Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297220 | RHN75377.1 | 91.139 | 237 | 15 | 1 | 1 | 237 | 2 | 232 | 1.99e-144 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297220 | sp|Q1G3Q4|RITF1_ARATH | 37.857 | 140 | 76 | 5 | 7 | 146 | 8 | 136 | 1.06e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297220 | A0A396JJY5 | 91.139 | 237 | 15 | 1 | 1 | 237 | 2 | 232 | 9.51e-145 | 413 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0297220 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297220 | MtrunA17_Chr2g0320521 | 91.139 | 237 | 15 | 1 | 1 | 237 | 2 | 232 | 1.83e-148 | 413 |
| Msa0297220 | MtrunA17_Chr2g0320561 | 60.816 | 245 | 85 | 3 | 2 | 237 | 1 | 243 | 6.73e-90 | 265 |
| Msa0297220 | MtrunA17_Chr4g0020811 | 66.887 | 151 | 50 | 0 | 1 | 151 | 2 | 152 | 2.28e-68 | 207 |
| Msa0297220 | MtrunA17_Chr2g0308401 | 66.000 | 150 | 51 | 0 | 2 | 151 | 1 | 150 | 8.46e-67 | 203 |
| Msa0297220 | MtrunA17_Chr2g0320551 | 58.278 | 151 | 62 | 1 | 2 | 152 | 1 | 150 | 4.89e-58 | 181 |
| Msa0297220 | MtrunA17_Chr1g0179781 | 39.837 | 246 | 92 | 8 | 1 | 236 | 2 | 201 | 3.04e-48 | 157 |
| Msa0297220 | MtrunA17_Chr7g0265291 | 40.417 | 240 | 97 | 10 | 2 | 236 | 4 | 202 | 1.42e-43 | 145 |
| Msa0297220 | MtrunA17_Chr5g0411151 | 36.364 | 242 | 106 | 7 | 1 | 236 | 31 | 230 | 4.34e-41 | 140 |
| Msa0297220 | MtrunA17_Chr5g0395181 | 35.169 | 236 | 108 | 5 | 1 | 236 | 17 | 207 | 2.08e-40 | 138 |
| Msa0297220 | MtrunA17_Chr4g0040071 | 34.335 | 233 | 115 | 6 | 4 | 236 | 14 | 208 | 1.08e-38 | 133 |
| Msa0297220 | MtrunA17_Chr8g0366581 | 44.928 | 138 | 66 | 3 | 4 | 141 | 32 | 159 | 2.36e-36 | 128 |
| Msa0297220 | MtrunA17_Chr2g0297251 | 32.340 | 235 | 138 | 8 | 7 | 236 | 39 | 257 | 1.39e-28 | 108 |
| Msa0297220 | MtrunA17_Chr7g0230511 | 31.452 | 248 | 140 | 10 | 7 | 236 | 11 | 246 | 2.67e-27 | 105 |
| Msa0297220 | MtrunA17_Chr4g0065041 | 38.571 | 140 | 75 | 5 | 7 | 146 | 10 | 138 | 5.92e-20 | 85.5 |
| Msa0297220 | MtrunA17_Chr8g0392151 | 34.737 | 95 | 58 | 3 | 7 | 101 | 15 | 105 | 9.57e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297220 | AT1G43000.2 | 37.083 | 240 | 119 | 7 | 1 | 236 | 12 | 223 | 7.05e-46 | 152 |
| Msa0297220 | AT1G43000.1 | 37.083 | 240 | 119 | 7 | 1 | 236 | 5 | 216 | 7.72e-46 | 152 |
| Msa0297220 | AT1G21000.1 | 35.366 | 246 | 138 | 8 | 1 | 236 | 12 | 246 | 1.42e-41 | 142 |
| Msa0297220 | AT1G21000.2 | 35.366 | 246 | 138 | 8 | 1 | 236 | 9 | 243 | 1.56e-41 | 142 |
