AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296340 MtrunA17_Chr2g0316481 83.871 93 6 2 1 84 306 398 4.96e-44 151
Msa0296340 MtrunA17_Chr2g0316791 82.796 93 7 2 1 84 306 398 1.16e-43 150
Msa0296340 MtrunA17_Chr2g0316771 82.292 96 6 4 1 86 86 180 6.51e-43 142
Msa0296340 MtrunA17_Chr2g0316191 84.043 94 5 3 1 84 306 399 6.52e-43 148
Msa0296340 MtrunA17_Chr2g0311251 80.645 93 9 2 1 84 240 332 4.93e-42 144
Msa0296340 MtrunA17_Chr2g0311241 80.645 93 9 2 1 84 330 422 2.08e-41 144
Msa0296340 MtrunA17_Chr2g0316141 79.787 94 9 3 1 84 177 270 3.18e-41 140
Msa0296340 MtrunA17_Chr2g0316181 79.787 94 9 3 1 84 177 270 3.18e-41 140
Msa0296340 MtrunA17_Chr2g0316831 81.720 93 8 2 1 84 342 434 6.13e-41 143
Msa0296340 MtrunA17_Chr8g0361441 56.923 65 26 1 74 136 659 723 2.37e-17 79.3
Msa0296340 MtrunA17_Chr3g0093161 44.545 110 52 4 36 136 605 714 3.47e-17 79.0
Msa0296340 MtrunA17_Chr4g0048631 68.000 50 16 0 87 136 700 749 6.64e-17 78.2
Msa0296340 MtrunA17_Chr3g0092301 44.144 111 53 4 36 137 38 148 1.06e-16 75.5
Msa0296340 MtrunA17_Chr4g0042401 57.353 68 27 1 75 140 657 724 2.02e-16 76.6
Msa0296340 MtrunA17_Chr4g0042431 55.556 63 23 1 89 151 1 58 7.58e-16 71.2
Msa0296340 MtrunA17_Chr8g0361161 68.000 50 15 1 87 136 212 260 1.14e-15 73.9
Msa0296340 MtrunA17_Chr8g0361141 68.000 50 15 1 87 136 684 732 2.06e-15 73.9
Msa0296340 MtrunA17_Chr8g0361281 62.000 50 19 0 87 136 681 730 2.72e-15 73.6
Msa0296340 MtrunA17_Chr4g0042441 66.667 48 16 0 87 134 668 715 2.87e-15 73.6
Msa0296340 MtrunA17_Chr3g0078531 54.688 64 27 1 75 136 681 744 3.06e-15 73.2
Msa0296340 MtrunA17_Chr8g0360201 54.688 64 26 2 75 136 560 622 4.11e-15 72.8
Msa0296340 MtrunA17_Chr3g0078551 51.562 64 29 1 75 136 678 741 5.80e-15 72.4
Msa0296340 MtrunA17_Chr4g0042351 58.065 62 24 1 77 136 609 670 8.44e-15 72.0
Msa0296340 MtrunA17_Chr4g0023111 60.000 50 20 0 87 136 882 931 1.00e-14 72.0
Msa0296340 MtrunA17_Chr8g0357651 58.824 51 21 0 87 137 638 688 1.45e-14 71.2
Msa0296340 MtrunA17_Chr3g0078521 62.000 50 19 0 87 136 687 736 1.47e-14 71.2
Msa0296340 MtrunA17_Chr3g0078541 62.000 50 19 0 87 136 698 747 1.48e-14 71.2
Msa0296340 MtrunA17_Chr2g0323231 55.769 52 23 0 87 138 346 397 1.70e-14 70.9
Msa0296340 MtrunA17_Chr4g0042341 50.649 77 32 2 75 145 677 753 1.87e-14 71.2
Msa0296340 MtrunA17_Chr4g0023221 62.000 50 19 0 87 136 898 947 2.32e-14 70.9
Msa0296340 MtrunA17_Chr2g0280761 60.417 48 19 0 89 136 1 48 3.40e-14 67.0
Msa0296340 MtrunA17_Chr4g0048801 56.863 51 22 0 87 137 686 736 3.79e-14 70.1
Msa0296340 MtrunA17_Chr4g0042361 53.125 64 28 1 75 136 693 756 5.62e-14 69.7
Msa0296340 MtrunA17_Chr5g0394011 62.000 50 19 0 87 136 519 568 7.47e-14 69.3
Msa0296340 MtrunA17_Chr3g0081071 64.000 50 18 0 87 136 97 146 7.64e-14 67.8
Msa0296340 MtrunA17_Chr5g0428111 56.452 62 25 1 75 134 657 718 1.39e-13 68.6
Msa0296340 MtrunA17_Chr2g0316811 89.744 39 1 2 1 36 295 333 2.06e-13 67.4
Msa0296340 MtrunA17_Chr4g0042381 54.839 62 26 1 77 136 609 670 2.51e-13 67.8
Msa0296340 MtrunA17_Chr4g0042391 54.839 62 26 1 77 136 609 670 2.51e-13 67.8
Msa0296340 MtrunA17_Chr8g0357691 54.902 51 23 0 87 137 646 696 2.57e-13 67.8
Msa0296340 MtrunA17_Chr8g0354271 58.000 50 21 0 87 136 503 552 2.61e-13 67.8
Msa0296340 MtrunA17_Chr8g0357831 56.000 50 22 0 87 136 360 409 3.06e-13 67.4
Msa0296340 MtrunA17_Chr7g0236471 54.902 51 23 0 87 137 508 558 3.58e-13 67.4
Msa0296340 MtrunA17_Chr3g0081001 60.000 50 20 0 87 136 511 560 4.14e-13 67.0
Msa0296340 MtrunA17_Chr2g0280711 62.500 48 18 0 87 134 698 745 5.68e-13 66.6
Msa0296340 MtrunA17_Chr8g0361431 60.000 50 20 0 87 136 652 701 6.67e-13 66.6
Msa0296340 MtrunA17_Chr2g0280701 50.000 66 28 1 86 151 667 727 6.69e-13 66.6
Msa0296340 MtrunA17_Chr7g0236691 54.902 51 23 0 87 137 668 718 8.02e-13 66.2
Msa0296340 MtrunA17_Chr7g0236641 56.863 51 22 0 87 137 693 743 1.01e-12 65.9
Msa0296340 MtrunA17_Chr7g0236561 54.902 51 23 0 87 137 673 723 1.14e-12 65.9
Msa0296340 MtrunA17_Chr7g0236531 56.863 51 22 0 87 137 206 256 1.33e-12 65.1
Msa0296340 MtrunA17_Chr5g0422921 62.500 48 18 0 87 134 666 713 1.39e-12 65.5
Msa0296340 MtrunA17_Chr4g0055011 56.863 51 22 0 87 137 239 289 1.42e-12 65.1
Msa0296340 MtrunA17_Chr8g0357661 52.000 50 24 0 87 136 31 80 1.45e-12 63.2
Msa0296340 MtrunA17_Chr2g0280801 60.000 50 19 1 87 136 695 743 1.55e-12 65.5
Msa0296340 MtrunA17_Chr2g0280791 60.000 50 19 1 87 136 689 737 1.61e-12 65.5
Msa0296340 MtrunA17_Chr7g0236231 56.000 50 22 0 87 136 686 735 1.66e-12 65.5
Msa0296340 MtrunA17_Chr3g0081011 39.394 99 33 1 38 136 485 556 1.70e-12 65.5
Msa0296340 MtrunA17_Chr8g0340111 54.000 50 23 0 87 136 673 722 1.85e-12 65.1
Msa0296340 MtrunA17_Chr8g0357631 52.000 50 24 0 87 136 636 685 1.93e-12 65.1
Msa0296340 MtrunA17_Chr8g0340051 54.000 50 23 0 87 136 197 246 2.03e-12 64.7
Msa0296340 MtrunA17_Chr7g0236341 56.863 51 21 1 87 137 686 735 2.20e-12 65.1
Msa0296340 MtrunA17_Chr7g0236551 54.902 51 23 0 87 137 656 706 2.30e-12 65.1
Msa0296340 MtrunA17_Chr2g0280831 60.000 50 19 1 87 136 263 311 2.44e-12 64.7
Msa0296340 MtrunA17_Chr8g0357761 54.000 50 23 0 87 136 648 697 2.80e-12 64.7
Msa0296340 MtrunA17_Chr3g0081031 71.795 39 11 0 87 125 520 558 3.36e-12 64.3
Msa0296340 MtrunA17_Chr2g0280681 54.000 50 23 0 87 136 669 718 3.59e-12 64.3
Msa0296340 MtrunA17_Chr8g0357711 54.000 50 23 0 87 136 645 694 3.95e-12 64.3
Msa0296340 MtrunA17_Chr8g0340081 52.000 50 24 0 87 136 675 724 4.40e-12 64.3
Msa0296340 MtrunA17_Chr3g0119041 47.692 65 32 1 74 136 493 557 4.57e-12 63.9
Msa0296340 MtrunA17_Chr8g0340071 54.000 50 23 0 87 136 671 720 4.88e-12 63.9
