Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297290 | KEH38906.1 | 84.711 | 242 | 37 | 0 | 5 | 246 | 1 | 242 | 1.72e-148 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297290 | sp|Q1G3Q4|RITF1_ARATH | 40.000 | 140 | 73 | 5 | 9 | 148 | 8 | 136 | 9.59e-24 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297290 | A0A072VBE7 | 84.711 | 242 | 37 | 0 | 5 | 246 | 1 | 242 | 8.22e-149 | 424 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0297290 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297290 | MtrunA17_Chr2g0320561 | 91.770 | 243 | 20 | 0 | 4 | 246 | 1 | 243 | 2.57e-151 | 421 |
| Msa0297290 | MtrunA17_Chr2g0320521 | 61.066 | 244 | 82 | 3 | 3 | 246 | 2 | 232 | 1.88e-96 | 281 |
| Msa0297290 | MtrunA17_Chr2g0320551 | 79.605 | 152 | 31 | 0 | 4 | 155 | 1 | 152 | 9.96e-87 | 254 |
| Msa0297290 | MtrunA17_Chr4g0020811 | 73.510 | 151 | 40 | 0 | 3 | 153 | 2 | 152 | 2.99e-78 | 233 |
| Msa0297290 | MtrunA17_Chr2g0308401 | 73.333 | 150 | 40 | 0 | 4 | 153 | 1 | 150 | 3.09e-77 | 230 |
| Msa0297290 | MtrunA17_Chr1g0179781 | 38.306 | 248 | 100 | 9 | 3 | 245 | 2 | 201 | 2.76e-41 | 140 |
| Msa0297290 | MtrunA17_Chr7g0265291 | 38.462 | 247 | 105 | 8 | 1 | 245 | 1 | 202 | 6.59e-39 | 134 |
| Msa0297290 | MtrunA17_Chr5g0411151 | 41.573 | 178 | 87 | 5 | 8 | 180 | 36 | 201 | 1.97e-37 | 131 |
| Msa0297290 | MtrunA17_Chr4g0040071 | 46.809 | 141 | 65 | 3 | 8 | 148 | 16 | 146 | 6.82e-37 | 129 |
| Msa0297290 | MtrunA17_Chr5g0395181 | 43.972 | 141 | 69 | 3 | 8 | 148 | 22 | 152 | 3.56e-34 | 122 |
| Msa0297290 | MtrunA17_Chr8g0366581 | 45.255 | 137 | 65 | 3 | 8 | 144 | 34 | 160 | 7.39e-34 | 122 |
| Msa0297290 | MtrunA17_Chr2g0297251 | 36.735 | 147 | 82 | 4 | 9 | 155 | 39 | 174 | 2.17e-24 | 97.8 |
| Msa0297290 | MtrunA17_Chr7g0230511 | 28.740 | 254 | 151 | 10 | 7 | 245 | 8 | 246 | 2.36e-24 | 97.4 |
| Msa0297290 | MtrunA17_Chr4g0065041 | 37.589 | 141 | 78 | 4 | 8 | 148 | 8 | 138 | 1.68e-23 | 95.5 |
| Msa0297290 | MtrunA17_Chr4g0052451 | 37.895 | 95 | 57 | 1 | 51 | 145 | 1 | 93 | 1.81e-15 | 69.7 |
| Msa0297290 | MtrunA17_Chr8g0392151 | 30.968 | 155 | 90 | 5 | 9 | 150 | 15 | 165 | 1.29e-14 | 70.9 |
| Msa0297290 | MtrunA17_Chr8g0386511 | 26.108 | 203 | 95 | 8 | 47 | 246 | 4 | 154 | 6.29e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297290 | AT1G21000.2 | 36.032 | 247 | 142 | 9 | 3 | 245 | 9 | 243 | 1.29e-38 | 135 |
| Msa0297290 | AT1G21000.1 | 36.032 | 247 | 142 | 9 | 3 | 245 | 12 | 246 | 1.32e-38 | 135 |
| Msa0297290 | AT1G43000.2 | 34.959 | 246 | 123 | 7 | 3 | 245 | 12 | 223 | 1.34e-38 | 134 |
| Msa0297290 | AT1G43000.1 | 34.959 | 246 | 123 | 7 | 3 | 245 | 5 | 216 | 1.82e-38 | 134 |
| Msa0297290 | AT1G76590.1 | 35.417 | 240 | 140 | 8 | 8 | 245 | 19 | 245 | 1.15e-37 | 132 |
| Msa0297290 | AT4G17900.1 | 48.551 | 138 | 60 | 4 | 8 | 144 | 35 | 162 | 1.59e-36 | 129 |
