Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297300 | KEH38906.1 | 86.831 | 243 | 31 | 1 | 5 | 247 | 1 | 242 | 1.33e-154 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297300 | sp|Q1G3Q4|RITF1_ARATH | 37.589 | 141 | 76 | 5 | 9 | 149 | 8 | 136 | 6.51e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0297300 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297300 | MtrunA17_Chr2g0320561 | 87.705 | 244 | 29 | 1 | 4 | 247 | 1 | 243 | 9.01e-144 | 402 |
| Msa0297300 | MtrunA17_Chr2g0320551 | 83.007 | 153 | 25 | 1 | 4 | 156 | 1 | 152 | 1.60e-92 | 269 |
| Msa0297300 | MtrunA17_Chr2g0320521 | 60.163 | 246 | 84 | 4 | 2 | 247 | 1 | 232 | 2.66e-92 | 271 |
| Msa0297300 | MtrunA17_Chr4g0020811 | 70.588 | 153 | 44 | 1 | 2 | 154 | 1 | 152 | 1.39e-74 | 223 |
| Msa0297300 | MtrunA17_Chr2g0308401 | 70.199 | 151 | 44 | 1 | 4 | 154 | 1 | 150 | 1.02e-72 | 219 |
| Msa0297300 | MtrunA17_Chr1g0179781 | 37.600 | 250 | 102 | 9 | 2 | 246 | 1 | 201 | 5.57e-43 | 144 |
| Msa0297300 | MtrunA17_Chr7g0265291 | 50.000 | 152 | 65 | 4 | 2 | 151 | 1 | 143 | 1.70e-40 | 138 |
| Msa0297300 | MtrunA17_Chr4g0040071 | 34.855 | 241 | 107 | 8 | 8 | 246 | 16 | 208 | 7.35e-34 | 121 |
| Msa0297300 | MtrunA17_Chr5g0411151 | 44.056 | 143 | 69 | 4 | 8 | 150 | 36 | 167 | 1.04e-33 | 122 |
| Msa0297300 | MtrunA17_Chr5g0395181 | 45.070 | 142 | 67 | 4 | 8 | 149 | 22 | 152 | 2.45e-33 | 120 |
| Msa0297300 | MtrunA17_Chr8g0366581 | 43.478 | 138 | 67 | 4 | 8 | 145 | 34 | 160 | 2.89e-30 | 112 |
| Msa0297300 | MtrunA17_Chr2g0297251 | 30.709 | 254 | 125 | 10 | 9 | 246 | 39 | 257 | 2.80e-25 | 100 |
| Msa0297300 | MtrunA17_Chr4g0065041 | 35.915 | 142 | 80 | 4 | 8 | 149 | 8 | 138 | 1.95e-21 | 89.7 |
| Msa0297300 | MtrunA17_Chr7g0230511 | 26.616 | 263 | 146 | 8 | 7 | 246 | 8 | 246 | 1.35e-20 | 87.4 |
| Msa0297300 | MtrunA17_Chr8g0392151 | 32.692 | 156 | 87 | 5 | 9 | 151 | 15 | 165 | 2.53e-18 | 81.3 |
| Msa0297300 | MtrunA17_Chr4g0052451 | 36.047 | 86 | 53 | 1 | 61 | 146 | 10 | 93 | 3.27e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297300 | AT1G43000.2 | 39.431 | 246 | 113 | 10 | 3 | 246 | 12 | 223 | 9.91e-39 | 134 |
| Msa0297300 | AT1G43000.1 | 39.431 | 246 | 113 | 10 | 3 | 246 | 5 | 216 | 1.10e-38 | 134 |
| Msa0297300 | AT1G21000.2 | 32.794 | 247 | 151 | 6 | 3 | 246 | 9 | 243 | 1.68e-37 | 132 |
| Msa0297300 | AT1G21000.1 | 32.794 | 247 | 151 | 6 | 3 | 246 | 12 | 246 | 1.79e-37 | 132 |
| Msa0297300 | AT1G76590.1 | 34.440 | 241 | 142 | 7 | 8 | 246 | 19 | 245 | 2.50e-36 | 129 |
