCATCCGGGTTATA+AGG | 0.334913 | 2_3:-46674017 | None:intergenic |
| CTTCCACCAATAGATTCTTC+AGG | 0.349796 | 2_3:-46673654 | None:intergenic |
| CACTGCACCATTAGGTCATC+CGG | 0.369370 | 2_3:-46674026 | None:intergenic |
| TAAGGTTTGAGGTTTGAAAA+TGG | 0.384703 | 2_3:-46673172 | None:intergenic |
| TAAAGAGTGAATGAAACCTT+AGG | 0.390761 | 2_3:+46673082 | Msa0294660:five_prime_UTR |
| AACATTCAGAACAAACAAAA+TGG | 0.403224 | 2_3:-46674758 | None:intergenic |
| AGAAGATCGAGCAAGATAAT+AGG | 0.403757 | 2_3:+46673595 | Msa0294660:CDS |
| TGCTGAAATGCTAAGGTTTG+AGG | 0.409965 | 2_3:-46673183 | None:intergenic |
| CTATCAGATCCAGGTGATAC+AGG | 0.413593 | 2_3:-46674819 | None:intergenic |
| GTTCTGAGGATTACTATTGT+AGG | 0.415271 | 2_3:+46673802 | Msa0294660:CDS |
| ACCCTTCACACTGCACCATT+AGG | 0.433071 | 2_3:-46674034 | None:intergenic |
| TGATGCAGAAATGCAACTTT+TGG | 0.433600 | 2_3:+46676402 | Msa0294660:exon |
| TCAAGGTTTGATGTTATCTC+AGG | 0.436239 | 2_3:-46676611 | None:intergenic |
| GGTGGAAGAAGACAGTTTCA+TGG | 0.437599 | 2_3:+46673669 | Msa0294660:CDS |
| CAAAGTGCTCACACTATTGA+AGG | 0.439100 | 2_3:+46673729 | Msa0294660:CDS |
| TTATAACCCGGATGACCTAA+TGG | 0.443180 | 2_3:+46674019 | Msa0294660:CDS |
| TGTTGTTGTACAACTTTCAC+CGG | 0.462354 | 2_3:+46676450 | Msa0294660:three_prime_UTR |
| TTGTACAACTTTCACCGGAT+TGG | 0.467529 | 2_3:+46676455 | Msa0294660:three_prime_UTR |
| TGTGAGCGTGACGATTCATT+TGG | 0.468031 | 2_3:-46673056 | None:intergenic |
| GGTCCTCTCTTTCGCCGCTT+CGG | 0.470540 | 2_3:-46676378 | None:intergenic |
| CTTCTCCACACGTGCCACAT+AGG | 0.490109 | 2_3:-46673577 | None:intergenic |
| CTCACCTTGCTATCAGATCC+AGG | 0.492733 | 2_3:-46674828 | None:intergenic |
| GAGCACTTTGAACATCAAAA+TGG | 0.494985 | 2_3:-46673716 | None:intergenic |
| TATAGACCTGAAGAATCTAT+TGG | 0.496809 | 2_3:+46673648 | Msa0294660:CDS |
| AAAGTTGCATTTCTGCATCA+TGG | 0.501663 | 2_3:-46676399 | None:intergenic |
| TAGGTACCATCCTGCTTGTG+TGG | 0.503860 | 2_3:+46674704 | Msa0294660:intron |
| TTTGAGTATAAAGCTGCTAC+TGG | 0.508499 | 2_3:+46673825 | Msa0294660:CDS |
| ACTCACACAGCAACACGGTC+GGG | 0.512877 | 2_3:-46673858 | None:intergenic |
| AAGACAGTTTCATGGAGCTA+AGG | 0.520921 | 2_3:+46673677 | Msa0294660:CDS |
| TTCTCCACACGTGCCACATA+GGG | 0.531360 | 2_3:-46673576 | None:intergenic |
| GAGCCGAAGCGGCGAAAGAG+AGG | 0.538999 | 2_3:+46676375 | Msa0294660:CDS |
| AAAGAGTGAATGAAACCTTA+GGG | 0.541136 | 2_3:+46673083 | Msa0294660:five_prime_UTR |
| CACATGGCGAAGACAAGACC+AGG | 0.545829 | 2_3:+46673246 | Msa0294660:exon |
| TATACTAAGCTTGAGAATGT+AGG | 0.549874 | 2_3:+46673780 | Msa0294660:CDS |
| AAAGGGTTGCTGAAATGCTA+AGG | 0.550212 | 2_3:-46673190 | None:intergenic |
| ATAGTCATGCCCACACAAGC+AGG | 0.555183 | 2_3:-46674714 | None:intergenic |
| AACTCACACAGCAACACGGT+CGG | 0.557010 | 2_3:-46673859 | None:intergenic |
| GCCACCCTATGTGGCACGTG+TGG | 0.557957 | 2_3:+46673572 | Msa0294660:CDS |
| GACCTAATGGTGCAGTGTGA+AGG | 0.564361 | 2_3:+46674032 | Msa0294660:CDS |
| GGTGGCTTGCTCGTGTCAGA+AGG | 0.565415 | 2_3:-46673555 | None:intergenic |
| AAGATAATAGGAACAATGTG+AGG | 0.571957 | 2_3:+46673607 | Msa0294660:CDS |
| GCTTGAGAATGTAGGTTCTG+AGG | 0.572249 | 2_3:+46673788 | Msa0294660:CDS |
| CACGAGCAAGCCACCCTATG+TGG | 0.577004 | 2_3:+46673563 | Msa0294660:CDS |
| AGAAGAACAGAGGAACCCTA+AGG | 0.584772 | 2_3:-46673098 | None:intergenic |
| AGTGTGAAGGGTGCAAGGAT+TGG | 0.587494 | 2_3:+46674045 | Msa0294660:CDS |
