Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297210 | RHN75377.1 | 70.103 | 194 | 56 | 1 | 6 | 199 | 2 | 193 | 6.97e-94 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297210 | sp|Q1G3Q4|RITF1_ARATH | 37.681 | 138 | 75 | 5 | 12 | 149 | 8 | 134 | 1.99e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297210 | A0A396JJY5 | 70.103 | 194 | 56 | 1 | 6 | 199 | 2 | 193 | 3.33e-94 | 284 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0297210 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297210 | MtrunA17_Chr2g0320521 | 70.103 | 194 | 56 | 1 | 6 | 199 | 2 | 193 | 6.41e-98 | 284 |
| Msa0297210 | MtrunA17_Chr2g0320561 | 62.617 | 214 | 80 | 0 | 7 | 220 | 1 | 214 | 4.84e-89 | 262 |
| Msa0297210 | MtrunA17_Chr4g0020811 | 74.172 | 151 | 39 | 0 | 6 | 156 | 2 | 152 | 6.76e-81 | 238 |
| Msa0297210 | MtrunA17_Chr2g0308401 | 73.333 | 150 | 40 | 0 | 7 | 156 | 1 | 150 | 2.19e-79 | 234 |
| Msa0297210 | MtrunA17_Chr2g0320551 | 63.158 | 152 | 56 | 0 | 7 | 158 | 1 | 152 | 1.08e-67 | 205 |
| Msa0297210 | MtrunA17_Chr1g0179781 | 48.538 | 171 | 74 | 7 | 6 | 171 | 2 | 163 | 2.57e-45 | 149 |
| Msa0297210 | MtrunA17_Chr7g0265291 | 51.678 | 149 | 61 | 4 | 7 | 153 | 4 | 143 | 7.95e-44 | 145 |
| Msa0297210 | MtrunA17_Chr5g0411151 | 48.299 | 147 | 66 | 4 | 6 | 152 | 31 | 167 | 3.18e-41 | 140 |
| Msa0297210 | MtrunA17_Chr4g0040071 | 49.265 | 136 | 59 | 3 | 11 | 146 | 16 | 141 | 3.85e-40 | 137 |
| Msa0297210 | MtrunA17_Chr5g0395181 | 47.794 | 136 | 61 | 3 | 11 | 146 | 22 | 147 | 1.44e-39 | 135 |
| Msa0297210 | MtrunA17_Chr8g0366581 | 46.479 | 142 | 66 | 3 | 11 | 152 | 34 | 165 | 1.49e-37 | 130 |
| Msa0297210 | MtrunA17_Chr7g0230511 | 40.136 | 147 | 75 | 6 | 9 | 154 | 7 | 141 | 1.45e-25 | 100 |
| Msa0297210 | MtrunA17_Chr2g0297251 | 38.028 | 142 | 77 | 5 | 12 | 153 | 39 | 169 | 1.37e-22 | 92.4 |
| Msa0297210 | MtrunA17_Chr4g0065041 | 35.754 | 179 | 91 | 7 | 12 | 185 | 10 | 169 | 8.41e-22 | 90.1 |
| Msa0297210 | MtrunA17_Chr8g0392151 | 26.630 | 184 | 116 | 6 | 12 | 182 | 15 | 192 | 1.27e-14 | 70.5 |
| Msa0297210 | MtrunA17_Chr4g0052451 | 37.209 | 86 | 52 | 1 | 63 | 148 | 10 | 93 | 2.51e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297210 | AT1G43000.1 | 47.973 | 148 | 66 | 5 | 6 | 153 | 5 | 141 | 1.26e-41 | 141 |
| Msa0297210 | AT1G43000.2 | 47.973 | 148 | 66 | 5 | 6 | 153 | 12 | 148 | 1.29e-41 | 141 |
| Msa0297210 | AT4G17900.1 | 50.000 | 138 | 58 | 4 | 11 | 147 | 35 | 162 | 4.15e-40 | 137 |
| Msa0297210 | AT4G17900.2 | 50.000 | 138 | 58 | 4 | 11 | 147 | 21 | 148 | 1.42e-39 | 135 |
| Msa0297210 | AT1G32700.1 | 48.571 | 140 | 62 | 3 | 12 | 151 | 14 | 143 | 3.56e-38 | 132 |
| Msa0297210 | AT1G21000.2 | 46.259 | 147 | 69 | 5 | 6 | 152 | 9 | 145 | 7.40e-37 | 129 |
