Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296170 | XP_039686096.1 | 84.688 | 320 | 17 | 12 | 1 | 309 | 1 | 299 | 1.71e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296170 | Q2HVP9 | 84.688 | 320 | 17 | 12 | 1 | 309 | 1 | 299 | 8.18e-155 | 444 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0296170 | TF | NOZZLE |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296170 | MtrunA17_Chr2g0318721 | 84.688 | 320 | 17 | 12 | 1 | 309 | 1 | 299 | 1.58e-158 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCACTGTTTCAGCTTA+TGG | 0.174976 | 2_3:+49035149 | Msa0296170:CDS |
| CACCAATTGTGGGAAATTTC+AGG | 0.195712 | 2_3:-49035106 | None:intergenic |
| TTATTCTGATTCTGATTGTT+AGG | 0.266258 | 2_3:-49033628 | None:intergenic |
| TGTGGGAAATTTCAGGTTCT+TGG | 0.268740 | 2_3:-49035099 | None:intergenic |
| CAATAACAATAACACTGTTT+TGG | 0.275143 | 2_3:+49033543 | Msa0296170:CDS |
| GGTTGAGAGTGATGAAGATT+TGG | 0.342640 | 2_3:-49033751 | None:intergenic |
| AGCTCTTTAGAAGGCTCAAA+AGG | 0.358727 | 2_3:-49033718 | None:intergenic |
| GGTGGTGGTAACTATGGATA+TGG | 0.361187 | 2_3:+49033667 | Msa0296170:CDS |
| AGTGTTATTGTTATTGTTGT+TGG | 0.365355 | 2_3:-49033536 | None:intergenic |
| AACCTGAAATTTCCCACAAT+TGG | 0.372059 | 2_3:+49035104 | Msa0296170:CDS |
| TCAACTCCTACACCTCTTAG+TGG | 0.420541 | 2_3:-49033331 | None:intergenic |
| ATCAGAATCAGAATAACAAC+AGG | 0.420921 | 2_3:+49033635 | Msa0296170:CDS |
| ATTGAAGAGAGCTCTTTAGA+AGG | 0.427011 | 2_3:-49033727 | None:intergenic |
| AGAAGCAGCTTCACCAATTG+TGG | 0.451010 | 2_3:-49035117 | None:intergenic |
| TCATGAACATGATGATGATT+AGG | 0.458805 | 2_3:-49034535 | None:intergenic |
| GTTGTTGGTGGTGGTAACTA+TGG | 0.459219 | 2_3:+49033661 | Msa0296170:CDS |
| AGAACAGAAGGTTGAGGTTG+AGG | 0.460961 | 2_3:-49034577 | None:intergenic |
| GCTTGCTCAAACGTTGGTGC+TGG | 0.461104 | 2_3:+49033595 | Msa0296170:CDS |
| GAGAGGAGCTAGAAACCCTT+TGG | 0.463191 | 2_3:+49034504 | Msa0296170:CDS |
| AGGTTGTTGCTGTGCATAGG+AGG | 0.469491 | 2_3:+49034994 | Msa0296170:CDS |
| ACCTTGAGGCAAAGATCAAA+AGG | 0.476163 | 2_3:-49033772 | None:intergenic |
| GTTAGAGAAGCAGAGGATAG+AGG | 0.478278 | 2_3:+49033357 | Msa0296170:CDS |
| GAAGCAGAGGATAGAGGCAT+TGG | 0.478285 | 2_3:+49033363 | Msa0296170:CDS |
| TCATCAAGATTGTGCTGAGT+TGG | 0.482620 | 2_3:-49034610 | None:intergenic |
| GGTAACTATGGATATGGATC+TGG | 0.489747 | 2_3:+49033673 | Msa0296170:CDS |
| GTTGGAGCTTGCTCAAACGT+TGG | 0.497141 | 2_3:+49033589 | Msa0296170:CDS |
| TCAGAAAACACGTTTGAATG+AGG | 0.499550 | 2_3:+49034468 | Msa0296170:intron |
| AGGAGGGGAAGTTCTTCATC+AGG | 0.500625 | 2_3:+49035011 | Msa0296170:CDS |
| AACAGGGTCGTTGTTGGTGG+TGG | 0.507033 | 2_3:+49033652 | Msa0296170:CDS |
| AATAACAACAGGGTCGTTGT+TGG | 0.507101 | 2_3:+49033646 | Msa0296170:CDS |
| TTTGAGCAAGCTCCAACAAA+AGG | 0.507919 | 2_3:-49033583 | None:intergenic |
| GCTCAAACGTTGGTGCTGGA+TGG | 0.518767 | 2_3:+49033599 | Msa0296170:CDS |
| CTAGAAACCCTTTGGAGGCA+TGG | 0.527762 | 2_3:+49034512 | Msa0296170:CDS |
| GAGGAGAGTAATGTAATGAG+AGG | 0.529842 | 2_3:+49034487 | Msa0296170:CDS |
| TGATGTTGAGGAAACTGAAA+TGG | 0.535711 | 2_3:-49033484 | None:intergenic |