| Msa0297300 | AT1G32700.1 | 35.417 | 240 | 106 | 8 | 9 | 246 | 14 | 206 | 3.20e-31 | 115 |
| Msa0297300 | AT4G17900.1 | 46.763 | 139 | 62 | 5 | 8 | 145 | 35 | 162 | 1.40e-30 | 113 |
| Msa0297300 | AT4G17900.2 | 46.763 | 139 | 62 | 5 | 8 | 145 | 21 | 148 | 4.34e-30 | 112 |
| Msa0297300 | AT2G27930.3 | 44.604 | 139 | 74 | 3 | 9 | 146 | 6 | 142 | 5.22e-30 | 110 |
| Msa0297300 | AT2G27930.2 | 44.604 | 139 | 74 | 3 | 9 | 146 | 6 | 142 | 5.22e-30 | 110 |
| Msa0297300 | AT2G27930.1 | 44.853 | 136 | 72 | 3 | 9 | 143 | 6 | 139 | 1.65e-29 | 109 |
| Msa0297300 | AT2G27930.4 | 44.853 | 136 | 72 | 3 | 9 | 143 | 6 | 139 | 1.65e-29 | 109 |
| Msa0297300 | AT1G32700.2 | 34.906 | 212 | 90 | 7 | 37 | 246 | 2 | 167 | 8.99e-26 | 99.8 |
| Msa0297300 | AT1G31040.1 | 28.033 | 239 | 154 | 6 | 9 | 246 | 21 | 242 | 3.80e-24 | 97.4 |
| Msa0297300 | AT2G12646.3 | 37.589 | 141 | 76 | 5 | 9 | 149 | 5 | 133 | 6.20e-22 | 91.7 |
| Msa0297300 | AT2G12646.1 | 37.589 | 141 | 76 | 5 | 9 | 149 | 8 | 136 | 6.62e-22 | 91.7 |
| Msa0297300 | AT2G12646.2 | 37.589 | 141 | 76 | 5 | 9 | 149 | 8 | 136 | 6.62e-22 | 91.7 |
| Msa0297300 | AT5G46710.3 | 33.195 | 241 | 113 | 10 | 9 | 246 | 14 | 209 | 1.37e-21 | 89.7 |
| Msa0297300 | AT5G46710.1 | 33.195 | 241 | 113 | 10 | 9 | 246 | 30 | 225 | 1.44e-21 | 90.1 |
| Msa0297300 | AT2G01818.1 | 30.041 | 243 | 133 | 8 | 9 | 247 | 13 | 222 | 6.63e-21 | 88.2 |
| Msa0297300 | AT5G46710.2 | 41.176 | 136 | 68 | 5 | 9 | 143 | 30 | 154 | 1.39e-20 | 85.9 |
| Msa0297300 | AT3G60670.1 | 37.226 | 137 | 74 | 5 | 9 | 145 | 9 | 133 | 1.48e-18 | 82.4 |
| Msa0297300 | AT2G27930.5 | 46.341 | 82 | 43 | 1 | 63 | 143 | 61 | 142 | 3.78e-15 | 72.0 |
| Msa0297300 | AT2G27930.6 | 46.341 | 82 | 43 | 1 | 63 | 143 | 61 | 142 | 3.78e-15 | 72.0 |
Find 30 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTTCTTCCATCTCTAT+TGG | 0.178002 | 2_3:-50992229 | None:intergenic |
| CCATTTCTTCCATCTCTATT+GGG | 0.260204 | 2_3:-50992228 | None:intergenic |
| TCTATACAAGATTCACAAAA+TGG | 0.271078 | 2_3:-50991500 | None:intergenic |
| CCCAATAGAGATGGAAGAAA+TGG | 0.326616 | 2_3:+50992228 | Msa0297300:CDS |
| GAGATGTGATATATATCTTA+TGG | 0.328572 | 2_3:+50991874 | Msa0297300:CDS |
| CAATGTTGAACCTCTTAGAT+TGG | 0.356311 | 2_3:-50991817 | None:intergenic |
| ACCTTGGCTTGTAAACTTGC+TGG | 0.395128 | 2_3:+50991385 | Msa0297300:CDS |
| AAAGAAAGGGAATAGCTCAT+AGG | 0.424904 | 2_3:+50992467 | Msa0297300:CDS |
| AGGAAGACGTAGATAAAGAA+AGG | 0.431828 | 2_3:+50992368 | Msa0297300:CDS |
| AATGTTGAACCTCTTAGATT+GGG | 0.435133 | 2_3:-50991816 | None:intergenic |