| GCGGCATTTCCTGTATCACC+TGG | 0.591276 | 2_3:+46674810 | Msa0294660:CDS |
| ATGCGAGATGCCTTATAACC+CGG | 0.597197 | 2_3:+46674007 | Msa0294660:CDS |
| TCCACACGTGCCACATAGGG+TGG | 0.599622 | 2_3:-46673573 | None:intergenic |
| AGACCTGAAGAATCTATTGG+TGG | 0.602382 | 2_3:+46673651 | Msa0294660:CDS |
| ACCTAATGGTGCAGTGTGAA+GGG | 0.605001 | 2_3:+46674033 | Msa0294660:CDS |
| ACTGCACCATTAGGTCATCC+GGG | 0.612849 | 2_3:-46674025 | None:intergenic |
| CGATGATTTGAAGAAACCAC+AGG | 0.614767 | 2_3:+46674788 | Msa0294660:CDS |
| AGGTACCATCCTGCTTGTGT+GGG | 0.617835 | 2_3:+46674705 | Msa0294660:intron |
| TGAGTTAAGAAGAAGAACAG+AGG | 0.620150 | 2_3:-46673108 | None:intergenic |
| CACAATCAGAGGAACAAACA+AGG | 0.620724 | 2_3:+46673290 | Msa0294660:CDS |
| ATCACCTGGATCTGATAGCA+AGG | 0.622565 | 2_3:+46674824 | Msa0294660:CDS |
| ATGTGAGGGTTCGTGTGAGA+TGG | 0.629136 | 2_3:+46673622 | Msa0294660:CDS |
| ATGGACTCTTACACAATCAG+AGG | 0.631954 | 2_3:+46673279 | Msa0294660:CDS |
| AAAGTGCTCACACTATTGAA+GGG | 0.633847 | 2_3:+46673730 | Msa0294660:CDS |
| ACACAAAATAGCTACCACAT+AGG | 0.637061 | 2_3:-46676430 | None:intergenic |
| GGTGCAGTGTGAAGGGTGCA+AGG | 0.638726 | 2_3:+46674040 | Msa0294660:CDS |
| AGATAATAGGAACAATGTGA+GGG | 0.647787 | 2_3:+46673608 | Msa0294660:CDS |
| TCATGCCCACACAAGCAGGA+TGG | 0.663384 | 2_3:-46674710 | None:intergenic |
| GATACAGGAAATGCCGCCTG+TGG | 0.663841 | 2_3:-46674804 | None:intergenic |
| GAGAGACTCAAACACACACA+TGG | 0.668411 | 2_3:+46673230 | Msa0294660:exon |
| TGATTTGAAGAAACCACAGG+CGG | 0.740926 | 2_3:+46674791 | Msa0294660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATATTCTAATTAAAATT+TGG | + | chr2_3:46674982-46675001 | Msa0294660:intron | 10.0% |
| !! | AAAAAAAAAAAAAACATACA+AGG | + | chr2_3:46675384-46675403 | Msa0294660:intron | 10.0% |
| !! | AAAAAAAAAAAAACATACAA+GGG | + | chr2_3:46675385-46675404 | Msa0294660:intron | 10.0% |
| !! | ATCAAATTTACAAAAATTTA+CGG | - | chr2_3:46675602-46675621 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTGTGTTTTTTG+AGG | + | chr2_3:46673471-46673490 | Msa0294660:intron | 15.0% |
| !!! | AAAGTGAGTTATATATTTTA+TGG | + | chr2_3:46675139-46675158 | Msa0294660:intron | 15.0% |
| !!! | ACCACATTTAAAATTTATAA+GGG | - | chr2_3:46675175-46675194 | None:intergenic | 15.0% |
| !!! | AACCACATTTAAAATTTATA+AGG | - | chr2_3:46675176-46675195 | None:intergenic | 15.0% |
| !! | TCAAATTTACAAAAATTTAC+GGG | - | chr2_3:46675601-46675620 | None:intergenic | 15.0% |
| !!! | ATTTTGTGAGTAATAAATAA+TGG | + | chr2_3:46676189-46676208 | Msa0294660:intron | 15.0% |
| !!! | TTTTTCACTTAAAATATTCA+AGG | - | chr2_3:46676631-46676650 | None:intergenic | 15.0% |
| !!! | TGAATATTTTAAGTGAAAAA+TGG | + | chr2_3:46676631-46676650 | Msa0294660:three_prime_UTR | 15.0% |
| !! | AATAAAGAACCAAAAACAAA+AGG | - | chr2_3:46673896-46673915 | None:intergenic | 20.0% |
| !! | CAAATACTCAAAATTCAATT+AGG | - | chr2_3:46673921-46673940 | None:intergenic | 20.0% |
| !!! | TTTTGAATAATTTGCTGATT+TGG | + | chr2_3:46673958-46673977 | Msa0294660:intron | 20.0% |
| !!! | TGAGTGATTTTTAGTTTTTT+CGG | + | chr2_3:46674103-46674122 | Msa0294660:intron | 20.0% |
| !!! | TTTTGATGAATGAATATATG+TGG | + | chr2_3:46674158-46674177 | Msa0294660:intron | 20.0% |
| !!! | AATTTTAGCTCTTGTATTAA+CGG | - | chr2_3:46674388-46674407 | None:intergenic | 20.0% |