| AACAACAGGGTCGTTGTTGG+TGG | 0.551873 | 2_3:+49033649 | Msa0296170:CDS |
| AAGTTCTTCATCAGGAGGGA+AGG | 0.555848 | 2_3:+49035019 | Msa0296170:CDS |
| TTGAACAGTTAGAGAAGCAG+AGG | 0.558284 | 2_3:+49033350 | Msa0296170:CDS |
| GATTAGGCCATGCCTCCAAA+GGG | 0.558465 | 2_3:-49034519 | None:intergenic |
| GGATAAGCAGAAAGAACAGA+AGG | 0.566886 | 2_3:-49034589 | None:intergenic |
| GCTCTTTAGAAGGCTCAAAA+GGG | 0.569253 | 2_3:-49033717 | None:intergenic |
| TGATTAGGCCATGCCTCCAA+AGG | 0.575637 | 2_3:-49034520 | None:intergenic |
| GGTTGTTGCTGTGCATAGGA+GGG | 0.577962 | 2_3:+49034995 | Msa0296170:CDS |
| CTCACTGTTTCAGCTTATGG+AGG | 0.584570 | 2_3:+49035152 | Msa0296170:CDS |
| ATTTGCTGTTGATGATGTTG+AGG | 0.585953 | 2_3:-49033496 | None:intergenic |
| TTGGTGAGAAAAGCTGAAGC+TGG | 0.589265 | 2_3:+49033382 | Msa0296170:CDS |
| GTTGTTGATGAGGATGATCA+AGG | 0.590020 | 2_3:-49033417 | None:intergenic |
| TTGTGTTGTAAAGTGTGTGG+AGG | 0.590206 | 2_3:+49034974 | Msa0296170:intron |
| GCAGAAAGAACAGAAGGTTG+AGG | 0.592292 | 2_3:-49034583 | None:intergenic |
| AGGAGCTAGAAACCCTTTGG+AGG | 0.592534 | 2_3:+49034507 | Msa0296170:CDS |
| TGGAGGTTGTTGCTGTGCAT+AGG | 0.593913 | 2_3:+49034991 | Msa0296170:CDS |
| GTTGTTGCTGTGCATAGGAG+GGG | 0.608997 | 2_3:+49034996 | Msa0296170:CDS |
| GAAGCAGCTTCACCAATTGT+GGG | 0.613866 | 2_3:-49035116 | None:intergenic |
| GGAAACTGAAATGGCCCAGT+TGG | 0.639292 | 2_3:-49033475 | None:intergenic |
| AGGGGAAGTTCTTCATCAGG+AGG | 0.645014 | 2_3:+49035014 | Msa0296170:CDS |
| AACTCAGCACAATCTTGATG+AGG | 0.646299 | 2_3:+49034612 | Msa0296170:CDS |
| GGGGAAGTTCTTCATCAGGA+GGG | 0.656793 | 2_3:+49035015 | Msa0296170:CDS |
| TCAGAATCAGAATAACAACA+GGG | 0.760807 | 2_3:+49033636 | Msa0296170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATATTATACCTTG+AGG | - | chr2_3:49033789-49033808 | None:intergenic | 15.0% |
| !!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_3:49034119-49034138 | Msa0296170:intron | 15.0% |
| !! | TTAACATTAATATCAACAAA+AGG | - | chr2_3:49034228-49034247 | None:intergenic | 15.0% |
| !!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_3:49034716-49034735 | Msa0296170:intron | 15.0% |
| !! | ATTAAATTAAACATTGTATC+TGG | - | chr2_3:49034856-49034875 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTTCTAAGTTT+AGG | + | chr2_3:49034898-49034917 | Msa0296170:intron | 15.0% |
| !!! | TTTCAATTTTTCTAAGTTTA+GGG | + | chr2_3:49034899-49034918 | Msa0296170:intron | 15.0% |
| !! | TTTCTGAATTAAAAAATTGA+TGG | + | chr2_3:49034932-49034951 | Msa0296170:intron | 15.0% |
| !! | ATAAAATATATTATACCTTG+AGG | - | chr2_3:49033789-49033808 | None:intergenic | 15.0% |
| !!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_3:49034119-49034138 | Msa0296170:intron | 15.0% |
| !! | TTAACATTAATATCAACAAA+AGG | - | chr2_3:49034228-49034247 | None:intergenic | 15.0% |
| !!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_3:49034716-49034735 | Msa0296170:intron | 15.0% |
| !! | ATTAAATTAAACATTGTATC+TGG | - | chr2_3:49034856-49034875 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTTCTAAGTTT+AGG | + | chr2_3:49034898-49034917 | Msa0296170:intron | 15.0% |