| Msa0297290 | AT4G17900.2 | 48.551 | 138 | 60 | 4 | 8 | 144 | 21 | 148 | 3.85e-36 | 127 |
| Msa0297290 | AT1G32700.1 | 45.714 | 140 | 66 | 3 | 9 | 148 | 14 | 143 | 1.79e-33 | 120 |
| Msa0297290 | AT2G27930.3 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.44e-32 | 116 |
| Msa0297290 | AT2G27930.2 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.44e-32 | 116 |
| Msa0297290 | AT2G27930.1 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 3.30e-32 | 117 |
| Msa0297290 | AT2G27930.4 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 3.30e-32 | 117 |
| Msa0297290 | AT1G32700.2 | 48.214 | 112 | 49 | 2 | 37 | 148 | 2 | 104 | 3.04e-28 | 106 |
| Msa0297290 | AT5G46710.3 | 43.796 | 137 | 66 | 4 | 9 | 144 | 14 | 140 | 5.65e-27 | 103 |
| Msa0297290 | AT5G46710.1 | 43.796 | 137 | 66 | 4 | 9 | 144 | 30 | 156 | 5.97e-27 | 104 |
| Msa0297290 | AT5G46710.2 | 43.704 | 135 | 65 | 4 | 9 | 142 | 30 | 154 | 1.54e-26 | 101 |
| Msa0297290 | AT2G12646.3 | 39.583 | 144 | 76 | 5 | 5 | 148 | 1 | 133 | 6.12e-25 | 99.8 |
| Msa0297290 | AT2G12646.1 | 40.000 | 140 | 73 | 5 | 9 | 148 | 8 | 136 | 9.75e-25 | 99.0 |
| Msa0297290 | AT2G12646.2 | 40.000 | 140 | 73 | 5 | 9 | 148 | 8 | 136 | 9.75e-25 | 99.0 |
| Msa0297290 | AT1G31040.1 | 35.211 | 142 | 80 | 4 | 9 | 150 | 21 | 150 | 2.92e-23 | 94.7 |
| Msa0297290 | AT3G60670.1 | 36.765 | 136 | 75 | 4 | 9 | 144 | 9 | 133 | 1.44e-19 | 85.1 |
| Msa0297290 | AT2G01818.1 | 29.752 | 242 | 134 | 10 | 9 | 246 | 13 | 222 | 4.23e-19 | 83.2 |
| Msa0297290 | AT2G27930.5 | 51.190 | 84 | 36 | 2 | 62 | 142 | 61 | 142 | 1.96e-17 | 78.2 |
| Msa0297290 | AT2G27930.6 | 51.190 | 84 | 36 | 2 | 62 | 142 | 61 | 142 | 1.96e-17 | 78.2 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCATTTCTGAACTTGTT+TGG | 0.226434 | 2_3:-50978338 | None:intergenic |
| CCAGTTTGCGTTTATCAAAA+AGG | 0.264489 | 2_3:+50979096 | Msa0297290:intron |
| CGCAAGAATTGATGAGAAAA+AGG | 0.267119 | 2_3:+50979252 | Msa0297290:CDS |
| TCCATTTCTTCCATCTCTCT+TGG | 0.271024 | 2_3:-50979139 | None:intergenic |
| TTTCCAATGTTGAACCTCTT+AGG | 0.309596 | 2_3:-50978740 | None:intergenic |
| CCATTTCTTCCATCTCTCTT+GGG | 0.325447 | 2_3:-50979138 | None:intergenic |
| TCTATACAAAATTCACATAA+TGG | 0.333459 | 2_3:-50978392 | None:intergenic |
| CCCAAGAGAGATGGAAGAAA+TGG | 0.347606 | 2_3:+50979138 | Msa0297290:CDS |
| CATTTCTGAACTTGTTTGGA+TGG | 0.368188 | 2_3:-50978334 | None:intergenic |
| ACCTTGGCTTGTAAACTTGC+TGG | 0.395128 | 2_3:+50978280 | Msa0297290:CDS |
| GAAGCCGATGAGCGATTAAC+CGG | 0.402296 | 2_3:-50979334 | None:intergenic |
| AAAGAAAGGGAATAGCTCAT+AGG | 0.424904 | 2_3:+50979377 | Msa0297290:CDS |
| AATGTTGAACCTCTTAGGTT+GGG | 0.427697 | 2_3:-50978735 | None:intergenic |
| TGACAGAGAAAGCATTCTTC+CGG | 0.441662 | 2_3:+50979315 | Msa0297290:CDS |
| ATTTCTGAACTTGTTTGGAT+GGG | 0.453864 | 2_3:-50978333 | None:intergenic |