| !! | TTATAATTAACAATCAACCT+TGG | + | chr2_3:46674406-46674425 | Msa0294660:intron | 20.0% |
| !!! | GTTTATTTTTTCCAATCTAT+AGG | + | chr2_3:46674516-46674535 | Msa0294660:intron | 20.0% |
| !!! | GCAAAAGATTATTGAATTTT+TGG | + | chr2_3:46674584-46674603 | Msa0294660:intron | 20.0% |
| !! | TACCTTTCATAAAATATAGA+GGG | - | chr2_3:46674659-46674678 | None:intergenic | 20.0% |
| !!! | ATCTAGTTCTAAATATTATG+AGG | + | chr2_3:46674872-46674891 | Msa0294660:intron | 20.0% |
| !!! | ACCCTTATAAATTTTAAATG+TGG | + | chr2_3:46675171-46675190 | Msa0294660:intron | 20.0% |
| !! | TAATCAGTAGTTAATATCTA+GGG | + | chr2_3:46675679-46675698 | Msa0294660:intron | 20.0% |
| !! | TTATATTTAAGCTTATCTGA+TGG | + | chr2_3:46675718-46675737 | Msa0294660:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCAATAT+TGG | - | chr2_3:46675835-46675854 | None:intergenic | 20.0% |
| !!! | TCAAGTTTTTTATTCCTTTT+TGG | + | chr2_3:46676224-46676243 | Msa0294660:intron | 20.0% |
| !!! | ACATAATCTCTTTTAATCAA+TGG | + | chr2_3:46676247-46676266 | Msa0294660:intron | 20.0% |
| !! | TAACTCAAAACCACAATTTT+AGG | + | chr2_3:46673124-46673143 | Msa0294660:five_prime_UTR | 25.0% |
| !! | AACTCAAAACCACAATTTTA+GGG | + | chr2_3:46673125-46673144 | Msa0294660:five_prime_UTR | 25.0% |
| !! | TTTTATGAACCCTAAAATTG+TGG | - | chr2_3:46673137-46673156 | None:intergenic | 25.0% |
| !! | CTTCAAAATCGTTTCTTTTA+TGG | + | chr2_3:46673384-46673403 | Msa0294660:intron | 25.0% |
| ! | AGAAATGTGTAAAACTATGT+GGG | + | chr2_3:46673419-46673438 | Msa0294660:intron | 25.0% |
| ! | TTTGAGTATTTGAATTGATG+AGG | + | chr2_3:46673929-46673948 | Msa0294660:intron | 25.0% |
| ! | CTTAATAAAACATCTCCTTA+GGG | - | chr2_3:46674230-46674249 | None:intergenic | 25.0% |
| ! | ACTTAATAAAACATCTCCTT+AGG | - | chr2_3:46674231-46674250 | None:intergenic | 25.0% |
| ! | TGTAATACATTCTCTGTTAT+TGG | + | chr2_3:46674259-46674278 | Msa0294660:intron | 25.0% |
| !!! | ATATGCTATATTGGCTTTTT+AGG | + | chr2_3:46674622-46674641 | Msa0294660:intron | 25.0% |
| !! | TTCCCTCTATATTTTATGAA+AGG | + | chr2_3:46674654-46674673 | Msa0294660:intron | 25.0% |
| ! | GTACCTTTCATAAAATATAG+AGG | - | chr2_3:46674660-46674679 | None:intergenic | 25.0% |
| ! | TATTGAAGAAGCAAAGAAAT+TGG | + | chr2_3:46674734-46674753 | Msa0294660:CDS | 25.0% |
| ! | AACATTCAGAACAAACAAAA+TGG | - | chr2_3:46674761-46674780 | None:intergenic | 25.0% |
| ! | TTTAATCATATTGCAGCATT+AGG | - | chr2_3:46675121-46675140 | None:intergenic | 25.0% |
| !!! | AAATGTGGTTTTGATATCTT+TGG | + | chr2_3:46675186-46675205 | Msa0294660:intron | 25.0% |
| ! | ATTGACATCAGAAATTATCT+AGG | + | chr2_3:46675281-46675300 | Msa0294660:intron | 25.0% |
| ! | ATCTAGGCATAAAATATGAA+AGG | + | chr2_3:46675297-46675316 | Msa0294660:intron | 25.0% |
| ! | ATTTGTCCACCAAAAAAAAA+GGG | - | chr2_3:46675339-46675358 | None:intergenic | 25.0% |
| ! | TACCAAGGTAAAAGATAAAA+CGG | - | chr2_3:46675486-46675505 | None:intergenic | 25.0% |
| ! | GTAATCAGTAGTTAATATCT+AGG | + | chr2_3:46675678-46675697 | Msa0294660:intron | 25.0% |
| ! | AATCAGTAGTTAATATCTAG+GGG | + | chr2_3:46675680-46675699 | Msa0294660:intron | 25.0% |
| !! | ATTCTAACAATTTGAAGCTT+TGG | + | chr2_3:46676058-46676077 | Msa0294660:intron | 25.0% |
| !! | TTTGGTGATCTGATAAAATA+AGG | + | chr2_3:46676081-46676100 | Msa0294660:intron | 25.0% |
| !! | TTGGTGATCTGATAAAATAA+GGG | + | chr2_3:46676082-46676101 | Msa0294660:intron | 25.0% |