| Msa0297220 | AT1G76590.1 | 35.565 | 239 | 134 | 7 | 6 | 236 | 19 | 245 | 6.38e-40 | 138 |
| Msa0297220 | AT4G17900.1 | 48.921 | 139 | 60 | 4 | 4 | 141 | 33 | 161 | 3.79e-38 | 133 |
| Msa0297220 | AT1G32700.1 | 47.857 | 140 | 63 | 3 | 7 | 146 | 14 | 143 | 7.62e-38 | 132 |
| Msa0297220 | AT4G17900.2 | 48.921 | 139 | 60 | 4 | 4 | 141 | 19 | 147 | 1.33e-37 | 131 |
| Msa0297220 | AT2G27930.1 | 46.043 | 139 | 69 | 3 | 7 | 142 | 6 | 141 | 7.44e-35 | 123 |
| Msa0297220 | AT2G27930.4 | 46.043 | 139 | 69 | 3 | 7 | 142 | 6 | 141 | 7.44e-35 | 123 |
| Msa0297220 | AT2G27930.3 | 45.985 | 137 | 68 | 3 | 7 | 140 | 6 | 139 | 6.53e-34 | 120 |
| Msa0297220 | AT2G27930.2 | 45.985 | 137 | 68 | 3 | 7 | 140 | 6 | 139 | 6.53e-34 | 120 |
| Msa0297220 | AT1G32700.2 | 48.673 | 113 | 49 | 2 | 34 | 146 | 1 | 104 | 3.62e-30 | 110 |
| Msa0297220 | AT5G46710.3 | 34.483 | 232 | 114 | 8 | 7 | 236 | 14 | 209 | 2.27e-29 | 109 |
| Msa0297220 | AT5G46710.1 | 34.483 | 232 | 114 | 8 | 7 | 236 | 30 | 225 | 5.80e-29 | 109 |
| Msa0297220 | AT5G46710.2 | 43.704 | 135 | 65 | 4 | 7 | 140 | 30 | 154 | 1.00e-27 | 104 |
| Msa0297220 | AT1G31040.1 | 28.936 | 235 | 149 | 8 | 7 | 236 | 21 | 242 | 1.11e-22 | 93.2 |
| Msa0297220 | AT3G60670.1 | 29.084 | 251 | 150 | 9 | 4 | 237 | 6 | 245 | 6.42e-22 | 91.3 |
| Msa0297220 | AT2G12646.3 | 37.857 | 140 | 76 | 5 | 7 | 146 | 5 | 133 | 1.05e-20 | 88.2 |
| Msa0297220 | AT2G12646.1 | 37.857 | 140 | 76 | 5 | 7 | 146 | 8 | 136 | 1.08e-20 | 88.2 |
| Msa0297220 | AT2G12646.2 | 37.857 | 140 | 76 | 5 | 7 | 146 | 8 | 136 | 1.08e-20 | 88.2 |
| Msa0297220 | AT2G01818.1 | 29.060 | 234 | 139 | 8 | 7 | 237 | 13 | 222 | 3.18e-17 | 78.2 |
| Msa0297220 | AT2G27930.5 | 45.349 | 86 | 42 | 2 | 60 | 142 | 61 | 144 | 7.06e-17 | 76.3 |
| Msa0297220 | AT2G27930.6 | 45.349 | 86 | 42 | 2 | 60 | 142 | 61 | 144 | 7.06e-17 | 76.3 |
Find 35 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCTTTCTTCTTGAATT+TGG | 0.145728 | 2_3:-50881460 | None:intergenic |
| AATCGAAATTTACAAGCATT+TGG | 0.312437 | 2_3:+50880716 | Msa0297220:CDS |
| TTAATGCAAGATCCACAAAA+TGG | 0.328281 | 2_3:-50880454 | None:intergenic |
| TTCTTCGTAGGTTGGGAATA+AGG | 0.331085 | 2_3:-50880801 | None:intergenic |
| TACAAGCATTTGGATATTCT+AGG | 0.347196 | 2_3:+50880726 | Msa0297220:CDS |
| AAGAAGACGATAGGTATAAT+TGG | 0.364201 | 2_3:+50880819 | Msa0297220:CDS |