| Msa0297210 | AT1G21000.1 | 46.259 | 147 | 69 | 5 | 6 | 152 | 12 | 148 | 7.90e-37 | 129 |
| Msa0297210 | AT2G27930.3 | 46.053 | 152 | 72 | 4 | 12 | 160 | 6 | 150 | 5.72e-36 | 125 |
| Msa0297210 | AT2G27930.2 | 46.053 | 152 | 72 | 4 | 12 | 160 | 6 | 150 | 5.72e-36 | 125 |
| Msa0297210 | AT2G27930.1 | 48.175 | 137 | 65 | 3 | 12 | 145 | 6 | 139 | 1.36e-35 | 124 |
| Msa0297210 | AT2G27930.4 | 48.175 | 137 | 65 | 3 | 12 | 145 | 6 | 139 | 1.36e-35 | 124 |
| Msa0297210 | AT1G76590.1 | 44.366 | 142 | 69 | 5 | 11 | 152 | 19 | 150 | 2.01e-33 | 120 |
| Msa0297210 | AT1G32700.2 | 50.000 | 112 | 47 | 2 | 40 | 151 | 2 | 104 | 2.55e-29 | 108 |
| Msa0297210 | AT5G46710.1 | 39.416 | 137 | 72 | 4 | 12 | 147 | 30 | 156 | 7.61e-26 | 100 |
| Msa0297210 | AT5G46710.3 | 39.416 | 137 | 72 | 4 | 12 | 147 | 14 | 140 | 9.28e-26 | 100 |
| Msa0297210 | AT5G46710.2 | 39.259 | 135 | 71 | 4 | 12 | 145 | 30 | 154 | 2.11e-25 | 97.8 |
| Msa0297210 | AT1G31040.1 | 38.732 | 142 | 75 | 5 | 12 | 153 | 21 | 150 | 4.57e-24 | 96.3 |
| Msa0297210 | AT2G12646.1 | 37.681 | 138 | 75 | 5 | 12 | 149 | 8 | 134 | 2.02e-20 | 87.0 |
| Msa0297210 | AT2G12646.2 | 37.681 | 138 | 75 | 5 | 12 | 149 | 8 | 134 | 2.02e-20 | 87.0 |
| Msa0297210 | AT2G12646.3 | 37.324 | 142 | 78 | 5 | 8 | 149 | 1 | 131 | 2.20e-20 | 86.7 |
| Msa0297210 | AT3G60670.1 | 37.681 | 138 | 75 | 4 | 12 | 149 | 9 | 135 | 1.92e-19 | 84.0 |
| Msa0297210 | AT2G27930.5 | 50.000 | 84 | 37 | 2 | 65 | 145 | 61 | 142 | 4.01e-17 | 76.6 |
| Msa0297210 | AT2G27930.6 | 50.000 | 84 | 37 | 2 | 65 | 145 | 61 | 142 | 4.01e-17 | 76.6 |
| Msa0297210 | AT2G01818.1 | 34.146 | 164 | 96 | 7 | 12 | 171 | 13 | 168 | 2.67e-15 | 72.4 |
Find 34 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCAATCTTCATTCTCTT+AGG | 0.283981 | 2_3:-50865233 | None:intergenic |
| GGAAGAAATGCAAAGATTAC+TGG | 0.334238 | 2_3:+50866097 | Msa0297210:CDS |
| ACTCATTCTTCGCTTCGTTT+TGG | 0.339624 | 2_3:-50864820 | None:intergenic |
| AAGTGGAATCTACGAGATTT+CGG | 0.396457 | 2_3:-50865295 | None:intergenic |
| TATTGTTTCTTAGGATATGA+TGG | 0.415503 | 2_3:+50864736 | Msa0297210:intron |
| ATGGATTGCCATTGCAATCA+AGG | 0.427353 | 2_3:-50864856 | None:intergenic |
| TACAAGCATCTTGACATCCT+TGG | 0.432167 | 2_3:+50865146 | Msa0297210:CDS |
| CAATCTTCATTCTCTTAGGT+TGG | 0.437011 | 2_3:-50865229 | None:intergenic |
| AGAAAATGAAGAGAATGTAG+AGG | 0.440802 | 2_3:+50866214 | Msa0297210:CDS |
| TGTCAGCAACTTCTCGAGCC+AGG | 0.456881 | 2_3:-50864765 | None:intergenic |
| TGAAGAGAATGTAGAGGGCG+AGG | 0.470102 | 2_3:+50866220 | Msa0297210:CDS |
| GAGGGCGAGGAGGATGAAGA+AGG | 0.474431 | 2_3:+50866233 | Msa0297210:CDS |
| AGGATATGATGGTGGTGCCC+TGG | 0.480086 | 2_3:+50864747 | Msa0297210:intron |
| GGTATTAGCACCAAAAGAAA+AGG | 0.483460 | 2_3:+50866133 | Msa0297210:CDS |
| GGCGAGGAGGATGAAGAAGG+AGG | 0.497906 | 2_3:+50866236 | Msa0297210:CDS |