| !!! | TTTCAATTTTTCTAAGTTTA+GGG | + | chr2_3:49034899-49034918 | Msa0296170:intron | 15.0% |
| !! | TTTCTGAATTAAAAAATTGA+TGG | + | chr2_3:49034932-49034951 | Msa0296170:intron | 15.0% |
| !! | AGAAAATAACAAAACATAGA+AGG | - | chr2_3:49034015-49034034 | None:intergenic | 20.0% |
| !! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_3:49034091-49034110 | None:intergenic | 20.0% |
| !! | TCAAAAAAAAAATCCACAAA+AGG | - | chr2_3:49034325-49034344 | None:intergenic | 20.0% |
| !! | TTAACACTAATATCAACAAA+AGG | - | chr2_3:49034356-49034375 | None:intergenic | 20.0% |
| !! | TTAGAAAAATTGAAAACACT+TGG | - | chr2_3:49034894-49034913 | None:intergenic | 20.0% |
| !!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_3:49035062-49035081 | Msa0296170:CDS | 20.0% |
| !! | AGAAAATAACAAAACATAGA+AGG | - | chr2_3:49034015-49034034 | None:intergenic | 20.0% |
| !! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_3:49034091-49034110 | None:intergenic | 20.0% |
| !! | TCAAAAAAAAAATCCACAAA+AGG | - | chr2_3:49034325-49034344 | None:intergenic | 20.0% |
| !! | TTAACACTAATATCAACAAA+AGG | - | chr2_3:49034356-49034375 | None:intergenic | 20.0% |
| !! | TTAGAAAAATTGAAAACACT+TGG | - | chr2_3:49034894-49034913 | None:intergenic | 20.0% |
| !!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_3:49035062-49035081 | Msa0296170:CDS | 20.0% |
| ! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_3:49033281-49033300 | Msa0296170:CDS | 25.0% |
| ! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_3:49033292-49033311 | Msa0296170:CDS | 25.0% |
| !! | AGTGTTATTGTTATTGTTGT+TGG | - | chr2_3:49033539-49033558 | None:intergenic | 25.0% |
| !! | CAATAACAATAACACTGTTT+TGG | + | chr2_3:49033543-49033562 | Msa0296170:CDS | 25.0% |
| ! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_3:49033631-49033650 | None:intergenic | 25.0% |
| ! | ACATTGATATGATTAGATGA+TGG | + | chr2_3:49033870-49033889 | Msa0296170:intron | 25.0% |
| ! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_3:49033281-49033300 | Msa0296170:CDS | 25.0% |
| ! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_3:49033292-49033311 | Msa0296170:CDS | 25.0% |
| !! | AGTGTTATTGTTATTGTTGT+TGG | - | chr2_3:49033539-49033558 | None:intergenic | 25.0% |
| !! | CAATAACAATAACACTGTTT+TGG | + | chr2_3:49033543-49033562 | Msa0296170:CDS | 25.0% |
| ! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_3:49033631-49033650 | None:intergenic | 25.0% |
| ! | ACATTGATATGATTAGATGA+TGG | + | chr2_3:49033870-49033889 | Msa0296170:intron | 25.0% |
| GAAAACCAAGCAAAAAACAA+AGG | + | chr2_3:49033280-49033299 | Msa0296170:CDS | 30.0% | |
| !!! | AACAATAACACTGTTTTGGT+TGG | + | chr2_3:49033547-49033566 | Msa0296170:CDS | 30.0% |
| ATCAGAATCAGAATAACAAC+AGG | + | chr2_3:49033635-49033654 | Msa0296170:CDS | 30.0% | |
| TCAGAATCAGAATAACAACA+GGG | + | chr2_3:49033636-49033655 | Msa0296170:CDS | 30.0% | |
| AAAAAATCCACAAAAGGTAG+AGG | - | chr2_3:49034319-49034338 | None:intergenic | 30.0% | |
| ! | TCATGAACATGATGATGATT+AGG | - | chr2_3:49034538-49034557 | None:intergenic | 30.0% |