| AGTTGCTAATCACATAGGTT+TGG | 0.394909 | 2_3:-50880752 | None:intergenic |
| TGCAAAGGAGACAGAAGAAA+TGG | 0.410636 | 2_3:+50881252 | Msa0297220:CDS |
| AGAAGAAATGGAAAGATTGT+TGG | 0.417250 | 2_3:+50881264 | Msa0297220:CDS |
| TATCGTCTTCTTCGTAGGTT+GGG | 0.419261 | 2_3:-50880808 | None:intergenic |
| GCCAGAGAGCAAAAGTAATA+AGG | 0.422528 | 2_3:-50880891 | None:intergenic |
| CTTCTGTCTCCTTTGCACTT+AGG | 0.432332 | 2_3:-50881246 | None:intergenic |
| AAAGCCAAATTCAAGAAGAA+AGG | 0.446839 | 2_3:+50881456 | Msa0297220:CDS |
| AAGGTCCTACAAGATTCCTT+TGG | 0.477640 | 2_3:-50880872 | None:intergenic |
| CTATCGTCTTCTTCGTAGGT+TGG | 0.485528 | 2_3:-50880809 | None:intergenic |
| ATATGCCAAAGGAATCTTGT+AGG | 0.487935 | 2_3:+50880867 | Msa0297220:CDS |
| AAGCCAAATTCAAGAAGAAA+GGG | 0.497702 | 2_3:+50881457 | Msa0297220:CDS |
| AATCGAAAATTAAATGAAGC+GGG | 0.509554 | 2_3:+50881343 | Msa0297220:CDS |
| AGGATATGATGTTCGTGCCC+TGG | 0.529076 | 2_3:+50880326 | None:intergenic |
| TTTGAATGCATAAAGAAGGA+TGG | 0.531033 | 2_3:+50881214 | Msa0297220:CDS |
| TGTAAAGTTGCTAATCACAT+AGG | 0.533475 | 2_3:-50880757 | None:intergenic |
| AGAAATGGAAAGATTGTTGG+AGG | 0.534953 | 2_3:+50881267 | Msa0297220:CDS |
| CAAGTTTGAATGCATAAAGA+AGG | 0.541080 | 2_3:+50881210 | Msa0297220:intron |
| AACTTCACATGATGTGAAGA+AGG | 0.546693 | 2_3:-50880374 | None:intergenic |
| TTGAATGCATAAAGAAGGAT+GGG | 0.549402 | 2_3:+50881215 | Msa0297220:CDS |
| ATTGTTGGAGGAATCAATCA+AGG | 0.555066 | 2_3:+50881279 | Msa0297220:CDS |
| ATACCTATCGTCTTCTTCGT+AGG | 0.556131 | 2_3:-50880813 | None:intergenic |
| AAATCGAAAATTAAATGAAG+CGG | 0.566619 | 2_3:+50881342 | Msa0297220:CDS |
| CAGTTGTATTCATAAACAAG+AGG | 0.585618 | 2_3:+50880778 | Msa0297220:CDS |
| AAGAAAGGGAATTCCTCGTA+GGG | 0.587893 | 2_3:+50881471 | Msa0297220:CDS |
| GAAGAAAGGGAATTCCTCGT+AGG | 0.613671 | 2_3:+50881470 | Msa0297220:CDS |
| CAACCTACGAAGAAGACGAT+AGG | 0.637898 | 2_3:+50880810 | Msa0297220:CDS |
| TGAATGCATAAAGAAGGATG+GGG | 0.648201 | 2_3:+50881216 | Msa0297220:CDS |
| GAATGCATAAAGAAGGATGG+GGG | 0.668084 | 2_3:+50881217 | Msa0297220:CDS |
| ATCTTTGTAAGATATGCCAA+AGG | 0.674093 | 2_3:+50880856 | Msa0297220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATTAAAGAAAAG+TGG | - | chr2_3:50880581-50880600 | None:intergenic | 10.0% |
| !! | ACAAAATAAATTAAAAAAAG+AGG | - | chr2_3:50880983-50881002 | None:intergenic | 10.0% |
| !! | AAAAATTAATTAAAGAAAAG+TGG | - | chr2_3:50880581-50880600 | None:intergenic | 10.0% |