| !! | TGGCTTTTACAAGAAAATAA+AGG | - | chr2_3:46676156-46676175 | None:intergenic | 25.0% |
| ! | TTGTGAGTAATAAATAATGG+AGG | + | chr2_3:46676192-46676211 | Msa0294660:intron | 25.0% |
| ! | AAAAGAGATTATGTCCAAAA+AGG | - | chr2_3:46676241-46676260 | None:intergenic | 25.0% |
| !!! | ATTATTTTGATCGACACTAT+AGG | + | chr2_3:46676293-46676312 | Msa0294660:intron | 25.0% |
| !!! | TTATTTTGATCGACACTATA+GGG | + | chr2_3:46676294-46676313 | Msa0294660:intron | 25.0% |
| ! | AGAAAAAGGAAACACATAAA+TGG | - | chr2_3:46676562-46676581 | None:intergenic | 25.0% |
| ! | TAATCTTTCTGAACAGAAAA+AGG | - | chr2_3:46676576-46676595 | None:intergenic | 25.0% |
| TAAAGAGTGAATGAAACCTT+AGG | + | chr2_3:46673082-46673101 | Msa0294660:five_prime_UTR | 30.0% | |
| AAAGAGTGAATGAAACCTTA+GGG | + | chr2_3:46673083-46673102 | Msa0294660:five_prime_UTR | 30.0% | |
| AGGTTTGAAAATGGTGAAAA+AGG | - | chr2_3:46673166-46673185 | None:intergenic | 30.0% | |
| ! | TAAGGTTTGAGGTTTGAAAA+TGG | - | chr2_3:46673175-46673194 | None:intergenic | 30.0% |
| !!! | TAAGCACTTTTTTCGCAAAA+GGG | - | chr2_3:46673210-46673229 | None:intergenic | 30.0% |
| CAAAAACAAAAGGGTTTCAA+GGG | - | chr2_3:46673341-46673360 | None:intergenic | 30.0% | |
| ACAAAAACAAAAGGGTTTCA+AGG | - | chr2_3:46673342-46673361 | None:intergenic | 30.0% | |
| GAGAAATGTGTAAAACTATG+TGG | + | chr2_3:46673418-46673437 | Msa0294660:intron | 30.0% | |
| ! | GTTTAGATTCAGGAAAGTTT+TGG | + | chr2_3:46673446-46673465 | Msa0294660:intron | 30.0% |
| AAGATAATAGGAACAATGTG+AGG | + | chr2_3:46673607-46673626 | Msa0294660:CDS | 30.0% | |
| AGATAATAGGAACAATGTGA+GGG | + | chr2_3:46673608-46673627 | Msa0294660:CDS | 30.0% | |
| TATAGACCTGAAGAATCTAT+TGG | + | chr2_3:46673648-46673667 | Msa0294660:CDS | 30.0% | |
| TATACTAAGCTTGAGAATGT+AGG | + | chr2_3:46673780-46673799 | Msa0294660:CDS | 30.0% | |
| !!! | TTGCTTTAGCCTTTTGTTTT+TGG | + | chr2_3:46673884-46673903 | Msa0294660:intron | 30.0% |
| !! | CGGTATCTAATTTTAGCATT+TGG | + | chr2_3:46674123-46674142 | Msa0294660:intron | 30.0% |
| !! | ATTTTAGCATTTGGATGTGA+TGG | + | chr2_3:46674132-46674151 | Msa0294660:intron | 30.0% |
| ATAAGTCAAAATGAAACTGC+TGG | + | chr2_3:46674439-46674458 | Msa0294660:intron | 30.0% | |
| TAAGTCAAAATGAAACTGCT+GGG | + | chr2_3:46674440-46674459 | Msa0294660:intron | 30.0% | |
| TGAGAAGTCATATGCTATAT+TGG | + | chr2_3:46674613-46674632 | Msa0294660:intron | 30.0% | |
| ! | TCATTTTGTAGGTTTCTTGT+AGG | + | chr2_3:46674685-46674704 | Msa0294660:intron | 30.0% |
| ! | CTTGTGTGTTTCTTCATTTT+TGG | + | chr2_3:46675009-46675028 | Msa0294660:intron | 30.0% |
| !!! | TTTCTTCATTTTTGGTACCA+TGG | + | chr2_3:46675017-46675036 | Msa0294660:intron | 30.0% |
| GATGTCAATACATTTGCATA+AGG | - | chr2_3:46675270-46675289 | None:intergenic | 30.0% | |
| !!! | TCGTGTTATCCCTTTTTTTT+TGG | + | chr2_3:46675327-46675346 | Msa0294660:intron | 30.0% |
| !!! | TGTTATCCCTTTTTTTTTGG+TGG | + | chr2_3:46675330-46675349 | Msa0294660:intron | 30.0% |
| CATTTGTCCACCAAAAAAAA+AGG | - | chr2_3:46675340-46675359 | None:intergenic | 30.0% | |
| ! | ATCCGTTTTATCTTTTACCT+TGG | + | chr2_3:46675481-46675500 | Msa0294660:intron | 30.0% |
| TGTGAAATATCACTTGAACA+AGG | - | chr2_3:46675535-46675554 | None:intergenic | 30.0% | |
| TTATGTCAAACAACTCAAAC+AGG | - | chr2_3:46675648-46675667 | None:intergenic | 30.0% | |