| TTTGCATATATAAAAGAGAA+TGG | 0.499337 | 2_3:+50866047 | Msa0297210:CDS |
| TTGTGATGAGTTTCCGTGCA+AGG | 0.499988 | 2_3:-50864887 | None:intergenic |
| GAAAATGAAGAGAATGTAGA+GGG | 0.506663 | 2_3:+50866215 | Msa0297210:CDS |
| CAACCTAAGAGAATGAAGAT+TGG | 0.511036 | 2_3:+50865230 | Msa0297210:CDS |
| TGCCAAAGAGCAAAAGTAAG+TGG | 0.517393 | 2_3:-50865312 | None:intergenic |
| GAGGAGGATGAAGAAGGAGG+AGG | 0.526197 | 2_3:+50866239 | Msa0297210:CDS |
| TCCATTGTGTGGACCTTGCA+CGG | 0.527943 | 2_3:+50864874 | Msa0297210:CDS |
| CAACACTGACTTGGATCACT+CGG | 0.540238 | 2_3:-50864916 | None:intergenic |
| ATTACTGGAGAAATCGATCA+AGG | 0.560490 | 2_3:+50866112 | Msa0297210:CDS |
| AGAGAATGTAGAGGGCGAGG+AGG | 0.562880 | 2_3:+50866223 | Msa0297210:CDS |
| GTCAGCAACTTCTCGAGCCA+GGG | 0.568625 | 2_3:-50864764 | None:intergenic |
| TTTGACAATGACAATTGGAA+CGG | 0.571111 | 2_3:+50864638 | None:intergenic |
| TCACATAAGTTTGAACTCCA+AGG | 0.580665 | 2_3:-50865163 | None:intergenic |
| TCTGAAACGAAAACTAGAAG+AGG | 0.593103 | 2_3:+50866178 | Msa0297210:CDS |
| GCATATATAAAAGAGAATGG+AGG | 0.604209 | 2_3:+50866050 | Msa0297210:CDS |
| TCCGTGCAAGGTCCACACAA+TGG | 0.632837 | 2_3:-50864875 | None:intergenic |
| TGCAATGGCAATCCATTGTG+TGG | 0.634353 | 2_3:+50864863 | Msa0297210:CDS |
| TGTTTCTTAGGATATGATGG+TGG | 0.652828 | 2_3:+50864739 | Msa0297210:intron |
| CACTGACTTGGATCACTCGG+TGG | 0.654344 | 2_3:-50864913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAATAAAAAAT+TGG | + | chr2_3:50865609-50865628 | Msa0297210:intron | 0.0% |
| !! | AAATAAATAAATAAAAAATT+GGG | + | chr2_3:50865610-50865629 | Msa0297210:intron | 0.0% |
| !! | AAAATAAATAAATAAAAAAT+TGG | + | chr2_3:50865609-50865628 | Msa0297210:intron | 0.0% |
| !! | AAATAAATAAATAAAAAATT+GGG | + | chr2_3:50865610-50865629 | Msa0297210:intron | 0.0% |
| !! | AAAAATAAAATGAATAGAAA+CGG | - | chr2_3:50865002-50865021 | None:intergenic | 10.0% |
| !!! | TTTGATTATTTTTTTGAATT+TGG | + | chr2_3:50865038-50865057 | Msa0297210:intron | 10.0% |
| !! | AAAAATAAAATGAATAGAAA+CGG | - | chr2_3:50865002-50865021 | None:intergenic | 10.0% |
| !!! | TTTGATTATTTTTTTGAATT+TGG | + | chr2_3:50865038-50865057 | Msa0297210:intron | 10.0% |
| !! | AAAATAAAATGAATAGAAAC+GGG | - | chr2_3:50865001-50865020 | None:intergenic | 15.0% |
| !!! | TGATATTTAAATGAGTATTT+TGG | + | chr2_3:50865582-50865601 | Msa0297210:intron | 15.0% |
| !!! | ACTTTTTTTGTTTTTGTTTA+TGG | - | chr2_3:50865819-50865838 | None:intergenic | 15.0% |
| !!! | TGTTTGTTACAAAATAAAAA+AGG | - | chr2_3:50865852-50865871 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTTGAAAATAA+TGG | + | chr2_3:50865919-50865938 | Msa0297210:intron | 15.0% |
| !! | AAAATAAAATGAATAGAAAC+GGG | - | chr2_3:50865001-50865020 | None:intergenic | 15.0% |