| !! | ACAAAATAAATTAAAAAAAG+AGG | - | chr2_3:50880983-50881002 | None:intergenic | 10.0% |
| !!! | TTGTATAATTTTTTTGACTT+TGG | + | chr2_3:50880618-50880637 | Msa0297220:intron | 15.0% |
| !!! | TGTATAATTTTTTTGACTTT+GGG | + | chr2_3:50880619-50880638 | Msa0297220:intron | 15.0% |
| !!! | TTGTATAATTTTTTTGACTT+TGG | + | chr2_3:50880618-50880637 | Msa0297220:intron | 15.0% |
| !!! | TGTATAATTTTTTTGACTTT+GGG | + | chr2_3:50880619-50880638 | Msa0297220:intron | 15.0% |
| !! | AAAAAGAGGATCTATAAAAA+AGG | - | chr2_3:50880969-50880988 | None:intergenic | 20.0% |
| !!! | CAATCGCTTAATTTTTTTAT+TGG | + | chr2_3:50881078-50881097 | Msa0297220:intron | 20.0% |
| !!! | TTTTTTATTGGTGTAAAGAA+TGG | + | chr2_3:50881090-50881109 | Msa0297220:intron | 20.0% |
| !!! | TTTTTATTGGTGTAAAGAAT+GGG | + | chr2_3:50881091-50881110 | Msa0297220:intron | 20.0% |
| !! | AAATCGAAAATTAAATGAAG+CGG | + | chr2_3:50881342-50881361 | Msa0297220:CDS | 20.0% |
| !! | AAAAAGAGGATCTATAAAAA+AGG | - | chr2_3:50880969-50880988 | None:intergenic | 20.0% |
| !!! | CAATCGCTTAATTTTTTTAT+TGG | + | chr2_3:50881078-50881097 | Msa0297220:intron | 20.0% |
| !!! | TTTTTTATTGGTGTAAAGAA+TGG | + | chr2_3:50881090-50881109 | Msa0297220:intron | 20.0% |
| !!! | TTTTTATTGGTGTAAAGAAT+GGG | + | chr2_3:50881091-50881110 | Msa0297220:intron | 20.0% |
| !! | AAATCGAAAATTAAATGAAG+CGG | + | chr2_3:50881342-50881361 | Msa0297220:CDS | 20.0% |
| !! | CAAAAATTTGCTTGAAATCA+CGG | + | chr2_3:50880351-50880370 | Msa0297220:CDS | 25.0% |
| ! | TATACTTGCAATTACAAATC+AGG | + | chr2_3:50880659-50880678 | Msa0297220:intron | 25.0% |
| ! | AATCGAAATTTACAAGCATT+TGG | + | chr2_3:50880716-50880735 | Msa0297220:CDS | 25.0% |
| ! | ATAAAAAAGGAGACATGATA+AGG | - | chr2_3:50880956-50880975 | None:intergenic | 25.0% |
| !!! | GATTTTTTGGCTTTTTGTTT+TGG | - | chr2_3:50881307-50881326 | None:intergenic | 25.0% |
| ! | AATCGAAAATTAAATGAAGC+GGG | + | chr2_3:50881343-50881362 | Msa0297220:CDS | 25.0% |
| !! | CAAAAATTTGCTTGAAATCA+CGG | + | chr2_3:50880351-50880370 | Msa0297220:CDS | 25.0% |
| ! | TATACTTGCAATTACAAATC+AGG | + | chr2_3:50880659-50880678 | Msa0297220:intron | 25.0% |
| ! | AATCGAAATTTACAAGCATT+TGG | + | chr2_3:50880716-50880735 | Msa0297220:CDS | 25.0% |
| ! | ATAAAAAAGGAGACATGATA+AGG | - | chr2_3:50880956-50880975 | None:intergenic | 25.0% |
| !!! | GATTTTTTGGCTTTTTGTTT+TGG | - | chr2_3:50881307-50881326 | None:intergenic | 25.0% |