| CAATGTTGAACCTCTTAGGT+TGG | 0.476236 | 2_3:-50978736 | None:intergenic |
| CACATGTTTGTAAATTTCGT+TGG | 0.484536 | 2_3:-50978642 | None:intergenic |
| AAGAAAGGGAATAGCTCATA+GGG | 0.490291 | 2_3:+50979378 | Msa0297290:CDS |
| GAGCTCATGCCCAACCTAAG+AGG | 0.493266 | 2_3:+50978726 | Msa0297290:CDS |
| GCCAGCAAGTTTACAAGCCA+AGG | 0.514131 | 2_3:-50978281 | None:intergenic |
| AAAAGAGTCCCTATTGTGAC+CGG | 0.541668 | 2_3:-50978765 | None:intergenic |
| ATATCTAGATCAATCAATCA+AGG | 0.554194 | 2_3:+50979165 | Msa0297290:CDS |
| TACAAACATGTGGATATCCT+CGG | 0.556715 | 2_3:+50978653 | Msa0297290:CDS |
| AAGAATGCTTTCTCTGTCAT+CGG | 0.559247 | 2_3:-50979311 | None:intergenic |
| CCAAAGAGCAAAAGTAGGTA+GGG | 0.559658 | 2_3:-50978817 | None:intergenic |
| AGGATATGATGAGTGTACCT+TGG | 0.561440 | 2_3:+50978264 | Msa0297290:intron |
| TTTCGTAAACCCAAGAGAGA+TGG | 0.562278 | 2_3:+50979129 | Msa0297290:CDS |
| TCTTCCGGTTAATCGCTCAT+CGG | 0.573214 | 2_3:+50979330 | Msa0297290:CDS |
| TCACGTAGGTTTGAATTCCG+AGG | 0.586677 | 2_3:-50978670 | None:intergenic |
| GCCAAAGAGCAAAAGTAGGT+AGG | 0.587378 | 2_3:-50978818 | None:intergenic |
| AAGAAGATCATCATATAATG+AGG | 0.589252 | 2_3:+50978610 | Msa0297290:CDS |
| CAACGAAATTTACAAACATG+TGG | 0.600716 | 2_3:+50978643 | Msa0297290:CDS |
| CAACCTAAGAGGTTCAACAT+TGG | 0.618975 | 2_3:+50978737 | Msa0297290:CDS |
| GCATGCCAAAGAGCAAAAGT+AGG | 0.621061 | 2_3:-50978822 | None:intergenic |
| TGTATAGAATCTCGTCACAA+AGG | 0.625069 | 2_3:+50978407 | Msa0297290:CDS |
| AAGATCATCATATAATGAGG+TGG | 0.649716 | 2_3:+50978613 | Msa0297290:CDS |
| ACTAGAGCTATTAATCACGT+AGG | 0.680389 | 2_3:-50978684 | None:intergenic |
| CAAACAAGTTCAGAAATGAG+CGG | 0.722844 | 2_3:+50978339 | Msa0297290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAATACAAAGAATT+AGG | - | chr2_3:50978217-50978236 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTAATGCAATTTT+TGG | + | chr2_3:50978229-50978248 | Msa0297290:intron | 15.0% |
| !!! | TTTTTCTTAATGCAATTTTT+GGG | + | chr2_3:50978230-50978249 | Msa0297290:intron | 15.0% |
| !! | AGAAAAAAATACAAAGAATT+AGG | - | chr2_3:50978217-50978236 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTAATGCAATTTT+TGG | + | chr2_3:50978229-50978248 | Msa0297290:intron | 15.0% |
| !!! | TTTTTCTTAATGCAATTTTT+GGG | + | chr2_3:50978230-50978249 | Msa0297290:intron | 15.0% |
| !! | GCTTGACATTATAATTAAAA+TGG | - | chr2_3:50978195-50978214 | None:intergenic | 20.0% |
| !! | TCTATACAAAATTCACATAA+TGG | - | chr2_3:50978395-50978414 | None:intergenic | 20.0% |
| !!! | ATAATATTTTGCAATGATCT+AGG | + | chr2_3:50978479-50978498 | Msa0297290:intron | 20.0% |
| !!! | ATGTTTTAAACGGTAAAAAA+TGG | + | chr2_3:50978882-50978901 | Msa0297290:intron | 20.0% |
| !! | ATTAATAGTAATAAAAGGAG+TGG | - | chr2_3:50978939-50978958 | None:intergenic | 20.0% |