Msa0296340 MtrunA17_Chr7g0236651 54.902 51 23 0 87 137 653 703 5.14e-12 63.9
Msa0296340 MtrunA17_Chr2g0281241 50.000 52 26 0 84 135 219 270 5.28e-12 63.2
Msa0296340 MtrunA17_Chr2g0280781 54.000 50 23 0 87 136 678 727 5.37e-12 63.9
Msa0296340 MtrunA17_Chr3g0082941 58.000 50 21 0 87 136 341 390 5.42e-12 63.5
Msa0296340 MtrunA17_Chr1g0206351 47.826 69 34 1 70 136 502 570 5.54e-12 63.9
Msa0296340 MtrunA17_Chr8g0361251 54.000 50 23 0 87 136 674 723 5.78e-12 63.9
Msa0296340 MtrunA17_Chr5g0394021 56.000 50 22 0 87 136 489 538 6.28e-12 63.5
Msa0296340 MtrunA17_Chr8g0354331 44.000 75 38 1 87 161 268 338 6.41e-12 63.5
Msa0296340 MtrunA17_Chr1g0206361 52.542 59 26 1 80 136 502 560 6.72e-12 63.5
Msa0296340 MtrunA17_Chr8g0361341 52.000 50 24 0 87 136 6 55 8.04e-12 60.5
Msa0296340 MtrunA17_Chr8g0340091 54.000 50 23 0 87 136 700 749 8.68e-12 63.2
Msa0296340 MtrunA17_Chr7g0236201 58.824 51 20 1 87 137 638 687 1.08e-11 63.2
Msa0296340 MtrunA17_Chr7g0236121 58.824 51 20 1 87 137 672 721 1.08e-11 63.2
Msa0296340 MtrunA17_Chr3g0084441 56.000 50 22 0 87 136 674 723 1.25e-11 62.8
Msa0296340 MtrunA17_Chr8g0357881 44.928 69 38 0 68 136 625 693 1.28e-11 62.8
Msa0296340 MtrunA17_Chr5g0428101 60.417 48 19 0 87 134 669 716 1.40e-11 62.8
Msa0296340 MtrunA17_Chr8g0354441 58.000 50 21 0 87 136 518 567 1.45e-11 62.8
Msa0296340 MtrunA17_Chr8g0354421 58.000 50 21 0 87 136 531 580 1.63e-11 62.4
Msa0296340 MtrunA17_Chr8g0354431 58.000 50 21 0 87 136 510 559 2.11e-11 62.0
Msa0296340 MtrunA17_Chr3g0098781 54.000 50 23 0 87 136 79 128 2.13e-11 60.8
Msa0296340 MtrunA17_Chr4g0048661 52.830 53 25 0 87 139 205 257 2.63e-11 61.6
Msa0296340 MtrunA17_Chr4g0048791 54.902 51 23 0 87 137 700 750 2.63e-11 62.0
Msa0296340 MtrunA17_Chr4g0048741 56.863 51 22 0 87 137 700 750 2.68e-11 62.0
Msa0296340 MtrunA17_Chr2g0280751 56.000 50 21 1 87 136 694 742 2.76e-11 62.0
Msa0296340 MtrunA17_Chr3g0084451 54.000 50 23 0 87 136 674 723 2.77e-11 62.0
Msa0296340 MtrunA17_Chr8g0354391 56.000 50 22 0 87 136 102 151 2.83e-11 60.8
Msa0296340 MtrunA17_Chr3g0084691 54.000 50 23 0 87 136 690 739 2.94e-11 61.6
Msa0296340 MtrunA17_Chr3g0084631 52.000 50 24 0 87 136 31 80 3.17e-11 59.3
Msa0296340 MtrunA17_Chr4g0048581 56.000 50 21 1 87 136 699 747 3.92e-11 61.2
Msa0296340 MtrunA17_Chr8g0358161 52.000 50 24 0 87 136 214 263 4.38e-11 60.8
Msa0296340 MtrunA17_Chr3g0084661 52.000 50 24 0 87 136 201 250 5.02e-11 60.8
Msa0296340 MtrunA17_Chr4g0048731 56.863 51 22 0 87 137 214 264 5.27e-11 60.5
Msa0296340 MtrunA17_Chr8g0358121 50.000 50 25 0 87 136 630 679 5.49e-11 60.8
Msa0296340 MtrunA17_Chr4g0048711 56.863 51 22 0 87 137 97 147 6.50e-11 60.5
Msa0296340 MtrunA17_Chr4g0048711 54.902 51 23 0 87 137 254 304 9.99e-11 59.7
Msa0296340 MtrunA17_Chr8g0358101 42.029 69 40 0 68 136 613 681 6.89e-11 60.5
Msa0296340 MtrunA17_Chr8g0357981 42.029 69 40 0 68 136 454 522 7.57e-11 60.5
Msa0296340 MtrunA17_Chr8g0358071 42.029 69 40 0 68 136 625 693 7.96e-11 60.5
Msa0296340 MtrunA17_Chr8g0357901 46.000 50 27 0 88 137 17 66 9.08e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296340 AT1G65790.1 66.667 51 17 0 87 137 686 736 3.83e-17 79.3
Msa0296340 AT1G65800.1 66.667 51 17 0 87 137 690 740 4.38e-17 79.0
Msa0296340 AT4G21366.1 60.417 48 19 0 89 136 1 48 2.33e-15 69.3
Msa0296340 AT4G21380.1 62.745 51 19 0 87 137 693 743 6.95e-15 72.8
Msa0296340 AT1G11350.1 48.529 68 28 1 76 136 661 728 7.29e-14 69.7
Msa0296340 AT4G21390.2 62.745 51 18 1 87 137 696 745 8.61e-13 66.6
Msa0296340 AT4G27290.1 54.000 50 23 0 87 136 632 681 1.50e-12 65.9
Msa0296340 AT4G27290.2 54.000 50 23 0 87 136 678 727 1.52e-12 65.9
Msa0296340 AT4G27300.1 58.824 51 21 0 87 137 667 717 1.76e-12 65.9
Msa0296340 AT4G03230.3 54.000 50 23 0 87 136 692 741 3.02e-12 65.1
Msa0296340 AT4G03230.8 54.000 50 23 0 87 136 699 748 3.02e-12 65.1
Msa0296340 AT4G03230.7 54.000 50 23 0 87 136 700 749 3.02e-12 65.1
Msa0296340 AT4G03230.2 54.000 50 23 0 87 136 757 806 3.06e-12 65.1
Msa0296340 AT4G03230.6 54.000 50 23 0 87 136 757 806 3.06e-12 65.1
Msa0296340 AT4G03230.5 54.000 50 23 0 87 136 785 834 3.07e-12 65.1
Msa0296340 AT4G03230.4 54.000 50 23 0 87 136 857 906 3.10e-12 65.1
Msa0296340 AT4G03230.1 54.000 50 23 0 87 136 857 906 3.10e-12 65.1
Msa0296340 AT4G21390.1 62.000 50 18 1 87 136 696 744 3.48e-12 64.7
Msa0296340 AT1G11330.3 52.727 55 26 0 87 141 691 745 3.57e-12 64.7
Msa0296340 AT4G23230.1 48.485 66 29 1 86 151 503 563 5.47e-12 64.3
Msa0296340 AT4G23180.2 52.941 51 24 0 87 137 515 565 8.55e-12 63.5
Msa0296340 AT1G11340.3 52.941 51 22 1 87 137 750 798 9.17e-12 63.5
Msa0296340 AT1G11410.2 52.941 51 22 1 87 137 575 623 1.24e-11 63.2
Msa0296340 AT1G11410.3 52.941 51 22 1 87 137 666 714 1.27e-11 63.2
Msa0296340 AT4G11900.9 54.000 50 23 0 87 136 635 684 1.27e-11 63.2
Msa0296340 AT1G11410.1 52.941 51 22 1 87 137 690 738 1.28e-11 63.2
Msa0296340 AT1G11410.4 52.941 51 22 1 87 137 697 745 1.28e-11 63.2
Msa0296340 AT1G11340.1 50.980 51 23 1 87 137 682 730 1.39e-11 63.2
Msa0296340 AT1G11330.1 54.000 50 23 0 87 136 689 738 1.40e-11 63.2
Msa0296340 AT1G11330.2 54.000 50 23 0 87 136 691 740 1.41e-11 63.2
Msa0296340 AT4G23260.2 46.269 67 33 2 74 137 480 546 1.41e-11 63.2
Msa0296340 AT4G23260.1 46.269 67 33 2 74 137 491 557 1.46e-11 63.2
Msa0296340 AT4G11900.1 54.000 50 23 0 87 136 704 753 1.50e-11 63.2
Msa0296340 AT1G61610.2 52.941 51 23 1 87 137 692 741 2.34e-11 62.4
Msa0296340 AT4G23180.1 42.308 78 38 2 87 160 515 589 2.49e-11 62.4
Msa0296340 AT4G23250.1 53.846 52 23 1 87 137 526 577 4.18e-11 61.6