| ! | CATCATGTTCATGATTTTCT+TGG | + | chr2_3:49034544-49034563 | Msa0296170:CDS | 30.0% |
| ! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_3:49034971-49034990 | Msa0296170:intron | 30.0% |
| GAAAACCAAGCAAAAAACAA+AGG | + | chr2_3:49033280-49033299 | Msa0296170:CDS | 30.0% | |
| !!! | AACAATAACACTGTTTTGGT+TGG | + | chr2_3:49033547-49033566 | Msa0296170:CDS | 30.0% |
| ATCAGAATCAGAATAACAAC+AGG | + | chr2_3:49033635-49033654 | Msa0296170:CDS | 30.0% | |
| TCAGAATCAGAATAACAACA+GGG | + | chr2_3:49033636-49033655 | Msa0296170:CDS | 30.0% | |
| AAAAAATCCACAAAAGGTAG+AGG | - | chr2_3:49034319-49034338 | None:intergenic | 30.0% | |
| ! | TCATGAACATGATGATGATT+AGG | - | chr2_3:49034538-49034557 | None:intergenic | 30.0% |
| ! | CATCATGTTCATGATTTTCT+TGG | + | chr2_3:49034544-49034563 | Msa0296170:CDS | 30.0% |
| ! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_3:49034971-49034990 | Msa0296170:intron | 30.0% |
| !!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_3:49033278-49033297 | None:intergenic | 35.0% |
| !!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_3:49033288-49033307 | None:intergenic | 35.0% |
| !!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_3:49033325-49033344 | None:intergenic | 35.0% |
| ! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_3:49033325-49033344 | Msa0296170:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGTTGATG+AGG | - | chr2_3:49033430-49033449 | None:intergenic | 35.0% |
| !!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_3:49033442-49033461 | Msa0296170:CDS | 35.0% |
| TGATGTTGAGGAAACTGAAA+TGG | - | chr2_3:49033487-49033506 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_3:49033499-49033518 | None:intergenic | 35.0% |
| ! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_3:49033571-49033590 | Msa0296170:CDS | 35.0% |
| ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_3:49033730-49033749 | None:intergenic | 35.0% | |
| ! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_3:49034309-49034328 | Msa0296170:intron | 35.0% |
| TCAGAAAACACGTTTGAATG+AGG | + | chr2_3:49034468-49034487 | Msa0296170:intron | 35.0% | |
| ! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_3:49034547-49034566 | Msa0296170:CDS | 35.0% |
| AACCTGAAATTTCCCACAAT+TGG | + | chr2_3:49035104-49035123 | Msa0296170:CDS | 35.0% | |
| !!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_3:49033278-49033297 | None:intergenic | 35.0% |
| !!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_3:49033288-49033307 | None:intergenic | 35.0% |
| !!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_3:49033325-49033344 | None:intergenic | 35.0% |
| ! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_3:49033325-49033344 | Msa0296170:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGTTGATG+AGG | - | chr2_3:49033430-49033449 | None:intergenic | 35.0% |
| !!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_3:49033442-49033461 | Msa0296170:CDS | 35.0% |
| TGATGTTGAGGAAACTGAAA+TGG | - | chr2_3:49033487-49033506 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_3:49033499-49033518 | None:intergenic | 35.0% |
| ! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_3:49033571-49033590 | Msa0296170:CDS | 35.0% |
| ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_3:49033730-49033749 | None:intergenic | 35.0% | |
| ! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_3:49034309-49034328 | Msa0296170:intron | 35.0% |
| TCAGAAAACACGTTTGAATG+AGG | + | chr2_3:49034468-49034487 | Msa0296170:intron | 35.0% | |
| ! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_3:49034547-49034566 | Msa0296170:CDS | 35.0% |
| AACCTGAAATTTCCCACAAT+TGG | + | chr2_3:49035104-49035123 | Msa0296170:CDS | 35.0% | |
| GCACCAAAAAAACCACTAAG+AGG | + | chr2_3:49033319-49033338 | Msa0296170:CDS | 40.0% | |
| TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_3:49033350-49033369 | Msa0296170:CDS | 40.0% | |
| ! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_3:49033420-49033439 | None:intergenic | 40.0% |
| ! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_3:49033460-49033479 | Msa0296170:CDS | 40.0% |
| ! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_3:49033461-49033480 | Msa0296170:CDS | 40.0% |
| !!! | AACACTGTTTTGGTTGGTTC+TGG | + | chr2_3:49033553-49033572 | Msa0296170:CDS | 40.0% |
| TTTGAGCAAGCTCCAACAAA+AGG | - | chr2_3:49033586-49033605 | None:intergenic | 40.0% | |
| AATAACAACAGGGTCGTTGT+TGG | + | chr2_3:49033646-49033665 | Msa0296170:CDS | 40.0% | |
| GGTAACTATGGATATGGATC+TGG | + | chr2_3:49033673-49033692 | Msa0296170:CDS | 40.0% | |
| ! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_3:49033720-49033739 | None:intergenic | 40.0% |
| ! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_3:49033721-49033740 | None:intergenic | 40.0% |
| GGTTGAGAGTGATGAAGATT+TGG | - | chr2_3:49033754-49033773 | None:intergenic | 40.0% | |
| ! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_3:49033771-49033790 | Msa0296170:CDS | 40.0% |
| ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_3:49033775-49033794 | None:intergenic | 40.0% | |
| GAGGAGAGTAATGTAATGAG+AGG | + | chr2_3:49034487-49034506 | Msa0296170:CDS | 40.0% | |
| GGATAAGCAGAAAGAACAGA+AGG | - | chr2_3:49034592-49034611 | None:intergenic | 40.0% | |
| TCATCAAGATTGTGCTGAGT+TGG | - | chr2_3:49034613-49034632 | None:intergenic | 40.0% | |
| AACTCAGCACAATCTTGATG+AGG | + | chr2_3:49034612-49034631 | Msa0296170:CDS | 40.0% | |
| TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_3:49034974-49034993 | Msa0296170:intron | 40.0% | |
| ! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_3:49035034-49035053 | Msa0296170:CDS | 40.0% |
| !! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_3:49035102-49035121 | None:intergenic | 40.0% |
| CACCAATTGTGGGAAATTTC+AGG | - | chr2_3:49035109-49035128 | None:intergenic | 40.0% | |
| TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_3:49035149-49035168 | Msa0296170:CDS | 40.0% | |
| GCACCAAAAAAACCACTAAG+AGG | + | chr2_3:49033319-49033338 | Msa0296170:CDS | 40.0% | |
| TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_3:49033350-49033369 | Msa0296170:CDS | 40.0% | |
| ! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_3:49033420-49033439 | None:intergenic | 40.0% |
| ! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_3:49033460-49033479 | Msa0296170:CDS | 40.0% |
| ! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_3:49033461-49033480 | Msa0296170:CDS | 40.0% |
| !!! | AACACTGTTTTGGTTGGTTC+TGG | + | chr2_3:49033553-49033572 | Msa0296170:CDS | 40.0% |
| TTTGAGCAAGCTCCAACAAA+AGG | - | chr2_3:49033586-49033605 | None:intergenic | 40.0% | |
| AATAACAACAGGGTCGTTGT+TGG | + | chr2_3:49033646-49033665 | Msa0296170:CDS | 40.0% | |
| GGTAACTATGGATATGGATC+TGG | + | chr2_3:49033673-49033692 | Msa0296170:CDS | 40.0% | |
| ! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_3:49033720-49033739 | None:intergenic | 40.0% |
| ! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_3:49033721-49033740 | None:intergenic | 40.0% |
| GGTTGAGAGTGATGAAGATT+TGG | - | chr2_3:49033754-49033773 | None:intergenic | 40.0% | |
| ! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_3:49033771-49033790 | Msa0296170:CDS | 40.0% |
| ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_3:49033775-49033794 | None:intergenic | 40.0% | |
| GAGGAGAGTAATGTAATGAG+AGG | + | chr2_3:49034487-49034506 | Msa0296170:CDS | 40.0% | |
| GGATAAGCAGAAAGAACAGA+AGG | - | chr2_3:49034592-49034611 | None:intergenic | 40.0% | |
| TCATCAAGATTGTGCTGAGT+TGG | - | chr2_3:49034613-49034632 | None:intergenic | 40.0% | |
| AACTCAGCACAATCTTGATG+AGG | + | chr2_3:49034612-49034631 | Msa0296170:CDS | 40.0% | |
| TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_3:49034974-49034993 | Msa0296170:intron | 40.0% | |
| ! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_3:49035034-49035053 | Msa0296170:CDS | 40.0% |
| !! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_3:49035102-49035121 | None:intergenic | 40.0% |
| CACCAATTGTGGGAAATTTC+AGG | - | chr2_3:49035109-49035128 | None:intergenic | 40.0% | |
| TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_3:49035149-49035168 | Msa0296170:CDS | 40.0% | |
| TCAACTCCTACACCTCTTAG+TGG | - | chr2_3:49033334-49033353 | None:intergenic | 45.0% | |
| GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_3:49033357-49033376 | Msa0296170:CDS | 45.0% | |
| TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_3:49033382-49033401 | Msa0296170:CDS | 45.0% | |
| !! | GTTGTTGGTGGTGGTAACTA+TGG | + | chr2_3:49033661-49033680 | Msa0296170:CDS | 45.0% |
| ! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_3:49033667-49033686 | Msa0296170:CDS | 45.0% |
| AGAACAGAAGGTTGAGGTTG+AGG | - | chr2_3:49034580-49034599 | None:intergenic | 45.0% | |
| GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_3:49034586-49034605 | None:intergenic | 45.0% | |
| AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_3:49035019-49035038 | Msa0296170:CDS | 45.0% | |
| GAAGCAGCTTCACCAATTGT+GGG | - | chr2_3:49035119-49035138 | None:intergenic | 45.0% | |
| AGAAGCAGCTTCACCAATTG+TGG | - | chr2_3:49035120-49035139 | None:intergenic | 45.0% | |
| CTCACTGTTTCAGCTTATGG+AGG | + | chr2_3:49035152-49035171 | Msa0296170:CDS | 45.0% | |