| !!! | TCCTTTTATTACTATTAATC+CGG | + | chr2_3:50978940-50978959 | Msa0297290:intron | 20.0% |
| !! | GCTTGACATTATAATTAAAA+TGG | - | chr2_3:50978195-50978214 | None:intergenic | 20.0% |
| !! | TCTATACAAAATTCACATAA+TGG | - | chr2_3:50978395-50978414 | None:intergenic | 20.0% |
| !!! | ATAATATTTTGCAATGATCT+AGG | + | chr2_3:50978479-50978498 | Msa0297290:intron | 20.0% |
| !!! | ATGTTTTAAACGGTAAAAAA+TGG | + | chr2_3:50978882-50978901 | Msa0297290:intron | 20.0% |
| !! | ATTAATAGTAATAAAAGGAG+TGG | - | chr2_3:50978939-50978958 | None:intergenic | 20.0% |
| !!! | TCCTTTTATTACTATTAATC+CGG | + | chr2_3:50978940-50978959 | Msa0297290:intron | 20.0% |
| !!! | TTAATGCAATTTTTGGGTTT+TGG | + | chr2_3:50978236-50978255 | Msa0297290:intron | 25.0% |
| ! | CAAATTAAATAACACTCACT+TGG | - | chr2_3:50978445-50978464 | None:intergenic | 25.0% |
| ! | AAGAAGATCATCATATAATG+AGG | + | chr2_3:50978610-50978629 | Msa0297290:CDS | 25.0% |
| ! | TCCGGATTAATAGTAATAAA+AGG | - | chr2_3:50978944-50978963 | None:intergenic | 25.0% |
| ! | ATATCTAGATCAATCAATCA+AGG | + | chr2_3:50979165-50979184 | Msa0297290:CDS | 25.0% |
| !!! | TTTTTTGCCTTCTCTTTTTT+AGG | - | chr2_3:50979196-50979215 | None:intergenic | 25.0% |
| ! | AAGCCAAATTCAAAAAGAAA+GGG | + | chr2_3:50979364-50979383 | Msa0297290:CDS | 25.0% |
| !! | ATTCCCTTTCTTTTTGAATT+TGG | - | chr2_3:50979370-50979389 | None:intergenic | 25.0% |
| !!! | TTAATGCAATTTTTGGGTTT+TGG | + | chr2_3:50978236-50978255 | Msa0297290:intron | 25.0% |
| ! | CAAATTAAATAACACTCACT+TGG | - | chr2_3:50978445-50978464 | None:intergenic | 25.0% |
| ! | AAGAAGATCATCATATAATG+AGG | + | chr2_3:50978610-50978629 | Msa0297290:CDS | 25.0% |
| ! | TCCGGATTAATAGTAATAAA+AGG | - | chr2_3:50978944-50978963 | None:intergenic | 25.0% |
| ! | ATATCTAGATCAATCAATCA+AGG | + | chr2_3:50979165-50979184 | Msa0297290:CDS | 25.0% |
| !!! | TTTTTTGCCTTCTCTTTTTT+AGG | - | chr2_3:50979196-50979215 | None:intergenic | 25.0% |
| ! | AAGCCAAATTCAAAAAGAAA+GGG | + | chr2_3:50979364-50979383 | Msa0297290:CDS | 25.0% |
| !! | ATTCCCTTTCTTTTTGAATT+TGG | - | chr2_3:50979370-50979389 | None:intergenic | 25.0% |
| !!! | ATTTTTGGGTTTTGGTTCTT+AGG | + | chr2_3:50978244-50978263 | Msa0297290:intron | 30.0% |
| ! | ATTTCTGAACTTGTTTGGAT+GGG | - | chr2_3:50978336-50978355 | None:intergenic | 30.0% |
| AAGATCATCATATAATGAGG+TGG | + | chr2_3:50978613-50978632 | Msa0297290:CDS | 30.0% | |
| CACATGTTTGTAAATTTCGT+TGG | - | chr2_3:50978645-50978664 | None:intergenic | 30.0% | |
| CAACGAAATTTACAAACATG+TGG | + | chr2_3:50978643-50978662 | Msa0297290:CDS | 30.0% | |
| ! | ACTTTTCTTTCAACCATTAC+CGG | + | chr2_3:50978997-50979016 | Msa0297290:intron | 30.0% |
| ATCAACATGAGTACAATAAC+TGG | - | chr2_3:50979027-50979046 | None:intergenic | 30.0% | |
| TTTGCGTTTATCAAAAAGGA+TGG | + | chr2_3:50979100-50979119 | Msa0297290:CDS | 30.0% | |
