Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298020 | XP_003596811.1 | 83.103 | 290 | 29 | 3 | 1 | 272 | 1 | 288 | 1.31e-166 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298020 | sp|Q8RYD6|AI5L1_ARATH | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 3.38e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298020 | G7ITS3 | 83.103 | 290 | 29 | 3 | 1 | 272 | 1 | 288 | 6.25e-167 | 473 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0298020 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298020 | MtrunA17_Chr2g0321411 | 83.103 | 290 | 29 | 3 | 1 | 272 | 1 | 288 | 1.20e-170 | 473 |
| Msa0298020 | MtrunA17_Chr2g0321381 | 63.542 | 288 | 56 | 7 | 1 | 240 | 1 | 287 | 3.60e-108 | 315 |
| Msa0298020 | MtrunA17_Chr3g0080341 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 2.17e-26 | 105 |
| Msa0298020 | MtrunA17_Chr8g0355121 | 35.338 | 266 | 114 | 12 | 18 | 237 | 32 | 285 | 5.80e-26 | 103 |
| Msa0298020 | MtrunA17_Chr7g0254991 | 33.216 | 283 | 112 | 10 | 19 | 238 | 25 | 293 | 2.97e-24 | 99.4 |
| Msa0298020 | MtrunA17_Chr7g0266211 | 42.222 | 135 | 61 | 3 | 18 | 135 | 47 | 181 | 1.41e-23 | 99.0 |
| Msa0298020 | MtrunA17_Chr7g0266211 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.16e-20 | 90.9 |
| Msa0298020 | MtrunA17_Chr6g0460301 | 32.609 | 276 | 122 | 9 | 19 | 237 | 25 | 293 | 7.93e-18 | 81.6 |
| Msa0298020 | MtrunA17_Chr5g0440841 | 31.081 | 222 | 135 | 5 | 17 | 237 | 37 | 241 | 2.30e-17 | 79.7 |
| Msa0298020 | MtrunA17_Chr3g0133971 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 3.24e-15 | 75.1 |
| Msa0298020 | MtrunA17_Chr3g0133971 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 7.31e-14 | 70.9 |
| Msa0298020 | MtrunA17_Chr4g0044771 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 5.31e-13 | 68.2 |
| Msa0298020 | MtrunA17_Chr4g0051101 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.55e-12 | 64.7 |
| Msa0298020 | MtrunA17_Chr1g0201751 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 3.88e-11 | 61.6 |
| Msa0298020 | MtrunA17_Chr5g0405951 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 5.15e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298020 | AT3G44460.1 | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 3.43e-49 | 166 |
| Msa0298020 | AT3G56850.1 | 34.615 | 260 | 116 | 11 | 18 | 237 | 24 | 269 | 6.02e-28 | 109 |
| Msa0298020 | AT2G36270.3 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.69e-27 | 110 |
| Msa0298020 | AT2G36270.3 | 45.333 | 75 | 28 | 2 | 71 | 132 | 145 | 219 | 1.44e-11 | 64.7 |
| Msa0298020 | AT2G36270.1 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.06e-27 | 110 |
| Msa0298020 | AT2G36270.1 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.40e-15 | 76.6 |
| Msa0298020 | AT2G36270.2 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.06e-27 | 110 |
| Msa0298020 | AT2G36270.2 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.40e-15 | 76.6 |
| Msa0298020 | AT2G41070.5 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 1.98e-25 | 101 |
| Msa0298020 | AT2G41070.3 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 4.38e-25 | 100 |
| Msa0298020 | AT2G41070.1 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 4.38e-25 | 100 |