Msa0296340 AT4G23250.3 53.846 52 23 1 87 137 521 572 5.35e-11 61.2
Msa0296340 AT4G23250.2 53.846 52 23 1 87 137 521 572 5.65e-11 61.2

Find 42 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATAGCCTATGAGATTA+TGG 0.216894 2_3:-49512198 None:intergenic
TTGTTGATGGAGATTATATC+AGG 0.300324 2_3:+49512139 Msa0296340:CDS
AGCCTATGAGATTATGGGTT+TGG 0.338961 2_3:-49512192 None:intergenic
CTAGAGTGATGAACATTCAT+TGG 0.344426 2_3:-49508246 None:intergenic
GCTGGGAAAGCTTTCATTCT+CGG 0.359246 2_3:+49512448 Msa0296340:CDS
TACATAGCCTATGAGATTAT+GGG 0.371378 2_3:-49512197 None:intergenic
CTGGGAAAGCTTTCATTCTC+GGG 0.379126 2_3:+49512449 Msa0296340:CDS
AAAGCTTTCATTCTCGGGGC+TGG 0.389358 2_3:+49512454 Msa0296340:CDS
TTCATTCTCGGGGCTGGTGG+TGG 0.389485 2_3:+49512460 Msa0296340:CDS
TGGCCTCCTTAGGTTCTGGC+TGG 0.395231 2_3:+49512430 Msa0296340:intron
AAACTATCGGTAGCATATTC+CGG 0.398606 2_3:-49512079 None:intergenic
TTGTCATCTGCAGTTCCATC+TGG 0.420339 2_3:+49508291 Msa0296340:CDS
CAGATGACAGATCGACCTTT+CGG 0.431010 2_3:+49508430 Msa0296340:CDS
CAGAGTTTGTTGAGAGGAAG+AGG 0.433418 2_3:+49508339 Msa0296340:CDS
AGAGTTTGTTGAGAGGAAGA+GGG 0.471781 2_3:+49508340 Msa0296340:CDS
AACCAAACCCATAATCTCAT+AGG 0.475819 2_3:+49512190 Msa0296340:CDS
TCAAGAGAAGACTGCCAGAC+TGG 0.487626 2_3:+49508392 Msa0296340:CDS
ATAACCTAAGTGATCGATGC+AGG 0.488676 2_3:-49512536 None:intergenic
AAATCCGATGTCTTCAGCTT+AGG 0.501333 2_3:+49512112 Msa0296340:CDS
AGCATAAGCAGCAACCAGTC+TGG 0.506609 2_3:-49508406 None:intergenic
TTTGACTGGAAATCAAGGTC+AGG 0.507215 2_3:+49508476 Msa0296340:CDS
ATGTGTGTGCAGTGGTTACA+TGG 0.528877 2_3:+49512054 Msa0296340:intron
GCTTTCATTCTCGGGGCTGG+TGG 0.529392 2_3:+49512457 Msa0296340:CDS
TTCATCACTCTAGTAACAAA+GGG 0.529921 2_3:+49508256 Msa0296340:CDS
GATTTCCAGTCAAAACATCA+AGG 0.539193 2_3:-49508467 None:intergenic
GTTCATCACTCTAGTAACAA+AGG 0.552728 2_3:+49508255 Msa0296340:CDS
GGCCTCCTTAGGTTCTGGCT+GGG 0.552975 2_3:+49512431 Msa0296340:intron
CAACCCTGCATCGATCACTT+AGG 0.568682 2_3:+49512532 Msa0296340:CDS
TGACAGATCGACCTTTCGGA+TGG 0.584524 2_3:+49508434 Msa0296340:CDS
TGGGAAAGCTTTCATTCTCG+GGG 0.589684 2_3:+49512450 Msa0296340:CDS
TGTTGATGGAGATTATATCA+GGG 0.592032 2_3:+49512140 Msa0296340:CDS
GTTTGCTGATCAACAGCTGA+TGG 0.595102 2_3:+49508368 Msa0296340:CDS
ATATCAGGGAAGAGAAGCAT+AGG 0.597003 2_3:+49512154 Msa0296340:CDS
GTGCAGTGGTTACATGGCAC+CGG 0.599100 2_3:+49512060 Msa0296340:intron
TAACCTAAGTGATCGATGCA+GGG 0.640649 2_3:-49512535 None:intergenic
GTGTCAAATGATGCTCCAGA+TGG 0.641802 2_3:-49508306 None:intergenic
GGAACACTGAGCTTCTGATG+AGG 0.643810 2_3:+49512509 Msa0296340:CDS
GTTAGACAATTCCATCCGAA+AGG 0.645675 2_3:-49508445 None:intergenic
AACACCTAAGCTGAAGACAT+CGG 0.647933 2_3:-49512116 None:intergenic
TACTATCAGAGTTTGTTGAG+AGG 0.661163 2_3:+49508333 Msa0296340:CDS
AGAGATCTTCACAAGCATGA+CGG 0.662886 2_3:-49513801 None:intergenic
AGAGAGATCAGAATGTACAA+AGG 0.666700 2_3:+49512488 Msa0296340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTATTACATTACAAT+AGG - chr2_3:49509412-49509431 None:intergenic 10.0%
!!! TTTTAATGACAATATTTTTT+CGG - chr2_3:49510081-49510100 None:intergenic 10.0%
!!! TTTTTATCAATCAATTTTAT+TGG - chr2_3:49512344-49512363 None:intergenic 10.0%
!! AGAAAAGAAAATATAAAAAT+CGG - chr2_3:49512773-49512792 None:intergenic 10.0%
!!! AAATTTATTAATAAAAGCAT+AGG + chr2_3:49513341-49513360 Msa0296340:intron 10.0%
!!! ATATGAAAATTTAATTTCAA+AGG + chr2_3:49513757-49513776 Msa0296340:intron 10.0%
!!! ATTACAGAATTAATAGATTT+TGG + chr2_3:49508640-49508659 Msa0296340:intron 15.0%
!! AAAAATATACATCAATACAT+TGG - chr2_3:49508760-49508779 None:intergenic 15.0%
!!! TATTTTTTCGGTTTTTAATT+AGG - chr2_3:49510069-49510088 None:intergenic 15.0%
!!! CAATTTCTTTTAAATTTTGA+AGG - chr2_3:49510985-49511004 None:intergenic 15.0%
!! ATGAACATCAATTAAAAATT+TGG + chr2_3:49511407-49511426 Msa0296340:intron 15.0%
!!! AATTAAAAATTTGGAATTTC+AGG + chr2_3:49511416-49511435 Msa0296340:intron 15.0%
!!! ATTAAAAATTTGGAATTTCA+GGG + chr2_3:49511417-49511436 Msa0296340:intron 15.0%
!!! AAATTTTAGGATTTAAATCT+CGG - chr2_3:49511871-49511890 None:intergenic 15.0%
!! AGATTTAAATCCTAAAATTT+CGG + chr2_3:49511871-49511890 Msa0296340:intron 15.0%
!!! TTTTACTGAAAATAAACTAT+CGG - chr2_3:49512095-49512114 None:intergenic 15.0%
!!! GAAATTCAAATTTTTTTTTC+AGG + chr2_3:49512292-49512311 Msa0296340:intron 15.0%
!! AAATTGATTGATAAAAACAT+AGG + chr2_3:49512347-49512366 Msa0296340:intron 15.0%
!! GAAATAAAGAAAAAAAATAG+TGG - chr2_3:49513286-49513305 None:intergenic 15.0%
!!! ACAATGTAGTATTTTTTTAT+TGG + chr2_3:49513443-49513462 Msa0296340:intron 15.0%
!!! TTGGAATCTAAGTTTTAATA+TGG - chr2_3:49508741-49508760 None:intergenic 20.0%
!! AATAGGAGATATTCTTTAAT+AGG - chr2_3:49509395-49509414 None:intergenic 20.0%
!!! TTTTAGATTGATAAAAGTCA+AGG - chr2_3:49509870-49509889 None:intergenic 20.0%
!!! AATTTATTTTTCGAATGGAA+TGG + chr2_3:49509935-49509954 Msa0296340:intron 20.0%
!!! ATTTATTTTTCGAATGGAAT+GGG + chr2_3:49509936-49509955 Msa0296340:intron 20.0%
!! TTAGATCAAAATCTCATATA+GGG - chr2_3:49510627-49510646 None:intergenic 20.0%
!! AAATCACAAACCAATATAAA+AGG + chr2_3:49510789-49510808 Msa0296340:intron 20.0%
!!! TTCTATTTTACTTTTGAGAA+GGG - chr2_3:49510823-49510842 None:intergenic 20.0%
!!! TTTCTATTTTACTTTTGAGA+AGG - chr2_3:49510824-49510843 None:intergenic 20.0%
!! AACAATCTAATTAGACTTAT+TGG - chr2_3:49511631-49511650 None:intergenic 20.0%
!!! AATCTAGTAATTCATTTTTC+AGG - chr2_3:49511766-49511785 None:intergenic 20.0%
!! TGAAAAATGAATTACTAGAT+TGG + chr2_3:49511765-49511784 Msa0296340:intron 20.0%