| ! | AATCGAAAATTAAATGAAGC+GGG | + | chr2_3:50881343-50881362 | Msa0297220:CDS | 25.0% |
| TTAATGCAAGATCCACAAAA+TGG | - | chr2_3:50880457-50880476 | None:intergenic | 30.0% | |
| TACAAGCATTTGGATATTCT+AGG | + | chr2_3:50880726-50880745 | Msa0297220:CDS | 30.0% | |
| TGTAAAGTTGCTAATCACAT+AGG | - | chr2_3:50880760-50880779 | None:intergenic | 30.0% | |
| CAGTTGTATTCATAAACAAG+AGG | + | chr2_3:50880778-50880797 | Msa0297220:CDS | 30.0% | |
| AAGAAGACGATAGGTATAAT+TGG | + | chr2_3:50880819-50880838 | Msa0297220:CDS | 30.0% | |
| ATCTTTGTAAGATATGCCAA+AGG | + | chr2_3:50880856-50880875 | Msa0297220:CDS | 30.0% | |
| CAAGTTTGAATGCATAAAGA+AGG | + | chr2_3:50881210-50881229 | Msa0297220:intron | 30.0% | |
| TTTGAATGCATAAAGAAGGA+TGG | + | chr2_3:50881214-50881233 | Msa0297220:CDS | 30.0% | |
| TTGAATGCATAAAGAAGGAT+GGG | + | chr2_3:50881215-50881234 | Msa0297220:CDS | 30.0% | |
| AGAAGAAATGGAAAGATTGT+TGG | + | chr2_3:50881264-50881283 | Msa0297220:CDS | 30.0% | |
| ! | ATTTTGTTCACGCGATTTTT+TGG | - | chr2_3:50881320-50881339 | None:intergenic | 30.0% |
| ACGAAGAGAATGAAGAAAAA+AGG | + | chr2_3:50881383-50881402 | Msa0297220:CDS | 30.0% | |
| CGAAGAGAATGAAGAAAAAA+GGG | + | chr2_3:50881384-50881403 | Msa0297220:CDS | 30.0% | |
| !!! | CTTGAATTTGGCTTTTTGAT+AGG | - | chr2_3:50881451-50881470 | None:intergenic | 30.0% |
| AAAGCCAAATTCAAGAAGAA+AGG | + | chr2_3:50881456-50881475 | Msa0297220:CDS | 30.0% | |
| AAGCCAAATTCAAGAAGAAA+GGG | + | chr2_3:50881457-50881476 | Msa0297220:CDS | 30.0% | |
| ATTCCCTTTCTTCTTGAATT+TGG | - | chr2_3:50881463-50881482 | None:intergenic | 30.0% | |
| TTAATGCAAGATCCACAAAA+TGG | - | chr2_3:50880457-50880476 | None:intergenic | 30.0% | |
| TACAAGCATTTGGATATTCT+AGG | + | chr2_3:50880726-50880745 | Msa0297220:CDS | 30.0% | |
| TGTAAAGTTGCTAATCACAT+AGG | - | chr2_3:50880760-50880779 | None:intergenic | 30.0% | |
| CAGTTGTATTCATAAACAAG+AGG | + | chr2_3:50880778-50880797 | Msa0297220:CDS | 30.0% | |
| AAGAAGACGATAGGTATAAT+TGG | + | chr2_3:50880819-50880838 | Msa0297220:CDS | 30.0% | |
| ATCTTTGTAAGATATGCCAA+AGG | + | chr2_3:50880856-50880875 | Msa0297220:CDS | 30.0% | |
| CAAGTTTGAATGCATAAAGA+AGG | + | chr2_3:50881210-50881229 | Msa0297220:intron | 30.0% | |
| TTTGAATGCATAAAGAAGGA+TGG | + | chr2_3:50881214-50881233 | Msa0297220:CDS | 30.0% | |
| TTGAATGCATAAAGAAGGAT+GGG | + | chr2_3:50881215-50881234 | Msa0297220:CDS | 30.0% | |