| TTAGAAGACGCAAGAATTGA+TGG | 0.439590 | 2_3:+50992334 | Msa0297300:CDS |
| TGACAGAGAAAGCATTCTTC+CGG | 0.441662 | 2_3:+50992405 | Msa0297300:CDS |
| AATTGATGGGAAAGAGGAAG+AGG | 0.477013 | 2_3:+50992348 | Msa0297300:CDS |
| GAAGCCGATGAACGATTAAC+CGG | 0.479886 | 2_3:-50992424 | None:intergenic |
| AAGAAAGGGAATAGCTCATA+GGG | 0.490291 | 2_3:+50992468 | Msa0297300:CDS |
| GGAAGACGTAGATAAAGAAA+GGG | 0.506865 | 2_3:+50992369 | Msa0297300:CDS |
| CGCAAGAATTGATGGGAAAG+AGG | 0.508669 | 2_3:+50992342 | Msa0297300:CDS |
| ACTAGAGCTATTAATGACAT+AGG | 0.514121 | 2_3:-50991765 | None:intergenic |
| GCCAGCAAGTTTACAAGCCA+AGG | 0.514131 | 2_3:-50991386 | None:intergenic |
| GAGCTCATGCCCAATCTAAG+AGG | 0.532616 | 2_3:+50991807 | Msa0297300:CDS |
| GTAGATAAAGAAAGGGAAGA+AGG | 0.539537 | 2_3:+50992376 | Msa0297300:CDS |
| AGGATATGATGTGTGTACCT+TGG | 0.542052 | 2_3:+50991369 | Msa0297300:intron |
| TTTCGTAAACCCAATAGAGA+TGG | 0.553094 | 2_3:+50992219 | Msa0297300:CDS |
| AAGAATGCTTTCTCTGTCAT+CGG | 0.559247 | 2_3:-50992401 | None:intergenic |
| TCTTCCGGTTAATCGTTCAT+CGG | 0.561649 | 2_3:+50992420 | Msa0297300:CDS |
| TACAAACATGTAGACATCCT+CGG | 0.578107 | 2_3:+50991734 | Msa0297300:CDS |
| TGACATAGGTTTGAATTCCG+AGG | 0.586337 | 2_3:-50991751 | None:intergenic |
| TAGAAGACGCAAGAATTGAT+GGG | 0.586958 | 2_3:+50992335 | Msa0297300:CDS |
| CAATCTAAGAGGTTCAACAT+TGG | 0.620728 | 2_3:+50991818 | Msa0297300:CDS |
| CAATGATAAATCAGATAAGG+AGG | 0.638313 | 2_3:+50991675 | Msa0297300:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAAAAAAAATATAAT+AGG | - | chr2_3:50991947-50991966 | None:intergenic | 0.0% |
| !! | TAATATAAAAAAAATATAAT+AGG | - | chr2_3:50991947-50991966 | None:intergenic | 0.0% |
| !! | AAAAAAAAATACAAAGAATT+AGG | - | chr2_3:50991319-50991338 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATTTTGTTTCTT+AGG | + | chr2_3:50991349-50991368 | Msa0297300:intron | 10.0% |
| !! | AAAAAAAAATACAAAGAATT+AGG | - | chr2_3:50991319-50991338 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATTTTGTTTCTT+AGG | + | chr2_3:50991349-50991368 | Msa0297300:intron | 10.0% |
| !! | ATTAATAGTAATAAAAGGAG+TGG | - | chr2_3:50992023-50992042 | None:intergenic | 20.0% |
| !!! | TCCTTTTATTACTATTAATC+CGG | + | chr2_3:50992024-50992043 | Msa0297300:intron | 20.0% |
| !!! | ATTTTGTTTGTAGCATTTTT+TGG | - | chr2_3:50992302-50992321 | None:intergenic | 20.0% |
| !! | ATTAATAGTAATAAAAGGAG+TGG | - | chr2_3:50992023-50992042 | None:intergenic | 20.0% |
| !!! | TCCTTTTATTACTATTAATC+CGG | + | chr2_3:50992024-50992043 | Msa0297300:intron | 20.0% |