!! TTTGATCAATCTAATCATAT+TGG + chr2_3:49512635-49512654 Msa0296340:intron 20.0%
!! TTGATCAATCTAATCATATT+GGG + chr2_3:49512636-49512655 Msa0296340:intron 20.0%
!!! GAGGATAGTATTTTTTATAT+AGG + chr2_3:49512694-49512713 Msa0296340:intron 20.0%
!!! TTGATCATGTATATTTTATG+TGG + chr2_3:49512929-49512948 Msa0296340:intron 20.0%
!! AGATTACAAATATCATACTT+AGG - chr2_3:49512955-49512974 None:intergenic 20.0%
! TTGGTTCATATATTTCTTTC+TGG + chr2_3:49508539-49508558 Msa0296340:intron 25.0%
!! AAGTTTCTCATACACATTTT+AGG + chr2_3:49508589-49508608 Msa0296340:intron 25.0%
!! AGTTTCTCATACACATTTTA+GGG + chr2_3:49508590-49508609 Msa0296340:intron 25.0%
!! ACAGAATTAATAGATTTTGG+TGG + chr2_3:49508643-49508662 Msa0296340:intron 25.0%
! CTAATTGTAAGAGTTGAATA+GGG - chr2_3:49508792-49508811 None:intergenic 25.0%
! TCTAATTGTAAGAGTTGAAT+AGG - chr2_3:49508793-49508812 None:intergenic 25.0%
! AACATTATGGTTACATTACA+TGG - chr2_3:49508883-49508902 None:intergenic 25.0%
! TATGTACTCATTGAACATTA+TGG - chr2_3:49508896-49508915 None:intergenic 25.0%
!!! GAAAATAAGAAGACTTGTTT+TGG + chr2_3:49509019-49509038 Msa0296340:intron 25.0%
! TGAAGAATTCTCAGTTAAAA+GGG - chr2_3:49509188-49509207 None:intergenic 25.0%
! ATGAAGAATTCTCAGTTAAA+AGG - chr2_3:49509189-49509208 None:intergenic 25.0%
! TTCGAAAAATAAATTCCATC+TGG - chr2_3:49509930-49509949 None:intergenic 25.0%
!!! GATGGAATTTATTTTTCGAA+TGG + chr2_3:49509930-49509949 Msa0296340:intron 25.0%
! TAGATCAAAATCTCATATAG+GGG - chr2_3:49510626-49510645 None:intergenic 25.0%
! GTTAGATCAAAATCTCATAT+AGG - chr2_3:49510628-49510647 None:intergenic 25.0%
!!! ATGAGATTTTGATCTAACTA+TGG + chr2_3:49510630-49510649 Msa0296340:intron 25.0%
! AAAAAGAAAGTAGTCTTTGT+TGG + chr2_3:49510699-49510718 Msa0296340:intron 25.0%
! TTATCTGACAGTAAAGTAAA+TGG - chr2_3:49511174-49511193 None:intergenic 25.0%
! ATTGTTGACAAGTTAAAAAC+TGG - chr2_3:49511261-49511280 None:intergenic 25.0%
!!! CAATTTTGTTAATGATAGTG+TGG - chr2_3:49511302-49511321 None:intergenic 25.0%
! CACACTATCATTAACAAAAT+TGG + chr2_3:49511300-49511319 Msa0296340:intron 25.0%
! ATCATTAACAAAATTGGAGA+AGG + chr2_3:49511306-49511325 Msa0296340:intron 25.0%
! TATTAAGACATTATGAAGTG+AGG + chr2_3:49511368-49511387 Msa0296340:intron 25.0%
!! CAAAGATGTTTTTCTTTTTG+TGG + chr2_3:49511733-49511752 Msa0296340:intron 25.0%
! AATCCTAAAATTTCGGATTT+CGG + chr2_3:49511878-49511897 Msa0296340:intron 25.0%
!!! TTTTTCAGGCTTGAAAATTA+TGG + chr2_3:49512306-49512325 Msa0296340:intron 25.0%
! AAATGTAAATTCATAGCATG+AGG + chr2_3:49512675-49512694 Msa0296340:intron 25.0%
! TTATTCAGACACATAAAAGT+CGG - chr2_3:49512857-49512876 None:intergenic 25.0%
!! ATCTGTATTATTTCTTCCAT+TGG + chr2_3:49512971-49512990 Msa0296340:intron 25.0%
!!! TTTTTTCTTTATTTCGAGCT+TGG + chr2_3:49513291-49513310 Msa0296340:intron 25.0%
!!! TCGAATTATTTTTATACGCA+TGG - chr2_3:49513598-49513617 None:intergenic 25.0%
! ATAAAAATAATTCGATCGAG+AGG + chr2_3:49513603-49513622 Msa0296340:intron 25.0%
!! TTTGTGTTTGATTTCAAACA+AGG - chr2_3:49513725-49513744 None:intergenic 25.0%
TTCATCACTCTAGTAACAAA+GGG + chr2_3:49508256-49508275 Msa0296340:CDS 30.0%
TGTGTATGAGAAACTTACAT+AGG - chr2_3:49508585-49508604 None:intergenic 30.0%
!!! TACACATTTTAGGGTAGTTT+TGG + chr2_3:49508599-49508618 Msa0296340:intron 30.0%
ATGTTTACTCTAGTGTTACA+AGG + chr2_3:49508677-49508696 Msa0296340:intron 30.0%
ACTCTTACAATTAGAGATCA+AGG + chr2_3:49508798-49508817 Msa0296340:intron 30.0%
TATGGTTACATTACATGGAT+AGG - chr2_3:49508878-49508897 None:intergenic 30.0%
!!! AGACTTGTTTTGGAAGTTAT+TGG + chr2_3:49509029-49509048 Msa0296340:intron 30.0%
TCTCAGTTAAAAGGGAATAT+TGG - chr2_3:49509180-49509199 None:intergenic 30.0%
TGAGAATTCTTCATTGCTAT+TGG + chr2_3:49509195-49509214 Msa0296340:intron 30.0%
CAACTGAAATATTAACCCTA+TGG + chr2_3:49509278-49509297 Msa0296340:intron 30.0%
GGTACATTATAAGCAATGAT+TGG - chr2_3:49509310-49509329 None:intergenic 30.0%
TAATGTACCCTGTTAGTTAT+AGG + chr2_3:49509321-49509340 Msa0296340:intron 30.0%
CTAACAACCTATAACTAACA+GGG - chr2_3:49509331-49509350 None:intergenic 30.0%
TCTAACAACCTATAACTAAC+AGG - chr2_3:49509332-49509351 None:intergenic 30.0%
GAACACTTAGTTCATTCAAT+CGG - chr2_3:49509482-49509501 None:intergenic 30.0%
TTTATCAAGATCGGACTTTA+TGG - chr2_3:49509727-49509746 None:intergenic 30.0%
AGCCAAATGTTTATCAAGAT+CGG - chr2_3:49509736-49509755 None:intergenic 30.0%
!!! AAAATTTTGACTCAACCTGA+TGG - chr2_3:49509780-49509799 None:intergenic 30.0%
TAGATTGATAAAAGTCAAGG+TGG - chr2_3:49509867-49509886 None:intergenic 30.0%
TGTGACAATAACAAAAGTCA+AGG - chr2_3:49510181-49510200 None:intergenic 30.0%
! TGAAATTGAGAGGTATGAAA+GGG + chr2_3:49510414-49510433 Msa0296340:intron 30.0%
GCAAGACTTATATGTTAGAA+TGG + chr2_3:49510536-49510555 Msa0296340:intron 30.0%
! TCTAACTATGGTTTTCTGTT+TGG + chr2_3:49510642-49510661 Msa0296340:intron 30.0%
! CAAAGACTACTTTCTTTTTG+TGG - chr2_3:49510698-49510717 None:intergenic 30.0%
! GGAAACTACACCTTTTATAT+TGG - chr2_3:49510802-49510821 None:intergenic 30.0%
CTACTATATATGTGACAATG+TGG + chr2_3:49510905-49510924 Msa0296340:intron 30.0%
AATGTGGTTCAATTTCTTTG+AGG + chr2_3:49510921-49510940 Msa0296340:intron 30.0%
ATTATTGTCAATACTGTGTC+CGG - chr2_3:49511047-49511066 None:intergenic 30.0%
AAAGAAGATCATCAAAACAG+TGG + chr2_3:49511210-49511229 Msa0296340:intron 30.0%
AAGAAGATCATCAAAACAGT+GGG + chr2_3:49511211-49511230 Msa0296340:intron 30.0%
ATTAACAAAATTGGAGAAGG+TGG + chr2_3:49511309-49511328 Msa0296340:intron 30.0%
ATGCAATTTACCTTGTATAC+AGG - chr2_3:49511342-49511361 None:intergenic 30.0%
ATACATGCTTAATAGTAGCT+TGG + chr2_3:49511582-49511601 Msa0296340:intron 30.0%