| AATTGATGAGAAAAAGGAAG+AGG | + | chr2_3:50979258-50979277 | Msa0297290:CDS | 30.0% | |
| CAAGCCAAATTCAAAAAGAA+AGG | + | chr2_3:50979363-50979382 | Msa0297290:CDS | 30.0% | |
| !!! | ATTTTTGGGTTTTGGTTCTT+AGG | + | chr2_3:50978244-50978263 | Msa0297290:intron | 30.0% |
| ! | ATTTCTGAACTTGTTTGGAT+GGG | - | chr2_3:50978336-50978355 | None:intergenic | 30.0% |
| AAGATCATCATATAATGAGG+TGG | + | chr2_3:50978613-50978632 | Msa0297290:CDS | 30.0% | |
| CACATGTTTGTAAATTTCGT+TGG | - | chr2_3:50978645-50978664 | None:intergenic | 30.0% | |
| CAACGAAATTTACAAACATG+TGG | + | chr2_3:50978643-50978662 | Msa0297290:CDS | 30.0% | |
| ! | ACTTTTCTTTCAACCATTAC+CGG | + | chr2_3:50978997-50979016 | Msa0297290:intron | 30.0% |
| ATCAACATGAGTACAATAAC+TGG | - | chr2_3:50979027-50979046 | None:intergenic | 30.0% | |
| TTTGCGTTTATCAAAAAGGA+TGG | + | chr2_3:50979100-50979119 | Msa0297290:CDS | 30.0% | |
| AATTGATGAGAAAAAGGAAG+AGG | + | chr2_3:50979258-50979277 | Msa0297290:CDS | 30.0% | |
| CAAGCCAAATTCAAAAAGAA+AGG | + | chr2_3:50979363-50979382 | Msa0297290:CDS | 30.0% | |
| ! | CATTTCTGAACTTGTTTGGA+TGG | - | chr2_3:50978337-50978356 | None:intergenic | 35.0% |
| CAAACAAGTTCAGAAATGAG+CGG | + | chr2_3:50978339-50978358 | Msa0297290:CDS | 35.0% | |
| TGTATAGAATCTCGTCACAA+AGG | + | chr2_3:50978407-50978426 | Msa0297290:CDS | 35.0% | |
| TACAAACATGTGGATATCCT+CGG | + | chr2_3:50978653-50978672 | Msa0297290:CDS | 35.0% | |
| ACTAGAGCTATTAATCACGT+AGG | - | chr2_3:50978687-50978706 | None:intergenic | 35.0% | |
| AATGTTGAACCTCTTAGGTT+GGG | - | chr2_3:50978738-50978757 | None:intergenic | 35.0% | |
| TTTCCAATGTTGAACCTCTT+AGG | - | chr2_3:50978743-50978762 | None:intergenic | 35.0% | |
| AGGTTCAACATTGGAAAAAC+CGG | + | chr2_3:50978746-50978765 | Msa0297290:CDS | 35.0% | |
| ACTATTAATCCGGAGATTGA+AGG | + | chr2_3:50978950-50978969 | Msa0297290:intron | 35.0% | |
| AATAACTGGTATTCCGGTAA+TGG | - | chr2_3:50979013-50979032 | None:intergenic | 35.0% | |
| GAGTACAATAACTGGTATTC+CGG | - | chr2_3:50979019-50979038 | None:intergenic | 35.0% | |
| ! | CCTTTTTGATAAACGCAAAC+TGG | - | chr2_3:50979099-50979118 | None:intergenic | 35.0% |
| CCAGTTTGCGTTTATCAAAA+AGG | + | chr2_3:50979096-50979115 | Msa0297290:intron | 35.0% | |
| CGCAAGAATTGATGAGAAAA+AGG | + | chr2_3:50979252-50979271 | Msa0297290:CDS | 35.0% | |
| AGGAAGACGTAGAAAAAGAA+AGG | + | chr2_3:50979278-50979297 | Msa0297290:CDS | 35.0% | |
| GGAAGACGTAGAAAAAGAAA+GGG | + | chr2_3:50979279-50979298 | Msa0297290:CDS | 35.0% | |
| GTAGAAAAAGAAAGGGAAGA+AGG | + | chr2_3:50979286-50979305 | Msa0297290:CDS | 35.0% | |
| AAGAATGCTTTCTCTGTCAT+CGG | - | chr2_3:50979314-50979333 | None:intergenic | 35.0% | |
| AAAGAAAGGGAATAGCTCAT+AGG | + | chr2_3:50979377-50979396 | Msa0297290:CDS | 35.0% | |
| AAGAAAGGGAATAGCTCATA+GGG | + | chr2_3:50979378-50979397 | Msa0297290:CDS | 35.0% | |