| !!! | TGATATTTAAATGAGTATTT+TGG | + | chr2_3:50865582-50865601 | Msa0297210:intron | 15.0% |
| !!! | ACTTTTTTTGTTTTTGTTTA+TGG | - | chr2_3:50865819-50865838 | None:intergenic | 15.0% |
| !!! | TGTTTGTTACAAAATAAAAA+AGG | - | chr2_3:50865852-50865871 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTTGAAAATAA+TGG | + | chr2_3:50865919-50865938 | Msa0297210:intron | 15.0% |
| !! | CTTGAATTATAAATCAGATA+AGG | + | chr2_3:50865084-50865103 | Msa0297210:intron | 20.0% |
| !!! | ACTTAATTTAAAACAGTGTT+AGG | + | chr2_3:50865518-50865537 | Msa0297210:intron | 20.0% |
| !! | TTTGCATATATAAAAGAGAA+TGG | + | chr2_3:50866047-50866066 | Msa0297210:CDS | 20.0% |
| !! | CTTGAATTATAAATCAGATA+AGG | + | chr2_3:50865084-50865103 | Msa0297210:intron | 20.0% |
| !!! | ACTTAATTTAAAACAGTGTT+AGG | + | chr2_3:50865518-50865537 | Msa0297210:intron | 20.0% |
| !! | TTTGCATATATAAAAGAGAA+TGG | + | chr2_3:50866047-50866066 | Msa0297210:CDS | 20.0% |
| !!! | GTTGAGTTTTATTGTTTCTT+AGG | + | chr2_3:50864727-50864746 | Msa0297210:intron | 25.0% |
| !! | TATTGTTTCTTAGGATATGA+TGG | + | chr2_3:50864736-50864755 | Msa0297210:intron | 25.0% |
| ! | CAAAATCAGTGATATGATAA+AGG | - | chr2_3:50865464-50865483 | None:intergenic | 25.0% |
| ! | CTCTTGAATATGAATAAGTA+CGG | - | chr2_3:50865768-50865787 | None:intergenic | 25.0% |
| !!! | AACTTTTTAGCCTTTTCTTT+TGG | - | chr2_3:50866146-50866165 | None:intergenic | 25.0% |
| !!! | GTTGAGTTTTATTGTTTCTT+AGG | + | chr2_3:50864727-50864746 | Msa0297210:intron | 25.0% |
| !! | TATTGTTTCTTAGGATATGA+TGG | + | chr2_3:50864736-50864755 | Msa0297210:intron | 25.0% |
| ! | CAAAATCAGTGATATGATAA+AGG | - | chr2_3:50865464-50865483 | None:intergenic | 25.0% |
| ! | CTCTTGAATATGAATAAGTA+CGG | - | chr2_3:50865768-50865787 | None:intergenic | 25.0% |
| !!! | AACTTTTTAGCCTTTTCTTT+TGG | - | chr2_3:50866146-50866165 | None:intergenic | 25.0% |
| ! | GACAATCACAACATTTTTCA+TGG | + | chr2_3:50864784-50864803 | Msa0297210:CDS | 30.0% |
| TTACCAATCTTCATTCTCTT+AGG | - | chr2_3:50865236-50865255 | None:intergenic | 30.0% | |
| GAAGTCACTTGATTGAAAAT+TGG | - | chr2_3:50865421-50865440 | None:intergenic | 30.0% | |
| ACATCATTATTCCTACCAAT+TGG | - | chr2_3:50865717-50865736 | None:intergenic | 30.0% | |
| TATGAATAAGTACGGTGTAT+GGG | - | chr2_3:50865760-50865779 | None:intergenic | 30.0% | |
| ATATGAATAAGTACGGTGTA+TGG | - | chr2_3:50865761-50865780 | None:intergenic | 30.0% | |
| GCATATATAAAAGAGAATGG+AGG | + | chr2_3:50866050-50866069 | Msa0297210:CDS | 30.0% | |
| TTTCTTGAACGAAAAAGAGA+TGG | + | chr2_3:50866076-50866095 | Msa0297210:CDS | 30.0% | |
| AGAAAATGAAGAGAATGTAG+AGG | + | chr2_3:50866214-50866233 | Msa0297210:CDS | 30.0% | |
| GAAAATGAAGAGAATGTAGA+GGG | + | chr2_3:50866215-50866234 | Msa0297210:CDS | 30.0% | |