TGGATCCATACCAAAAATAA+AGG - chr2_3:49511611-49511630 None:intergenic 30.0%
ACATTATATGTGGAATTGCT+AGG + chr2_3:49511801-49511820 Msa0296340:intron 30.0%
CATTATATGTGGAATTGCTA+GGG + chr2_3:49511802-49511821 Msa0296340:intron 30.0%
ATTATATGTGGAATTGCTAG+GGG + chr2_3:49511803-49511822 Msa0296340:intron 30.0%
ATCAAAACAAAGGAAACACA+AGG + chr2_3:49511924-49511943 Msa0296340:intron 30.0%
TACACATGTTCTCCTTATTA+AGG + chr2_3:49512006-49512025 Msa0296340:intron 30.0%
TTCTCCTTATTAAGGCAATA+GGG + chr2_3:49512014-49512033 Msa0296340:intron 30.0%
! TTGTTGATGGAGATTATATC+AGG + chr2_3:49512139-49512158 Msa0296340:CDS 30.0%
! TGTTGATGGAGATTATATCA+GGG + chr2_3:49512140-49512159 Msa0296340:CDS 30.0%
TACATAGCCTATGAGATTAT+GGG - chr2_3:49512200-49512219 None:intergenic 30.0%
TTACATAGCCTATGAGATTA+TGG - chr2_3:49512201-49512220 None:intergenic 30.0%
GCTTGAAAATTATGGAAAGA+AGG + chr2_3:49512314-49512333 Msa0296340:intron 30.0%
AGACTAACGCTATATCAAAA+AGG - chr2_3:49512592-49512611 None:intergenic 30.0%
! TCTAATCATATTGGGTTTTC+TGG + chr2_3:49512644-49512663 Msa0296340:intron 30.0%
!! TATACATATGGTGTTGATGT+CGG - chr2_3:49512742-49512761 None:intergenic 30.0%
TCGGAAACAGTATATACATA+TGG - chr2_3:49512754-49512773 None:intergenic 30.0%
ATTATCTTGTATTCCAATCG+AGG - chr2_3:49512884-49512903 None:intergenic 30.0%
GAATACAAGATAATCAGACA+CGG + chr2_3:49512890-49512909 Msa0296340:intron 30.0%
!! TGGTGTGATAATTTTGTTTG+TGG + chr2_3:49513105-49513124 Msa0296340:intron 30.0%
!! TTCTCAGTTTTGATAGAATG+TGG + chr2_3:49513131-49513150 Msa0296340:intron 30.0%
AACAAATTAACAACAGCGAT+TGG - chr2_3:49513185-49513204 None:intergenic 30.0%
ATACTACATTGTCAATCTTC+TGG - chr2_3:49513435-49513454 None:intergenic 30.0%
!! TCATTGGTTTGAAGTTTAGA+CGG - chr2_3:49513484-49513503 None:intergenic 30.0%
AAAACCATCTTATGCCAAAT+AGG + chr2_3:49513629-49513648 Msa0296340:intron 30.0%
GTTCATCACTCTAGTAACAA+AGG + chr2_3:49508255-49508274 Msa0296340:CDS 35.0%
!! TACTATCAGAGTTTGTTGAG+AGG + chr2_3:49508333-49508352 Msa0296340:CDS 35.0%
!!! TCTAACCTTGATGTTTTGAC+TGG + chr2_3:49508462-49508481 Msa0296340:CDS 35.0%
GATTTCCAGTCAAAACATCA+AGG - chr2_3:49508470-49508489 None:intergenic 35.0%
!!! GATGTTTTGACTGGAAATCA+AGG + chr2_3:49508471-49508490 Msa0296340:CDS 35.0%
!! GTAATAGCTGTCACTTTACA+TGG - chr2_3:49508625-49508644 None:intergenic 35.0%
TTACATTACATGGATAGGAG+AGG - chr2_3:49508873-49508892 None:intergenic 35.0%
TATTGGATTCATTCAACGAG+TGG + chr2_3:49509046-49509065 Msa0296340:intron 35.0%
CATTTCTTCGATATTGAGCA+TGG - chr2_3:49509110-49509129 None:intergenic 35.0%
GATTAATCCTCCAGCAAATT+TGG - chr2_3:49509225-49509244 None:intergenic 35.0%
AAATATTAACCCTATGGCGT+GGG + chr2_3:49509284-49509303 Msa0296340:intron 35.0%
!! TAGTTGAGTCTTGTTAGAGT+TGG + chr2_3:49509354-49509373 Msa0296340:intron 35.0%
GATGTACTATCTTTAAGCCA+AGG + chr2_3:49509579-49509598 Msa0296340:intron 35.0%
TACAGATGGGAAATATGTCA+TGG - chr2_3:49509630-49509649 None:intergenic 35.0%
TTTGGTTAAGGGTTACAGAT+GGG - chr2_3:49509643-49509662 None:intergenic 35.0%
!! TTTTGGTTAAGGGTTACAGA+TGG - chr2_3:49509644-49509663 None:intergenic 35.0%
!!! GCTAGAACTGTTTTGGTTAA+GGG - chr2_3:49509654-49509673 None:intergenic 35.0%
! TTGTATGGCTAGAACTGTTT+TGG - chr2_3:49509661-49509680 None:intergenic 35.0%
TTCATGGCGTAGTATTTGTA+TGG - chr2_3:49509676-49509695 None:intergenic 35.0%
ATACTACGCCATGAAAAACT+CGG + chr2_3:49509681-49509700 Msa0296340:intron 35.0%
GTCCGATCTTGATAAACATT+TGG + chr2_3:49509731-49509750 Msa0296340:intron 35.0%
!!! TCCACTTTGTTTTACTAGCA+AGG + chr2_3:49509799-49509818 Msa0296340:intron 35.0%
GATAAAAGTCAAGGTGGTTT+GGG - chr2_3:49509861-49509880 None:intergenic 35.0%
TGATAAAAGTCAAGGTGGTT+TGG - chr2_3:49509862-49509881 None:intergenic 35.0%
AGTTTAATTCCGACTGATAG+AGG + chr2_3:49509986-49510005 Msa0296340:intron 35.0%
ATATTGGTACCTCTATCAGT+CGG - chr2_3:49509998-49510017 None:intergenic 35.0%
GTGTGTCGGAAACTAAATAT+TGG - chr2_3:49510014-49510033 None:intergenic 35.0%
TGAAGGAAATCTTATTCGAG+AGG - chr2_3:49510036-49510055 None:intergenic 35.0%
CGAATAAGATTTCCTTCACT+AGG + chr2_3:49510038-49510057 Msa0296340:intron 35.0%
GAGAAGAAAGAAGAAACAGT+TGG - chr2_3:49510129-49510148 None:intergenic 35.0%
CTTCTCCATTAGAAATGTTC+AGG + chr2_3:49510143-49510162 Msa0296340:intron 35.0%
TCACTCCTGAACATTTCTAA+TGG - chr2_3:49510151-49510170 None:intergenic 35.0%
!! TATTCCATGGATTGGTCTAA+TGG + chr2_3:49510338-49510357 Msa0296340:intron 35.0%
! TAATGGATGCGTTCGAAATA+AGG + chr2_3:49510355-49510374 Msa0296340:intron 35.0%
! GATGGATTTGTGAAATTGAG+AGG + chr2_3:49510404-49510423 Msa0296340:intron 35.0%
! GTGAAATTGAGAGGTATGAA+AGG + chr2_3:49510413-49510432 Msa0296340:intron 35.0%
CACTTAGAAAATGCCAATGA+GGG + chr2_3:49510672-49510691 Msa0296340:intron 35.0%
CCAAGCAAGTATAAGTATAC+CGG - chr2_3:49510757-49510776 None:intergenic 35.0%
! TGGTTCAATTTCTTTGAGGA+GGG + chr2_3:49510925-49510944 Msa0296340:intron 35.0%
! AAAATTGGAGAAGGTGGTTT+TGG + chr2_3:49511315-49511334 Msa0296340:intron 35.0%
! GGGAATTCTAGAAAATGTAG+TGG + chr2_3:49511437-49511456 Msa0296340:intron 35.0%
TAGTGGAAATTGCTGTGAAA+TGG + chr2_3:49511454-49511473 Msa0296340:intron 35.0%
! CAAGAAGCTTTACAAGGTTT+TGG - chr2_3:49511551-49511570 None:intergenic 35.0%
CAAAACCTTGTAAAGCTTCT+TGG + chr2_3:49511549-49511568 Msa0296340:intron 35.0%
AACAACCAAGAAGCTTTACA+AGG - chr2_3:49511557-49511576 None:intergenic 35.0%
!!! AGCTTGGACTCCTTTATTTT+TGG + chr2_3:49511598-49511617 Msa0296340:intron 35.0%
!!! GGACTCCTTTATTTTTGGTA+TGG + chr2_3:49511603-49511622 Msa0296340:intron 35.0%
AAGCGTTTCGACATTATATG+TGG + chr2_3:49511791-49511810 Msa0296340:intron 35.0%