| ! | CATTTCTGAACTTGTTTGGA+TGG | - | chr2_3:50978337-50978356 | None:intergenic | 35.0% |
| CAAACAAGTTCAGAAATGAG+CGG | + | chr2_3:50978339-50978358 | Msa0297290:CDS | 35.0% | |
| TGTATAGAATCTCGTCACAA+AGG | + | chr2_3:50978407-50978426 | Msa0297290:CDS | 35.0% | |
| TACAAACATGTGGATATCCT+CGG | + | chr2_3:50978653-50978672 | Msa0297290:CDS | 35.0% | |
| ACTAGAGCTATTAATCACGT+AGG | - | chr2_3:50978687-50978706 | None:intergenic | 35.0% | |
| AATGTTGAACCTCTTAGGTT+GGG | - | chr2_3:50978738-50978757 | None:intergenic | 35.0% | |
| TTTCCAATGTTGAACCTCTT+AGG | - | chr2_3:50978743-50978762 | None:intergenic | 35.0% | |
| AGGTTCAACATTGGAAAAAC+CGG | + | chr2_3:50978746-50978765 | Msa0297290:CDS | 35.0% | |
| ACTATTAATCCGGAGATTGA+AGG | + | chr2_3:50978950-50978969 | Msa0297290:intron | 35.0% | |
| AATAACTGGTATTCCGGTAA+TGG | - | chr2_3:50979013-50979032 | None:intergenic | 35.0% | |
| GAGTACAATAACTGGTATTC+CGG | - | chr2_3:50979019-50979038 | None:intergenic | 35.0% | |
| ! | CCTTTTTGATAAACGCAAAC+TGG | - | chr2_3:50979099-50979118 | None:intergenic | 35.0% |
| CCAGTTTGCGTTTATCAAAA+AGG | + | chr2_3:50979096-50979115 | Msa0297290:intron | 35.0% | |
| CGCAAGAATTGATGAGAAAA+AGG | + | chr2_3:50979252-50979271 | Msa0297290:CDS | 35.0% | |
| AGGAAGACGTAGAAAAAGAA+AGG | + | chr2_3:50979278-50979297 | Msa0297290:CDS | 35.0% | |
| GGAAGACGTAGAAAAAGAAA+GGG | + | chr2_3:50979279-50979298 | Msa0297290:CDS | 35.0% | |
| GTAGAAAAAGAAAGGGAAGA+AGG | + | chr2_3:50979286-50979305 | Msa0297290:CDS | 35.0% | |
| AAGAATGCTTTCTCTGTCAT+CGG | - | chr2_3:50979314-50979333 | None:intergenic | 35.0% | |
| AAAGAAAGGGAATAGCTCAT+AGG | + | chr2_3:50979377-50979396 | Msa0297290:CDS | 35.0% | |
| AAGAAAGGGAATAGCTCATA+GGG | + | chr2_3:50979378-50979397 | Msa0297290:CDS | 35.0% | |
| AGGATATGATGAGTGTACCT+TGG | + | chr2_3:50978264-50978283 | Msa0297290:intron | 40.0% | |
| ! | CGCTCATTTCTGAACTTGTT+TGG | - | chr2_3:50978341-50978360 | None:intergenic | 40.0% |
| ! | ATGGATTTTCATTGCAGTCG+AGG | - | chr2_3:50978376-50978395 | None:intergenic | 40.0% |
| CAATGTTGAACCTCTTAGGT+TGG | - | chr2_3:50978739-50978758 | None:intergenic | 40.0% | |
| CAACCTAAGAGGTTCAACAT+TGG | + | chr2_3:50978737-50978756 | Msa0297290:CDS | 40.0% | |
| TTGGAAAAACCGGTCACAAT+AGG | + | chr2_3:50978756-50978775 | Msa0297290:CDS | 40.0% | |
| TGGAAAAACCGGTCACAATA+GGG | + | chr2_3:50978757-50978776 | Msa0297290:CDS | 40.0% | |
| AAAAGAGTCCCTATTGTGAC+CGG | - | chr2_3:50978768-50978787 | None:intergenic | 40.0% | |
| CCAAAGAGCAAAAGTAGGTA+GGG | - | chr2_3:50978820-50978839 | None:intergenic | 40.0% | |
| ! | TGGCATGCAAGGTGAAATTT+TGG | + | chr2_3:50978837-50978856 | Msa0297290:intron | 40.0% |
| CATCATATGCCTTCAATCTC+CGG | - | chr2_3:50978962-50978981 | None:intergenic | 40.0% | |
| GCGTTTATCAAAAAGGATGG+TGG | + | chr2_3:50979103-50979122 | Msa0297290:CDS | 40.0% | |