| !!! | ATTTTGTTTGTAGCATTTTT+TGG | - | chr2_3:50992302-50992321 | None:intergenic | 20.0% |
| ! | TCTATACAAGATTCACAAAA+TGG | - | chr2_3:50991503-50991522 | None:intergenic | 25.0% |
| ! | TTGCAATGATAAATCAGATA+AGG | + | chr2_3:50991672-50991691 | Msa0297300:intron | 25.0% |
| ! | GAGATGTGATATATATCTTA+TGG | + | chr2_3:50991874-50991893 | Msa0297300:CDS | 25.0% |
| ! | TCCGGATTAATAGTAATAAA+AGG | - | chr2_3:50992028-50992047 | None:intergenic | 25.0% |
| ! | TTTGCGTTTATAAAAAAGGA+TGG | + | chr2_3:50992190-50992209 | Msa0297300:CDS | 25.0% |
| !!! | TTTTTGGCCTTATCTTTTTT+AGG | - | chr2_3:50992286-50992305 | None:intergenic | 25.0% |
| ! | AAGCCAAATTCAAAAAGAAA+GGG | + | chr2_3:50992454-50992473 | Msa0297300:CDS | 25.0% |
| !! | ATTCCCTTTCTTTTTGAATT+TGG | - | chr2_3:50992460-50992479 | None:intergenic | 25.0% |
| ! | TCTATACAAGATTCACAAAA+TGG | - | chr2_3:50991503-50991522 | None:intergenic | 25.0% |
| ! | TTGCAATGATAAATCAGATA+AGG | + | chr2_3:50991672-50991691 | Msa0297300:intron | 25.0% |
| ! | GAGATGTGATATATATCTTA+TGG | + | chr2_3:50991874-50991893 | Msa0297300:CDS | 25.0% |
| ! | TCCGGATTAATAGTAATAAA+AGG | - | chr2_3:50992028-50992047 | None:intergenic | 25.0% |
| ! | TTTGCGTTTATAAAAAAGGA+TGG | + | chr2_3:50992190-50992209 | Msa0297300:CDS | 25.0% |
| !!! | TTTTTGGCCTTATCTTTTTT+AGG | - | chr2_3:50992286-50992305 | None:intergenic | 25.0% |
| ! | AAGCCAAATTCAAAAAGAAA+GGG | + | chr2_3:50992454-50992473 | Msa0297300:CDS | 25.0% |
| !! | ATTCCCTTTCTTTTTGAATT+TGG | - | chr2_3:50992460-50992479 | None:intergenic | 25.0% |
| !! | ATTTTTGGACTTGTTTGGAT+GGG | - | chr2_3:50991441-50991460 | None:intergenic | 30.0% |
| CAATGATAAATCAGATAAGG+AGG | + | chr2_3:50991675-50991694 | Msa0297300:intron | 30.0% | |
| ACTAGAGCTATTAATGACAT+AGG | - | chr2_3:50991768-50991787 | None:intergenic | 30.0% | |
| AATGTTGAACCTCTTAGATT+GGG | - | chr2_3:50991819-50991838 | None:intergenic | 30.0% | |
| AGGTTCAACATTGGAAAAAT+CGG | + | chr2_3:50991827-50991846 | Msa0297300:CDS | 30.0% | |
| ! | ACTTTTCTTTCAACCATTAC+CGG | + | chr2_3:50992081-50992100 | Msa0297300:intron | 30.0% |
| ATCAACATAAGTGCAATAAC+TGG | - | chr2_3:50992111-50992130 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAAACGCAAAC+TGG | - | chr2_3:50992189-50992208 | None:intergenic | 30.0% |
| CCAGTTTGCGTTTATAAAAA+AGG | + | chr2_3:50992186-50992205 | Msa0297300:intron | 30.0% | |
| CAAGCCAAATTCAAAAAGAA+AGG | + | chr2_3:50992453-50992472 | Msa0297300:CDS | 30.0% | |
| !! | ATTTTTGGACTTGTTTGGAT+GGG | - | chr2_3:50991441-50991460 | None:intergenic | 30.0% |