| Msa0298020 | AT2G41070.2 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 4.38e-25 | 100 |
| Msa0298020 | AT2G41070.4 | 32.287 | 223 | 116 | 4 | 25 | 238 | 48 | 244 | 5.00e-25 | 100 |
| Msa0298020 | AT5G44080.1 | 29.787 | 188 | 99 | 5 | 81 | 252 | 120 | 290 | 1.43e-15 | 75.5 |
| Msa0298020 | AT1G45249.1 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 8.95e-15 | 73.9 |
| Msa0298020 | AT1G45249.1 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 3.71e-11 | 63.2 |
| Msa0298020 | AT1G45249.7 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.06e-14 | 73.9 |
| Msa0298020 | AT1G45249.7 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.54e-11 | 63.5 |
| Msa0298020 | AT1G45249.6 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.06e-14 | 73.9 |
| Msa0298020 | AT1G45249.6 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.54e-11 | 63.5 |
| Msa0298020 | AT1G03970.1 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 3.85e-14 | 70.9 |
| Msa0298020 | AT4G34000.1 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.40e-14 | 71.6 |
| Msa0298020 | AT4G34000.4 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.40e-14 | 71.6 |
| Msa0298020 | AT4G34000.2 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.40e-14 | 71.6 |
| Msa0298020 | AT3G19290.1 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.79e-13 | 70.1 |
| Msa0298020 | AT3G19290.5 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.79e-13 | 70.1 |
| Msa0298020 | AT3G19290.4 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.83e-13 | 70.1 |
| Msa0298020 | AT3G19290.3 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.64e-13 | 69.3 |
| Msa0298020 | AT1G49720.1 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.28e-13 | 68.9 |
| Msa0298020 | AT1G49720.1 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.60e-12 | 65.5 |
| Msa0298020 | AT1G49720.3 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.28e-13 | 68.9 |
| Msa0298020 | AT1G49720.3 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.60e-12 | 65.5 |
| Msa0298020 | AT1G49720.2 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.94e-13 | 68.9 |
| Msa0298020 | AT1G49720.2 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 9.67e-12 | 65.1 |
| Msa0298020 | AT2G17770.2 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 2.42e-12 | 64.7 |
| Msa0298020 | AT4G34000.3 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.43e-12 | 66.6 |
| Msa0298020 | AT1G45249.3 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 6.88e-12 | 65.5 |
| Msa0298020 | AT1G45249.3 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.68e-11 | 63.2 |
| Msa0298020 | AT4G35900.1 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 6.52e-11 | 62.0 |
| Msa0298020 | AT1G45249.10 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 9.55e-11 | 62.0 |
| Msa0298020 | AT1G45249.5 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 9.55e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2_3:+51970420 | None:intergenic |
| ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2_3:-51970861 | Msa0298020:CDS |
| TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2_3:-51969894 | Msa0298020:intron |
| CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2_3:+51970469 | None:intergenic |
| TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2_3:+51970394 | None:intergenic |
| CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2_3:-51970508 | Msa0298020:CDS |
| ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2_3:+51970458 | None:intergenic |
| AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2_3:-51970720 | Msa0298020:CDS |
| CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2_3:+51970899 | None:intergenic |
| GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2_3:-51969644 | Msa0298020:CDS |
| GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2_3:+51970765 | None:intergenic |
| ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2_3:+51970849 | None:intergenic |
| TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2_3:+51970680 | None:intergenic |
| GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2_3:-51970598 | Msa0298020:CDS |
| GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2_3:+51969594 | None:intergenic |
| AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2_3:+51970764 | None:intergenic |
| ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2_3:+51970771 | None:intergenic |
| CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2_3:-51970775 | Msa0298020:CDS |
| TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2_3:+51970616 | None:intergenic |
| CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2_3:-51969643 | Msa0298020:CDS |
| TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2_3:+51970395 | None:intergenic |
| TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2_3:+51970873 | None:intergenic |
| TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2_3:+51970834 | None:intergenic |
| ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2_3:-51970335 | Msa0298020:intron |
| ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2_3:-51970421 | Msa0298020:CDS |
| TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2_3:-51970731 | Msa0298020:CDS |
| AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2_3:+51970900 | None:intergenic |
| GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2_3:-51969653 | Msa0298020:CDS |
| TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2_3:-51970553 | Msa0298020:CDS |
| CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2_3:+51970397 | None:intergenic |
| CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2_3:+51970872 | None:intergenic |
| CTCAAGAAGCAAGAAACACC+TGG | 0.571531 | 2_3:-51970634 | Msa0298020:CDS |
| AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2_3:-51969775 | Msa0298020:CDS |
| TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2_3:+51970854 | None:intergenic |
| TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2_3:-51970953 | Msa0298020:CDS |
| AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2_3:-51969612 | Msa0298020:CDS |
| GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2_3:-51970432 | Msa0298020:CDS |
| GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2_3:-51969945 | Msa0298020:CDS |
| GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2_3:-51970884 | Msa0298020:CDS |
| GCAACATACCAAATGACAAG+TGG | 0.610150 | 2_3:-51970466 | Msa0298020:CDS |
| ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2_3:-51970451 | Msa0298020:CDS |
| CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2_3:+51970508 | None:intergenic |
| TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2_3:+51970396 | None:intergenic |
| TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2_3:-51969765 | Msa0298020:intron |
| AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2_3:-51969642 | Msa0298020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2_3:51969894-51969913 | None:intergenic | 20.0% |
| !! | TACTTATTAATCACATAACT+TGG | - | chr2_3:51970300-51970319 | Msa0298020:intron | 20.0% |
| !!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2_3:51970587-51970606 | None:intergenic | 20.0% |
| !!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2_3:51970772-51970791 | Msa0298020:CDS | 20.0% |
| !!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2_3:51969894-51969913 | None:intergenic | 20.0% |
| !! | TACTTATTAATCACATAACT+TGG | - | chr2_3:51970300-51970319 | Msa0298020:intron | 20.0% |
| !!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2_3:51970587-51970606 | None:intergenic | 20.0% |
| !!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2_3:51970772-51970791 | Msa0298020:CDS | 20.0% |
| ! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2_3:51969670-51969689 | None:intergenic | 25.0% |
| ! | AATGATGAAAAATCGAGAAT+CGG | - | chr2_3:51970205-51970224 | Msa0298020:intron | 25.0% |
| !! | AGATTTTAAATAACAGTCTG+TGG | - | chr2_3:51970482-51970501 | Msa0298020:CDS | 25.0% |
| !!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2_3:51970536-51970555 | Msa0298020:CDS | 25.0% |
| !!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2_3:51970537-51970556 | Msa0298020:CDS | 25.0% |
| ! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2_3:51970601-51970620 | Msa0298020:CDS | 25.0% |
| ! | TAAAATGCTGAAACAATTTC+TGG | - | chr2_3:51970673-51970692 | Msa0298020:CDS | 25.0% |
| ! | CAATACTGAAACTGAATATA+CGG | - | chr2_3:51970700-51970719 | Msa0298020:CDS | 25.0% |
| ! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2_3:51970777-51970796 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2_3:51969670-51969689 | None:intergenic | 25.0% |
| ! | AATGATGAAAAATCGAGAAT+CGG | - | chr2_3:51970205-51970224 | Msa0298020:intron | 25.0% |
| !! | AGATTTTAAATAACAGTCTG+TGG | - | chr2_3:51970482-51970501 | Msa0298020:CDS | 25.0% |
| !!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2_3:51970536-51970555 | Msa0298020:CDS | 25.0% |
| !!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2_3:51970537-51970556 | Msa0298020:CDS | 25.0% |
| ! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2_3:51970601-51970620 | Msa0298020:CDS | 25.0% |
| ! | TAAAATGCTGAAACAATTTC+TGG | - | chr2_3:51970673-51970692 | Msa0298020:CDS | 25.0% |
| ! | CAATACTGAAACTGAATATA+CGG | - | chr2_3:51970700-51970719 | Msa0298020:CDS | 25.0% |
| ! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2_3:51970777-51970796 | None:intergenic | 25.0% |
| TCTACAACAATTAGATCAAG+AGG | - | chr2_3:51969614-51969633 | Msa0298020:CDS | 30.0% | |
| CAAAGTTCTTGAAATCATCT+AGG | + | chr2_3:51969671-51969690 | None:intergenic | 30.0% | |
| !!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2_3:51969874-51969893 | None:intergenic | 30.0% |