! ATGCCGAAATCCGAAATTTT+AGG - chr2_3:49511884-49511903 None:intergenic 35.0%
TAAAATTTCGGATTTCGGCA+TGG + chr2_3:49511883-49511902 Msa0296340:intron 35.0%
TTCGAAGGAGATCAAAACAA+AGG + chr2_3:49511914-49511933 Msa0296340:intron 35.0%
GAAACACAAGGAGAATAGTT+GGG + chr2_3:49511936-49511955 Msa0296340:intron 35.0%
GTTCTCCTTATTAAGGCAAT+AGG + chr2_3:49512013-49512032 Msa0296340:intron 35.0%
GAAACCCTATTGCCTTAATA+AGG - chr2_3:49512021-49512040 None:intergenic 35.0%
AAACTATCGGTAGCATATTC+CGG - chr2_3:49512082-49512101 None:intergenic 35.0%
AACCAAACCCATAATCTCAT+AGG + chr2_3:49512190-49512209 Msa0296340:CDS 35.0%
AGAGAGATCAGAATGTACAA+AGG + chr2_3:49512488-49512507 Msa0296340:CDS 35.0%
AACACAACTTAGATGTGTGT+GGG - chr2_3:49512811-49512830 None:intergenic 35.0%
AAACACAACTTAGATGTGTG+TGG - chr2_3:49512812-49512831 None:intergenic 35.0%
GTACAGCAACAAAAATCCAA+TGG - chr2_3:49512990-49513009 None:intergenic 35.0%
ATAAAAATCAAAGCATGCCC+CGG - chr2_3:49513043-49513062 None:intergenic 35.0%
TATCGCAACACGAAACAAAA+TGG - chr2_3:49513080-49513099 None:intergenic 35.0%
TTTCGTGTTGCGATATTGAA+TGG + chr2_3:49513085-49513104 Msa0296340:intron 35.0%
CGCTATAGCATAGCTAAATT+CGG + chr2_3:49513255-49513274 Msa0296340:intron 35.0%
TATTTCGAGCTTGGAAACAT+TGG + chr2_3:49513300-49513319 Msa0296340:intron 35.0%
!! CCACATTTTGGTATTAAAGG+CGG - chr2_3:49513517-49513536 None:intergenic 35.0%
!! CGACCACATTTTGGTATTAA+AGG - chr2_3:49513520-49513539 None:intergenic 35.0%
! ATCGACTCAAACTAAACCAA+CGG - chr2_3:49513659-49513678 None:intergenic 35.0%
!! AGAGTTTGTTGAGAGGAAGA+GGG + chr2_3:49508340-49508359 Msa0296340:CDS 40.0%
GTTAGACAATTCCATCCGAA+AGG - chr2_3:49508448-49508467 None:intergenic 40.0%
TTTGACTGGAAATCAAGGTC+AGG + chr2_3:49508476-49508495 Msa0296340:CDS 40.0%
TCACTTAAGAGCTTACGAGA+CGG - chr2_3:49508518-49508537 None:intergenic 40.0%
TCGTAAGCTCTTAAGTGAGT+TGG + chr2_3:49508520-49508539 Msa0296340:intron 40.0%
! TGAGTTTTCCTAACCTTCAC+TGG + chr2_3:49509135-49509154 Msa0296340:intron 40.0%
ATTAGACGAGTTTCCAGTGA+AGG - chr2_3:49509151-49509170 None:intergenic 40.0%
TATTGGTCCTCCAAATTTGC+TGG + chr2_3:49509212-49509231 Msa0296340:intron 40.0%
TAATCCTCCAGCAAATTTGG+AGG - chr2_3:49509222-49509241 None:intergenic 40.0%
GAAATATTAACCCTATGGCG+TGG + chr2_3:49509283-49509302 Msa0296340:intron 40.0%
TACTATCTTTAAGCCAAGGC+TGG + chr2_3:49509583-49509602 Msa0296340:intron 40.0%
ATGGTCGAGCGATTAATCTA+TGG - chr2_3:49509611-49509630 None:intergenic 40.0%
!!! GGCTAGAACTGTTTTGGTTA+AGG - chr2_3:49509655-49509674 None:intergenic 40.0%
GACTTTATGGAAGCCAACAT+AGG - chr2_3:49509714-49509733 None:intergenic 40.0%
GCCTTGCTAGTAAAACAAAG+TGG - chr2_3:49509803-49509822 None:intergenic 40.0%
!! ATAAAAGTGCCTAAGCTCCA+AGG + chr2_3:49509835-49509854 Msa0296340:intron 40.0%
AGAACTCGAATGGTTGTCTT+GGG - chr2_3:49509898-49509917 None:intergenic 40.0%
AAGAACTCGAATGGTTGTCT+TGG - chr2_3:49509899-49509918 None:intergenic 40.0%
! ATCTTATTCGAGAGGTGTGT+CGG - chr2_3:49510028-49510047 None:intergenic 40.0%
AATTAGGTTCTGCCTAGTGA+AGG - chr2_3:49510053-49510072 None:intergenic 40.0%
! ATCAAGCAGTGGTGTGTTTT+GGG - chr2_3:49510210-49510229 None:intergenic 40.0%
! AATCAAGCAGTGGTGTGTTT+TGG - chr2_3:49510211-49510230 None:intergenic 40.0%
CTGTCACATAAATCAAGCAG+TGG - chr2_3:49510221-49510240 None:intergenic 40.0%
TGTGACAGTTATGCACTTTG+TGG + chr2_3:49510233-49510252 Msa0296340:intron 40.0%
CCTTTCATACATTGACACAC+AGG - chr2_3:49510290-49510309 None:intergenic 40.0%
CCTGTGTGTCAATGTATGAA+AGG + chr2_3:49510287-49510306 Msa0296340:intron 40.0%
AGTTGGCTGGATGAAACAAT+TGG + chr2_3:49510452-49510471 Msa0296340:intron 40.0%
GCTGGATGAAACAATTGGTT+CGG + chr2_3:49510457-49510476 Msa0296340:intron 40.0%
! GGAATGTAGAGTGAAGTGTT+TGG + chr2_3:49510481-49510500 Msa0296340:intron 40.0%
GATATTAGACAGTTTGCAGC+TGG + chr2_3:49510510-49510529 Msa0296340:intron 40.0%
AGAATGGATGCCTCAGAATT+AGG + chr2_3:49510552-49510571 Msa0296340:intron 40.0%
TAAGCTCACACCTAATTCTG+AGG - chr2_3:49510565-49510584 None:intergenic 40.0%
GCACTTAGAAAATGCCAATG+AGG + chr2_3:49510671-49510690 Msa0296340:intron 40.0%
! TTTCTTTTTGTGGCCCTCAT+TGG - chr2_3:49510688-49510707 None:intergenic 40.0%
AGTAACAGTTTCTCTTGCCA+CGG + chr2_3:49510722-49510741 Msa0296340:intron 40.0%
CCGGTATACTTATACTTGCT+TGG + chr2_3:49510754-49510773 Msa0296340:intron 40.0%
! GTGGTTCAATTTCTTTGAGG+AGG + chr2_3:49510924-49510943 Msa0296340:intron 40.0%
ATTGAAGGTAACTGCGATGT+CGG - chr2_3:49511113-49511132 None:intergenic 40.0%
!! CAGCGACACTTTTTGATTGA+AGG - chr2_3:49511128-49511147 None:intergenic 40.0%
!!! TGGTTTTGGACCTGTATACA+AGG + chr2_3:49511329-49511348 Msa0296340:intron 40.0%
AAATGGCTTTCAACAAGCTC+AGG + chr2_3:49511471-49511490 Msa0296340:intron 40.0%
AATGGCTTTCAACAAGCTCA+GGG + chr2_3:49511472-49511491 Msa0296340:intron 40.0%
TTCATCAGGATTCCAGACAA+AGG + chr2_3:49511837-49511856 Msa0296340:intron 40.0%
TCGGTGAATAATCCTTTGTC+TGG - chr2_3:49511852-49511871 None:intergenic 40.0%
GGAAACACAAGGAGAATAGT+TGG + chr2_3:49511935-49511954 Msa0296340:intron 40.0%
AAAATGTGATGTGTGTGCAG+TGG + chr2_3:49512046-49512065 Msa0296340:intron 40.0%
AAATCCGATGTCTTCAGCTT+AGG + chr2_3:49512112-49512131 Msa0296340:CDS 40.0%
AACACCTAAGCTGAAGACAT+CGG - chr2_3:49512119-49512138 None:intergenic 40.0%
!! CAGCTTAGGTGTTTTGTTGA+TGG + chr2_3:49512126-49512145 Msa0296340:CDS 40.0%
! ATATCAGGGAAGAGAAGCAT+AGG + chr2_3:49512154-49512173 Msa0296340:CDS 40.0%
AGCCTATGAGATTATGGGTT+TGG - chr2_3:49512195-49512214 None:intergenic 40.0%
TAACCTAAGTGATCGATGCA+GGG - chr2_3:49512538-49512557 None:intergenic 40.0%