| CAATGATAAATCAGATAAGG+AGG | + | chr2_3:50991675-50991694 | Msa0297300:intron | 30.0% | |
| ACTAGAGCTATTAATGACAT+AGG | - | chr2_3:50991768-50991787 | None:intergenic | 30.0% | |
| AATGTTGAACCTCTTAGATT+GGG | - | chr2_3:50991819-50991838 | None:intergenic | 30.0% | |
| AGGTTCAACATTGGAAAAAT+CGG | + | chr2_3:50991827-50991846 | Msa0297300:CDS | 30.0% | |
| ! | ACTTTTCTTTCAACCATTAC+CGG | + | chr2_3:50992081-50992100 | Msa0297300:intron | 30.0% |
| ATCAACATAAGTGCAATAAC+TGG | - | chr2_3:50992111-50992130 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAAACGCAAAC+TGG | - | chr2_3:50992189-50992208 | None:intergenic | 30.0% |
| CCAGTTTGCGTTTATAAAAA+AGG | + | chr2_3:50992186-50992205 | Msa0297300:intron | 30.0% | |
| CAAGCCAAATTCAAAAAGAA+AGG | + | chr2_3:50992453-50992472 | Msa0297300:CDS | 30.0% | |
| !! | CATTTTTGGACTTGTTTGGA+TGG | - | chr2_3:50991442-50991461 | None:intergenic | 35.0% |
| CAAACAAGTCCAAAAATGAG+CGG | + | chr2_3:50991444-50991463 | Msa0297300:CDS | 35.0% | |
| ! | GATTTTCAATATTGCAGTCG+AGG | - | chr2_3:50991481-50991500 | None:intergenic | 35.0% |
| AATCCAAGTGAGTGTTATCT+AGG | + | chr2_3:50991547-50991566 | Msa0297300:intron | 35.0% | |
| ATACCTAGATAACACTCACT+TGG | - | chr2_3:50991553-50991572 | None:intergenic | 35.0% | |
| TACAAACATGTAGACATCCT+CGG | + | chr2_3:50991734-50991753 | Msa0297300:CDS | 35.0% | |
| CAATGTTGAACCTCTTAGAT+TGG | - | chr2_3:50991820-50991839 | None:intergenic | 35.0% | |
| CAATCTAAGAGGTTCAACAT+TGG | + | chr2_3:50991818-50991837 | Msa0297300:CDS | 35.0% | |
| ! | TAGCATGCAAGGTGAATTTT+TGG | + | chr2_3:50991918-50991937 | Msa0297300:intron | 35.0% |
| ACTATTAATCCGGAGATTGA+AGG | + | chr2_3:50992034-50992053 | Msa0297300:intron | 35.0% | |
| ! | CTTTTCTTTCAACCATTACC+GGG | + | chr2_3:50992082-50992101 | Msa0297300:intron | 35.0% |
| GCGTTTATAAAAAAGGATGG+AGG | + | chr2_3:50992193-50992212 | Msa0297300:CDS | 35.0% | |
| TTTCGTAAACCCAATAGAGA+TGG | + | chr2_3:50992219-50992238 | Msa0297300:CDS | 35.0% | |
| CCATTTCTTCCATCTCTATT+GGG | - | chr2_3:50992231-50992250 | None:intergenic | 35.0% | |
| TCCATTTCTTCCATCTCTAT+TGG | - | chr2_3:50992232-50992251 | None:intergenic | 35.0% | |
| AGCATCGCCTAAAAAAGATA+AGG | + | chr2_3:50992276-50992295 | Msa0297300:CDS | 35.0% | |
| TTAGAAGACGCAAGAATTGA+TGG | + | chr2_3:50992334-50992353 | Msa0297300:CDS | 35.0% | |
| TAGAAGACGCAAGAATTGAT+GGG | + | chr2_3:50992335-50992354 | Msa0297300:CDS | 35.0% | |
| AGGAAGACGTAGATAAAGAA+AGG | + | chr2_3:50992368-50992387 | Msa0297300:CDS | 35.0% | |
| GGAAGACGTAGATAAAGAAA+GGG | + | chr2_3:50992369-50992388 | Msa0297300:CDS | 35.0% | |