| AAATATAAGCCAATCCAAAC+AGG | - | chr2_3:46675706-46675725 | None:intergenic | 30.0% | |
| ! | TTATCTGATGGCATAAGTTT+TGG | + | chr2_3:46675730-46675749 | Msa0294660:intron | 30.0% |
| ! | TATCTGATGGCATAAGTTTT+GGG | + | chr2_3:46675731-46675750 | Msa0294660:intron | 30.0% |
| !! | AAGATCATTTAGGGTCTTTT+CGG | - | chr2_3:46675986-46676005 | None:intergenic | 30.0% |
| ! | AAAGACCCTAAATGATCTTT+TGG | + | chr2_3:46675987-46676006 | Msa0294660:intron | 30.0% |
| CACTACCAAAAGATCATTTA+GGG | - | chr2_3:46675995-46676014 | None:intergenic | 30.0% | |
| ! | AACAATTTGAAGCTTTGGTT+TGG | + | chr2_3:46676063-46676082 | Msa0294660:intron | 30.0% |
| TGGTGATCTGATAAAATAAG+GGG | + | chr2_3:46676083-46676102 | Msa0294660:intron | 30.0% | |
| ACAAAATGAACACTGCTTAA+TGG | - | chr2_3:46676176-46676195 | None:intergenic | 30.0% | |
| TAAAAACATTGCATCCAATC+CGG | - | chr2_3:46676472-46676491 | None:intergenic | 30.0% | |
| !!! | TTTATTTTGACAGCAAGTCT+CGG | + | chr2_3:46676498-46676517 | Msa0294660:three_prime_UTR | 30.0% |
| TGAGTTAAGAAGAAGAACAG+AGG | - | chr2_3:46673111-46673130 | None:intergenic | 35.0% | |
| !!! | CTAAGCACTTTTTTCGCAAA+AGG | - | chr2_3:46673211-46673230 | None:intergenic | 35.0% |
| GGAACAAACAAGGTTGTTAA+AGG | + | chr2_3:46673300-46673319 | Msa0294660:CDS | 35.0% | |
| TTGAAGATGTTTCCTCAAGT+GGG | - | chr2_3:46673370-46673389 | None:intergenic | 35.0% | |
| TTTGAAGATGTTTCCTCAAG+TGG | - | chr2_3:46673371-46673390 | None:intergenic | 35.0% | |
| !!! | TGTGGGTTTTGTTTAGATTC+AGG | + | chr2_3:46673436-46673455 | Msa0294660:intron | 35.0% |
| ! | TTTATTGTTGCTGTTGTAGC+TGG | + | chr2_3:46673513-46673532 | Msa0294660:intron | 35.0% |
| AGAAGATCGAGCAAGATAAT+AGG | + | chr2_3:46673595-46673614 | Msa0294660:CDS | 35.0% | |
| GAGCACTTTGAACATCAAAA+TGG | - | chr2_3:46673719-46673738 | None:intergenic | 35.0% | |
| ! | AAAGTGCTCACACTATTGAA+GGG | + | chr2_3:46673730-46673749 | Msa0294660:CDS | 35.0% |
| !! | GTTCTGAGGATTACTATTGT+AGG | + | chr2_3:46673802-46673821 | Msa0294660:CDS | 35.0% |
| TTTGAGTATAAAGCTGCTAC+TGG | + | chr2_3:46673825-46673844 | Msa0294660:CDS | 35.0% | |
| AAAAAACTCACACAGCAACA+CGG | - | chr2_3:46673866-46673885 | None:intergenic | 35.0% | |
| ! | TTTATCGTTCTTCTAAGAGC+TGG | - | chr2_3:46674189-46674208 | None:intergenic | 35.0% |
| ACTTTAACTGAACAAGCAGA+AGG | - | chr2_3:46674310-46674329 | None:intergenic | 35.0% | |
| TCGAGATAAATGCTGGAAAT+AGG | + | chr2_3:46674338-46674357 | Msa0294660:intron | 35.0% | |
| CGAGATAAATGCTGGAAATA+GGG | + | chr2_3:46674339-46674358 | Msa0294660:intron | 35.0% | |
| GACTTATGAAAAACGATCCA+AGG | - | chr2_3:46674426-46674445 | None:intergenic | 35.0% | |
| AAGTCAAAATGAAACTGCTG+GGG | + | chr2_3:46674441-46674460 | Msa0294660:intron | 35.0% | |
| !! | AGAGTTGATGACCTATAGAT+TGG | - | chr2_3:46674530-46674549 | None:intergenic | 35.0% |
| ! | AGGTACACACTTCATTTTGT+AGG | + | chr2_3:46674674-46674693 | Msa0294660:intron | 35.0% |
| !! | TATGAGGCATTCTTTTGCTT+TGG | + | chr2_3:46674888-46674907 | Msa0294660:intron | 35.0% |
| AAAACAGATTACGCTAACCA+TGG | - | chr2_3:46675037-46675056 | None:intergenic | 35.0% | |
| GGATTGAGATAACAACGAAA+GGG | - | chr2_3:46675465-46675484 | None:intergenic | 35.0% | |
| GAAATATCACTTGAACAAGG+AGG | - | chr2_3:46675532-46675551 | None:intergenic | 35.0% | |
| TCAAACAGGTTATCAATAGC+GGG | - | chr2_3:46675634-46675653 | None:intergenic | 35.0% | |