| ! | GACAATCACAACATTTTTCA+TGG | + | chr2_3:50864784-50864803 | Msa0297210:CDS | 30.0% |
| TTACCAATCTTCATTCTCTT+AGG | - | chr2_3:50865236-50865255 | None:intergenic | 30.0% | |
| GAAGTCACTTGATTGAAAAT+TGG | - | chr2_3:50865421-50865440 | None:intergenic | 30.0% | |
| ACATCATTATTCCTACCAAT+TGG | - | chr2_3:50865717-50865736 | None:intergenic | 30.0% | |
| TATGAATAAGTACGGTGTAT+GGG | - | chr2_3:50865760-50865779 | None:intergenic | 30.0% | |
| ATATGAATAAGTACGGTGTA+TGG | - | chr2_3:50865761-50865780 | None:intergenic | 30.0% | |
| GCATATATAAAAGAGAATGG+AGG | + | chr2_3:50866050-50866069 | Msa0297210:CDS | 30.0% | |
| TTTCTTGAACGAAAAAGAGA+TGG | + | chr2_3:50866076-50866095 | Msa0297210:CDS | 30.0% | |
| AGAAAATGAAGAGAATGTAG+AGG | + | chr2_3:50866214-50866233 | Msa0297210:CDS | 30.0% | |
| GAAAATGAAGAGAATGTAGA+GGG | + | chr2_3:50866215-50866234 | Msa0297210:CDS | 30.0% | |
| TGTTTCTTAGGATATGATGG+TGG | + | chr2_3:50864739-50864758 | Msa0297210:intron | 35.0% | |
| ! | AAGTTTTGCCTTGATTGCAA+TGG | + | chr2_3:50864848-50864867 | Msa0297210:CDS | 35.0% |
| TCACATAAGTTTGAACTCCA+AGG | - | chr2_3:50865166-50865185 | None:intergenic | 35.0% | |
| CAATCTTCATTCTCTTAGGT+TGG | - | chr2_3:50865232-50865251 | None:intergenic | 35.0% | |
| CAACCTAAGAGAATGAAGAT+TGG | + | chr2_3:50865230-50865249 | Msa0297210:CDS | 35.0% | |
| AAGTGGAATCTACGAGATTT+CGG | - | chr2_3:50865298-50865317 | None:intergenic | 35.0% | |
| !! | TTCCACTTACTTTTGCTCTT+TGG | + | chr2_3:50865310-50865329 | Msa0297210:CDS | 35.0% |
| AAGGGAAAAAAATGAGATCG+AGG | - | chr2_3:50865356-50865375 | None:intergenic | 35.0% | |
| !!! | TCGATCTCATTTTTTTCCCT+TGG | + | chr2_3:50865355-50865374 | Msa0297210:intron | 35.0% |
| !!! | CGATCTCATTTTTTTCCCTT+GGG | + | chr2_3:50865356-50865375 | Msa0297210:intron | 35.0% |
| !!! | GATCTCATTTTTTTCCCTTG+GGG | + | chr2_3:50865357-50865376 | Msa0297210:intron | 35.0% |
| TGGTAGGAATAATGATGTGT+AGG | + | chr2_3:50865719-50865738 | Msa0297210:intron | 35.0% | |
| GGTAGGAATAATGATGTGTA+GGG | + | chr2_3:50865720-50865739 | Msa0297210:intron | 35.0% | |
| GTAGGAATAATGATGTGTAG+GGG | + | chr2_3:50865721-50865740 | Msa0297210:intron | 35.0% | |
| ATGAATAAGTACGGTGTATG+GGG | - | chr2_3:50865759-50865778 | None:intergenic | 35.0% | |
| GGAAGAAATGCAAAGATTAC+TGG | + | chr2_3:50866097-50866116 | Msa0297210:CDS | 35.0% | |
| ATTACTGGAGAAATCGATCA+AGG | + | chr2_3:50866112-50866131 | Msa0297210:CDS | 35.0% | |
| GGTATTAGCACCAAAAGAAA+AGG | + | chr2_3:50866133-50866152 | Msa0297210:CDS | 35.0% | |
| ! | TCTGAAACGAAAACTAGAAG+AGG | + | chr2_3:50866178-50866197 | Msa0297210:CDS | 35.0% |
| TGTTTCTTAGGATATGATGG+TGG | + | chr2_3:50864739-50864758 | Msa0297210:intron | 35.0% | |
| ! | AAGTTTTGCCTTGATTGCAA+TGG | + | chr2_3:50864848-50864867 | Msa0297210:CDS | 35.0% |