| TTTCTTCTTTGAATTGTGGT+TGG | + | chr2_3:51969890-51969909 | None:intergenic | 30.0% | |
| ! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2_3:51969917-51969936 | None:intergenic | 30.0% |
| !! | AATGACTTTTGAGGATTTCT+TGG | - | chr2_3:51969959-51969978 | Msa0298020:intron | 30.0% |
| TAAAATCGTGTTTACCTTTG+CGG | - | chr2_3:51970344-51970363 | Msa0298020:CDS | 30.0% | |
| TCTACAACAATTAGATCAAG+AGG | - | chr2_3:51969614-51969633 | Msa0298020:CDS | 30.0% | |
| CAAAGTTCTTGAAATCATCT+AGG | + | chr2_3:51969671-51969690 | None:intergenic | 30.0% | |
| !!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2_3:51969874-51969893 | None:intergenic | 30.0% |
| TTTCTTCTTTGAATTGTGGT+TGG | + | chr2_3:51969890-51969909 | None:intergenic | 30.0% | |
| ! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2_3:51969917-51969936 | None:intergenic | 30.0% |
| !! | AATGACTTTTGAGGATTTCT+TGG | - | chr2_3:51969959-51969978 | Msa0298020:intron | 30.0% |
| TAAAATCGTGTTTACCTTTG+CGG | - | chr2_3:51970344-51970363 | Msa0298020:CDS | 30.0% | |
| TCCAGTTTGCAAGAAAACTT+CGG | - | chr2_3:51969836-51969855 | Msa0298020:intron | 35.0% | |
| AGAAAACTTCGGATGAAGTT+TGG | - | chr2_3:51969847-51969866 | Msa0298020:intron | 35.0% | |
| ! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2_3:51970014-51970033 | Msa0298020:intron | 35.0% |
| ACCAGAAAGAGGATAATTGA+TGG | - | chr2_3:51970146-51970165 | Msa0298020:intron | 35.0% | |
| ACCATCAATTATCCTCTTTC+TGG | + | chr2_3:51970150-51970169 | None:intergenic | 35.0% | |
| TTGGATTTATCGCGAAATCA+AGG | + | chr2_3:51970382-51970401 | None:intergenic | 35.0% | |
| AAATCCAACACAAATGTGAC+AGG | - | chr2_3:51970394-51970413 | Msa0298020:CDS | 35.0% | |
| TTATGTCACAGCCTAAATCA+CGG | + | chr2_3:51970508-51970527 | None:intergenic | 35.0% | |
| !! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2_3:51970541-51970560 | Msa0298020:CDS | 35.0% |
| CAATCAGCAAAGGTTCAAAA+GGG | - | chr2_3:51970924-51970943 | Msa0298020:CDS | 35.0% | |
| AATCAGCAAAGGTTCAAAAG+GGG | - | chr2_3:51970925-51970944 | Msa0298020:CDS | 35.0% | |
| TCCAGTTTGCAAGAAAACTT+CGG | - | chr2_3:51969836-51969855 | Msa0298020:intron | 35.0% | |
| AGAAAACTTCGGATGAAGTT+TGG | - | chr2_3:51969847-51969866 | Msa0298020:intron | 35.0% | |
| ! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2_3:51970014-51970033 | Msa0298020:intron | 35.0% |
| ACCAGAAAGAGGATAATTGA+TGG | - | chr2_3:51970146-51970165 | Msa0298020:intron | 35.0% | |
| ACCATCAATTATCCTCTTTC+TGG | + | chr2_3:51970150-51970169 | None:intergenic | 35.0% | |
| TTGGATTTATCGCGAAATCA+AGG | + | chr2_3:51970382-51970401 | None:intergenic | 35.0% | |
| AAATCCAACACAAATGTGAC+AGG | - | chr2_3:51970394-51970413 | Msa0298020:CDS | 35.0% | |
| TTATGTCACAGCCTAAATCA+CGG | + | chr2_3:51970508-51970527 | None:intergenic | 35.0% | |
| !! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2_3:51970541-51970560 | Msa0298020:CDS | 35.0% |
| CAATCAGCAAAGGTTCAAAA+GGG | - | chr2_3:51970924-51970943 | Msa0298020:CDS | 35.0% | |
| AATCAGCAAAGGTTCAAAAG+GGG | - | chr2_3:51970925-51970944 | Msa0298020:CDS | 35.0% | |
| !!! | GTAAGTGCGTTTTGATTGGT+CGG | + | chr2_3:51969648-51969667 | None:intergenic | 40.0% |
| !! | TAGGGTAAGTGCGTTTTGAT+TGG | + | chr2_3:51969652-51969671 | None:intergenic | 40.0% |
| TAGGAACTCATCCATGTTGA+GGG | + | chr2_3:51969697-51969716 | None:intergenic | 40.0% | |