| AGAAGAAATGGAAAGATTGT+TGG | + | chr2_3:50881264-50881283 | Msa0297220:CDS | 30.0% | |
| ! | ATTTTGTTCACGCGATTTTT+TGG | - | chr2_3:50881320-50881339 | None:intergenic | 30.0% |
| ACGAAGAGAATGAAGAAAAA+AGG | + | chr2_3:50881383-50881402 | Msa0297220:CDS | 30.0% | |
| CGAAGAGAATGAAGAAAAAA+GGG | + | chr2_3:50881384-50881403 | Msa0297220:CDS | 30.0% | |
| !!! | CTTGAATTTGGCTTTTTGAT+AGG | - | chr2_3:50881451-50881470 | None:intergenic | 30.0% |
| AAAGCCAAATTCAAGAAGAA+AGG | + | chr2_3:50881456-50881475 | Msa0297220:CDS | 30.0% | |
| AAGCCAAATTCAAGAAGAAA+GGG | + | chr2_3:50881457-50881476 | Msa0297220:CDS | 30.0% | |
| ATTCCCTTTCTTCTTGAATT+TGG | - | chr2_3:50881463-50881482 | None:intergenic | 30.0% | |
| !! | TCAAGCAAATTTTTGAGCCA+GGG | - | chr2_3:50880346-50880365 | None:intergenic | 35.0% |
| !! | TTCAAGCAAATTTTTGAGCC+AGG | - | chr2_3:50880347-50880366 | None:intergenic | 35.0% |
| AACTTCACATGATGTGAAGA+AGG | - | chr2_3:50880377-50880396 | None:intergenic | 35.0% | |
| ! | TGCAATGACAATCCATTTTG+TGG | + | chr2_3:50880442-50880461 | Msa0297220:CDS | 35.0% |
| TCCAAGTGAGTGTTCTTTAA+AGG | + | chr2_3:50880503-50880522 | Msa0297220:intron | 35.0% | |
| CCAAGTGAGTGTTCTTTAAA+GGG | + | chr2_3:50880504-50880523 | Msa0297220:intron | 35.0% | |
| TTGCAATTACAAATCAGGTG+AGG | + | chr2_3:50880664-50880683 | Msa0297220:intron | 35.0% | |
| AGTTGCTAATCACATAGGTT+TGG | - | chr2_3:50880755-50880774 | None:intergenic | 35.0% | |
| ATATGCCAAAGGAATCTTGT+AGG | + | chr2_3:50880867-50880886 | Msa0297220:CDS | 35.0% | |
| !! | ACCTTATTACTTTTGCTCTC+TGG | + | chr2_3:50880890-50880909 | Msa0297220:CDS | 35.0% |
| TGAATGCATAAAGAAGGATG+GGG | + | chr2_3:50881216-50881235 | Msa0297220:CDS | 35.0% | |
| AGAAATGGAAAGATTGTTGG+AGG | + | chr2_3:50881267-50881286 | Msa0297220:CDS | 35.0% | |
| ATTGTTGGAGGAATCAATCA+AGG | + | chr2_3:50881279-50881298 | Msa0297220:CDS | 35.0% | |
| AGAGAATGAAGAAAAAAGGG+AGG | + | chr2_3:50881387-50881406 | Msa0297220:CDS | 35.0% | |
| !! | TCAAGCAAATTTTTGAGCCA+GGG | - | chr2_3:50880346-50880365 | None:intergenic | 35.0% |
| !! | TTCAAGCAAATTTTTGAGCC+AGG | - | chr2_3:50880347-50880366 | None:intergenic | 35.0% |
| AACTTCACATGATGTGAAGA+AGG | - | chr2_3:50880377-50880396 | None:intergenic | 35.0% | |
| ! | TGCAATGACAATCCATTTTG+TGG | + | chr2_3:50880442-50880461 | Msa0297220:CDS | 35.0% |
| TCCAAGTGAGTGTTCTTTAA+AGG | + | chr2_3:50880503-50880522 | Msa0297220:intron | 35.0% | |