| GTAGATAAAGAAAGGGAAGA+AGG | + | chr2_3:50992376-50992395 | Msa0297300:CDS | 35.0% | |
| AAGAATGCTTTCTCTGTCAT+CGG | - | chr2_3:50992404-50992423 | None:intergenic | 35.0% | |
| AAAGAAAGGGAATAGCTCAT+AGG | + | chr2_3:50992467-50992486 | Msa0297300:CDS | 35.0% | |
| AAGAAAGGGAATAGCTCATA+GGG | + | chr2_3:50992468-50992487 | Msa0297300:CDS | 35.0% | |
| !! | CATTTTTGGACTTGTTTGGA+TGG | - | chr2_3:50991442-50991461 | None:intergenic | 35.0% |
| CAAACAAGTCCAAAAATGAG+CGG | + | chr2_3:50991444-50991463 | Msa0297300:CDS | 35.0% | |
| ! | GATTTTCAATATTGCAGTCG+AGG | - | chr2_3:50991481-50991500 | None:intergenic | 35.0% |
| AATCCAAGTGAGTGTTATCT+AGG | + | chr2_3:50991547-50991566 | Msa0297300:intron | 35.0% | |
| ATACCTAGATAACACTCACT+TGG | - | chr2_3:50991553-50991572 | None:intergenic | 35.0% | |
| TACAAACATGTAGACATCCT+CGG | + | chr2_3:50991734-50991753 | Msa0297300:CDS | 35.0% | |
| CAATGTTGAACCTCTTAGAT+TGG | - | chr2_3:50991820-50991839 | None:intergenic | 35.0% | |
| CAATCTAAGAGGTTCAACAT+TGG | + | chr2_3:50991818-50991837 | Msa0297300:CDS | 35.0% | |
| ! | TAGCATGCAAGGTGAATTTT+TGG | + | chr2_3:50991918-50991937 | Msa0297300:intron | 35.0% |
| ACTATTAATCCGGAGATTGA+AGG | + | chr2_3:50992034-50992053 | Msa0297300:intron | 35.0% | |
| ! | CTTTTCTTTCAACCATTACC+GGG | + | chr2_3:50992082-50992101 | Msa0297300:intron | 35.0% |
| GCGTTTATAAAAAAGGATGG+AGG | + | chr2_3:50992193-50992212 | Msa0297300:CDS | 35.0% | |
| TTTCGTAAACCCAATAGAGA+TGG | + | chr2_3:50992219-50992238 | Msa0297300:CDS | 35.0% | |
| CCATTTCTTCCATCTCTATT+GGG | - | chr2_3:50992231-50992250 | None:intergenic | 35.0% | |
| TCCATTTCTTCCATCTCTAT+TGG | - | chr2_3:50992232-50992251 | None:intergenic | 35.0% | |
| AGCATCGCCTAAAAAAGATA+AGG | + | chr2_3:50992276-50992295 | Msa0297300:CDS | 35.0% | |
| TTAGAAGACGCAAGAATTGA+TGG | + | chr2_3:50992334-50992353 | Msa0297300:CDS | 35.0% | |
| TAGAAGACGCAAGAATTGAT+GGG | + | chr2_3:50992335-50992354 | Msa0297300:CDS | 35.0% | |
| AGGAAGACGTAGATAAAGAA+AGG | + | chr2_3:50992368-50992387 | Msa0297300:CDS | 35.0% | |
| GGAAGACGTAGATAAAGAAA+GGG | + | chr2_3:50992369-50992388 | Msa0297300:CDS | 35.0% | |
| GTAGATAAAGAAAGGGAAGA+AGG | + | chr2_3:50992376-50992395 | Msa0297300:CDS | 35.0% | |
| AAGAATGCTTTCTCTGTCAT+CGG | - | chr2_3:50992404-50992423 | None:intergenic | 35.0% | |
| AAAGAAAGGGAATAGCTCAT+AGG | + | chr2_3:50992467-50992486 | Msa0297300:CDS | 35.0% | |
| AAGAAAGGGAATAGCTCATA+GGG | + | chr2_3:50992468-50992487 | Msa0297300:CDS | 35.0% | |