| CTCAAACAGGTTATCAATAG+CGG | - | chr2_3:46675635-46675654 | None:intergenic | 35.0% | |
| !!! | ATAAGTTTTGGGAGTCTGTT+TGG | + | chr2_3:46675742-46675761 | Msa0294660:intron | 35.0% |
| !!! | TAAGTTTTGGGAGTCTGTTT+GGG | + | chr2_3:46675743-46675762 | Msa0294660:intron | 35.0% |
| CCACTACCAAAAGATCATTT+AGG | - | chr2_3:46675996-46676015 | None:intergenic | 35.0% | |
| ! | CCTAAATGATCTTTTGGTAG+TGG | + | chr2_3:46675993-46676012 | Msa0294660:intron | 35.0% |
| ! | GAACAATGCTTGAATTTTGC+AGG | + | chr2_3:46676350-46676369 | Msa0294660:intron | 35.0% |
| AAAGTTGCATTTCTGCATCA+TGG | - | chr2_3:46676402-46676421 | None:intergenic | 35.0% | |
| ! | TGATGCAGAAATGCAACTTT+TGG | + | chr2_3:46676402-46676421 | Msa0294660:exon | 35.0% |
| ACACAAAATAGCTACCACAT+AGG | - | chr2_3:46676433-46676452 | None:intergenic | 35.0% | |
| TGTTGTTGTACAACTTTCAC+CGG | + | chr2_3:46676450-46676469 | Msa0294660:three_prime_UTR | 35.0% | |
| !!! | TTATTTTGACAGCAAGTCTC+GGG | + | chr2_3:46676499-46676518 | Msa0294660:three_prime_UTR | 35.0% |
| TCAAGGTTTGATGTTATCTC+AGG | - | chr2_3:46676614-46676633 | None:intergenic | 35.0% | |
| TGCTGAAATGCTAAGGTTTG+AGG | - | chr2_3:46673186-46673205 | None:intergenic | 40.0% | |
| AAAGGGTTGCTGAAATGCTA+AGG | - | chr2_3:46673193-46673212 | None:intergenic | 40.0% | |
| GAAGACAAGACCAGGAAAAA+AGG | + | chr2_3:46673254-46673273 | Msa0294660:CDS | 40.0% | |
| AAGACCAGGAAAAAAGGACA+TGG | + | chr2_3:46673260-46673279 | Msa0294660:CDS | 40.0% | |
| ATGGACTCTTACACAATCAG+AGG | + | chr2_3:46673279-46673298 | Msa0294660:CDS | 40.0% | |
| CACAATCAGAGGAACAAACA+AGG | + | chr2_3:46673290-46673309 | Msa0294660:CDS | 40.0% | |
| GGGTCGGTACAAAAACAAAA+GGG | - | chr2_3:46673350-46673369 | None:intergenic | 40.0% | |
| TGGGTCGGTACAAAAACAAA+AGG | - | chr2_3:46673351-46673370 | None:intergenic | 40.0% | |
| AGACCTGAAGAATCTATTGG+TGG | + | chr2_3:46673651-46673670 | Msa0294660:CDS | 40.0% | |
| CTTCCACCAATAGATTCTTC+AGG | - | chr2_3:46673657-46673676 | None:intergenic | 40.0% | |
| AAGACAGTTTCATGGAGCTA+AGG | + | chr2_3:46673677-46673696 | Msa0294660:CDS | 40.0% | |
| ! | CAAAGTGCTCACACTATTGA+AGG | + | chr2_3:46673729-46673748 | Msa0294660:CDS | 40.0% |
| ATTAGGTCATCCGGGTTATA+AGG | - | chr2_3:46674020-46674039 | None:intergenic | 40.0% | |
| TTATAACCCGGATGACCTAA+TGG | + | chr2_3:46674019-46674038 | Msa0294660:CDS | 40.0% | |
| TGAACAAAGACTTAGCCCTA+AGG | + | chr2_3:46674212-46674231 | Msa0294660:intron | 40.0% | |
| AAAGCGATCGAGATAAATGC+TGG | + | chr2_3:46674331-46674350 | Msa0294660:intron | 40.0% | |
| ! | GCTCAAAGTCGAGATCTTTT+AGG | - | chr2_3:46674490-46674509 | None:intergenic | 40.0% |
| CGATGATTTGAAGAAACCAC+AGG | + | chr2_3:46674788-46674807 | Msa0294660:CDS | 40.0% | |
| TGATTTGAAGAAACCACAGG+CGG | + | chr2_3:46674791-46674810 | Msa0294660:CDS | 40.0% | |
| TTTGCTTTGGCCCTTTGATA+CGG | + | chr2_3:46674901-46674920 | Msa0294660:intron | 40.0% | |
| CGGATTGAGATAACAACGAA+AGG | - | chr2_3:46675466-46675485 | None:intergenic | 40.0% | |
| ATCAAGCACAAGAACTACCA+AGG | - | chr2_3:46675501-46675520 | None:intergenic | 40.0% | |
| TTAATATCTAGGGGCCTGTT+TGG | + | chr2_3:46675689-46675708 | Msa0294660:intron | 40.0% | |
| ! | CAATGCTTGAATTTTGCAGG+TGG | + | chr2_3:46676353-46676372 | Msa0294660:intron | 40.0% |
| ! | TGCAGAAATGCAACTTTTGG+TGG | + | chr2_3:46676405-46676424 | Msa0294660:three_prime_UTR | 40.0% |