| CCAAGTGAGTGTTCTTTAAA+GGG | + | chr2_3:50880504-50880523 | Msa0297220:intron | 35.0% | |
| TTGCAATTACAAATCAGGTG+AGG | + | chr2_3:50880664-50880683 | Msa0297220:intron | 35.0% | |
| AGTTGCTAATCACATAGGTT+TGG | - | chr2_3:50880755-50880774 | None:intergenic | 35.0% | |
| ATATGCCAAAGGAATCTTGT+AGG | + | chr2_3:50880867-50880886 | Msa0297220:CDS | 35.0% | |
| !! | ACCTTATTACTTTTGCTCTC+TGG | + | chr2_3:50880890-50880909 | Msa0297220:CDS | 35.0% |
| TGAATGCATAAAGAAGGATG+GGG | + | chr2_3:50881216-50881235 | Msa0297220:CDS | 35.0% | |
| AGAAATGGAAAGATTGTTGG+AGG | + | chr2_3:50881267-50881286 | Msa0297220:CDS | 35.0% | |
| ATTGTTGGAGGAATCAATCA+AGG | + | chr2_3:50881279-50881298 | Msa0297220:CDS | 35.0% | |
| AGAGAATGAAGAAAAAAGGG+AGG | + | chr2_3:50881387-50881406 | Msa0297220:CDS | 35.0% | |
| ! | CCCTTTAAAGAACACTCACT+TGG | - | chr2_3:50880507-50880526 | None:intergenic | 40.0% |
| ! | TTCTTCGTAGGTTGGGAATA+AGG | - | chr2_3:50880804-50880823 | None:intergenic | 40.0% |
| TATCGTCTTCTTCGTAGGTT+GGG | - | chr2_3:50880811-50880830 | None:intergenic | 40.0% | |
| ATACCTATCGTCTTCTTCGT+AGG | - | chr2_3:50880816-50880835 | None:intergenic | 40.0% | |
| AAGGTCCTACAAGATTCCTT+TGG | - | chr2_3:50880875-50880894 | None:intergenic | 40.0% | |
| GCCAGAGAGCAAAAGTAATA+AGG | - | chr2_3:50880894-50880913 | None:intergenic | 40.0% | |
| GAATGCATAAAGAAGGATGG+GGG | + | chr2_3:50881217-50881236 | Msa0297220:CDS | 40.0% | |
| TGCAAAGGAGACAGAAGAAA+TGG | + | chr2_3:50881252-50881271 | Msa0297220:CDS | 40.0% | |
| AAGAAAGGGAATTCCTCGTA+GGG | + | chr2_3:50881471-50881490 | Msa0297220:CDS | 40.0% | |
| ! | CCCTTTAAAGAACACTCACT+TGG | - | chr2_3:50880507-50880526 | None:intergenic | 40.0% |
| ! | TTCTTCGTAGGTTGGGAATA+AGG | - | chr2_3:50880804-50880823 | None:intergenic | 40.0% |
| TATCGTCTTCTTCGTAGGTT+GGG | - | chr2_3:50880811-50880830 | None:intergenic | 40.0% | |
| ATACCTATCGTCTTCTTCGT+AGG | - | chr2_3:50880816-50880835 | None:intergenic | 40.0% | |
| AAGGTCCTACAAGATTCCTT+TGG | - | chr2_3:50880875-50880894 | None:intergenic | 40.0% | |
| GCCAGAGAGCAAAAGTAATA+AGG | - | chr2_3:50880894-50880913 | None:intergenic | 40.0% | |
| GAATGCATAAAGAAGGATGG+GGG | + | chr2_3:50881217-50881236 | Msa0297220:CDS | 40.0% | |
| TGCAAAGGAGACAGAAGAAA+TGG | + | chr2_3:50881252-50881271 | Msa0297220:CDS | 40.0% | |
| AAGAAAGGGAATTCCTCGTA+GGG | + | chr2_3:50881471-50881490 | Msa0297220:CDS | 40.0% | |