| AGGATATGATGTGTGTACCT+TGG | + | chr2_3:50991369-50991388 | Msa0297300:intron | 40.0% | |
| !! | CGCTCATTTTTGGACTTGTT+TGG | - | chr2_3:50991446-50991465 | None:intergenic | 40.0% |
| !! | GAACTTGTTCCGCTCATTTT+TGG | - | chr2_3:50991456-50991475 | None:intergenic | 40.0% |
| TGACATAGGTTTGAATTCCG+AGG | - | chr2_3:50991754-50991773 | None:intergenic | 40.0% | |
| TTGGAAAAATCGGTCACAGT+AGG | + | chr2_3:50991837-50991856 | Msa0297300:CDS | 40.0% | |
| TGGAAAAATCGGTCACAGTA+GGG | + | chr2_3:50991838-50991857 | Msa0297300:CDS | 40.0% | |
| ! | CTTTTGCTCTTTAGCATGCA+AGG | + | chr2_3:50991907-50991926 | Msa0297300:CDS | 40.0% |
| CATTACATGCCTTCAATCTC+CGG | - | chr2_3:50992046-50992065 | None:intergenic | 40.0% | |
| AATAACTGGTATCCCGGTAA+TGG | - | chr2_3:50992097-50992116 | None:intergenic | 40.0% | |
| AAGTGCAATAACTGGTATCC+CGG | - | chr2_3:50992103-50992122 | None:intergenic | 40.0% | |
| CCCAATAGAGATGGAAGAAA+TGG | + | chr2_3:50992228-50992247 | Msa0297300:CDS | 40.0% | |
| AATTGATGGGAAAGAGGAAG+AGG | + | chr2_3:50992348-50992367 | Msa0297300:CDS | 40.0% | |
| !! | TGACAGAGAAAGCATTCTTC+CGG | + | chr2_3:50992405-50992424 | Msa0297300:CDS | 40.0% |
| TCTTCCGGTTAATCGTTCAT+CGG | + | chr2_3:50992420-50992439 | Msa0297300:CDS | 40.0% | |
| AGGATATGATGTGTGTACCT+TGG | + | chr2_3:50991369-50991388 | Msa0297300:intron | 40.0% | |
| !! | CGCTCATTTTTGGACTTGTT+TGG | - | chr2_3:50991446-50991465 | None:intergenic | 40.0% |
| !! | GAACTTGTTCCGCTCATTTT+TGG | - | chr2_3:50991456-50991475 | None:intergenic | 40.0% |
| TGACATAGGTTTGAATTCCG+AGG | - | chr2_3:50991754-50991773 | None:intergenic | 40.0% | |
| TTGGAAAAATCGGTCACAGT+AGG | + | chr2_3:50991837-50991856 | Msa0297300:CDS | 40.0% | |
| TGGAAAAATCGGTCACAGTA+GGG | + | chr2_3:50991838-50991857 | Msa0297300:CDS | 40.0% | |
| ! | CTTTTGCTCTTTAGCATGCA+AGG | + | chr2_3:50991907-50991926 | Msa0297300:CDS | 40.0% |
| CATTACATGCCTTCAATCTC+CGG | - | chr2_3:50992046-50992065 | None:intergenic | 40.0% | |
| AATAACTGGTATCCCGGTAA+TGG | - | chr2_3:50992097-50992116 | None:intergenic | 40.0% | |
| AAGTGCAATAACTGGTATCC+CGG | - | chr2_3:50992103-50992122 | None:intergenic | 40.0% | |
| CCCAATAGAGATGGAAGAAA+TGG | + | chr2_3:50992228-50992247 | Msa0297300:CDS | 40.0% | |
| AATTGATGGGAAAGAGGAAG+AGG | + | chr2_3:50992348-50992367 | Msa0297300:CDS | 40.0% | |
| !! | TGACAGAGAAAGCATTCTTC+CGG | + | chr2_3:50992405-50992424 | Msa0297300:CDS | 40.0% |
| TCTTCCGGTTAATCGTTCAT+CGG | + | chr2_3:50992420-50992439 | Msa0297300:CDS | 40.0% | |
| !! | ACCTTGGCTTGTAAACTTGC+TGG | + | chr2_3:50991385-50991404 | Msa0297300:CDS | 45.0% |