ATAACCTAAGTGATCGATGC+AGG - chr2_3:49512539-49512558 None:intergenic 40.0%
ACACAACTTAGATGTGTGTG+GGG - chr2_3:49512810-49512829 None:intergenic 40.0%
TCTGAATAACACACCTCGAT+TGG + chr2_3:49512868-49512887 Msa0296340:intron 40.0%
TTGTACGAAGTTGCGTATTG+TGG - chr2_3:49513208-49513227 None:intergenic 40.0%
TTTAGACGGAAAGGATGAGT+AGG - chr2_3:49513470-49513489 None:intergenic 40.0%
! GGTTTGAAGTTTAGACGGAA+AGG - chr2_3:49513479-49513498 None:intergenic 40.0%
CCGCCTTTAATACCAAAATG+TGG + chr2_3:49513514-49513533 Msa0296340:intron 40.0%
! AGTGTCAAGTCTTTTCCACA+CGG - chr2_3:49513545-49513564 None:intergenic 40.0%
TCGACTCAAACTAAACCAAC+GGG - chr2_3:49513658-49513677 None:intergenic 40.0%
!! TGGTTTAGTTTGAGTCGATC+TGG + chr2_3:49513660-49513679 Msa0296340:intron 40.0%
AGAGATCTTCACAAGCATGA+CGG - chr2_3:49513804-49513823 None:intergenic 40.0%
TTGTCATCTGCAGTTCCATC+TGG + chr2_3:49508291-49508310 Msa0296340:CDS 45.0%
GTGTCAAATGATGCTCCAGA+TGG - chr2_3:49508309-49508328 None:intergenic 45.0%
!! CAGAGTTTGTTGAGAGGAAG+AGG + chr2_3:49508339-49508358 Msa0296340:CDS 45.0%
! GTTTGCTGATCAACAGCTGA+TGG + chr2_3:49508368-49508387 Msa0296340:CDS 45.0%
CAGATGACAGATCGACCTTT+CGG + chr2_3:49508430-49508449 Msa0296340:CDS 45.0%
CACTTAAGAGCTTACGAGAC+GGG - chr2_3:49508517-49508536 None:intergenic 45.0%
TAGTAAGCAGCAGTCCATCA+TGG + chr2_3:49508917-49508936 Msa0296340:intron 45.0%
ACGAGTTTCCAGTGAAGGTT+AGG - chr2_3:49509146-49509165 None:intergenic 45.0%
TTAATCTATGGCACCAGCCT+TGG - chr2_3:49509599-49509618 None:intergenic 45.0%
ATACACAATACCGTGCCATC+AGG + chr2_3:49509762-49509781 Msa0296340:intron 45.0%
TTTGACTCAACCTGATGGCA+CGG - chr2_3:49509775-49509794 None:intergenic 45.0%
! GTGACTCTGAAGAACTCGAA+TGG - chr2_3:49509908-49509927 None:intergenic 45.0%
AGTTCTTCAGAGTCACCAGA+TGG + chr2_3:49509912-49509931 Msa0296340:intron 45.0%
! TCAAGCAGTGGTGTGTTTTG+GGG - chr2_3:49510209-49510228 None:intergenic 45.0%
AAGCGTGGTATTCCATGGAT+TGG + chr2_3:49510330-49510349 Msa0296340:intron 45.0%
GCATCCATTAGACCAATCCA+TGG - chr2_3:49510345-49510364 None:intergenic 45.0%
!! AAATAAGGCATTGCGTTGCG+AGG + chr2_3:49510370-49510389 Msa0296340:intron 45.0%
TGCGAGGAAAAAAGCAAGGA+TGG + chr2_3:49510386-49510405 Msa0296340:intron 45.0%
AGCCAACTATCTGTGGTTTC+AGG - chr2_3:49510440-49510459 None:intergenic 45.0%
TGAAACCACAGATAGTTGGC+TGG + chr2_3:49510439-49510458 Msa0296340:intron 45.0%
TTCATCCAGCCAACTATCTG+TGG - chr2_3:49510447-49510466 None:intergenic 45.0%
!! GGATGAAACAATTGGTTCGG+AGG + chr2_3:49510460-49510479 Msa0296340:intron 45.0%
ATTAGACAGTTTGCAGCTGG+AGG + chr2_3:49510513-49510532 Msa0296340:intron 45.0%
TTAGACAGTTTGCAGCTGGA+GGG + chr2_3:49510514-49510533 Msa0296340:intron 45.0%
TCAAAACAGTGGGATGCAAG+TGG + chr2_3:49511221-49511240 Msa0296340:intron 45.0%
CTTTCAACAAGCTCAGGGTA+AGG + chr2_3:49511477-49511496 Msa0296340:intron 45.0%
GGGACTTGTGTATCTTCATC+AGG + chr2_3:49511823-49511842 Msa0296340:intron 45.0%
! GGCATGGCTAGAATTTTCGA+AGG + chr2_3:49511899-49511918 Msa0296340:intron 45.0%
ATGTGTGTGCAGTGGTTACA+TGG + chr2_3:49512054-49512073 Msa0296340:intron 45.0%
GCTGGGAAAGCTTTCATTCT+CGG + chr2_3:49512448-49512467 Msa0296340:CDS 45.0%
CTGGGAAAGCTTTCATTCTC+GGG + chr2_3:49512449-49512468 Msa0296340:CDS 45.0%
TGGGAAAGCTTTCATTCTCG+GGG + chr2_3:49512450-49512469 Msa0296340:CDS 45.0%
TTCGAGCTTGGAAACATTGG+AGG + chr2_3:49513303-49513322 Msa0296340:intron 45.0%
TCGAGCTTGGAAACATTGGA+GGG + chr2_3:49513304-49513323 Msa0296340:intron 45.0%
!! AGGCGGCTGTTTTAGATCAT+TGG - chr2_3:49513500-49513519 None:intergenic 45.0%
GGAGCCTATTTGGCATAAGA+TGG - chr2_3:49513636-49513655 None:intergenic 45.0%
CGACTCAAACTAAACCAACG+GGG - chr2_3:49513657-49513676 None:intergenic 45.0%
AGGCGCAAAAAAAGTCCACA+CGG - chr2_3:49513705-49513724 None:intergenic 45.0%
!!! CTTTTATTAATAAATTTTAT+TGG - chr2_3:49513338-49513357 None:intergenic 5.0%
TCAAGAGAAGACTGCCAGAC+TGG + chr2_3:49508392-49508411 Msa0296340:CDS 50.0%
AGCATAAGCAGCAACCAGTC+TGG - chr2_3:49508409-49508428 None:intergenic 50.0%
TGACAGATCGACCTTTCGGA+TGG + chr2_3:49508434-49508453 Msa0296340:CDS 50.0%
AGTCACAGCTGCTTCTGTGA+TGG + chr2_3:49508845-49508864 Msa0296340:intron 50.0%
GACACAGTTGCGCGGATATA+AGG + chr2_3:49508939-49508958 Msa0296340:intron 50.0%
!! TGGTCCTCCAAATTTGCTGG+AGG + chr2_3:49509215-49509234 Msa0296340:intron 50.0%
! AATGATTGGCCCACGCCATA+GGG - chr2_3:49509296-49509315 None:intergenic 50.0%
ATCCATGTCCCATTCGAGTG+CGG - chr2_3:49509562-49509581 None:intergenic 50.0%
GCCATGAAAAACTCGGACAG+TGG + chr2_3:49509688-49509707 Msa0296340:intron 50.0%
! GCCACTGTCCGAGTTTTTCA+TGG - chr2_3:49509692-49509711 None:intergenic 50.0%
AACCTAAGTCACCTCAAGCG+TGG + chr2_3:49510315-49510334 Msa0296340:intron 50.0%
TACCACGCTTGAGGTGACTT+AGG - chr2_3:49510320-49510339 None:intergenic 50.0%
ACCTCAAGCGTGGTATTCCA+TGG + chr2_3:49510325-49510344 Msa0296340:intron 50.0%
TCCATGGAATACCACGCTTG+AGG - chr2_3:49510329-49510348 None:intergenic 50.0%
GCGTTGCGAGGAAAAAAGCA+AGG + chr2_3:49510382-49510401 Msa0296340:intron 50.0%
GGCCTGAAACCACAGATAGT+TGG + chr2_3:49510435-49510454 Msa0296340:intron 50.0%
GAGACAACCCTTGTGCCTTA+CGG + chr2_3:49512369-49512388 Msa0296340:intron 50.0%
ATGGAGACCGTAAGGCACAA+GGG - chr2_3:49512379-49512398 None:intergenic 50.0%
AAAGCTTTCATTCTCGGGGC+TGG + chr2_3:49512454-49512473 Msa0296340:CDS 50.0%
GGAACACTGAGCTTCTGATG+AGG + chr2_3:49512509-49512528 Msa0296340:CDS 50.0%
! CAACCCTGCATCGATCACTT+AGG + chr2_3:49512532-49512551 Msa0296340:CDS 50.0%
! AGTGAGCTCTAGTGTGTGTC+CGG + chr2_3:49513021-49513040 Msa0296340:intron 50.0%
TGGCGCTAGCTATAGTGTAG+CGG + chr2_3:49513151-49513170 Msa0296340:intron 50.0%