| ATGAGTTCCTAGCCAGTATT+TGG | - | chr2_3:51969706-51969725 | Msa0298020:intron | 40.0% | |
| ATCACTGGAACTCCAAATAC+TGG | + | chr2_3:51969721-51969740 | None:intergenic | 40.0% | |
| TTGTGTAGTAGCTTCATCAC+TGG | + | chr2_3:51969736-51969755 | None:intergenic | 40.0% | |
| GACTGAATCACCAAGTTGTT+GGG | + | chr2_3:51969805-51969824 | None:intergenic | 40.0% | |
| AGACTGAATCACCAAGTTGT+TGG | + | chr2_3:51969806-51969825 | None:intergenic | 40.0% | |
| ! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2_3:51969833-51969852 | None:intergenic | 40.0% |
| ! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2_3:51969837-51969856 | None:intergenic | 40.0% |
| ! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2_3:51969840-51969859 | None:intergenic | 40.0% |
| ! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2_3:51969950-51969969 | Msa0298020:intron | 40.0% |
| TCCTCAAAAGTCATTTCTCC+AGG | + | chr2_3:51969954-51969973 | None:intergenic | 40.0% | |
| GAGGATTTCTTGGTAAAAGC+TGG | - | chr2_3:51969969-51969988 | Msa0298020:intron | 40.0% | |
| CCAGAACTTGCAATATTCAG+TGG | + | chr2_3:51970062-51970081 | None:intergenic | 40.0% | |
| CCACTGAATATTGCAAGTTC+TGG | - | chr2_3:51970059-51970078 | Msa0298020:intron | 40.0% | |
| ! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2_3:51970101-51970120 | None:intergenic | 40.0% |
| GCAACATACCAAATGACAAG+TGG | - | chr2_3:51970101-51970120 | Msa0298020:intron | 40.0% | |
| TTCGCTCCAATAGAACTTCA+GGG | + | chr2_3:51970175-51970194 | None:intergenic | 40.0% | |
| TTTCGCTCCAATAGAACTTC+AGG | + | chr2_3:51970176-51970195 | None:intergenic | 40.0% | |
| TGAACCTGTCACATTTGTGT+TGG | + | chr2_3:51970401-51970420 | None:intergenic | 40.0% | |
| GTGATTTAGGCTGTGACATA+AGG | - | chr2_3:51970507-51970526 | Msa0298020:CDS | 40.0% | |
| GGCTTATACAATAGAGCTAG+AGG | - | chr2_3:51970622-51970641 | Msa0298020:CDS | 40.0% | |
| TGAGAACAAGAGGAAACAAG+AGG | - | chr2_3:51970802-51970821 | Msa0298020:CDS | 40.0% | |
| GCAAAGAAAGCAATCAGCAA+AGG | - | chr2_3:51970914-51970933 | Msa0298020:CDS | 40.0% | |
| GCAATCAGCAAAGGTTCAAA+AGG | - | chr2_3:51970923-51970942 | Msa0298020:CDS | 40.0% | |
| !!! | GTAAGTGCGTTTTGATTGGT+CGG | + | chr2_3:51969648-51969667 | None:intergenic | 40.0% |
| !! | TAGGGTAAGTGCGTTTTGAT+TGG | + | chr2_3:51969652-51969671 | None:intergenic | 40.0% |
| TAGGAACTCATCCATGTTGA+GGG | + | chr2_3:51969697-51969716 | None:intergenic | 40.0% | |
| ATGAGTTCCTAGCCAGTATT+TGG | - | chr2_3:51969706-51969725 | Msa0298020:intron | 40.0% | |
| ATCACTGGAACTCCAAATAC+TGG | + | chr2_3:51969721-51969740 | None:intergenic | 40.0% | |
| TTGTGTAGTAGCTTCATCAC+TGG | + | chr2_3:51969736-51969755 | None:intergenic | 40.0% | |
| GACTGAATCACCAAGTTGTT+GGG | + | chr2_3:51969805-51969824 | None:intergenic | 40.0% | |
| AGACTGAATCACCAAGTTGT+TGG | + | chr2_3:51969806-51969825 | None:intergenic | 40.0% | |
| ! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2_3:51969833-51969852 | None:intergenic | 40.0% |
| ! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2_3:51969837-51969856 | None:intergenic | 40.0% |
| ! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2_3:51969840-51969859 | None:intergenic | 40.0% |
| ! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2_3:51969950-51969969 | Msa0298020:intron | 40.0% |