| TCACATAAGTTTGAACTCCA+AGG | - | chr2_3:50865166-50865185 | None:intergenic | 35.0% | |
| CAATCTTCATTCTCTTAGGT+TGG | - | chr2_3:50865232-50865251 | None:intergenic | 35.0% | |
| CAACCTAAGAGAATGAAGAT+TGG | + | chr2_3:50865230-50865249 | Msa0297210:CDS | 35.0% | |
| AAGTGGAATCTACGAGATTT+CGG | - | chr2_3:50865298-50865317 | None:intergenic | 35.0% | |
| !! | TTCCACTTACTTTTGCTCTT+TGG | + | chr2_3:50865310-50865329 | Msa0297210:CDS | 35.0% |
| AAGGGAAAAAAATGAGATCG+AGG | - | chr2_3:50865356-50865375 | None:intergenic | 35.0% | |
| !!! | TCGATCTCATTTTTTTCCCT+TGG | + | chr2_3:50865355-50865374 | Msa0297210:intron | 35.0% |
| !!! | CGATCTCATTTTTTTCCCTT+GGG | + | chr2_3:50865356-50865375 | Msa0297210:intron | 35.0% |
| !!! | GATCTCATTTTTTTCCCTTG+GGG | + | chr2_3:50865357-50865376 | Msa0297210:intron | 35.0% |
| TGGTAGGAATAATGATGTGT+AGG | + | chr2_3:50865719-50865738 | Msa0297210:intron | 35.0% | |
| GGTAGGAATAATGATGTGTA+GGG | + | chr2_3:50865720-50865739 | Msa0297210:intron | 35.0% | |
| GTAGGAATAATGATGTGTAG+GGG | + | chr2_3:50865721-50865740 | Msa0297210:intron | 35.0% | |
| ATGAATAAGTACGGTGTATG+GGG | - | chr2_3:50865759-50865778 | None:intergenic | 35.0% | |
| GGAAGAAATGCAAAGATTAC+TGG | + | chr2_3:50866097-50866116 | Msa0297210:CDS | 35.0% | |
| ATTACTGGAGAAATCGATCA+AGG | + | chr2_3:50866112-50866131 | Msa0297210:CDS | 35.0% | |
| GGTATTAGCACCAAAAGAAA+AGG | + | chr2_3:50866133-50866152 | Msa0297210:CDS | 35.0% | |
| ! | TCTGAAACGAAAACTAGAAG+AGG | + | chr2_3:50866178-50866197 | Msa0297210:CDS | 35.0% |
| ! | ACTCATTCTTCGCTTCGTTT+TGG | - | chr2_3:50864823-50864842 | None:intergenic | 40.0% |
| ! | ATGGATTGCCATTGCAATCA+AGG | - | chr2_3:50864859-50864878 | None:intergenic | 40.0% |
| ! | CAAATTGACCAACACTGACT+TGG | - | chr2_3:50864928-50864947 | None:intergenic | 40.0% |
| TACAAGCATCTTGACATCCT+TGG | + | chr2_3:50865146-50865165 | Msa0297210:CDS | 40.0% | |
| TGCCAAAGAGCAAAAGTAAG+TGG | - | chr2_3:50865315-50865334 | None:intergenic | 40.0% | |
| ! | CTTTTCAACCTTAGTGATCC+GGG | - | chr2_3:50865398-50865417 | None:intergenic | 40.0% |
| ! | GCTTTTCAACCTTAGTGATC+CGG | - | chr2_3:50865399-50865418 | None:intergenic | 40.0% |
| ! | TATTCCTACCAATTGGCTCA+CGG | - | chr2_3:50865710-50865729 | None:intergenic | 40.0% |
| ! | ACTCATTCTTCGCTTCGTTT+TGG | - | chr2_3:50864823-50864842 | None:intergenic | 40.0% |
| ! | ATGGATTGCCATTGCAATCA+AGG | - | chr2_3:50864859-50864878 | None:intergenic | 40.0% |
| ! | CAAATTGACCAACACTGACT+TGG | - | chr2_3:50864928-50864947 | None:intergenic | 40.0% |
| TACAAGCATCTTGACATCCT+TGG | + | chr2_3:50865146-50865165 | Msa0297210:CDS | 40.0% | |
| TGCCAAAGAGCAAAAGTAAG+TGG | - | chr2_3:50865315-50865334 | None:intergenic | 40.0% | |
| ! | CTTTTCAACCTTAGTGATCC+GGG | - | chr2_3:50865398-50865417 | None:intergenic | 40.0% |