| GGAAAAATCGGTCACAGTAG+GGG | + | chr2_3:50991839-50991858 | Msa0297300:CDS | 45.0% | |
| ! | CGGAGATTGAAGGCATGTAA+TGG | + | chr2_3:50992044-50992063 | Msa0297300:intron | 45.0% |
| CGCAAGAATTGATGGGAAAG+AGG | + | chr2_3:50992342-50992361 | Msa0297300:CDS | 45.0% | |
| GAAGCCGATGAACGATTAAC+CGG | - | chr2_3:50992427-50992446 | None:intergenic | 45.0% | |
| !! | ACCTTGGCTTGTAAACTTGC+TGG | + | chr2_3:50991385-50991404 | Msa0297300:CDS | 45.0% |
| GGAAAAATCGGTCACAGTAG+GGG | + | chr2_3:50991839-50991858 | Msa0297300:CDS | 45.0% | |
| ! | CGGAGATTGAAGGCATGTAA+TGG | + | chr2_3:50992044-50992063 | Msa0297300:intron | 45.0% |
| CGCAAGAATTGATGGGAAAG+AGG | + | chr2_3:50992342-50992361 | Msa0297300:CDS | 45.0% | |
| GAAGCCGATGAACGATTAAC+CGG | - | chr2_3:50992427-50992446 | None:intergenic | 45.0% | |
| !!! | TTTTTATATTATGTTTTAAA+CGG | + | chr2_3:50991956-50991975 | Msa0297300:intron | 5.0% |
| !!! | TTTTTATATTATGTTTTAAA+CGG | + | chr2_3:50991956-50991975 | Msa0297300:intron | 5.0% |
| GCCAGCAAGTTTACAAGCCA+AGG | - | chr2_3:50991389-50991408 | None:intergenic | 50.0% | |
| GAGCTCATGCCCAATCTAAG+AGG | + | chr2_3:50991807-50991826 | Msa0297300:CDS | 50.0% | |
| GCCAGCAAGTTTACAAGCCA+AGG | - | chr2_3:50991389-50991408 | None:intergenic | 50.0% | |
| GAGCTCATGCCCAATCTAAG+AGG | + | chr2_3:50991807-50991826 | Msa0297300:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50991277 | 50992504 | 50991277 | ID=Msa0297300;Name=Msa0297300 |
| chr2_3 | mRNA | 50991277 | 50992504 | 50991277 | ID=Msa0297300-mRNA-1;Parent=Msa0297300;Name=Msa0297300-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|0.75|1|1|4|0|247 |
| chr2_3 | exon | 50991277 | 50991282 | 50991277 | ID=Msa0297300-mRNA-1:exon:16115;Parent=Msa0297300-mRNA-1 |
| chr2_3 | exon | 50991371 | 50991553 | 50991371 | ID=Msa0297300-mRNA-1:exon:16116;Parent=Msa0297300-mRNA-1 |
| chr2_3 | exon | 50991689 | 50991928 | 50991689 | ID=Msa0297300-mRNA-1:exon:16117;Parent=Msa0297300-mRNA-1 |
| chr2_3 | exon | 50992190 | 50992504 | 50992190 | ID=Msa0297300-mRNA-1:exon:16118;Parent=Msa0297300-mRNA-1 |
| chr2_3 | CDS | 50991277 | 50991282 | 50991277 | ID=Msa0297300-mRNA-1:cds;Parent=Msa0297300-mRNA-1 |
| chr2_3 | CDS | 50991371 | 50991553 | 50991371 | ID=Msa0297300-mRNA-1:cds;Parent=Msa0297300-mRNA-1 |
| chr2_3 | CDS | 50991689 | 50991928 | 50991689 | ID=Msa0297300-mRNA-1:cds;Parent=Msa0297300-mRNA-1 |
| chr2_3 | CDS | 50992190 | 50992504 | 50992190 | ID=Msa0297300-mRNA-1:cds;Parent=Msa0297300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