| TCCTCAAAAGTCATTTCTCC+AGG | + | chr2_3:51969954-51969973 | None:intergenic | 40.0% | |
| GAGGATTTCTTGGTAAAAGC+TGG | - | chr2_3:51969969-51969988 | Msa0298020:intron | 40.0% | |
| CCAGAACTTGCAATATTCAG+TGG | + | chr2_3:51970062-51970081 | None:intergenic | 40.0% | |
| CCACTGAATATTGCAAGTTC+TGG | - | chr2_3:51970059-51970078 | Msa0298020:intron | 40.0% | |
| ! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2_3:51970101-51970120 | None:intergenic | 40.0% |
| GCAACATACCAAATGACAAG+TGG | - | chr2_3:51970101-51970120 | Msa0298020:intron | 40.0% | |
| TTCGCTCCAATAGAACTTCA+GGG | + | chr2_3:51970175-51970194 | None:intergenic | 40.0% | |
| TTTCGCTCCAATAGAACTTC+AGG | + | chr2_3:51970176-51970195 | None:intergenic | 40.0% | |
| TGAACCTGTCACATTTGTGT+TGG | + | chr2_3:51970401-51970420 | None:intergenic | 40.0% | |
| GTGATTTAGGCTGTGACATA+AGG | - | chr2_3:51970507-51970526 | Msa0298020:CDS | 40.0% | |
| GGCTTATACAATAGAGCTAG+AGG | - | chr2_3:51970622-51970641 | Msa0298020:CDS | 40.0% | |
| TGAGAACAAGAGGAAACAAG+AGG | - | chr2_3:51970802-51970821 | Msa0298020:CDS | 40.0% | |
| GCAAAGAAAGCAATCAGCAA+AGG | - | chr2_3:51970914-51970933 | Msa0298020:CDS | 40.0% | |
| GCAATCAGCAAAGGTTCAAA+AGG | - | chr2_3:51970923-51970942 | Msa0298020:CDS | 40.0% | |
| GAACTTTGACTCCCTCAACA+TGG | - | chr2_3:51969683-51969702 | Msa0298020:intron | 45.0% | |
| CTAGGAACTCATCCATGTTG+AGG | + | chr2_3:51969698-51969717 | None:intergenic | 45.0% | |
| ! | TGGAACTCCAAATACTGGCT+AGG | + | chr2_3:51969716-51969735 | None:intergenic | 45.0% |
| ATCACCAAGTTGTTGGGAAC+TGG | + | chr2_3:51969799-51969818 | None:intergenic | 45.0% | |
| ! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2_3:51969834-51969853 | None:intergenic | 45.0% |
| CTCAAGAAGCAAGAAACACC+TGG | - | chr2_3:51969933-51969952 | Msa0298020:CDS | 45.0% | |
| ACTCAGCTCCACTTGTCATT+TGG | + | chr2_3:51970112-51970131 | None:intergenic | 45.0% | |
| TCGCTCCAATAGAACTTCAG+GGG | + | chr2_3:51970174-51970193 | None:intergenic | 45.0% | |
| ! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2_3:51970319-51970338 | Msa0298020:intron | 45.0% |
| AAAGTCTGTGACCGTGATTG+AGG | + | chr2_3:51970425-51970444 | None:intergenic | 45.0% | |
| ! | GCAAACGTTACGGACTATCA+CGG | + | chr2_3:51970577-51970596 | None:intergenic | 45.0% |
| AATCAAGCTCAAGCACAACC+TGG | - | chr2_3:51970955-51970974 | Msa0298020:CDS | 45.0% | |
| GAACTTTGACTCCCTCAACA+TGG | - | chr2_3:51969683-51969702 | Msa0298020:intron | 45.0% | |
| CTAGGAACTCATCCATGTTG+AGG | + | chr2_3:51969698-51969717 | None:intergenic | 45.0% | |
| ! | TGGAACTCCAAATACTGGCT+AGG | + | chr2_3:51969716-51969735 | None:intergenic | 45.0% |
| ATCACCAAGTTGTTGGGAAC+TGG | + | chr2_3:51969799-51969818 | None:intergenic | 45.0% | |
| ! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2_3:51969834-51969853 | None:intergenic | 45.0% |
| CTCAAGAAGCAAGAAACACC+TGG | - | chr2_3:51969933-51969952 | Msa0298020:CDS | 45.0% | |
| ACTCAGCTCCACTTGTCATT+TGG | + | chr2_3:51970112-51970131 | None:intergenic | 45.0% | |
| TCGCTCCAATAGAACTTCAG+GGG | + | chr2_3:51970174-51970193 | None:intergenic | 45.0% | |
| ! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2_3:51970319-51970338 | Msa0298020:intron | 45.0% |