| CTATCGTCTTCTTCGTAGGT+TGG | - | chr2_3:50880812-50880831 | None:intergenic | 45.0% | |
| CAACCTACGAAGAAGACGAT+AGG | + | chr2_3:50880810-50880829 | Msa0297220:CDS | 45.0% | |
| !! | GGGCTTTTTCCTAAGTGCAA+AGG | + | chr2_3:50881237-50881256 | Msa0297220:CDS | 45.0% |
| CTTCTGTCTCCTTTGCACTT+AGG | - | chr2_3:50881249-50881268 | None:intergenic | 45.0% | |
| GAAGAAAGGGAATTCCTCGT+AGG | + | chr2_3:50881470-50881489 | Msa0297220:CDS | 45.0% | |
| !! | TAAAAAAAGGGTGCCCTACG+AGG | - | chr2_3:50881487-50881506 | None:intergenic | 45.0% |
| CTATCGTCTTCTTCGTAGGT+TGG | - | chr2_3:50880812-50880831 | None:intergenic | 45.0% | |
| CAACCTACGAAGAAGACGAT+AGG | + | chr2_3:50880810-50880829 | Msa0297220:CDS | 45.0% | |
| !! | GGGCTTTTTCCTAAGTGCAA+AGG | + | chr2_3:50881237-50881256 | Msa0297220:CDS | 45.0% |
| CTTCTGTCTCCTTTGCACTT+AGG | - | chr2_3:50881249-50881268 | None:intergenic | 45.0% | |
| GAAGAAAGGGAATTCCTCGT+AGG | + | chr2_3:50881470-50881489 | Msa0297220:CDS | 45.0% | |
| !! | TAAAAAAAGGGTGCCCTACG+AGG | - | chr2_3:50881487-50881506 | None:intergenic | 45.0% |
| !!! | TTATGTTTATTAATTTTTAT+TGG | + | chr2_3:50881050-50881069 | Msa0297220:intron | 5.0% |
| !!! | TTATGTTTATTAATTTTTAT+TGG | + | chr2_3:50881050-50881069 | Msa0297220:intron | 5.0% |
| ! | CTTTTGCTCTCTGGCATGCA+AGG | + | chr2_3:50880899-50880918 | Msa0297220:CDS | 50.0% |
| ! | CTTTTGCTCTCTGGCATGCA+AGG | + | chr2_3:50880899-50880918 | Msa0297220:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50880328 | 50881507 | 50880328 | ID=Msa0297220;Name=Msa0297220 |
| chr2_3 | mRNA | 50880328 | 50881507 | 50880328 | ID=Msa0297220-mRNA-1;Parent=Msa0297220;Name=Msa0297220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|237 |
| chr2_3 | exon | 50880328 | 50880507 | 50880328 | ID=Msa0297220-mRNA-1:exon:15983;Parent=Msa0297220-mRNA-1 |
| chr2_3 | exon | 50880681 | 50880920 | 50880681 | ID=Msa0297220-mRNA-1:exon:15984;Parent=Msa0297220-mRNA-1 |
| chr2_3 | exon | 50881214 | 50881507 | 50881214 | ID=Msa0297220-mRNA-1:exon:15985;Parent=Msa0297220-mRNA-1 |
| chr2_3 | CDS | 50880328 | 50880507 | 50880328 | ID=Msa0297220-mRNA-1:cds;Parent=Msa0297220-mRNA-1 |
| chr2_3 | CDS | 50880681 | 50880920 | 50880681 | ID=Msa0297220-mRNA-1:cds;Parent=Msa0297220-mRNA-1 |
| chr2_3 | CDS | 50881214 | 50881507 | 50881214 | ID=Msa0297220-mRNA-1:cds;Parent=Msa0297220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