| ! | GCTTTTCAACCTTAGTGATC+CGG | - | chr2_3:50865399-50865418 | None:intergenic | 40.0% |
| ! | TATTCCTACCAATTGGCTCA+CGG | - | chr2_3:50865710-50865729 | None:intergenic | 40.0% |
| ! | CATTCTTCGCTTCGTTTTGG+TGG | - | chr2_3:50864820-50864839 | None:intergenic | 45.0% |
| TGCAATGGCAATCCATTGTG+TGG | + | chr2_3:50864863-50864882 | Msa0297210:CDS | 45.0% | |
| TTGTGATGAGTTTCCGTGCA+AGG | - | chr2_3:50864890-50864909 | None:intergenic | 45.0% | |
| !! | CAACACTGACTTGGATCACT+CGG | - | chr2_3:50864919-50864938 | None:intergenic | 45.0% |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2_3:50865319-50865338 | Msa0297210:CDS | 45.0% |
| ! | CATTCTTCGCTTCGTTTTGG+TGG | - | chr2_3:50864820-50864839 | None:intergenic | 45.0% |
| TGCAATGGCAATCCATTGTG+TGG | + | chr2_3:50864863-50864882 | Msa0297210:CDS | 45.0% | |
| TTGTGATGAGTTTCCGTGCA+AGG | - | chr2_3:50864890-50864909 | None:intergenic | 45.0% | |
| !! | CAACACTGACTTGGATCACT+CGG | - | chr2_3:50864919-50864938 | None:intergenic | 45.0% |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2_3:50865319-50865338 | Msa0297210:CDS | 45.0% |
| TCCATTGTGTGGACCTTGCA+CGG | + | chr2_3:50864874-50864893 | Msa0297210:CDS | 50.0% | |
| CGAGTGATCCAAGTCAGTGT+TGG | + | chr2_3:50864917-50864936 | Msa0297210:intron | 50.0% | |
| TCGAGACTATCACACCCCAA+GGG | - | chr2_3:50865374-50865393 | None:intergenic | 50.0% | |
| TTCGAGACTATCACACCCCA+AGG | - | chr2_3:50865375-50865394 | None:intergenic | 50.0% | |
| ATGTGTCTCCGTGAGCCAAT+TGG | + | chr2_3:50865699-50865718 | Msa0297210:intron | 50.0% | |
| TGAAGAGAATGTAGAGGGCG+AGG | + | chr2_3:50866220-50866239 | Msa0297210:CDS | 50.0% | |
| TCCATTGTGTGGACCTTGCA+CGG | + | chr2_3:50864874-50864893 | Msa0297210:CDS | 50.0% | |
| CGAGTGATCCAAGTCAGTGT+TGG | + | chr2_3:50864917-50864936 | Msa0297210:intron | 50.0% | |
| TCGAGACTATCACACCCCAA+GGG | - | chr2_3:50865374-50865393 | None:intergenic | 50.0% | |
| TTCGAGACTATCACACCCCA+AGG | - | chr2_3:50865375-50865394 | None:intergenic | 50.0% | |
| ATGTGTCTCCGTGAGCCAAT+TGG | + | chr2_3:50865699-50865718 | Msa0297210:intron | 50.0% | |
| TGAAGAGAATGTAGAGGGCG+AGG | + | chr2_3:50866220-50866239 | Msa0297210:CDS | 50.0% | |
| !! | AGGATATGATGGTGGTGCCC+TGG | + | chr2_3:50864747-50864766 | Msa0297210:intron | 55.0% |
| GTCAGCAACTTCTCGAGCCA+GGG | - | chr2_3:50864767-50864786 | None:intergenic | 55.0% | |
| TGTCAGCAACTTCTCGAGCC+AGG | - | chr2_3:50864768-50864787 | None:intergenic | 55.0% | |
| TCCGTGCAAGGTCCACACAA+TGG | - | chr2_3:50864878-50864897 | None:intergenic | 55.0% | |
| !! | CACTGACTTGGATCACTCGG+TGG | - | chr2_3:50864916-50864935 | None:intergenic | 55.0% |
| GGGTGTGATAGTCTCGAACC+CGG | + | chr2_3:50865377-50865396 | Msa0297210:intron | 55.0% | |