| TTTCGTAAACCCAAGAGAGA+TGG | + | chr2_3:50979129-50979148 | Msa0297290:CDS | 40.0% | |
| CCATTTCTTCCATCTCTCTT+GGG | - | chr2_3:50979141-50979160 | None:intergenic | 40.0% | |
| TCCATTTCTTCCATCTCTCT+TGG | - | chr2_3:50979142-50979161 | None:intergenic | 40.0% | |
| !! | TGACAGAGAAAGCATTCTTC+CGG | + | chr2_3:50979315-50979334 | Msa0297290:CDS | 40.0% |
| AGGATATGATGAGTGTACCT+TGG | + | chr2_3:50978264-50978283 | Msa0297290:intron | 40.0% | |
| ! | CGCTCATTTCTGAACTTGTT+TGG | - | chr2_3:50978341-50978360 | None:intergenic | 40.0% |
| ! | ATGGATTTTCATTGCAGTCG+AGG | - | chr2_3:50978376-50978395 | None:intergenic | 40.0% |
| CAATGTTGAACCTCTTAGGT+TGG | - | chr2_3:50978739-50978758 | None:intergenic | 40.0% | |
| CAACCTAAGAGGTTCAACAT+TGG | + | chr2_3:50978737-50978756 | Msa0297290:CDS | 40.0% | |
| TTGGAAAAACCGGTCACAAT+AGG | + | chr2_3:50978756-50978775 | Msa0297290:CDS | 40.0% | |
| TGGAAAAACCGGTCACAATA+GGG | + | chr2_3:50978757-50978776 | Msa0297290:CDS | 40.0% | |
| AAAAGAGTCCCTATTGTGAC+CGG | - | chr2_3:50978768-50978787 | None:intergenic | 40.0% | |
| CCAAAGAGCAAAAGTAGGTA+GGG | - | chr2_3:50978820-50978839 | None:intergenic | 40.0% | |
| ! | TGGCATGCAAGGTGAAATTT+TGG | + | chr2_3:50978837-50978856 | Msa0297290:intron | 40.0% |
| CATCATATGCCTTCAATCTC+CGG | - | chr2_3:50978962-50978981 | None:intergenic | 40.0% | |
| GCGTTTATCAAAAAGGATGG+TGG | + | chr2_3:50979103-50979122 | Msa0297290:CDS | 40.0% | |
| TTTCGTAAACCCAAGAGAGA+TGG | + | chr2_3:50979129-50979148 | Msa0297290:CDS | 40.0% | |
| CCATTTCTTCCATCTCTCTT+GGG | - | chr2_3:50979141-50979160 | None:intergenic | 40.0% | |
| TCCATTTCTTCCATCTCTCT+TGG | - | chr2_3:50979142-50979161 | None:intergenic | 40.0% | |
| !! | TGACAGAGAAAGCATTCTTC+CGG | + | chr2_3:50979315-50979334 | Msa0297290:CDS | 40.0% |
| !! | ACCTTGGCTTGTAAACTTGC+TGG | + | chr2_3:50978280-50978299 | Msa0297290:CDS | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | - | chr2_3:50978673-50978692 | None:intergenic | 45.0% | |
| !! | CCCTACCTACTTTTGCTCTT+TGG | + | chr2_3:50978817-50978836 | Msa0297290:CDS | 45.0% |
| GCCAAAGAGCAAAAGTAGGT+AGG | - | chr2_3:50978821-50978840 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | - | chr2_3:50978825-50978844 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2_3:50978826-50978845 | Msa0297290:CDS | 45.0% |
| ! | CGGAGATTGAAGGCATATGA+TGG | + | chr2_3:50978960-50978979 | Msa0297290:intron | 45.0% |
| CCCAAGAGAGATGGAAGAAA+TGG | + | chr2_3:50979138-50979157 | Msa0297290:CDS | 45.0% | |
| GGCATCGCCTAAAAAAGAGA+AGG | + | chr2_3:50979186-50979205 | Msa0297290:CDS | 45.0% | |
| TCTTCCGGTTAATCGCTCAT+CGG | + | chr2_3:50979330-50979349 | Msa0297290:CDS | 45.0% | |
| !! | ACCTTGGCTTGTAAACTTGC+TGG | + | chr2_3:50978280-50978299 | Msa0297290:CDS | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | - | chr2_3:50978673-50978692 | None:intergenic | 45.0% | |