| TCAACTCCTACACCTCTTAG+TGG | - | chr2_3:49033334-49033353 | None:intergenic | 45.0% | |
| GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_3:49033357-49033376 | Msa0296170:CDS | 45.0% | |
| TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_3:49033382-49033401 | Msa0296170:CDS | 45.0% | |
| !! | GTTGTTGGTGGTGGTAACTA+TGG | + | chr2_3:49033661-49033680 | Msa0296170:CDS | 45.0% |
| ! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_3:49033667-49033686 | Msa0296170:CDS | 45.0% |
| AGAACAGAAGGTTGAGGTTG+AGG | - | chr2_3:49034580-49034599 | None:intergenic | 45.0% | |
| GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_3:49034586-49034605 | None:intergenic | 45.0% | |
| AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_3:49035019-49035038 | Msa0296170:CDS | 45.0% | |
| GAAGCAGCTTCACCAATTGT+GGG | - | chr2_3:49035119-49035138 | None:intergenic | 45.0% | |
| AGAAGCAGCTTCACCAATTG+TGG | - | chr2_3:49035120-49035139 | None:intergenic | 45.0% | |
| CTCACTGTTTCAGCTTATGG+AGG | + | chr2_3:49035152-49035171 | Msa0296170:CDS | 45.0% | |
| !! | TTAAATTAAATAATTAGATA+TGG | - | chr2_3:49034780-49034799 | None:intergenic | 5.0% |
| !! | TTAAATTAAATAATTAGATA+TGG | - | chr2_3:49034780-49034799 | None:intergenic | 5.0% |
| !! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_3:49033272-49033291 | None:intergenic | 50.0% |
| ! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_3:49033363-49033382 | Msa0296170:CDS | 50.0% |
| GGAAACTGAAATGGCCCAGT+TGG | - | chr2_3:49033478-49033497 | None:intergenic | 50.0% | |
| ! | GTTGGAGCTTGCTCAAACGT+TGG | + | chr2_3:49033589-49033608 | Msa0296170:CDS | 50.0% |
| AACAACAGGGTCGTTGTTGG+TGG | + | chr2_3:49033649-49033668 | Msa0296170:CDS | 50.0% | |
| GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_3:49034504-49034523 | Msa0296170:CDS | 50.0% | |
| AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_3:49034507-49034526 | Msa0296170:CDS | 50.0% | |
| ! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_3:49034512-49034531 | Msa0296170:CDS | 50.0% |
| GATTAGGCCATGCCTCCAAA+GGG | - | chr2_3:49034522-49034541 | None:intergenic | 50.0% | |
| TGATTAGGCCATGCCTCCAA+AGG | - | chr2_3:49034523-49034542 | None:intergenic | 50.0% | |
| TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_3:49034991-49035010 | Msa0296170:CDS | 50.0% | |
| AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_3:49034994-49035013 | Msa0296170:CDS | 50.0% | |
| GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_3:49034995-49035014 | Msa0296170:CDS | 50.0% | |
| GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_3:49034996-49035015 | Msa0296170:CDS | 50.0% | |
| AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_3:49035011-49035030 | Msa0296170:CDS | 50.0% | |
| AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_3:49035014-49035033 | Msa0296170:CDS | 50.0% | |
| GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_3:49035015-49035034 | Msa0296170:CDS | 50.0% | |
| !! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_3:49033272-49033291 | None:intergenic | 50.0% |
| ! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_3:49033363-49033382 | Msa0296170:CDS | 50.0% |
| GGAAACTGAAATGGCCCAGT+TGG | - | chr2_3:49033478-49033497 | None:intergenic | 50.0% | |
| ! | GTTGGAGCTTGCTCAAACGT+TGG | + | chr2_3:49033589-49033608 | Msa0296170:CDS | 50.0% |
| AACAACAGGGTCGTTGTTGG+TGG | + | chr2_3:49033649-49033668 | Msa0296170:CDS | 50.0% | |
| GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_3:49034504-49034523 | Msa0296170:CDS | 50.0% | |
| AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_3:49034507-49034526 | Msa0296170:CDS | 50.0% | |
| ! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_3:49034512-49034531 | Msa0296170:CDS | 50.0% |
| GATTAGGCCATGCCTCCAAA+GGG | - | chr2_3:49034522-49034541 | None:intergenic | 50.0% | |
| TGATTAGGCCATGCCTCCAA+AGG | - | chr2_3:49034523-49034542 | None:intergenic | 50.0% | |
| TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_3:49034991-49035010 | Msa0296170:CDS | 50.0% | |
| AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_3:49034994-49035013 | Msa0296170:CDS | 50.0% | |
| GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_3:49034995-49035014 | Msa0296170:CDS | 50.0% | |
| GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_3:49034996-49035015 | Msa0296170:CDS | 50.0% | |
| AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_3:49035011-49035030 | Msa0296170:CDS | 50.0% | |
| AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_3:49035014-49035033 | Msa0296170:CDS | 50.0% | |
| GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_3:49035015-49035034 | Msa0296170:CDS | 50.0% | |
| GCTTGCTCAAACGTTGGTGC+TGG | + | chr2_3:49033595-49033614 | Msa0296170:CDS | 55.0% | |
| !! | GCTCAAACGTTGGTGCTGGA+TGG | + | chr2_3:49033599-49033618 | Msa0296170:CDS | 55.0% |
| ! | AACAGGGTCGTTGTTGGTGG+TGG | + | chr2_3:49033652-49033671 | Msa0296170:CDS | 55.0% |
| GCTTGCTCAAACGTTGGTGC+TGG | + | chr2_3:49033595-49033614 | Msa0296170:CDS | 55.0% | |
| !! | GCTCAAACGTTGGTGCTGGA+TGG | + | chr2_3:49033599-49033618 | Msa0296170:CDS | 55.0% |
| ! | AACAGGGTCGTTGTTGGTGG+TGG | + | chr2_3:49033652-49033671 | Msa0296170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 49033265 | 49035226 | 49033265 | ID=Msa0296170;Name=Msa0296170 |
| chr2_3 | mRNA | 49033265 | 49035226 | 49033265 | ID=Msa0296170-mRNA-1;Parent=Msa0296170;Name=Msa0296170-mRNA-1;_AED=0.00;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|309 |
| chr2_3 | exon | 49033265 | 49033792 | 49033265 | ID=Msa0296170-mRNA-1:exon:15487;Parent=Msa0296170-mRNA-1 |
| chr2_3 | exon | 49034472 | 49034633 | 49034472 | ID=Msa0296170-mRNA-1:exon:15488;Parent=Msa0296170-mRNA-1 |
| chr2_3 | exon | 49034987 | 49035226 | 49034987 | ID=Msa0296170-mRNA-1:exon:15489;Parent=Msa0296170-mRNA-1 |
| chr2_3 | CDS | 49033265 | 49033792 | 49033265 | ID=Msa0296170-mRNA-1:cds;Parent=Msa0296170-mRNA-1 |
| chr2_3 | CDS | 49034472 | 49034633 | 49034472 | ID=Msa0296170-mRNA-1:cds;Parent=Msa0296170-mRNA-1 |
| chr2_3 | CDS | 49034987 | 49035226 | 49034987 | ID=Msa0296170-mRNA-1:cds;Parent=Msa0296170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