| TTGTACAACTTTCACCGGAT+TGG | + | chr2_3:46676455-46676474 | Msa0294660:three_prime_UTR | 40.0% | |
| TGTGAGCGTGACGATTCATT+TGG | - | chr2_3:46673059-46673078 | None:intergenic | 45.0% | |
| AGAAGAACAGAGGAACCCTA+AGG | - | chr2_3:46673101-46673120 | None:intergenic | 45.0% | |
| GAGAGACTCAAACACACACA+TGG | + | chr2_3:46673230-46673249 | Msa0294660:exon | 45.0% | |
| !!! | GAGTCCATGTCCTTTTTTCC+TGG | - | chr2_3:46673267-46673286 | None:intergenic | 45.0% |
| !! | TTTTTGTACCGACCCACTTG+AGG | + | chr2_3:46673355-46673374 | Msa0294660:intron | 45.0% |
| AGATGTTTCCTCAAGTGGGT+CGG | - | chr2_3:46673366-46673385 | None:intergenic | 45.0% | |
| GGTGGAAGAAGACAGTTTCA+TGG | + | chr2_3:46673669-46673688 | Msa0294660:CDS | 45.0% | |
| GCTTGAGAATGTAGGTTCTG+AGG | + | chr2_3:46673788-46673807 | Msa0294660:CDS | 45.0% | |
| ATGCGAGATGCCTTATAACC+CGG | + | chr2_3:46674007-46674026 | Msa0294660:CDS | 45.0% | |
| ACCTAATGGTGCAGTGTGAA+GGG | + | chr2_3:46674033-46674052 | Msa0294660:CDS | 45.0% | |
| CTGTTATTGGAACTCTGTCC+TGG | + | chr2_3:46674272-46674291 | Msa0294660:intron | 45.0% | |
| AATGCTGGAAATAGGGAGCA+TGG | + | chr2_3:46674346-46674365 | Msa0294660:intron | 45.0% | |
| CTATCAGATCCAGGTGATAC+AGG | - | chr2_3:46674822-46674841 | None:intergenic | 45.0% | |
| ATCACCTGGATCTGATAGCA+AGG | + | chr2_3:46674824-46674843 | Msa0294660:CDS | 45.0% | |
| TTGCTTTGGCCCTTTGATAC+GGG | + | chr2_3:46674902-46674921 | Msa0294660:intron | 45.0% | |
| CTGTGATAGCCCGTATCAAA+GGG | - | chr2_3:46674914-46674933 | None:intergenic | 45.0% | |
| TCTGTGATAGCCCGTATCAA+AGG | - | chr2_3:46674915-46674934 | None:intergenic | 45.0% | |
| AAAACATACAAGGGCCCAAC+CGG | + | chr2_3:46675394-46675413 | Msa0294660:intron | 45.0% | |
| GCATTTGACTGCAGATCAAG+AGG | - | chr2_3:46675423-46675442 | None:intergenic | 45.0% | |
| AATGCTCTACCACTGAGCTA+TGG | + | chr2_3:46675438-46675457 | Msa0294660:intron | 45.0% | |
| !!! | AACTTTTGGTGGTGCCTATG+TGG | + | chr2_3:46676416-46676435 | Msa0294660:three_prime_UTR | 45.0% |
| TTCTCCACACGTGCCACATA+GGG | - | chr2_3:46673579-46673598 | None:intergenic | 50.0% | |
| ATGTGAGGGTTCGTGTGAGA+TGG | + | chr2_3:46673622-46673641 | Msa0294660:CDS | 50.0% | |
| AACTCACACAGCAACACGGT+CGG | - | chr2_3:46673862-46673881 | None:intergenic | 50.0% | |
| ACTGCACCATTAGGTCATCC+GGG | - | chr2_3:46674028-46674047 | None:intergenic | 50.0% | |
| CACTGCACCATTAGGTCATC+CGG | - | chr2_3:46674029-46674048 | None:intergenic | 50.0% | |
| GACCTAATGGTGCAGTGTGA+AGG | + | chr2_3:46674032-46674051 | Msa0294660:CDS | 50.0% | |
| ACCCTTCACACTGCACCATT+AGG | - | chr2_3:46674037-46674056 | None:intergenic | 50.0% | |
| ! | AGTGTGAAGGGTGCAAGGAT+TGG | + | chr2_3:46674045-46674064 | Msa0294660:CDS | 50.0% |
| ! | CAAGCAGAAGGCTTTGTCCT+AGG | - | chr2_3:46674298-46674317 | None:intergenic | 50.0% |
| TAGGTACCATCCTGCTTGTG+TGG | + | chr2_3:46674704-46674723 | Msa0294660:intron | 50.0% | |
| AGGTACCATCCTGCTTGTGT+GGG | + | chr2_3:46674705-46674724 | Msa0294660:intron | 50.0% | |
| ATAGTCATGCCCACACAAGC+AGG | - | chr2_3:46674717-46674736 | None:intergenic | 50.0% | |
| ! | CTCACCTTGCTATCAGATCC+AGG | - | chr2_3:46674831-46674850 | None:intergenic | 50.0% |
| ! | AGATCAAGAGGTCACCGGTT+GGG | - | chr2_3:46675411-46675430 | None:intergenic | 50.0% |
| ACTGCAGATCAAGAGGTCAC+CGG | - | chr2_3:46675416-46675435 | None:intergenic | 50.0% | |