| !! | CCCTACCTACTTTTGCTCTT+TGG | + | chr2_3:50978817-50978836 | Msa0297290:CDS | 45.0% |
| GCCAAAGAGCAAAAGTAGGT+AGG | - | chr2_3:50978821-50978840 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | - | chr2_3:50978825-50978844 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2_3:50978826-50978845 | Msa0297290:CDS | 45.0% |
| ! | CGGAGATTGAAGGCATATGA+TGG | + | chr2_3:50978960-50978979 | Msa0297290:intron | 45.0% |
| CCCAAGAGAGATGGAAGAAA+TGG | + | chr2_3:50979138-50979157 | Msa0297290:CDS | 45.0% | |
| GGCATCGCCTAAAAAAGAGA+AGG | + | chr2_3:50979186-50979205 | Msa0297290:CDS | 45.0% | |
| TCTTCCGGTTAATCGCTCAT+CGG | + | chr2_3:50979330-50979349 | Msa0297290:CDS | 45.0% | |
| !! | ACATAATATAAAAATATAAT+AGG | - | chr2_3:50978866-50978885 | None:intergenic | 5.0% |
| !!! | TTTTTATATTATGTTTTAAA+CGG | + | chr2_3:50978872-50978891 | Msa0297290:intron | 5.0% |
| !! | ACATAATATAAAAATATAAT+AGG | - | chr2_3:50978866-50978885 | None:intergenic | 5.0% |
| !!! | TTTTTATATTATGTTTTAAA+CGG | + | chr2_3:50978872-50978891 | Msa0297290:intron | 5.0% |
| GCCAGCAAGTTTACAAGCCA+AGG | - | chr2_3:50978284-50978303 | None:intergenic | 50.0% | |
| GAAGCCGATGAGCGATTAAC+CGG | - | chr2_3:50979337-50979356 | None:intergenic | 50.0% | |
| GCCAGCAAGTTTACAAGCCA+AGG | - | chr2_3:50978284-50978303 | None:intergenic | 50.0% | |
| GAAGCCGATGAGCGATTAAC+CGG | - | chr2_3:50979337-50979356 | None:intergenic | 50.0% | |
| GAGCTCATGCCCAACCTAAG+AGG | + | chr2_3:50978726-50978745 | Msa0297290:CDS | 55.0% | |
| GAGCTCATGCCCAACCTAAG+AGG | + | chr2_3:50978726-50978745 | Msa0297290:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50978173 | 50979414 | 50978173 | ID=Msa0297290;Name=Msa0297290 |
| chr2_3 | mRNA | 50978173 | 50979414 | 50978173 | ID=Msa0297290-mRNA-1;Parent=Msa0297290;Name=Msa0297290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.75|0.66|0.75|4|0|246 |
| chr2_3 | exon | 50978173 | 50978178 | 50978173 | ID=Msa0297290-mRNA-1:exon:16030;Parent=Msa0297290-mRNA-1 |
| chr2_3 | exon | 50978266 | 50978445 | 50978266 | ID=Msa0297290-mRNA-1:exon:16031;Parent=Msa0297290-mRNA-1 |
| chr2_3 | exon | 50978608 | 50978847 | 50978608 | ID=Msa0297290-mRNA-1:exon:16032;Parent=Msa0297290-mRNA-1 |
| chr2_3 | exon | 50979100 | 50979414 | 50979100 | ID=Msa0297290-mRNA-1:exon:16033;Parent=Msa0297290-mRNA-1 |
| chr2_3 | CDS | 50978173 | 50978178 | 50978173 | ID=Msa0297290-mRNA-1:cds;Parent=Msa0297290-mRNA-1 |
| chr2_3 | CDS | 50978266 | 50978445 | 50978266 | ID=Msa0297290-mRNA-1:cds;Parent=Msa0297290-mRNA-1 |
| chr2_3 | CDS | 50978608 | 50978847 | 50978608 | ID=Msa0297290-mRNA-1:cds;Parent=Msa0297290-mRNA-1 |
| chr2_3 | CDS | 50979100 | 50979414 | 50979100 | ID=Msa0297290-mRNA-1:cds;Parent=Msa0297290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