| GTCTCGAACCCGGATCACTA+AGG | + | chr2_3:50865387-50865406 | Msa0297210:intron | 55.0% | |
| GTCTCCGTGAGCCAATTGGT+AGG | + | chr2_3:50865703-50865722 | Msa0297210:intron | 55.0% | |
| AGAGAATGTAGAGGGCGAGG+AGG | + | chr2_3:50866223-50866242 | Msa0297210:CDS | 55.0% | |
| GAGGAGGATGAAGAAGGAGG+AGG | + | chr2_3:50866239-50866258 | Msa0297210:CDS | 55.0% | |
| !! | AGGATATGATGGTGGTGCCC+TGG | + | chr2_3:50864747-50864766 | Msa0297210:intron | 55.0% |
| GTCAGCAACTTCTCGAGCCA+GGG | - | chr2_3:50864767-50864786 | None:intergenic | 55.0% | |
| TGTCAGCAACTTCTCGAGCC+AGG | - | chr2_3:50864768-50864787 | None:intergenic | 55.0% | |
| TCCGTGCAAGGTCCACACAA+TGG | - | chr2_3:50864878-50864897 | None:intergenic | 55.0% | |
| !! | CACTGACTTGGATCACTCGG+TGG | - | chr2_3:50864916-50864935 | None:intergenic | 55.0% |
| GGGTGTGATAGTCTCGAACC+CGG | + | chr2_3:50865377-50865396 | Msa0297210:intron | 55.0% | |
| GTCTCGAACCCGGATCACTA+AGG | + | chr2_3:50865387-50865406 | Msa0297210:intron | 55.0% | |
| GTCTCCGTGAGCCAATTGGT+AGG | + | chr2_3:50865703-50865722 | Msa0297210:intron | 55.0% | |
| AGAGAATGTAGAGGGCGAGG+AGG | + | chr2_3:50866223-50866242 | Msa0297210:CDS | 55.0% | |
| GAGGAGGATGAAGAAGGAGG+AGG | + | chr2_3:50866239-50866258 | Msa0297210:CDS | 55.0% | |
| GAGGGCGAGGAGGATGAAGA+AGG | + | chr2_3:50866233-50866252 | Msa0297210:CDS | 60.0% | |
| GGCGAGGAGGATGAAGAAGG+AGG | + | chr2_3:50866236-50866255 | Msa0297210:CDS | 60.0% | |
| GAGGGCGAGGAGGATGAAGA+AGG | + | chr2_3:50866233-50866252 | Msa0297210:CDS | 60.0% | |
| GGCGAGGAGGATGAAGAAGG+AGG | + | chr2_3:50866236-50866255 | Msa0297210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50864645 | 50866277 | 50864645 | ID=Msa0297210;Name=Msa0297210 |
| chr2_3 | mRNA | 50864645 | 50866277 | 50864645 | ID=Msa0297210-mRNA-1;Parent=Msa0297210;Name=Msa0297210-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.75|1|1|4|0|221 |
| chr2_3 | exon | 50864645 | 50864659 | 50864645 | ID=Msa0297210-mRNA-1:exon:15994;Parent=Msa0297210-mRNA-1 |
| chr2_3 | exon | 50864749 | 50864928 | 50864749 | ID=Msa0297210-mRNA-1:exon:15995;Parent=Msa0297210-mRNA-1 |
| chr2_3 | exon | 50865101 | 50865340 | 50865101 | ID=Msa0297210-mRNA-1:exon:15996;Parent=Msa0297210-mRNA-1 |
| chr2_3 | exon | 50866047 | 50866277 | 50866047 | ID=Msa0297210-mRNA-1:exon:15997;Parent=Msa0297210-mRNA-1 |
| chr2_3 | CDS | 50864645 | 50864659 | 50864645 | ID=Msa0297210-mRNA-1:cds;Parent=Msa0297210-mRNA-1 |
| chr2_3 | CDS | 50864749 | 50864928 | 50864749 | ID=Msa0297210-mRNA-1:cds;Parent=Msa0297210-mRNA-1 |
| chr2_3 | CDS | 50865101 | 50865340 | 50865101 | ID=Msa0297210-mRNA-1:cds;Parent=Msa0297210-mRNA-1 |
| chr2_3 | CDS | 50866047 | 50866277 | 50866047 | ID=Msa0297210-mRNA-1:cds;Parent=Msa0297210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