| ATCTAGGGGCCTGTTTGGAT+TGG | + | chr2_3:46675694-46675713 | Msa0294660:intron | 50.0% | |
| CACATGGCGAAGACAAGACC+AGG | + | chr2_3:46673246-46673265 | Msa0294660:exon | 55.0% | |
| CTTCTCCACACGTGCCACAT+AGG | - | chr2_3:46673580-46673599 | None:intergenic | 55.0% | |
| ACTCACACAGCAACACGGTC+GGG | - | chr2_3:46673861-46673880 | None:intergenic | 55.0% | |
| TTGGAACTCTGTCCTGGCCT+AGG | + | chr2_3:46674278-46674297 | Msa0294660:intron | 55.0% | |
| ! | AGAAGGCTTTGTCCTAGGCC+AGG | - | chr2_3:46674293-46674312 | None:intergenic | 55.0% |
| TCATGCCCACACAAGCAGGA+TGG | - | chr2_3:46674713-46674732 | None:intergenic | 55.0% | |
| GATACAGGAAATGCCGCCTG+TGG | - | chr2_3:46674807-46674826 | None:intergenic | 55.0% | |
| GCGGCATTTCCTGTATCACC+TGG | + | chr2_3:46674810-46674829 | Msa0294660:CDS | 55.0% | |
| CAGATCAAGAGGTCACCGGT+TGG | - | chr2_3:46675412-46675431 | None:intergenic | 55.0% | |
| CGAAAGGGTCCATAGCTCAG+TGG | - | chr2_3:46675450-46675469 | None:intergenic | 55.0% | |
| ! | TTTTGCAGGTGGAGCCGAAG+CGG | + | chr2_3:46676364-46676383 | Msa0294660:intron | 55.0% |
| !! | GGTGGCTTGCTCGTGTCAGA+AGG | - | chr2_3:46673558-46673577 | None:intergenic | 60.0% |
| CACGAGCAAGCCACCCTATG+TGG | + | chr2_3:46673563-46673582 | Msa0294660:CDS | 60.0% | |
| TCCACACGTGCCACATAGGG+TGG | - | chr2_3:46673576-46673595 | None:intergenic | 60.0% | |
| ! | GGTGCAGTGTGAAGGGTGCA+AGG | + | chr2_3:46674040-46674059 | Msa0294660:CDS | 60.0% |
| GGTCCTCTCTTTCGCCGCTT+CGG | - | chr2_3:46676381-46676400 | None:intergenic | 60.0% | |
| GCCACCCTATGTGGCACGTG+TGG | + | chr2_3:46673572-46673591 | Msa0294660:CDS | 65.0% | |
| GAGCCGAAGCGGCGAAAGAG+AGG | + | chr2_3:46676375-46676394 | Msa0294660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 46673055 | 46676710 | 46673055 | ID=Msa0294660;Name=Msa0294660 |
| chr2_3 | mRNA | 46673055 | 46676710 | 46673055 | ID=Msa0294660-mRNA-1;Parent=Msa0294660;Name=Msa0294660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=194|1|1|1|1|1|5|306|218 |
| chr2_3 | exon | 46673055 | 46673321 | 46673055 | ID=Msa0294660-mRNA-1:exon:14546;Parent=Msa0294660-mRNA-1 |
| chr2_3 | exon | 46673532 | 46673874 | 46673532 | ID=Msa0294660-mRNA-1:exon:14547;Parent=Msa0294660-mRNA-1 |
| chr2_3 | exon | 46673998 | 46674066 | 46673998 | ID=Msa0294660-mRNA-1:exon:14548;Parent=Msa0294660-mRNA-1 |
| chr2_3 | exon | 46674707 | 46674845 | 46674707 | ID=Msa0294660-mRNA-1:exon:14549;Parent=Msa0294660-mRNA-1 |
| chr2_3 | exon | 46676372 | 46676710 | 46676372 | ID=Msa0294660-mRNA-1:exon:14550;Parent=Msa0294660-mRNA-1 |
| chr2_3 | five_prime_UTR | 46673055 | 46673248 | 46673055 | ID=Msa0294660-mRNA-1:five_prime_utr;Parent=Msa0294660-mRNA-1 |
| chr2_3 | CDS | 46673249 | 46673321 | 46673249 | ID=Msa0294660-mRNA-1:cds;Parent=Msa0294660-mRNA-1 |
| chr2_3 | CDS | 46673532 | 46673874 | 46673532 | ID=Msa0294660-mRNA-1:cds;Parent=Msa0294660-mRNA-1 |
| chr2_3 | CDS | 46673998 | 46674066 | 46673998 | ID=Msa0294660-mRNA-1:cds;Parent=Msa0294660-mRNA-1 |
| chr2_3 | CDS | 46674707 | 46674845 | 46674707 | ID=Msa0294660-mRNA-1:cds;Parent=Msa0294660-mRNA-1 |
| chr2_3 | CDS | 46676372 | 46676404 | 46676372 | ID=Msa0294660-mRNA-1:cds;Parent=Msa0294660-mRNA-1 |
| chr2_3 | three_prime_UTR | 46676405 | 46676710 | 46676405 | ID=Msa0294660-mRNA-1:three_prime_utr;Parent=Msa0294660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