| AAAGTCTGTGACCGTGATTG+AGG | + | chr2_3:51970425-51970444 | None:intergenic | 45.0% | |
| ! | GCAAACGTTACGGACTATCA+CGG | + | chr2_3:51970577-51970596 | None:intergenic | 45.0% |
| AATCAAGCTCAAGCACAACC+TGG | - | chr2_3:51970955-51970974 | Msa0298020:CDS | 45.0% | |
| CACACCAGTTCCCAACAACT+TGG | - | chr2_3:51969792-51969811 | Msa0298020:intron | 50.0% | |
| ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2_3:51970116-51970135 | Msa0298020:intron | 50.0% | |
| TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2_3:51970166-51970185 | Msa0298020:intron | 50.0% | |
| CGCTCCAATAGAACTTCAGG+GGG | + | chr2_3:51970173-51970192 | None:intergenic | 50.0% | |
| GACAGGTTCAGCCTCAATCA+CGG | - | chr2_3:51970411-51970430 | Msa0298020:CDS | 50.0% | |
| ACAGTCTGTGGCCGTGATTT+AGG | - | chr2_3:51970494-51970513 | Msa0298020:CDS | 50.0% | |
| AGGCTGAAGCTGAGAACAAG+AGG | - | chr2_3:51970792-51970811 | Msa0298020:CDS | 50.0% | |
| CACACCAGTTCCCAACAACT+TGG | - | chr2_3:51969792-51969811 | Msa0298020:intron | 50.0% | |
| ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2_3:51970116-51970135 | Msa0298020:intron | 50.0% | |
| TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2_3:51970166-51970185 | Msa0298020:intron | 50.0% | |
| CGCTCCAATAGAACTTCAGG+GGG | + | chr2_3:51970173-51970192 | None:intergenic | 50.0% | |
| GACAGGTTCAGCCTCAATCA+CGG | - | chr2_3:51970411-51970430 | Msa0298020:CDS | 50.0% | |
| ACAGTCTGTGGCCGTGATTT+AGG | - | chr2_3:51970494-51970513 | Msa0298020:CDS | 50.0% | |
| AGGCTGAAGCTGAGAACAAG+AGG | - | chr2_3:51970792-51970811 | Msa0298020:CDS | 50.0% | |
| GTGGAGCTGCTACCAGAAAG+AGG | - | chr2_3:51970135-51970154 | Msa0298020:intron | 55.0% | |
| ACGTTCTCGAGCAAGACGTC+AGG | - | chr2_3:51970232-51970251 | Msa0298020:intron | 55.0% | |
| GGATTGTGAAGCGACCGCAA+AGG | + | chr2_3:51970361-51970380 | None:intergenic | 55.0% | |
| GTGGAGCTGCTACCAGAAAG+AGG | - | chr2_3:51970135-51970154 | Msa0298020:intron | 55.0% | |
| ACGTTCTCGAGCAAGACGTC+AGG | - | chr2_3:51970232-51970251 | Msa0298020:intron | 55.0% | |
| GGATTGTGAAGCGACCGCAA+AGG | + | chr2_3:51970361-51970380 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 51969609 | 51970980 | 51969609 | ID=Msa0298020;Name=Msa0298020 |
| chr2_3 | mRNA | 51969609 | 51970980 | 51969609 | ID=Msa0298020-mRNA-1;Parent=Msa0298020;Name=Msa0298020-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|4|0|272 |
| chr2_3 | exon | 51970336 | 51970980 | 51970336 | ID=Msa0298020-mRNA-1:exon:16559;Parent=Msa0298020-mRNA-1 |
| chr2_3 | exon | 51969895 | 51969966 | 51969895 | ID=Msa0298020-mRNA-1:exon:16558;Parent=Msa0298020-mRNA-1 |
| chr2_3 | exon | 51969766 | 51969795 | 51969766 | ID=Msa0298020-mRNA-1:exon:16557;Parent=Msa0298020-mRNA-1 |
| chr2_3 | exon | 51969609 | 51969680 | 51969609 | ID=Msa0298020-mRNA-1:exon:16556;Parent=Msa0298020-mRNA-1 |
| chr2_3 | CDS | 51970336 | 51970980 | 51970336 | ID=Msa0298020-mRNA-1:cds;Parent=Msa0298020-mRNA-1 |
| chr2_3 | CDS | 51969895 | 51969966 | 51969895 | ID=Msa0298020-mRNA-1:cds;Parent=Msa0298020-mRNA-1 |
| chr2_3 | CDS | 51969766 | 51969795 | 51969766 | ID=Msa0298020-mRNA-1:cds;Parent=Msa0298020-mRNA-1 |
| chr2_3 | CDS | 51969609 | 51969680 | 51969609 | ID=Msa0298020-mRNA-1:cds;Parent=Msa0298020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