GCTTGGAAACATTGGAGGGA+AGG + chr2_3:49513308-49513327 Msa0296340:intron 50.0%
! CACACGGATCGACCACATTT+TGG - chr2_3:49513529-49513548 None:intergenic 50.0%
CAAAATGTGGTCGATCCGTG+TGG + chr2_3:49513527-49513546 Msa0296340:intron 50.0%
AAACCAACGGGGAGCCTATT+TGG - chr2_3:49513646-49513665 None:intergenic 50.0%
CATGTTGACATCAGTCCGTG+TGG + chr2_3:49513687-49513706 Msa0296340:intron 50.0%
CCATCATGGACACAGTTGCG+CGG + chr2_3:49508931-49508950 Msa0296340:intron 55.0%
! CAATGATTGGCCCACGCCAT+AGG - chr2_3:49509297-49509316 None:intergenic 55.0%
GTGCGTGTTAAAGCAGCAGC+AGG + chr2_3:49509534-49509553 Msa0296340:intron 55.0%
AGCAGGAACCGCACTCGAAT+GGG + chr2_3:49509551-49509570 Msa0296340:intron 55.0%
AACCGCACTCGAATGGGACA+TGG + chr2_3:49509557-49509576 Msa0296340:intron 55.0%
ACTCGGACAGTGGCCTATGT+TGG + chr2_3:49509698-49509717 Msa0296340:intron 55.0%
! TGGTTTGGGCCTTGGAGCTT+AGG - chr2_3:49509847-49509866 None:intergenic 55.0%
! AGTCAAGGTGGTTTGGGCCT+TGG - chr2_3:49509855-49509874 None:intergenic 55.0%
!!! GCAGTGGTGTGTTTTGGGGA+TGG - chr2_3:49510205-49510224 None:intergenic 55.0%
AGTTTCTCTTGCCACGGCAG+TGG + chr2_3:49510728-49510747 Msa0296340:intron 55.0%
TATACCGGAAACCACTGCCG+TGG - chr2_3:49510742-49510761 None:intergenic 55.0%
!! TGAAGCACCGACACTGACAC+CGG + chr2_3:49511025-49511044 Msa0296340:intron 55.0%
! ACTGTGTCCGGTGTCAGTGT+CGG - chr2_3:49511035-49511054 None:intergenic 55.0%
GGTAACTGCGATGTCGGACA+TGG - chr2_3:49511107-49511126 None:intergenic 55.0%
AGTGGGATGCAAGTGGACGA+CGG + chr2_3:49511228-49511247 Msa0296340:intron 55.0%
GTGCAGTGGTTACATGGCAC+CGG + chr2_3:49512060-49512079 Msa0296340:intron 55.0%
GATGGAGACCGTAAGGCACA+AGG - chr2_3:49512380-49512399 None:intergenic 55.0%
CACACGAAGCTGAAGCCTGA+AGG - chr2_3:49512412-49512431 None:intergenic 55.0%
CTTCAGGCTTCAGCTTCGTG+TGG + chr2_3:49512410-49512429 Msa0296340:intron 55.0%
TTCCCAGCCAGAACCTAAGG+AGG - chr2_3:49512436-49512455 None:intergenic 55.0%
GCTTTCCCAGCCAGAACCTA+AGG - chr2_3:49512439-49512458 None:intergenic 55.0%
TCAGACACGGCAGAAGTGAC+AGG + chr2_3:49512903-49512922 Msa0296340:intron 55.0%
CAGACACGGCAGAAGTGACA+GGG + chr2_3:49512904-49512923 Msa0296340:intron 55.0%
! GTGAGCTCTAGTGTGTGTCC+GGG + chr2_3:49513022-49513041 Msa0296340:intron 55.0%
! TGAGCTCTAGTGTGTGTCCG+GGG + chr2_3:49513023-49513042 Msa0296340:intron 55.0%
ATGCCAAATAGGCTCCCCGT+TGG + chr2_3:49513640-49513659 Msa0296340:intron 55.0%
CCGCGCAACTGTGTCCATGA+TGG - chr2_3:49508934-49508953 None:intergenic 60.0%
CAGCAGGAACCGCACTCGAA+TGG + chr2_3:49509550-49509569 Msa0296340:intron 60.0%
CTTGCCACGGCAGTGGTTTC+CGG + chr2_3:49510735-49510754 Msa0296340:intron 60.0%
! AGCTGAAGCCTGAAGGCACG+CGG - chr2_3:49512405-49512424 None:intergenic 60.0%
CAGCTTCGTGTGGCCTCCTT+AGG + chr2_3:49512420-49512439 Msa0296340:intron 60.0%
CGTGTGGCCTCCTTAGGTTC+TGG + chr2_3:49512426-49512445 Msa0296340:intron 60.0%
! TGGCCTCCTTAGGTTCTGGC+TGG + chr2_3:49512430-49512449 Msa0296340:intron 60.0%
! GGCCTCCTTAGGTTCTGGCT+GGG + chr2_3:49512431-49512450 Msa0296340:intron 60.0%
GCTTTCATTCTCGGGGCTGG+TGG + chr2_3:49512457-49512476 Msa0296340:CDS 60.0%
! TTCATTCTCGGGGCTGGTGG+TGG + chr2_3:49512460-49512479 Msa0296340:CDS 60.0%
CGCGGGAGATGGAGACCGTA+AGG - chr2_3:49512387-49512406 None:intergenic 65.0%
TCCATCTCCCGCGTGCCTTC+AGG + chr2_3:49512394-49512413 Msa0296340:intron 65.0%
! GCTGAAGCCTGAAGGCACGC+GGG - chr2_3:49512404-49512423 None:intergenic 65.0%
! GCCTGAAGGCACGCGGGAGA+TGG - chr2_3:49512398-49512417 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 49508249 49513841 49508249 ID=Msa0296340;Name=Msa0296340
chr2_3 mRNA 49508249 49513841 49508249 ID=Msa0296340-mRNA-1;Parent=Msa0296340;Name=Msa0296340-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.4|1|1|5|0|195
chr2_3 exon 49508249 49508497 49508249 ID=Msa0296340-mRNA-1:exon:15570;Parent=Msa0296340-mRNA-1
chr2_3 exon 49508754 49508761 49508754 ID=Msa0296340-mRNA-1:exon:15571;Parent=Msa0296340-mRNA-1
chr2_3 exon 49512066 49512216 49512066 ID=Msa0296340-mRNA-1:exon:15572;Parent=Msa0296340-mRNA-1
chr2_3 exon 49512442 49512558 49512442 ID=Msa0296340-mRNA-1:exon:15573;Parent=Msa0296340-mRNA-1
chr2_3 exon 49513779 49513841 49513779 ID=Msa0296340-mRNA-1:exon:15574;Parent=Msa0296340-mRNA-1
chr2_3 CDS 49508249 49508497 49508249 ID=Msa0296340-mRNA-1:cds;Parent=Msa0296340-mRNA-1
chr2_3 CDS 49508754 49508761 49508754 ID=Msa0296340-mRNA-1:cds;Parent=Msa0296340-mRNA-1
chr2_3 CDS 49512066 49512216 49512066 ID=Msa0296340-mRNA-1:cds;Parent=Msa0296340-mRNA-1
chr2_3 CDS 49512442 49512558 49512442 ID=Msa0296340-mRNA-1:cds;Parent=Msa0296340-mRNA-1
chr2_3 CDS 49513779 49513841 49513779 ID=Msa0296340-mRNA-1:cds;Parent=Msa0296340-mRNA-1
Gene Sequence

>Msa0296340

ATGAATGTTCATCACTCTAGTAACAAAGGGATGATGCAAGCATTGTCATCTGCAGTTCCATCTGGAGCATCATTTGACACTCACTACTATCAGAGTTTGTTGAGAGGAAGAGGGTTATTGTTTGCTGATCAACAGCTGATGGCTCAAGAGAAGACTGCCAGACTGGTTGCTGCTTATGCTTCAGATGACAGATCGACCTTTCGGATGGAATTGTCTAACCTTGATGTTTTGACTGGAAATCAAGGTCAGATTCCAATTGGTTACATGGCACCGGAATATGCTACCGATAGTTTATTTTCAGTAAAATCCGATGTCTTCAGCTTAGGTGTTTTGTTGATGGAGATTATATCAGGGAAGAGAAGCATAGGATACTATAGTCAAAACCAAACCCATAATCTCATAGGCTATGTTCTGGCTGGGAAAGCTTTCATTCTCGGGGCTGGTGGTGGTGCTGAGAGAGATCAGAATGTACAAAGGAACACTGAGCTTCTGATGAGGCAACCCTGCATCGATCACTTAGGTTATGTGAACACTAGTCAGCATTCAACCGTCATGCTTGTGAAGATCTCTGCTGCACTTTACAGTTAA
Protein sequence

>Msa0296340

MNVHHSSNKGMMQALSSAVPSGASFDTHYYQSLLRGRGLLFADQQLMAQEKTARLVAAYASDDRSTFRMELSNLDVLTGNQGQIPIGYMAPEYATDSLFSVKSDVFSLGVLLMEIISGKRSIGYYSQNQTHNLIGYVLAGKAFILGAGGGAERDQNVQRNTELLMRQPCIDHLGYVNTSQHSTVMLVKISAALYS*